2023-02-12T21:35:41,662 Created temporary directory: /tmp/pip-ephem-wheel-cache-uzvcwu41 2023-02-12T21:35:41,664 Created temporary directory: /tmp/pip-build-tracker-fzcbixd7 2023-02-12T21:35:41,664 Initialized build tracking at /tmp/pip-build-tracker-fzcbixd7 2023-02-12T21:35:41,664 Created build tracker: /tmp/pip-build-tracker-fzcbixd7 2023-02-12T21:35:41,665 Entered build tracker: /tmp/pip-build-tracker-fzcbixd7 2023-02-12T21:35:41,665 Created temporary directory: /tmp/pip-wheel-flspiczw 2023-02-12T21:35:41,668 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-12T21:35:41,671 Created temporary directory: /tmp/pip-ephem-wheel-cache-oqxvo07p 2023-02-12T21:35:41,698 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-12T21:35:41,702 2 location(s) to search for versions of funid: 2023-02-12T21:35:41,702 * https://pypi.org/simple/funid/ 2023-02-12T21:35:41,702 * https://www.piwheels.org/simple/funid/ 2023-02-12T21:35:41,702 Fetching project page and analyzing links: https://pypi.org/simple/funid/ 2023-02-12T21:35:41,703 Getting page https://pypi.org/simple/funid/ 2023-02-12T21:35:41,704 Found index url https://pypi.org/simple 2023-02-12T21:35:41,757 Fetched page https://pypi.org/simple/funid/ as application/vnd.pypi.simple.v1+json 2023-02-12T21:35:41,760 Found link https://files.pythonhosted.org/packages/b0/d0/b9677ff882d01786ca1981c74fefbb390901732cac86cb16d066cfbcee73/FunID-0.3.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.0 2023-02-12T21:35:41,760 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/6a/08/2bccf4d17d6297e5c52bcba4eda5d5a1ed634eeb4c048a6a0492bf26f0e2/FunID-0.3.2-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-02-12T21:35:41,761 Found link https://files.pythonhosted.org/packages/4f/38/873f19b14c7c4ddfcd7f26ae1d2bd8a785a00b43931b2495493aa52029ff/FunID-0.3.2.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.2 2023-02-12T21:35:41,761 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/77/47/e4d4394d3df8130a967d730b209ee08f0563e8c07d358e0938084ea2c238/FunID-0.3.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-02-12T21:35:41,762 Found link https://files.pythonhosted.org/packages/17/c7/bcd0e755fa5647dda4672ae9fd88f94d590c796d5312b2839b1e00beea1b/FunID-0.3.2.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.2.1 2023-02-12T21:35:41,762 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/20/65/dd3f11ff95c939d1894a81682d820f36a991bcf8f100b19982da1b3787ba/FunID-0.3.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-02-12T21:35:41,763 Found link https://files.pythonhosted.org/packages/48/62/211e51aabf536101577540574d126849837a43fa07e8c7c79ec79378bf30/FunID-0.3.3.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.3.0 2023-02-12T21:35:41,763 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/31/96/b453dc34699170a20a00aa02e9a0eeb511d75494b88bef72641a7f4aabe1/FunID-0.3.3.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-02-12T21:35:41,764 Found link https://files.pythonhosted.org/packages/00/60/4a6fee9144f0fd461c9e04e3f27ac9bbe36c2b7e9b04ddb9159a2e83481d/FunID-0.3.3.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.3.1 2023-02-12T21:35:41,764 Fetching project page and analyzing links: https://www.piwheels.org/simple/funid/ 2023-02-12T21:35:41,764 Getting page https://www.piwheels.org/simple/funid/ 2023-02-12T21:35:41,766 Found index url https://www.piwheels.org/simple 2023-02-12T21:35:42,049 Fetched page https://www.piwheels.org/simple/funid/ as text/html 2023-02-12T21:35:42,051 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.3.0-py3-none-any.whl#sha256=dbca8d35c471b5a3c78fa7f5310bc475466d4bdc67ffff084e63baaf20a81154 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-02-12T21:35:42,051 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.2.1-py3-none-any.whl#sha256=273f7078ce3ee94e0c5f6e862a8419c6ea6bd05ea1153174fba3ac5259d65f3a (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-02-12T21:35:42,052 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.2-py3-none-any.whl#sha256=d0714cd7cd6b2c16ae6dc7120ae5ede922e049fab52e6d1a2a24c6e7075360be (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-02-12T21:35:42,052 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.0-py3-none-any.whl#sha256=e875a0092c43c61afaa8f12b92c67d0ae13e5a081dc0f494828474f50c67bfd2 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-02-12T21:35:42,052 Skipping link: not a file: https://www.piwheels.org/simple/funid/ 2023-02-12T21:35:42,052 Skipping link: not a file: https://pypi.org/simple/funid/ 2023-02-12T21:35:42,071 Given no hashes to check 1 links for project 'funid': discarding no candidates 2023-02-12T21:35:42,087 Collecting funid==0.3.3.1 2023-02-12T21:35:42,089 Created temporary directory: /tmp/pip-unpack-48el8g10 2023-02-12T21:35:42,705 Downloading FunID-0.3.3.1.tar.gz (65.2 MB) 2023-02-12T21:36:18,206 Added funid==0.3.3.1 from https://files.pythonhosted.org/packages/00/60/4a6fee9144f0fd461c9e04e3f27ac9bbe36c2b7e9b04ddb9159a2e83481d/FunID-0.3.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-fzcbixd7' 2023-02-12T21:36:18,208 Running setup.py (path:/tmp/pip-wheel-flspiczw/funid_1752a15bebb64f5ca4bbec523870fed7/setup.py) egg_info for package funid 2023-02-12T21:36:18,209 Created temporary directory: /tmp/pip-pip-egg-info-uf2dpz4e 2023-02-12T21:36:18,209 Preparing metadata (setup.py): started 2023-02-12T21:36:18,210 Running command python setup.py egg_info 2023-02-12T21:36:19,380 {'name': 'FunID', 'version': '0.3.3.1', 'description': 'Fungal Identification Pipeline', 'author': 'Changwan Seo', 'author_email': 'wan101010@snu.ac.kr', 'url': 'https://github.com/Changwanseo/FunID', 'python_requires': '<=3.11, >3.8', 'packages': ['funid', 'funid.src', 'funid.data', 'funid.test_dataset', 'funid.preset'], 'install_requires': ['biopython==1.78', 'ete3==3.1.2', 'Cython', 'dendropy', 'GenMine>=1.0.7.1', 'lxml', 'matplotlib==3.5.1', 'numpy==1.22.3', 'openpyxl==3.0.9', 'pandas==1.4.2', 'plotly==5.9.0', 'PyQt5>=5.9.2', 'pyyaml', 'sip>=4.19.4', 'scikit-learn==1.0.2', 'tabulate', 'unidecode==1.2.0', 'xlrd==2.0.1', 'xlsxwriter', 'xmltodict==0.12.0'], 'zip_safe': False, 'entry_points': {'console_scripts': ['FunID = funid.main:main']}, 'package_dir': {'funid': 'funid'}, 'package_data': {'funid.data': ['*.xlsx', '*.txt'], 'funid.test_dataset': ['**'], 'funid.preset': ['**']}, 'include_package_data': True, 'license': 'GPL3'} 2023-02-12T21:36:19,381 running egg_info 2023-02-12T21:36:19,383 creating /tmp/pip-pip-egg-info-uf2dpz4e/FunID.egg-info 2023-02-12T21:36:19,412 writing /tmp/pip-pip-egg-info-uf2dpz4e/FunID.egg-info/PKG-INFO 2023-02-12T21:36:19,415 writing dependency_links to /tmp/pip-pip-egg-info-uf2dpz4e/FunID.egg-info/dependency_links.txt 2023-02-12T21:36:19,417 writing entry points to /tmp/pip-pip-egg-info-uf2dpz4e/FunID.egg-info/entry_points.txt 2023-02-12T21:36:19,418 writing requirements to /tmp/pip-pip-egg-info-uf2dpz4e/FunID.egg-info/requires.txt 2023-02-12T21:36:19,420 writing top-level names to /tmp/pip-pip-egg-info-uf2dpz4e/FunID.egg-info/top_level.txt 2023-02-12T21:36:19,421 writing manifest file '/tmp/pip-pip-egg-info-uf2dpz4e/FunID.egg-info/SOURCES.txt' 2023-02-12T21:36:19,522 reading manifest file '/tmp/pip-pip-egg-info-uf2dpz4e/FunID.egg-info/SOURCES.txt' 2023-02-12T21:36:19,523 adding license file 'LICENSE' 2023-02-12T21:36:19,527 writing manifest file '/tmp/pip-pip-egg-info-uf2dpz4e/FunID.egg-info/SOURCES.txt' 2023-02-12T21:36:19,641 Preparing metadata (setup.py): finished with status 'done' 2023-02-12T21:36:19,647 Source in /tmp/pip-wheel-flspiczw/funid_1752a15bebb64f5ca4bbec523870fed7 has version 0.3.3.1, which satisfies requirement funid==0.3.3.1 from https://files.pythonhosted.org/packages/00/60/4a6fee9144f0fd461c9e04e3f27ac9bbe36c2b7e9b04ddb9159a2e83481d/FunID-0.3.3.1.tar.gz 2023-02-12T21:36:19,648 Removed funid==0.3.3.1 from https://files.pythonhosted.org/packages/00/60/4a6fee9144f0fd461c9e04e3f27ac9bbe36c2b7e9b04ddb9159a2e83481d/FunID-0.3.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-fzcbixd7' 2023-02-12T21:36:19,655 Created temporary directory: /tmp/pip-unpack-zs95_38i 2023-02-12T21:36:19,655 Building wheels for collected packages: funid 2023-02-12T21:36:19,660 Created temporary directory: /tmp/pip-wheel-_6si4z55 2023-02-12T21:36:19,660 Building wheel for funid (setup.py): started 2023-02-12T21:36:19,661 Destination directory: /tmp/pip-wheel-_6si4z55 2023-02-12T21:36:19,661 Running command python setup.py bdist_wheel 2023-02-12T21:36:20,538 {'name': 'FunID', 'version': '0.3.3.1', 'description': 'Fungal Identification Pipeline', 'author': 'Changwan Seo', 'author_email': 'wan101010@snu.ac.kr', 'url': 'https://github.com/Changwanseo/FunID', 'python_requires': '<=3.11, >3.8', 'packages': ['funid', 'funid.src', 'funid.data', 'funid.test_dataset', 'funid.preset'], 'install_requires': ['biopython==1.78', 'ete3==3.1.2', 'Cython', 'dendropy', 'GenMine>=1.0.7.1', 'lxml', 'matplotlib==3.5.1', 'numpy==1.22.3', 'openpyxl==3.0.9', 'pandas==1.4.2', 'plotly==5.9.0', 'PyQt5>=5.9.2', 'pyyaml', 'sip>=4.19.4', 'scikit-learn==1.0.2', 'tabulate', 'unidecode==1.2.0', 'xlrd==2.0.1', 'xlsxwriter', 'xmltodict==0.12.0'], 'zip_safe': False, 'entry_points': {'console_scripts': ['FunID = funid.main:main']}, 'package_dir': {'funid': 'funid'}, 'package_data': {'funid.data': ['*.xlsx', '*.txt'], 'funid.test_dataset': ['**'], 'funid.preset': ['**']}, 'include_package_data': True, 'license': 'GPL3'} 2023-02-12T21:36:20,819 running bdist_wheel 2023-02-12T21:36:21,135 running build 2023-02-12T21:36:21,136 running build_py 2023-02-12T21:36:21,167 creating build 2023-02-12T21:36:21,167 creating build/lib 2023-02-12T21:36:21,168 creating build/lib/funid 2023-02-12T21:36:21,169 copying funid/FunID_GUI.py -> build/lib/funid 2023-02-12T21:36:21,172 copying funid/main.py -> build/lib/funid 2023-02-12T21:36:21,175 copying funid/__init__.py -> build/lib/funid 2023-02-12T21:36:21,177 creating build/lib/funid/src 2023-02-12T21:36:21,178 copying funid/src/cluster.py -> build/lib/funid/src 2023-02-12T21:36:21,181 copying funid/src/modeltest.py -> build/lib/funid/src 2023-02-12T21:36:21,184 copying funid/src/multigene.py -> build/lib/funid/src 2023-02-12T21:36:21,186 copying funid/src/logics.py -> build/lib/funid/src 2023-02-12T21:36:21,188 copying funid/src/opt_generator.py -> build/lib/funid/src 2023-02-12T21:36:21,190 copying funid/src/ncbi.py -> build/lib/funid/src 2023-02-12T21:36:21,192 copying funid/src/reporter.py -> build/lib/funid/src 2023-02-12T21:36:21,195 copying funid/src/manage_input.py -> build/lib/funid/src 2023-02-12T21:36:21,198 copying funid/src/logger.py -> build/lib/funid/src 2023-02-12T21:36:21,200 copying funid/src/save.py -> build/lib/funid/src 2023-02-12T21:36:21,202 copying funid/src/hasher.py -> build/lib/funid/src 2023-02-12T21:36:21,204 copying funid/src/tree_interpretation_pipe.py -> build/lib/funid/src 2023-02-12T21:36:21,207 copying funid/src/tree.py -> build/lib/funid/src 2023-02-12T21:36:21,209 copying funid/src/ext.py -> build/lib/funid/src 2023-02-12T21:36:21,211 copying funid/src/validate_option.py -> build/lib/funid/src 2023-02-12T21:36:21,215 copying funid/src/patch.py -> build/lib/funid/src 2023-02-12T21:36:21,217 copying funid/src/trim.py -> build/lib/funid/src 2023-02-12T21:36:21,219 copying funid/src/dataset.py -> build/lib/funid/src 2023-02-12T21:36:21,221 copying funid/src/__init__.py -> build/lib/funid/src 2023-02-12T21:36:21,223 copying funid/src/tool.py -> build/lib/funid/src 2023-02-12T21:36:21,225 copying funid/src/validation.py -> build/lib/funid/src 2023-02-12T21:36:21,227 copying funid/src/search.py -> build/lib/funid/src 2023-02-12T21:36:21,229 copying funid/src/initialize.py -> build/lib/funid/src 2023-02-12T21:36:21,232 copying funid/src/tree_interpretation.py -> build/lib/funid/src 2023-02-12T21:36:21,235 copying funid/src/command.py -> build/lib/funid/src 2023-02-12T21:36:21,238 copying funid/src/align.py -> build/lib/funid/src 2023-02-12T21:36:21,240 creating build/lib/funid/data 2023-02-12T21:36:21,241 copying funid/data/__init__.py -> build/lib/funid/data 2023-02-12T21:36:21,243 running egg_info 2023-02-12T21:36:21,311 writing FunID.egg-info/PKG-INFO 2023-02-12T21:36:21,313 writing dependency_links to FunID.egg-info/dependency_links.txt 2023-02-12T21:36:21,315 writing entry points to FunID.egg-info/entry_points.txt 2023-02-12T21:36:21,316 writing requirements to FunID.egg-info/requires.txt 2023-02-12T21:36:21,318 writing top-level names to FunID.egg-info/top_level.txt 2023-02-12T21:36:21,357 reading manifest file 'FunID.egg-info/SOURCES.txt' 2023-02-12T21:36:21,385 adding license file 'LICENSE' 2023-02-12T21:36:21,393 writing manifest file 'FunID.egg-info/SOURCES.txt' 2023-02-12T21:36:21,397 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external' as data is deprecated, please list it in `packages`. 2023-02-12T21:36:21,397 !! 2023-02-12T21:36:21,397 ############################ 2023-02-12T21:36:21,397 # Package would be ignored # 2023-02-12T21:36:21,398 ############################ 2023-02-12T21:36:21,398 Python recognizes 'funid.external' as an importable package, 2023-02-12T21:36:21,398 but it is not listed in the `packages` configuration of setuptools. 2023-02-12T21:36:21,398 'funid.external' has been automatically added to the distribution only 2023-02-12T21:36:21,398 because it may contain data files, but this behavior is likely to change 2023-02-12T21:36:21,398 in future versions of setuptools (and therefore is considered deprecated). 2023-02-12T21:36:21,399 Please make sure that 'funid.external' is included as a package by using 2023-02-12T21:36:21,399 the `packages` configuration field or the proper discovery methods 2023-02-12T21:36:21,399 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-12T21:36:21,399 instead of `find_packages(...)`/`find:`). 2023-02-12T21:36:21,399 You can read more about "package discovery" and "data files" on setuptools 2023-02-12T21:36:21,399 documentation page. 2023-02-12T21:36:21,400 !! 2023-02-12T21:36:21,400 check.warn(importable) 2023-02-12T21:36:21,400 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.BLAST_Windows' as data is deprecated, please list it in `packages`. 2023-02-12T21:36:21,400 !! 2023-02-12T21:36:21,401 ############################ 2023-02-12T21:36:21,401 # Package would be ignored # 2023-02-12T21:36:21,401 ############################ 2023-02-12T21:36:21,401 Python recognizes 'funid.external.BLAST_Windows' as an importable package, 2023-02-12T21:36:21,401 but it is not listed in the `packages` configuration of setuptools. 2023-02-12T21:36:21,401 'funid.external.BLAST_Windows' has been automatically added to the distribution only 2023-02-12T21:36:21,401 because it may contain data files, but this behavior is likely to change 2023-02-12T21:36:21,401 in future versions of setuptools (and therefore is considered deprecated). 2023-02-12T21:36:21,402 Please make sure that 'funid.external.BLAST_Windows' is included as a package by using 2023-02-12T21:36:21,402 the `packages` configuration field or the proper discovery methods 2023-02-12T21:36:21,402 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-12T21:36:21,402 instead of `find_packages(...)`/`find:`). 2023-02-12T21:36:21,402 You can read more about "package discovery" and "data files" on setuptools 2023-02-12T21:36:21,402 documentation page. 2023-02-12T21:36:21,403 !! 2023-02-12T21:36:21,403 check.warn(importable) 2023-02-12T21:36:21,403 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.BLAST_Windows.bin' as data is deprecated, please list it in `packages`. 2023-02-12T21:36:21,403 !! 2023-02-12T21:36:21,404 ############################ 2023-02-12T21:36:21,404 # Package would be ignored # 2023-02-12T21:36:21,404 ############################ 2023-02-12T21:36:21,404 Python recognizes 'funid.external.BLAST_Windows.bin' as an importable package, 2023-02-12T21:36:21,404 but it is not listed in the `packages` configuration of setuptools. 2023-02-12T21:36:21,404 'funid.external.BLAST_Windows.bin' has been automatically added to the distribution only 2023-02-12T21:36:21,404 because it may contain data files, but this behavior is likely to change 2023-02-12T21:36:21,405 in future versions of setuptools (and therefore is considered deprecated). 2023-02-12T21:36:21,405 Please make sure that 'funid.external.BLAST_Windows.bin' is included as a package by using 2023-02-12T21:36:21,405 the `packages` configuration field or the proper discovery methods 2023-02-12T21:36:21,405 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-12T21:36:21,405 instead of `find_packages(...)`/`find:`). 2023-02-12T21:36:21,405 You can read more about "package discovery" and "data files" on setuptools 2023-02-12T21:36:21,405 documentation page. 2023-02-12T21:36:21,406 !! 2023-02-12T21:36:21,406 check.warn(importable) 2023-02-12T21:36:21,406 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.BLAST_Windows.doc' as data is deprecated, please list it in `packages`. 2023-02-12T21:36:21,406 !! 2023-02-12T21:36:21,407 ############################ 2023-02-12T21:36:21,407 # Package would be ignored # 2023-02-12T21:36:21,407 ############################ 2023-02-12T21:36:21,407 Python recognizes 'funid.external.BLAST_Windows.doc' as an importable package, 2023-02-12T21:36:21,407 but it is not listed in the `packages` configuration of setuptools. 2023-02-12T21:36:21,407 'funid.external.BLAST_Windows.doc' has been automatically added to the distribution only 2023-02-12T21:36:21,407 because it may contain data files, but this behavior is likely to change 2023-02-12T21:36:21,408 in future versions of setuptools (and therefore is considered deprecated). 2023-02-12T21:36:21,408 Please make sure that 'funid.external.BLAST_Windows.doc' is included as a package by using 2023-02-12T21:36:21,408 the `packages` configuration field or the proper discovery methods 2023-02-12T21:36:21,408 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-12T21:36:21,408 instead of `find_packages(...)`/`find:`). 2023-02-12T21:36:21,408 You can read more about "package discovery" and "data files" on setuptools 2023-02-12T21:36:21,408 documentation page. 2023-02-12T21:36:21,409 !! 2023-02-12T21:36:21,409 check.warn(importable) 2023-02-12T21:36:21,409 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.FastTree_Windows' as data is deprecated, please list it in `packages`. 2023-02-12T21:36:21,409 !! 2023-02-12T21:36:21,410 ############################ 2023-02-12T21:36:21,410 # Package would be ignored # 2023-02-12T21:36:21,410 ############################ 2023-02-12T21:36:21,410 Python recognizes 'funid.external.FastTree_Windows' as an importable package, 2023-02-12T21:36:21,410 but it is not listed in the `packages` configuration of setuptools. 2023-02-12T21:36:21,410 'funid.external.FastTree_Windows' has been automatically added to the distribution only 2023-02-12T21:36:21,410 because it may contain data files, but this behavior is likely to change 2023-02-12T21:36:21,410 in future versions of setuptools (and therefore is considered deprecated). 2023-02-12T21:36:21,411 Please make sure that 'funid.external.FastTree_Windows' is included as a package by using 2023-02-12T21:36:21,411 the `packages` configuration field or the proper discovery methods 2023-02-12T21:36:21,411 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-12T21:36:21,411 instead of `find_packages(...)`/`find:`). 2023-02-12T21:36:21,411 You can read more about "package discovery" and "data files" on setuptools 2023-02-12T21:36:21,411 documentation page. 2023-02-12T21:36:21,412 !! 2023-02-12T21:36:21,412 check.warn(importable) 2023-02-12T21:36:21,412 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.RAxML_Windows' as data is deprecated, please list it in `packages`. 2023-02-12T21:36:21,412 !! 2023-02-12T21:36:21,413 ############################ 2023-02-12T21:36:21,413 # Package would be ignored # 2023-02-12T21:36:21,413 ############################ 2023-02-12T21:36:21,413 Python recognizes 'funid.external.RAxML_Windows' as an importable package, 2023-02-12T21:36:21,413 but it is not listed in the `packages` configuration of setuptools. 2023-02-12T21:36:21,413 'funid.external.RAxML_Windows' has been automatically added to the distribution only 2023-02-12T21:36:21,413 because it may contain data files, but this behavior is likely to change 2023-02-12T21:36:21,413 in future versions of setuptools (and therefore is considered deprecated). 2023-02-12T21:36:21,414 Please make sure that 'funid.external.RAxML_Windows' is included as a package by using 2023-02-12T21:36:21,414 the `packages` configuration field or the proper discovery methods 2023-02-12T21:36:21,414 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-12T21:36:21,414 instead of `find_packages(...)`/`find:`). 2023-02-12T21:36:21,414 You can read more about "package discovery" and "data files" on setuptools 2023-02-12T21:36:21,414 documentation page. 2023-02-12T21:36:21,415 !! 2023-02-12T21:36:21,415 check.warn(importable) 2023-02-12T21:36:21,415 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.mmseqs_Windows' as data is deprecated, please list it in `packages`. 2023-02-12T21:36:21,415 !! 2023-02-12T21:36:21,416 ############################ 2023-02-12T21:36:21,416 # Package would be ignored # 2023-02-12T21:36:21,416 ############################ 2023-02-12T21:36:21,416 Python recognizes 'funid.external.mmseqs_Windows' as an importable package, 2023-02-12T21:36:21,416 but it is not listed in the `packages` configuration of setuptools. 2023-02-12T21:36:21,416 'funid.external.mmseqs_Windows' has been automatically added to the distribution only 2023-02-12T21:36:21,416 because it may contain data files, but this behavior is likely to change 2023-02-12T21:36:21,417 in future versions of setuptools (and therefore is considered deprecated). 2023-02-12T21:36:21,417 Please make sure that 'funid.external.mmseqs_Windows' is included as a package by using 2023-02-12T21:36:21,417 the `packages` configuration field or the proper discovery methods 2023-02-12T21:36:21,417 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-12T21:36:21,417 instead of `find_packages(...)`/`find:`). 2023-02-12T21:36:21,417 You can read more about "package discovery" and "data files" on setuptools 2023-02-12T21:36:21,417 documentation page. 2023-02-12T21:36:21,418 !! 2023-02-12T21:36:21,418 check.warn(importable) 2023-02-12T21:36:21,418 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.mmseqs_Windows.bin' as data is deprecated, please list it in `packages`. 2023-02-12T21:36:21,418 !! 2023-02-12T21:36:21,419 ############################ 2023-02-12T21:36:21,419 # Package would be ignored # 2023-02-12T21:36:21,419 ############################ 2023-02-12T21:36:21,419 Python recognizes 'funid.external.mmseqs_Windows.bin' as an importable package, 2023-02-12T21:36:21,419 but it is not listed in the `packages` configuration of setuptools. 2023-02-12T21:36:21,419 'funid.external.mmseqs_Windows.bin' has been automatically added to the distribution only 2023-02-12T21:36:21,419 because it may contain data files, but this behavior is likely to change 2023-02-12T21:36:21,419 in future versions of setuptools (and therefore is considered deprecated). 2023-02-12T21:36:21,420 Please make sure that 'funid.external.mmseqs_Windows.bin' is included as a package by using 2023-02-12T21:36:21,420 the `packages` configuration field or the proper discovery methods 2023-02-12T21:36:21,420 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-12T21:36:21,420 instead of `find_packages(...)`/`find:`). 2023-02-12T21:36:21,420 You can read more about "package discovery" and "data files" on setuptools 2023-02-12T21:36:21,420 documentation page. 2023-02-12T21:36:21,421 !! 2023-02-12T21:36:21,421 check.warn(importable) 2023-02-12T21:36:21,421 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.mmseqs_Windows.examples' as data is deprecated, please list it in `packages`. 2023-02-12T21:36:21,421 !! 2023-02-12T21:36:21,421 ############################ 2023-02-12T21:36:21,422 # Package would be ignored # 2023-02-12T21:36:21,422 ############################ 2023-02-12T21:36:21,422 Python recognizes 'funid.external.mmseqs_Windows.examples' as an importable package, 2023-02-12T21:36:21,422 but it is not listed in the `packages` configuration of setuptools. 2023-02-12T21:36:21,422 'funid.external.mmseqs_Windows.examples' has been automatically added to the distribution only 2023-02-12T21:36:21,423 because it may contain data files, but this behavior is likely to change 2023-02-12T21:36:21,423 in future versions of setuptools (and therefore is considered deprecated). 2023-02-12T21:36:21,423 Please make sure that 'funid.external.mmseqs_Windows.examples' is included as a package by using 2023-02-12T21:36:21,423 the `packages` configuration field or the proper discovery methods 2023-02-12T21:36:21,423 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-12T21:36:21,423 instead of `find_packages(...)`/`find:`). 2023-02-12T21:36:21,424 You can read more about "package discovery" and "data files" on setuptools 2023-02-12T21:36:21,424 documentation page. 2023-02-12T21:36:21,424 !! 2023-02-12T21:36:21,425 check.warn(importable) 2023-02-12T21:36:21,425 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.mmseqs_Windows.matrices' as data is deprecated, please list it in `packages`. 2023-02-12T21:36:21,425 !! 2023-02-12T21:36:21,426 ############################ 2023-02-12T21:36:21,426 # Package would be ignored # 2023-02-12T21:36:21,426 ############################ 2023-02-12T21:36:21,426 Python recognizes 'funid.external.mmseqs_Windows.matrices' as an importable package, 2023-02-12T21:36:21,426 but it is not listed in the `packages` configuration of setuptools. 2023-02-12T21:36:21,426 'funid.external.mmseqs_Windows.matrices' has been automatically added to the distribution only 2023-02-12T21:36:21,427 because it may contain data files, but this behavior is likely to change 2023-02-12T21:36:21,427 in future versions of setuptools (and therefore is considered deprecated). 2023-02-12T21:36:21,427 Please make sure that 'funid.external.mmseqs_Windows.matrices' is included as a package by using 2023-02-12T21:36:21,427 the `packages` configuration field or the proper discovery methods 2023-02-12T21:36:21,427 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-12T21:36:21,427 instead of `find_packages(...)`/`find:`). 2023-02-12T21:36:21,428 You can read more about "package discovery" and "data files" on setuptools 2023-02-12T21:36:21,428 documentation page. 2023-02-12T21:36:21,428 !! 2023-02-12T21:36:21,429 check.warn(importable) 2023-02-12T21:36:21,429 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.mmseqs_Windows.util' as data is deprecated, please list it in `packages`. 2023-02-12T21:36:21,429 !! 2023-02-12T21:36:21,430 ############################ 2023-02-12T21:36:21,430 # Package would be ignored # 2023-02-12T21:36:21,430 ############################ 2023-02-12T21:36:21,431 Python recognizes 'funid.external.mmseqs_Windows.util' as an importable package, 2023-02-12T21:36:21,431 but it is not listed in the `packages` configuration of setuptools. 2023-02-12T21:36:21,431 'funid.external.mmseqs_Windows.util' has been automatically added to the distribution only 2023-02-12T21:36:21,431 because it may contain data files, but this behavior is likely to change 2023-02-12T21:36:21,431 in future versions of setuptools (and therefore is considered deprecated). 2023-02-12T21:36:21,432 Please make sure that 'funid.external.mmseqs_Windows.util' is included as a package by using 2023-02-12T21:36:21,432 the `packages` configuration field or the proper discovery methods 2023-02-12T21:36:21,432 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-12T21:36:21,432 instead of `find_packages(...)`/`find:`). 2023-02-12T21:36:21,432 You can read more about "package discovery" and "data files" on setuptools 2023-02-12T21:36:21,433 documentation page. 2023-02-12T21:36:21,433 !! 2023-02-12T21:36:21,433 check.warn(importable) 2023-02-12T21:36:21,433 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.test_dataset.penicillium' as data is deprecated, please list it in `packages`. 2023-02-12T21:36:21,433 !! 2023-02-12T21:36:21,434 ############################ 2023-02-12T21:36:21,434 # Package would be ignored # 2023-02-12T21:36:21,434 ############################ 2023-02-12T21:36:21,434 Python recognizes 'funid.test_dataset.penicillium' as an importable package, 2023-02-12T21:36:21,434 but it is not listed in the `packages` configuration of setuptools. 2023-02-12T21:36:21,434 'funid.test_dataset.penicillium' has been automatically added to the distribution only 2023-02-12T21:36:21,435 because it may contain data files, but this behavior is likely to change 2023-02-12T21:36:21,435 in future versions of setuptools (and therefore is considered deprecated). 2023-02-12T21:36:21,435 Please make sure that 'funid.test_dataset.penicillium' is included as a package by using 2023-02-12T21:36:21,435 the `packages` configuration field or the proper discovery methods 2023-02-12T21:36:21,435 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-12T21:36:21,435 instead of `find_packages(...)`/`find:`). 2023-02-12T21:36:21,436 You can read more about "package discovery" and "data files" on setuptools 2023-02-12T21:36:21,436 documentation page. 2023-02-12T21:36:21,436 !! 2023-02-12T21:36:21,436 check.warn(importable) 2023-02-12T21:36:21,436 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.test_dataset.penicillium.DB' as data is deprecated, please list it in `packages`. 2023-02-12T21:36:21,437 !! 2023-02-12T21:36:21,437 ############################ 2023-02-12T21:36:21,437 # Package would be ignored # 2023-02-12T21:36:21,437 ############################ 2023-02-12T21:36:21,437 Python recognizes 'funid.test_dataset.penicillium.DB' as an importable package, 2023-02-12T21:36:21,437 but it is not listed in the `packages` configuration of setuptools. 2023-02-12T21:36:21,438 'funid.test_dataset.penicillium.DB' has been automatically added to the distribution only 2023-02-12T21:36:21,438 because it may contain data files, but this behavior is likely to change 2023-02-12T21:36:21,438 in future versions of setuptools (and therefore is considered deprecated). 2023-02-12T21:36:21,438 Please make sure that 'funid.test_dataset.penicillium.DB' is included as a package by using 2023-02-12T21:36:21,438 the `packages` configuration field or the proper discovery methods 2023-02-12T21:36:21,438 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-12T21:36:21,438 instead of `find_packages(...)`/`find:`). 2023-02-12T21:36:21,439 You can read more about "package discovery" and "data files" on setuptools 2023-02-12T21:36:21,439 documentation page. 2023-02-12T21:36:21,439 !! 2023-02-12T21:36:21,439 check.warn(importable) 2023-02-12T21:36:21,439 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.test_dataset.penicillium.Query' as data is deprecated, please list it in `packages`. 2023-02-12T21:36:21,440 !! 2023-02-12T21:36:21,440 ############################ 2023-02-12T21:36:21,440 # Package would be ignored # 2023-02-12T21:36:21,440 ############################ 2023-02-12T21:36:21,440 Python recognizes 'funid.test_dataset.penicillium.Query' as an importable package, 2023-02-12T21:36:21,440 but it is not listed in the `packages` configuration of setuptools. 2023-02-12T21:36:21,441 'funid.test_dataset.penicillium.Query' has been automatically added to the distribution only 2023-02-12T21:36:21,441 because it may contain data files, but this behavior is likely to change 2023-02-12T21:36:21,441 in future versions of setuptools (and therefore is considered deprecated). 2023-02-12T21:36:21,441 Please make sure that 'funid.test_dataset.penicillium.Query' is included as a package by using 2023-02-12T21:36:21,441 the `packages` configuration field or the proper discovery methods 2023-02-12T21:36:21,441 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-12T21:36:21,441 instead of `find_packages(...)`/`find:`). 2023-02-12T21:36:21,442 You can read more about "package discovery" and "data files" on setuptools 2023-02-12T21:36:21,442 documentation page. 2023-02-12T21:36:21,442 !! 2023-02-12T21:36:21,442 check.warn(importable) 2023-02-12T21:36:21,442 creating build/lib/funid/external 2023-02-12T21:36:21,443 copying funid/external/MAFFT_LICENSE -> build/lib/funid/external 2023-02-12T21:36:21,443 copying funid/external/MAFFT_Windows.zip -> build/lib/funid/external 2023-02-12T21:36:21,911 copying funid/external/__init__.py -> build/lib/funid/external 2023-02-12T21:36:21,913 creating build/lib/funid/external/BLAST_Windows 2023-02-12T21:36:21,914 copying funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/lib/funid/external/BLAST_Windows 2023-02-12T21:36:21,920 creating build/lib/funid/external/BLAST_Windows/bin 2023-02-12T21:36:21,920 copying funid/external/BLAST_Windows/bin/blastn.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-02-12T21:36:22,242 copying funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/lib/funid/external/BLAST_Windows/bin 2023-02-12T21:36:22,244 copying funid/external/BLAST_Windows/bin/get_species_taxids.sh -> build/lib/funid/external/BLAST_Windows/bin 2023-02-12T21:36:22,246 copying funid/external/BLAST_Windows/bin/legacy_blast.pl -> build/lib/funid/external/BLAST_Windows/bin 2023-02-12T21:36:22,250 copying funid/external/BLAST_Windows/bin/makeblastdb.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-02-12T21:36:22,486 copying funid/external/BLAST_Windows/bin/nghttp2.dll -> build/lib/funid/external/BLAST_Windows/bin 2023-02-12T21:36:22,491 copying funid/external/BLAST_Windows/bin/update_blastdb.pl -> build/lib/funid/external/BLAST_Windows/bin 2023-02-12T21:36:22,494 creating build/lib/funid/external/BLAST_Windows/doc 2023-02-12T21:36:22,495 copying funid/external/BLAST_Windows/doc/README.txt -> build/lib/funid/external/BLAST_Windows/doc 2023-02-12T21:36:22,499 creating build/lib/funid/external/FastTree_Windows 2023-02-12T21:36:22,500 copying funid/external/FastTree_Windows/FastTree.exe -> build/lib/funid/external/FastTree_Windows 2023-02-12T21:36:22,509 creating build/lib/funid/external/Gblocks_Windows_0.91b 2023-02-12T21:36:22,509 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-12T21:36:22,510 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-12T21:36:22,518 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-12T21:36:22,520 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-12T21:36:22,523 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-02-12T21:36:22,524 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-02-12T21:36:22,528 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-12T21:36:22,529 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-12T21:36:22,531 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-12T21:36:22,534 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-12T21:36:22,536 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-12T21:36:22,539 creating build/lib/funid/external/RAxML_Windows 2023-02-12T21:36:22,540 copying funid/external/RAxML_Windows/GPL-3.0.txt -> build/lib/funid/external/RAxML_Windows 2023-02-12T21:36:22,543 copying funid/external/RAxML_Windows/README -> build/lib/funid/external/RAxML_Windows 2023-02-12T21:36:22,546 copying funid/external/RAxML_Windows/raxmlHPC-AVX.exe -> build/lib/funid/external/RAxML_Windows 2023-02-12T21:36:22,576 copying funid/external/RAxML_Windows/raxmlHPC-AVX2.exe -> build/lib/funid/external/RAxML_Windows 2023-02-12T21:36:22,607 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX.exe -> build/lib/funid/external/RAxML_Windows 2023-02-12T21:36:22,639 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/lib/funid/external/RAxML_Windows 2023-02-12T21:36:22,678 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS-SSE3.exe -> build/lib/funid/external/RAxML_Windows 2023-02-12T21:36:22,708 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS.exe -> build/lib/funid/external/RAxML_Windows 2023-02-12T21:36:22,743 copying funid/external/RAxML_Windows/raxmlHPC-SSE3.exe -> build/lib/funid/external/RAxML_Windows 2023-02-12T21:36:22,774 copying funid/external/RAxML_Windows/raxmlHPC.exe -> build/lib/funid/external/RAxML_Windows 2023-02-12T21:36:22,801 creating build/lib/funid/external/iqtree-2.1.3-Windows 2023-02-12T21:36:22,802 copying funid/external/iqtree-2.1.3-Windows/example.cf -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-02-12T21:36:22,853 copying funid/external/iqtree-2.1.3-Windows/example.nex -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-02-12T21:36:22,855 copying funid/external/iqtree-2.1.3-Windows/example.phy -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-02-12T21:36:22,858 copying funid/external/iqtree-2.1.3-Windows/models.nex -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-02-12T21:36:22,864 creating build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-02-12T21:36:22,864 copying funid/external/iqtree-2.1.3-Windows/bin/iqtree2-click.exe -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-02-12T21:36:23,063 copying funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-02-12T21:36:23,266 copying funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-02-12T21:36:23,296 creating build/lib/funid/external/mmseqs_Windows 2023-02-12T21:36:23,297 copying funid/external/mmseqs_Windows/LICENSE.md -> build/lib/funid/external/mmseqs_Windows 2023-02-12T21:36:23,300 copying funid/external/mmseqs_Windows/README.md -> build/lib/funid/external/mmseqs_Windows 2023-02-12T21:36:23,303 copying funid/external/mmseqs_Windows/mmseqs.bat -> build/lib/funid/external/mmseqs_Windows 2023-02-12T21:36:23,304 copying funid/external/mmseqs_Windows/userguide.pdf -> build/lib/funid/external/mmseqs_Windows 2023-02-12T21:36:23,400 creating build/lib/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:23,401 copying funid/external/mmseqs_Windows/bin/busybox.exe -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:23,417 copying funid/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:23,421 copying funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:23,426 copying funid/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:23,433 copying funid/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:23,481 copying funid/external/mmseqs_Windows/bin/cygwin1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:23,571 copying funid/external/mmseqs_Windows/bin/cygz.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:23,575 copying funid/external/mmseqs_Windows/bin/mmseqs.exe -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:23,831 creating build/lib/funid/external/mmseqs_Windows/examples 2023-02-12T21:36:23,832 copying funid/external/mmseqs_Windows/examples/QUERY.fasta -> build/lib/funid/external/mmseqs_Windows/examples 2023-02-12T21:36:23,840 creating build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,841 copying funid/external/mmseqs_Windows/matrices/PAM10.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,844 copying funid/external/mmseqs_Windows/matrices/PAM100.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,846 copying funid/external/mmseqs_Windows/matrices/PAM110.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,848 copying funid/external/mmseqs_Windows/matrices/PAM120.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,850 copying funid/external/mmseqs_Windows/matrices/PAM130.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,852 copying funid/external/mmseqs_Windows/matrices/PAM140.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,854 copying funid/external/mmseqs_Windows/matrices/PAM150.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,857 copying funid/external/mmseqs_Windows/matrices/PAM160.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,859 copying funid/external/mmseqs_Windows/matrices/PAM170.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,861 copying funid/external/mmseqs_Windows/matrices/PAM180.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,863 copying funid/external/mmseqs_Windows/matrices/PAM190.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,866 copying funid/external/mmseqs_Windows/matrices/PAM20.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,868 copying funid/external/mmseqs_Windows/matrices/PAM30.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,870 copying funid/external/mmseqs_Windows/matrices/PAM40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,872 copying funid/external/mmseqs_Windows/matrices/PAM50.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,874 copying funid/external/mmseqs_Windows/matrices/PAM60.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,876 copying funid/external/mmseqs_Windows/matrices/PAM70.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,879 copying funid/external/mmseqs_Windows/matrices/PAM80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,881 copying funid/external/mmseqs_Windows/matrices/PAM90.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,883 copying funid/external/mmseqs_Windows/matrices/VTML10.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,885 copying funid/external/mmseqs_Windows/matrices/VTML120.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,887 copying funid/external/mmseqs_Windows/matrices/VTML160.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,890 copying funid/external/mmseqs_Windows/matrices/VTML20.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,892 copying funid/external/mmseqs_Windows/matrices/VTML40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,894 copying funid/external/mmseqs_Windows/matrices/VTML80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,897 copying funid/external/mmseqs_Windows/matrices/blosum100.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,899 copying funid/external/mmseqs_Windows/matrices/blosum30.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,901 copying funid/external/mmseqs_Windows/matrices/blosum35.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,903 copying funid/external/mmseqs_Windows/matrices/blosum40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,906 copying funid/external/mmseqs_Windows/matrices/blosum45.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,908 copying funid/external/mmseqs_Windows/matrices/blosum50.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,910 copying funid/external/mmseqs_Windows/matrices/blosum55.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,912 copying funid/external/mmseqs_Windows/matrices/blosum60.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,914 copying funid/external/mmseqs_Windows/matrices/blosum62.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,917 copying funid/external/mmseqs_Windows/matrices/blosum65.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,919 copying funid/external/mmseqs_Windows/matrices/blosum70.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,921 copying funid/external/mmseqs_Windows/matrices/blosum75.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,924 copying funid/external/mmseqs_Windows/matrices/blosum80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,926 copying funid/external/mmseqs_Windows/matrices/blosum85.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,928 copying funid/external/mmseqs_Windows/matrices/blosum90.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,930 copying funid/external/mmseqs_Windows/matrices/blosum95.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,933 copying funid/external/mmseqs_Windows/matrices/nucleotide.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:23,934 creating build/lib/funid/external/mmseqs_Windows/util 2023-02-12T21:36:23,935 copying funid/external/mmseqs_Windows/util/bash-completion.sh -> build/lib/funid/external/mmseqs_Windows/util 2023-02-12T21:36:23,937 creating build/lib/funid/external/trimal.v1.2rev59 2023-02-12T21:36:23,938 creating build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-02-12T21:36:23,939 copying funid/external/trimal.v1.2rev59/trimAl/AUTHORS -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-02-12T21:36:23,941 copying funid/external/trimal.v1.2rev59/trimAl/CHANGELOG -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-02-12T21:36:23,943 copying funid/external/trimal.v1.2rev59/trimAl/LICENSE -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-02-12T21:36:23,946 copying funid/external/trimal.v1.2rev59/trimAl/README -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-02-12T21:36:23,948 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-02-12T21:36:23,949 copying funid/external/trimal.v1.2rev59/trimAl/bin/readal.exe -> build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-02-12T21:36:23,964 copying funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe -> build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-02-12T21:36:23,979 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:23,980 copying funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.clw -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:23,984 copying funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.msl -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:23,989 copying funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.phy2 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:23,992 copying funid/external/trimal.v1.2rev59/trimAl/dataset/blosum62.mat -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:23,994 copying funid/external/trimal.v1.2rev59/trimAl/dataset/example1.clw -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:23,996 copying funid/external/trimal.v1.2rev59/trimAl/dataset/example1.msl -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:23,998 copying funid/external/trimal.v1.2rev59/trimAl/dataset/example1.phy -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:24,000 copying funid/external/trimal.v1.2rev59/trimAl/dataset/fileset1 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:24,002 copying funid/external/trimal.v1.2rev59/trimAl/dataset/fileset2 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:24,004 copying funid/external/trimal.v1.2rev59/trimAl/dataset/fileset3 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:24,006 copying funid/external/trimal.v1.2rev59/trimAl/dataset/superAlignment1.phy2 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:24,047 copying funid/external/trimal.v1.2rev59/trimAl/dataset/superAlignment2.phy2 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:24,074 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,075 copying funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,080 copying funid/external/trimal.v1.2rev59/trimAl/source/alignment.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,083 copying funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,085 copying funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,087 copying funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,090 copying funid/external/trimal.v1.2rev59/trimAl/source/main.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,094 copying funid/external/trimal.v1.2rev59/trimAl/source/makefile -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,096 copying funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,099 copying funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,103 copying funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,105 copying funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,107 copying funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,110 copying funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,112 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,115 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,118 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,120 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,122 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,125 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,127 copying funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,130 copying funid/external/trimal.v1.2rev59/trimAl/source/utils.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,132 copying funid/external/trimal.v1.2rev59/trimAl/source/values.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:24,134 copying funid/data/Option_manager.xlsx -> build/lib/funid/data 2023-02-12T21:36:24,137 copying funid/data/genus_line.txt -> build/lib/funid/data 2023-02-12T21:36:24,141 creating build/lib/funid/test_dataset 2023-02-12T21:36:24,141 creating build/lib/funid/test_dataset/penicillium 2023-02-12T21:36:24,142 copying funid/test_dataset/penicillium/Options.config -> build/lib/funid/test_dataset/penicillium 2023-02-12T21:36:24,144 copying funid/test_dataset/penicillium/preset.yaml -> build/lib/funid/test_dataset/penicillium 2023-02-12T21:36:24,146 creating build/lib/funid/test_dataset/penicillium/DB 2023-02-12T21:36:24,147 copying funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/lib/funid/test_dataset/penicillium/DB 2023-02-12T21:36:24,160 creating build/lib/funid/test_dataset/penicillium/Query 2023-02-12T21:36:24,161 copying funid/test_dataset/penicillium/Query/Query.xlsx -> build/lib/funid/test_dataset/penicillium/Query 2023-02-12T21:36:24,166 creating build/lib/funid/preset 2023-02-12T21:36:24,167 copying funid/preset/accurate.yaml -> build/lib/funid/preset 2023-02-12T21:36:24,169 copying funid/preset/fast.yaml -> build/lib/funid/preset 2023-02-12T21:36:24,207 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-02-12T21:36:24,207 warnings.warn( 2023-02-12T21:36:24,237 installing to build/bdist.linux-armv7l/wheel 2023-02-12T21:36:24,238 running install 2023-02-12T21:36:24,262 running install_lib 2023-02-12T21:36:24,293 creating build/bdist.linux-armv7l 2023-02-12T21:36:24,293 creating build/bdist.linux-armv7l/wheel 2023-02-12T21:36:24,295 creating build/bdist.linux-armv7l/wheel/funid 2023-02-12T21:36:24,297 creating build/bdist.linux-armv7l/wheel/funid/test_dataset 2023-02-12T21:36:24,298 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-02-12T21:36:24,300 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/Query 2023-02-12T21:36:24,301 copying build/lib/funid/test_dataset/penicillium/Query/Query.xlsx -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/Query 2023-02-12T21:36:24,306 copying build/lib/funid/test_dataset/penicillium/preset.yaml -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-02-12T21:36:24,308 copying build/lib/funid/test_dataset/penicillium/Options.config -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-02-12T21:36:24,310 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/DB 2023-02-12T21:36:24,311 copying build/lib/funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/DB 2023-02-12T21:36:24,321 creating build/bdist.linux-armv7l/wheel/funid/preset 2023-02-12T21:36:24,322 copying build/lib/funid/preset/accurate.yaml -> build/bdist.linux-armv7l/wheel/funid/preset 2023-02-12T21:36:24,324 copying build/lib/funid/preset/fast.yaml -> build/bdist.linux-armv7l/wheel/funid/preset 2023-02-12T21:36:24,326 copying build/lib/funid/FunID_GUI.py -> build/bdist.linux-armv7l/wheel/funid 2023-02-12T21:36:24,329 creating build/bdist.linux-armv7l/wheel/funid/external 2023-02-12T21:36:24,330 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b 2023-02-12T21:36:24,331 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-12T21:36:24,332 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-12T21:36:24,335 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-12T21:36:24,337 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-12T21:36:24,338 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-12T21:36:24,341 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-12T21:36:24,343 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-12T21:36:24,345 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-12T21:36:24,348 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-02-12T21:36:24,349 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-02-12T21:36:24,353 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-12T21:36:24,364 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-02-12T21:36:24,365 copying build/lib/funid/external/mmseqs_Windows/LICENSE.md -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-02-12T21:36:24,368 copying build/lib/funid/external/mmseqs_Windows/mmseqs.bat -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-02-12T21:36:24,370 copying build/lib/funid/external/mmseqs_Windows/README.md -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-02-12T21:36:24,373 copying build/lib/funid/external/mmseqs_Windows/userguide.pdf -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-02-12T21:36:24,452 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/examples 2023-02-12T21:36:24,452 copying build/lib/funid/external/mmseqs_Windows/examples/QUERY.fasta -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/examples 2023-02-12T21:36:24,463 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,464 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum50.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,466 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,468 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum35.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,469 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM130.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,471 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum55.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,473 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum65.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,475 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM70.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,477 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML20.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,479 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM110.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,481 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum62.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,483 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM170.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,485 copying build/lib/funid/external/mmseqs_Windows/matrices/nucleotide.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,487 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM30.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,489 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum100.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,491 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,493 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM180.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,495 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum70.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,497 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,499 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM90.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,501 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum90.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,503 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum30.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,505 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM120.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,507 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum60.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,509 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM50.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,511 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum85.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,513 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM190.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,515 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,517 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM10.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,519 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM160.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,521 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM20.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,523 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML120.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,525 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM100.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,527 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,529 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM60.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,530 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum75.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,532 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML10.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,534 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,537 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM150.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,539 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM140.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,541 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum45.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,543 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum95.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,545 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML160.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-12T21:36:24,547 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/util 2023-02-12T21:36:24,548 copying build/lib/funid/external/mmseqs_Windows/util/bash-completion.sh -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/util 2023-02-12T21:36:24,551 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:24,552 copying build/lib/funid/external/mmseqs_Windows/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:24,630 copying build/lib/funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:24,634 copying build/lib/funid/external/mmseqs_Windows/bin/busybox.exe -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:24,650 copying build/lib/funid/external/mmseqs_Windows/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:24,654 copying build/lib/funid/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:24,690 copying build/lib/funid/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:24,697 copying build/lib/funid/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:24,701 copying build/lib/funid/external/mmseqs_Windows/bin/mmseqs.exe -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-12T21:36:24,943 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows 2023-02-12T21:36:24,944 copying build/lib/funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows 2023-02-12T21:36:24,949 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/doc 2023-02-12T21:36:24,949 copying build/lib/funid/external/BLAST_Windows/doc/README.txt -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/doc 2023-02-12T21:36:24,963 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-12T21:36:24,964 copying build/lib/funid/external/BLAST_Windows/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-12T21:36:24,968 copying build/lib/funid/external/BLAST_Windows/bin/get_species_taxids.sh -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-12T21:36:24,970 copying build/lib/funid/external/BLAST_Windows/bin/blastn.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-12T21:36:25,312 copying build/lib/funid/external/BLAST_Windows/bin/nghttp2.dll -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-12T21:36:25,317 copying build/lib/funid/external/BLAST_Windows/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-12T21:36:25,320 copying build/lib/funid/external/BLAST_Windows/bin/makeblastdb.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-12T21:36:25,546 copying build/lib/funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-12T21:36:25,550 creating build/bdist.linux-armv7l/wheel/funid/external/FastTree_Windows 2023-02-12T21:36:25,550 copying build/lib/funid/external/FastTree_Windows/FastTree.exe -> build/bdist.linux-armv7l/wheel/funid/external/FastTree_Windows 2023-02-12T21:36:25,560 copying build/lib/funid/external/MAFFT_Windows.zip -> build/bdist.linux-armv7l/wheel/funid/external 2023-02-12T21:36:26,058 copying build/lib/funid/external/MAFFT_LICENSE -> build/bdist.linux-armv7l/wheel/funid/external 2023-02-12T21:36:26,061 copying build/lib/funid/external/__init__.py -> build/bdist.linux-armv7l/wheel/funid/external 2023-02-12T21:36:26,063 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59 2023-02-12T21:36:26,064 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-02-12T21:36:26,066 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,067 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,071 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,073 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,075 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,077 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,079 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,082 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/makefile -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,083 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,085 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/values.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,087 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,091 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,094 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/alignment.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,096 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,098 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,100 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,103 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,105 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,108 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,110 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/main.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,115 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,117 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/utils.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,120 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-12T21:36:26,122 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/README -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-02-12T21:36:26,124 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/CHANGELOG -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-02-12T21:36:26,126 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:26,127 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/superAlignment2.phy2 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:26,158 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.msl -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:26,162 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/superAlignment1.phy2 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:26,212 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.clw -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:26,216 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/fileset2 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:26,218 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/fileset3 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:26,219 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/example1.phy -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:26,221 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/blosum62.mat -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:26,223 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/example1.msl -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:26,225 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/fileset1 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:26,227 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/example1.clw -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:26,229 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.phy2 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-12T21:36:26,232 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/AUTHORS -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-02-12T21:36:26,235 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/LICENSE -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-02-12T21:36:26,238 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-02-12T21:36:26,239 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/bin/readal.exe -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-02-12T21:36:26,255 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-02-12T21:36:26,271 creating build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-02-12T21:36:26,272 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.cf -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-02-12T21:36:26,321 copying build/lib/funid/external/iqtree-2.1.3-Windows/models.nex -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-02-12T21:36:26,326 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.nex -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-02-12T21:36:26,327 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.phy -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-02-12T21:36:26,331 creating build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-02-12T21:36:26,332 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-02-12T21:36:26,358 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/iqtree2-click.exe -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-02-12T21:36:26,575 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-02-12T21:36:26,768 creating build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-12T21:36:26,769 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-12T21:36:26,801 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-12T21:36:26,836 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-12T21:36:26,868 copying build/lib/funid/external/RAxML_Windows/README -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-12T21:36:26,870 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-AVX2.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-12T21:36:26,900 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-AVX.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-12T21:36:26,933 copying build/lib/funid/external/RAxML_Windows/GPL-3.0.txt -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-12T21:36:26,936 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-SSE3.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-12T21:36:26,971 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS-SSE3.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-12T21:36:27,005 copying build/lib/funid/external/RAxML_Windows/raxmlHPC.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-12T21:36:27,038 copying build/lib/funid/main.py -> build/bdist.linux-armv7l/wheel/funid 2023-02-12T21:36:27,041 creating build/bdist.linux-armv7l/wheel/funid/data 2023-02-12T21:36:27,042 copying build/lib/funid/data/genus_line.txt -> build/bdist.linux-armv7l/wheel/funid/data 2023-02-12T21:36:27,045 copying build/lib/funid/data/Option_manager.xlsx -> build/bdist.linux-armv7l/wheel/funid/data 2023-02-12T21:36:27,047 copying build/lib/funid/data/__init__.py -> build/bdist.linux-armv7l/wheel/funid/data 2023-02-12T21:36:27,049 copying build/lib/funid/__init__.py -> build/bdist.linux-armv7l/wheel/funid 2023-02-12T21:36:27,051 creating build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,052 copying build/lib/funid/src/cluster.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,054 copying build/lib/funid/src/modeltest.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,057 copying build/lib/funid/src/multigene.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,059 copying build/lib/funid/src/logics.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,061 copying build/lib/funid/src/opt_generator.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,062 copying build/lib/funid/src/ncbi.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,064 copying build/lib/funid/src/reporter.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,068 copying build/lib/funid/src/manage_input.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,070 copying build/lib/funid/src/logger.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,072 copying build/lib/funid/src/save.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,074 copying build/lib/funid/src/hasher.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,076 copying build/lib/funid/src/tree_interpretation_pipe.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,078 copying build/lib/funid/src/tree.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,081 copying build/lib/funid/src/ext.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,083 copying build/lib/funid/src/validate_option.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,087 copying build/lib/funid/src/patch.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,089 copying build/lib/funid/src/trim.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,091 copying build/lib/funid/src/dataset.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,093 copying build/lib/funid/src/__init__.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,094 copying build/lib/funid/src/tool.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,097 copying build/lib/funid/src/validation.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,098 copying build/lib/funid/src/search.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,101 copying build/lib/funid/src/initialize.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,103 copying build/lib/funid/src/tree_interpretation.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,106 copying build/lib/funid/src/command.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,109 copying build/lib/funid/src/align.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-12T21:36:27,111 running install_egg_info 2023-02-12T21:36:27,145 Copying FunID.egg-info to build/bdist.linux-armv7l/wheel/FunID-0.3.3.1-py3.9.egg-info 2023-02-12T21:36:27,160 running install_scripts 2023-02-12T21:36:27,284 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-02-12T21:36:27,289 creating build/bdist.linux-armv7l/wheel/FunID-0.3.3.1.dist-info/WHEEL 2023-02-12T21:36:27,292 creating '/tmp/pip-wheel-_6si4z55/FunID-0.3.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-02-12T21:36:27,296 adding 'funid/FunID_GUI.py' 2023-02-12T21:36:27,298 adding 'funid/__init__.py' 2023-02-12T21:36:27,299 adding 'funid/main.py' 2023-02-12T21:36:27,303 adding 'funid/data/Option_manager.xlsx' 2023-02-12T21:36:27,304 adding 'funid/data/__init__.py' 2023-02-12T21:36:27,312 adding 'funid/data/genus_line.txt' 2023-02-12T21:36:27,319 adding 'funid/external/MAFFT_LICENSE' 2023-02-12T21:36:30,440 adding 'funid/external/MAFFT_Windows.zip' 2023-02-12T21:36:30,609 adding 'funid/external/__init__.py' 2023-02-12T21:36:30,618 adding 'funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe' 2023-02-12T21:36:33,608 adding 'funid/external/BLAST_Windows/bin/blastn.exe' 2023-02-12T21:36:33,714 adding 'funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py' 2023-02-12T21:36:33,716 adding 'funid/external/BLAST_Windows/bin/get_species_taxids.sh' 2023-02-12T21:36:33,720 adding 'funid/external/BLAST_Windows/bin/legacy_blast.pl' 2023-02-12T21:36:35,798 adding 'funid/external/BLAST_Windows/bin/makeblastdb.exe' 2023-02-12T21:36:35,897 adding 'funid/external/BLAST_Windows/bin/nghttp2.dll' 2023-02-12T21:36:35,901 adding 'funid/external/BLAST_Windows/bin/update_blastdb.pl' 2023-02-12T21:36:35,903 adding 'funid/external/BLAST_Windows/doc/README.txt' 2023-02-12T21:36:35,960 adding 'funid/external/FastTree_Windows/FastTree.exe' 2023-02-12T21:36:36,001 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe' 2023-02-12T21:36:36,004 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir' 2023-02-12T21:36:36,005 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths' 2023-02-12T21:36:36,010 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html' 2023-02-12T21:36:36,013 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir' 2023-02-12T21:36:36,015 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir' 2023-02-12T21:36:36,016 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir' 2023-02-12T21:36:36,019 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir' 2023-02-12T21:36:36,026 adding 'funid/external/RAxML_Windows/GPL-3.0.txt' 2023-02-12T21:36:36,027 adding 'funid/external/RAxML_Windows/README' 2023-02-12T21:36:36,291 adding 'funid/external/RAxML_Windows/raxmlHPC-AVX.exe' 2023-02-12T21:36:36,563 adding 'funid/external/RAxML_Windows/raxmlHPC-AVX2.exe' 2023-02-12T21:36:36,867 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX.exe' 2023-02-12T21:36:37,173 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe' 2023-02-12T21:36:37,483 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS-SSE3.exe' 2023-02-12T21:36:37,784 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS.exe' 2023-02-12T21:36:38,063 adding 'funid/external/RAxML_Windows/raxmlHPC-SSE3.exe' 2023-02-12T21:36:38,332 adding 'funid/external/RAxML_Windows/raxmlHPC.exe' 2023-02-12T21:36:38,425 adding 'funid/external/iqtree-2.1.3-Windows/example.cf' 2023-02-12T21:36:38,440 adding 'funid/external/iqtree-2.1.3-Windows/example.nex' 2023-02-12T21:36:38,453 adding 'funid/external/iqtree-2.1.3-Windows/example.phy' 2023-02-12T21:36:38,483 adding 'funid/external/iqtree-2.1.3-Windows/models.nex' 2023-02-12T21:36:40,220 adding 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'FunID-0.3.3.1.dist-info/RECORD' 2023-02-12T21:36:48,905 removing build/bdist.linux-armv7l/wheel 2023-02-12T21:36:49,169 Building wheel for funid (setup.py): finished with status 'done' 2023-02-12T21:36:50,704 Created wheel for funid: filename=FunID-0.3.3.1-py3-none-any.whl size=65427210 sha256=3f87f5ecaa7ed8c6c00a3d76dc520e16293e70f38d878a85136fe28b96dcbbc5 2023-02-12T21:36:50,705 Stored in directory: /tmp/pip-ephem-wheel-cache-oqxvo07p/wheels/2c/11/74/653c0a6368edb903b2a1718c223cad3b1da3e135e87d0e9700 2023-02-12T21:36:50,755 Successfully built funid 2023-02-12T21:36:52,665 Removed build tracker: '/tmp/pip-build-tracker-fzcbixd7'