2023-02-15T04:36:01,584 Created temporary directory: /tmp/pip-ephem-wheel-cache-nu39wodd
2023-02-15T04:36:01,589 Created temporary directory: /tmp/pip-build-tracker-whhzvfp6
2023-02-15T04:36:01,589 Initialized build tracking at /tmp/pip-build-tracker-whhzvfp6
2023-02-15T04:36:01,590 Created build tracker: /tmp/pip-build-tracker-whhzvfp6
2023-02-15T04:36:01,590 Entered build tracker: /tmp/pip-build-tracker-whhzvfp6
2023-02-15T04:36:01,591 Created temporary directory: /tmp/pip-wheel-134zgrsu
2023-02-15T04:36:01,599 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-15T04:36:01,605 Created temporary directory: /tmp/pip-ephem-wheel-cache-jw98osu4
2023-02-15T04:36:01,655 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-15T04:36:01,662 2 location(s) to search for versions of gtdbtk:
2023-02-15T04:36:01,662 * https://pypi.org/simple/gtdbtk/
2023-02-15T04:36:01,662 * https://www.piwheels.org/simple/gtdbtk/
2023-02-15T04:36:01,663 Fetching project page and analyzing links: https://pypi.org/simple/gtdbtk/
2023-02-15T04:36:01,664 Getting page https://pypi.org/simple/gtdbtk/
2023-02-15T04:36:01,667 Found index url https://pypi.org/simple
2023-02-15T04:36:01,853 Fetched page https://pypi.org/simple/gtdbtk/ as application/vnd.pypi.simple.v1+json
2023-02-15T04:36:01,882   Found link https://files.pythonhosted.org/packages/77/1d/a47e727062761ea6108b1be340d24c711131df11415d82cdb30bcb51738b/gtdbtk-0.0.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.1
2023-02-15T04:36:01,882   Found link https://files.pythonhosted.org/packages/78/fc/021b3e4fc9fc1a8d8596ccf703ee4f5abd97b496bc714a9bfc69332e913e/gtdbtk-0.0.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.2
2023-02-15T04:36:01,883   Found link https://files.pythonhosted.org/packages/b8/55/a62d05d6a2d35a6e9f2247586a77f8033eaeeffb8e8d4db6511252c8a59b/gtdbtk-0.0.3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.3
2023-02-15T04:36:01,884   Found link https://files.pythonhosted.org/packages/88/3d/2dedbfdce682d2c73aebb1182835889222aecefac4072e205e885b601be5/gtdbtk-0.0.4b0.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b0
2023-02-15T04:36:01,885   Found link https://files.pythonhosted.org/packages/e7/21/7b30d68267c9ed81610a37c8fdac4b53f7090f9511d963a54754ec49d521/gtdbtk-0.0.4b1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b1
2023-02-15T04:36:01,885   Found link https://files.pythonhosted.org/packages/d1/f0/970559d46438a2004ccaa4199491188afc1bb13304fb899b26a3530ed841/gtdbtk-0.0.4b2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b2
2023-02-15T04:36:01,886   Found link https://files.pythonhosted.org/packages/e0/47/a9610df19e2bcf2782fc1ee29e5f85452b20a22d6f80581a23e3c0111c52/gtdbtk-0.0.4b3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b3
2023-02-15T04:36:01,887   Found link https://files.pythonhosted.org/packages/bf/f1/ebd7ba5d9ac68fc00ec0f7a69b52111d945a70f836dd4ba975600b088a98/gtdbtk-0.0.5.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.5
2023-02-15T04:36:01,887   Found link https://files.pythonhosted.org/packages/ca/7c/fc51570da6722bd31e310bb1ac218cb9d839dfae5d5e94d0ea3666402812/gtdbtk-0.0.6.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.6
2023-02-15T04:36:01,888   Found link https://files.pythonhosted.org/packages/68/72/fdfc81336d6a94e8f286f562bc265e5d215f653f5d08d91689b6cb69a6cb/gtdbtk-0.0.7.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.7
2023-02-15T04:36:01,889   Found link https://files.pythonhosted.org/packages/00/bb/2c2c4a00d4ca637be0daa7ac6bca99011afa8c42de7148c4e5dd6fc28141/gtdbtk-0.0.8b1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.8b1
2023-02-15T04:36:01,890   Found link https://files.pythonhosted.org/packages/c0/3e/4a7f207340198fb69fe0764236f9cfb562840796cca457317024f1bcfb65/gtdbtk-0.1.0.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.0
2023-02-15T04:36:01,891   Found link https://files.pythonhosted.org/packages/5f/c1/f028b36863e2b27d0a4191f4033eec25cfff898abceb97b0ccfa1352e1f0/gtdbtk-0.1.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.1
2023-02-15T04:36:01,891   Found link https://files.pythonhosted.org/packages/1f/40/6a7cae5b58902ff5add1db17bf0dd24857bfedacd73f47096e3ef5789899/gtdbtk-0.1.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.2
2023-02-15T04:36:01,892   Found link https://files.pythonhosted.org/packages/e4/e7/481464381afdf57da5e920a1713a73627373583c57d292ad7155e8b4f32c/gtdbtk-0.1.3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.3
2023-02-15T04:36:01,893   Found link https://files.pythonhosted.org/packages/29/6d/e9dc39898e8cc79fe54b5109ca7ed03842bcab51368cc6dbf05c2b2c6f39/gtdbtk-0.1.6.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.6
2023-02-15T04:36:01,894   Found link https://files.pythonhosted.org/packages/db/c8/b052434152065efc0d209401041a7f7ba51c153832f4fe0a424fe0990cfa/gtdbtk-0.2.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.2.1
2023-02-15T04:36:01,894   Found link https://files.pythonhosted.org/packages/0a/74/8cbe8afea3aa0f7d6b948210b8937f3edcf541b3212cae2ce6aa560276a9/gtdbtk-0.2.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.2.2
2023-02-15T04:36:01,895   Found link https://files.pythonhosted.org/packages/45/de/019db6634299b4086a49646891c9e99347e2908713baa14641e15687e4af/gtdbtk-0.3.0.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.0
2023-02-15T04:36:01,896   Found link https://files.pythonhosted.org/packages/6e/46/14181ed7f443fd8f70353250d09c94d2a2d867e68cc687167a8546ef4926/gtdbtk-0.3.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.1
2023-02-15T04:36:01,897   Found link https://files.pythonhosted.org/packages/91/64/06be7ada30b1895a1205feac310a92929a5e135b5821036632aa36d1354c/gtdbtk-0.3.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.2
2023-02-15T04:36:01,897   Found link https://files.pythonhosted.org/packages/7d/90/a62620e2c5c5799d0271f097a83c356dd7d458bf85651da24a353e93d669/gtdbtk-0.3.3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.3
2023-02-15T04:36:01,899   Found link https://files.pythonhosted.org/packages/48/b3/ce025d246df8196fbb18ac4ef9b3f09b430d8a71627b3b49dd7f33647b95/gtdbtk-1.0.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.0.0
2023-02-15T04:36:01,900   Found link https://files.pythonhosted.org/packages/87/bc/dcfb65d65adda7952adf9251cb7e86c2cc3143804932d2a6cbdc04f4249e/gtdbtk-1.0.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.0.1
2023-02-15T04:36:01,902   Found link https://files.pythonhosted.org/packages/cd/3b/c70443baef1058d1955bfe476d521a4ad423958bf349527cf75cb3e892a5/gtdbtk-1.0.2.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.0.2
2023-02-15T04:36:01,903   Found link https://files.pythonhosted.org/packages/f0/28/78411977ec02799a3a16a08ba9ea036851fd23d26126a583d7a4dbd7e129/gtdbtk-1.1.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.1.0
2023-02-15T04:36:01,905   Found link https://files.pythonhosted.org/packages/68/d0/bcdb38880ed7e0d0ae563c62b1f192b1d77a35a0d00b193f9e5a01817454/gtdbtk-1.1.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.1.1
2023-02-15T04:36:01,905   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/f3/56/60ff2a296580b4e5741592ad17ca874ba024f7f5c9c225d7cadfb9cfd54f/gtdbtk-1.2.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:01,907   Found link https://files.pythonhosted.org/packages/fd/9d/2060d8cdefde94050a969360e8b1343d6c441b35f57ca3000ec2b8c0c950/gtdbtk-1.2.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.2.0
2023-02-15T04:36:01,907   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/ef/47/293fd1fa9548d876d0da7f2a99a3784614850d84f9667dc08c1d28a50737/gtdbtk-1.3.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:01,909   Found link https://files.pythonhosted.org/packages/f0/bf/775eb9ba5e42ab33977228a3121db7f66c8b8ac422e0c8df7a51e14410b3/gtdbtk-1.3.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.3.0
2023-02-15T04:36:01,909   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/b9/4c/21a649b385d9c95f1da010261b1160334907d6192248b5b42ff2ebdafeb7/gtdbtk-1.4.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:01,911   Found link https://files.pythonhosted.org/packages/b7/6e/ff1416c31ab6b7034ac774ebe49b840e10f5ca1fd6469dc2e6b784718aeb/gtdbtk-1.4.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.4.0
2023-02-15T04:36:01,911   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/57/13/fc0f865fde7d1732821f7fde3f5ba91081128691bfb31420e1cc580f4cef/gtdbtk-1.4.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:01,913   Found link https://files.pythonhosted.org/packages/a0/e4/c7425e61d690b4eb1d04b586a76b760b11e1be576d0d2baacf0d7b341d21/gtdbtk-1.4.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.4.1
2023-02-15T04:36:01,913   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/50/13/0a4cca6299f809c1c0e760c735053137c3a4aff2b646b91b121e203203ee/gtdbtk-1.5.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:01,915   Found link https://files.pythonhosted.org/packages/e7/df/64901f44cf635a6bbed28f66a13c7dbe0ac4c29afc28e07cd5d9b1730efe/gtdbtk-1.5.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.5.0
2023-02-15T04:36:01,915   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/f3/17/383985ce3c67ab7c7d83753cc6792f4ddbce4c7bc5728765c9000b116962/gtdbtk-1.5.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:01,917   Found link https://files.pythonhosted.org/packages/46/7d/42643d2bed1eb3406a32c8cedd4be15aa03a47a29d09c2be1498b0602428/gtdbtk-1.5.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.5.1
2023-02-15T04:36:01,917   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/34/43/30519d579e26c5b2bf8370bcdc49e4b7805bf0445b766f54459e2fa1560c/gtdbtk-1.6.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:01,919   Found link https://files.pythonhosted.org/packages/e5/0b/c809fdd5da93a76edcb388c8ce5bf0f9836df548fb5e73c1bd4a90de0c3c/gtdbtk-1.6.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.6.0
2023-02-15T04:36:01,919   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/4a/cc/631e798a8f921fc6c504591472e34a04c2868f7ce7fdfc1b3c1cb5a81c05/gtdbtk-1.7.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:01,921   Found link https://files.pythonhosted.org/packages/a0/eb/859b20c3adeb96ca72f242bc31cd30319c2bd6e4d130c13aba0b76d2fe34/gtdbtk-1.7.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.7.0
2023-02-15T04:36:01,921   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/c5/ac/fd59f08a268eab7c094ee1e9b14004c591c3477b11628c9e08aaad2bbaa6/gtdbtk-2.0.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:01,922   Found link https://files.pythonhosted.org/packages/7e/43/9b3c861f07fa420e9595fdf5f2261c0d1519a01f9e994b6445fb2e263d98/gtdbtk-2.0.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.0.0
2023-02-15T04:36:01,923   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/b8/78/853a62dd98c99a31191df3f6d130834cad0ae00c5159d32cb9667af48943/gtdbtk-2.1.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:01,925   Found link https://files.pythonhosted.org/packages/5b/b7/6bc0bb66462d3b669ee1e5d39234efec662eed17ea2afa11df918dbe2552/gtdbtk-2.1.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.1.0
2023-02-15T04:36:01,925   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/b9/f4/afbebf8c28c3717584100d8d8d924259314c972abb581d2eb0424a021517/gtdbtk-2.1.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:01,926   Found link https://files.pythonhosted.org/packages/71/9a/ae98b3aca31a1106fbcf01b4567184e6a8fa5abbb74749e287c3f5238ad8/gtdbtk-2.1.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.1.1
2023-02-15T04:36:01,927   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/30/e5/e497c084510ce4c0898ddb2df2f7d938b5d63de0e26cb42f11600c0c9559/gtdbtk-2.2.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:01,928   Found link https://files.pythonhosted.org/packages/6d/d7/60f98a610b01d35736088897697c538bbe2f83aa091e6d5cca1a84122ad0/gtdbtk-2.2.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.0
2023-02-15T04:36:01,929   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/3c/ad/d6016544dd8d2dc164569b328307dc09e7029112016b87941180cd3fd3e3/gtdbtk-2.2.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:01,930   Found link https://files.pythonhosted.org/packages/9c/ce/b46fe9815e149aa238471118f5ffb50d67eab2b4c8a94d1fe3a480052166/gtdbtk-2.2.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.1
2023-02-15T04:36:01,931   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/48/bc/6f4c477f7fe9d4d67abd5a2843c88533570cd482a63e35c1f2589393126f/gtdbtk-2.2.2-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:01,932   Found link https://files.pythonhosted.org/packages/ee/bb/539be0884928b9906f9a4ffb0118e4501f6f203afda9fe1a5c40b231d150/gtdbtk-2.2.2.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.2
2023-02-15T04:36:01,933   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/02/43/0ba90c5591bea3ec5f2340724f0b5a12da4fe2cebe5a79022be66b406917/gtdbtk-2.2.3-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:01,934   Found link https://files.pythonhosted.org/packages/51/6d/8a161d447e0d3db86dffe2c684272be3969254b056ef819a270a10e5bdbd/gtdbtk-2.2.3.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.3
2023-02-15T04:36:01,935 Fetching project page and analyzing links: https://www.piwheels.org/simple/gtdbtk/
2023-02-15T04:36:01,936 Getting page https://www.piwheels.org/simple/gtdbtk/
2023-02-15T04:36:01,938 Found index url https://www.piwheels.org/simple
2023-02-15T04:36:02,167 Fetched page https://www.piwheels.org/simple/gtdbtk/ as text/html
2023-02-15T04:36:02,197   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.2-py3-none-any.whl#sha256=b2a2470befeb113d05b7e439d383b55fa4a7bf604d4de4b947eceb0cdd11feb9 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,197   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.1-py3-none-any.whl#sha256=2cf336d7981cf9e722bb1ab210ad70a0fdc421364d66f121ba0ed2764f49d831 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,198   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.1.1-py3-none-any.whl#sha256=9ab09353c8901bf41d042f5dd678b8e4a0b44bd88b9edf99c113095e719fa689 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,199   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.1.0-py3-none-any.whl#sha256=1a3aba4f0aa3916d66fa1b335bc75f3e4275f208aabcf8f52b16cc31c8a28251 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,199   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.0.0-py3-none-any.whl#sha256=3f62231589bd3b33d50492de0f098ded08e2d24736ebe3517140beffd23c6095 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,200   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.7.0-py3-none-any.whl#sha256=1cec9664f2cdcf1d97bc8eb584bfc3973bd54674846aa4af6320e2db8866e97d (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,200   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.6.0-py3-none-any.whl#sha256=b5a207597ad94381e816d097e1e1925df4e5570643272ed7b76db5dd3001ebde (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,201   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.5.1-py3-none-any.whl#sha256=ed5d3a99e31ba670781bfdc0b376d6269e1d683d7385d3508bdfd574f1a16b5c (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,201   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.5.0-py3-none-any.whl#sha256=4d5f2ecca5c2f1e7b279ff1bba63edd378e64f1195c8da6f8d2fe1c37bb1a02e (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,202   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.4.1-py3-none-any.whl#sha256=5bf60e34c9532ee96689ca34330f5f4ad6d344bac28ebdd1925ee4d0326e4345 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,202   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.4.0-py3-none-any.whl#sha256=ead9eb6d9df9b31e5b067e8f9993ef52975d454ab8685e1df66d9e201ac5c596 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,203   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.3.0-py3-none-any.whl#sha256=d7e3fccd83e155a4c737695d252e66a9076b236bed81fc4c193646bd2888ea79 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,203   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.2.0-py3-none-any.whl#sha256=6f16eed44889ee0d388564ccd30cce43c7059cb71fea4178339085d5cda33d84 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,204   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.1.1-py3-none-any.whl#sha256=6015c83a790205e33f5f1a6b18e6dc3f59ed21785e21e2335e333d2a0c2b6149 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,204   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.1.0-py3-none-any.whl#sha256=74644ddd23fa626c60834924b75ff2461cfe146825dfe8cb56ba7aa87f80065c (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,205   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.0.2-py3-none-any.whl#sha256=bcb2aff77a5de8e7ee657b155c07cef65e54ed4c69e75f792746eeb1a116d7d8 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,205   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.0.1-py3-none-any.whl#sha256=4f17b5e884096c03286b38720b63f262572ca3f8c6fcce36fb3a543aa1c45840 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,206   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.0.0-py3-none-any.whl#sha256=3206ab5f69c97d1c89cea39475c4e02c9af7414d02575fde530a36c099cb8f23 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-02-15T04:36:02,206   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.3-py3-none-any.whl#sha256=053ec454ce316e998d7be98ccd60e1e66e3a77dec93328e15b07f05ad137b0a6 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,207   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.2-py3-none-any.whl#sha256=083ef29deb14040d3795f158fa610a234aabb50077070bbe5a4f4daf32ba70a7 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,207   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.1-py3-none-any.whl#sha256=7c6b5d5774b8c786683f0843a0d30b610640a0ae08e45dac6d1ee6a6145ea7ba (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,208   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.0-py3-none-any.whl#sha256=967042d7d0fb425c296cb4370268936f5efab1086c93bba32aa75b05eb61d5eb (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,208   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.2.2-py3-none-any.whl#sha256=0f2f51b4c73c58071c0e693201460c6b3d67d4a956368ed7b2df1555a9a2d5e3 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,209   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.2.1-py3-none-any.whl#sha256=c3dda689b923a8788e648223335928c657b054fecd8eeb78e5e48e7be5cd3df4 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,209   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.6-py3-none-any.whl#sha256=dd5a03ce2b22ffe66b776fb405e95f4f7a70fed4ba1a7087db1de973f4e22fef (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,210   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.3-py3-none-any.whl#sha256=02c694c6199f0c5db1056131515f4272e703ea6beceffb16678ad3eb24358d8d (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,210   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.2-py3-none-any.whl#sha256=4b75117a7c332187dfb858bffe54fbadf2a9f39960fcc21d2bce0db59b6e114d (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,211   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.1-py3-none-any.whl#sha256=c971843754fb3c11f48ead52c04bc7bd86ddeab289fd362e9e24a9c0fd1f2879 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,211   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.0-py3-none-any.whl#sha256=3133231730578803c78146b89d575c44b9ac4419b598cbb7a3178c13e5175428 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,212   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.8b1-py3-none-any.whl#sha256=f8404616952a9ef6a46543f35e0263365db7dde0f1010383871c30b5db9fc8db (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,212   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.7-py3-none-any.whl#sha256=ff0ee32028021f53551b42ec4d3ddd9e5f3f046795606fc0612f232672e7bbf4 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,213   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.6-py3-none-any.whl#sha256=ed899d29852d0a5921b1d5319f20e5f5b827f30d0a14fd5afa37e9a4eb02f745 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,213   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.5-py3-none-any.whl#sha256=ae582d50ba58fd74c73ec1a0a37f427d3343e9f20fe45389ee098ed5ef99e3f4 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,214   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b3-py3-none-any.whl#sha256=2d5b93346985d7186695de6a4dc010b9abf4e108ec438f449b74705eb7191fc1 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,214   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b2-py3-none-any.whl#sha256=177fdc2bb5e28ee60a931441956acff6b853871395a611bc1404c7f78a2a3f85 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,215   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b1-py3-none-any.whl#sha256=cffebc36f92b7947522a0e8d0fe11d9a7051a036352eb036ca90db5a14e591e1 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,215   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b0-py3-none-any.whl#sha256=1a96ec79753b589c69bb9c881bdedfc0aef683779cb926da47f22e85e77bb203 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,216   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.3-py3-none-any.whl#sha256=6670c151da83c393482600e07c463c74de77ab5776f88a4978d1b7defa71f852 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,216   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.2-py3-none-any.whl#sha256=dac945e10b775b7c8ab5f5b16635bd016d17aacb8a4ad77708ce67dc1b3f3ed6 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,217   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.1-py3-none-any.whl#sha256=05d5353a17e20d9bc2a38528bb3b2e2e28d3188d4ebf69192793cd3e0d5199e6 (from https://www.piwheels.org/simple/gtdbtk/)
2023-02-15T04:36:02,217 Skipping link: not a file: https://www.piwheels.org/simple/gtdbtk/
2023-02-15T04:36:02,218 Skipping link: not a file: https://pypi.org/simple/gtdbtk/
2023-02-15T04:36:02,266 Given no hashes to check 1 links for project 'gtdbtk': discarding no candidates
2023-02-15T04:36:02,299 Collecting gtdbtk==2.2.3
2023-02-15T04:36:02,303   Created temporary directory: /tmp/pip-unpack-a68k7s9z
2023-02-15T04:36:02,551   Downloading gtdbtk-2.2.3.tar.gz (1.7 MB)
2023-02-15T04:36:04,397   Added gtdbtk==2.2.3 from https://files.pythonhosted.org/packages/51/6d/8a161d447e0d3db86dffe2c684272be3969254b056ef819a270a10e5bdbd/gtdbtk-2.2.3.tar.gz to build tracker '/tmp/pip-build-tracker-whhzvfp6'
2023-02-15T04:36:04,399   Running setup.py (path:/tmp/pip-wheel-134zgrsu/gtdbtk_2ee9307f0d3b4abd948918f19370f6a0/setup.py) egg_info for package gtdbtk
2023-02-15T04:36:04,401   Created temporary directory: /tmp/pip-pip-egg-info-jd165fzo
2023-02-15T04:36:04,401   Preparing metadata (setup.py): started
2023-02-15T04:36:04,403   Running command python setup.py egg_info
2023-02-15T04:36:06,929   running egg_info
2023-02-15T04:36:06,933   creating /tmp/pip-pip-egg-info-jd165fzo/gtdbtk.egg-info
2023-02-15T04:36:06,997   writing /tmp/pip-pip-egg-info-jd165fzo/gtdbtk.egg-info/PKG-INFO
2023-02-15T04:36:07,002   writing dependency_links to /tmp/pip-pip-egg-info-jd165fzo/gtdbtk.egg-info/dependency_links.txt
2023-02-15T04:36:07,006   writing entry points to /tmp/pip-pip-egg-info-jd165fzo/gtdbtk.egg-info/entry_points.txt
2023-02-15T04:36:07,008   writing requirements to /tmp/pip-pip-egg-info-jd165fzo/gtdbtk.egg-info/requires.txt
2023-02-15T04:36:07,010   writing top-level names to /tmp/pip-pip-egg-info-jd165fzo/gtdbtk.egg-info/top_level.txt
2023-02-15T04:36:07,013   writing manifest file '/tmp/pip-pip-egg-info-jd165fzo/gtdbtk.egg-info/SOURCES.txt'
2023-02-15T04:36:07,250   reading manifest file '/tmp/pip-pip-egg-info-jd165fzo/gtdbtk.egg-info/SOURCES.txt'
2023-02-15T04:36:07,253   adding license file 'LICENSE'
2023-02-15T04:36:07,265   writing manifest file '/tmp/pip-pip-egg-info-jd165fzo/gtdbtk.egg-info/SOURCES.txt'
2023-02-15T04:36:07,471   Preparing metadata (setup.py): finished with status 'done'
2023-02-15T04:36:07,485   Source in /tmp/pip-wheel-134zgrsu/gtdbtk_2ee9307f0d3b4abd948918f19370f6a0 has version 2.2.3, which satisfies requirement gtdbtk==2.2.3 from https://files.pythonhosted.org/packages/51/6d/8a161d447e0d3db86dffe2c684272be3969254b056ef819a270a10e5bdbd/gtdbtk-2.2.3.tar.gz
2023-02-15T04:36:07,487   Removed gtdbtk==2.2.3 from https://files.pythonhosted.org/packages/51/6d/8a161d447e0d3db86dffe2c684272be3969254b056ef819a270a10e5bdbd/gtdbtk-2.2.3.tar.gz from build tracker '/tmp/pip-build-tracker-whhzvfp6'
2023-02-15T04:36:07,503 Created temporary directory: /tmp/pip-unpack-55ncegbh
2023-02-15T04:36:07,504 Building wheels for collected packages: gtdbtk
2023-02-15T04:36:07,513   Created temporary directory: /tmp/pip-wheel-i7yq22zi
2023-02-15T04:36:07,514   Building wheel for gtdbtk (setup.py): started
2023-02-15T04:36:07,516   Destination directory: /tmp/pip-wheel-i7yq22zi
2023-02-15T04:36:07,516   Running command python setup.py bdist_wheel
2023-02-15T04:36:10,033   running bdist_wheel
2023-02-15T04:36:10,774   running build
2023-02-15T04:36:10,775   running build_py
2023-02-15T04:36:10,847   creating build
2023-02-15T04:36:10,848   creating build/lib
2023-02-15T04:36:10,849   creating build/lib/gtdbtk
2023-02-15T04:36:10,852   copying gtdbtk/tools.py -> build/lib/gtdbtk
2023-02-15T04:36:10,857   copying gtdbtk/split.py -> build/lib/gtdbtk
2023-02-15T04:36:10,862   copying gtdbtk/reroot_tree.py -> build/lib/gtdbtk
2023-02-15T04:36:10,867   copying gtdbtk/__init__.py -> build/lib/gtdbtk
2023-02-15T04:36:10,871   copying gtdbtk/__main__.py -> build/lib/gtdbtk
2023-02-15T04:36:10,875   copying gtdbtk/ani_screen.py -> build/lib/gtdbtk
2023-02-15T04:36:10,880   copying gtdbtk/decorate.py -> build/lib/gtdbtk
2023-02-15T04:36:10,885   copying gtdbtk/infer_ranks.py -> build/lib/gtdbtk
2023-02-15T04:36:10,890   copying gtdbtk/exceptions.py -> build/lib/gtdbtk
2023-02-15T04:36:10,896   copying gtdbtk/classify.py -> build/lib/gtdbtk
2023-02-15T04:36:10,907   copying gtdbtk/relative_distance.py -> build/lib/gtdbtk
2023-02-15T04:36:10,913   copying gtdbtk/cli.py -> build/lib/gtdbtk
2023-02-15T04:36:10,919   copying gtdbtk/main.py -> build/lib/gtdbtk
2023-02-15T04:36:10,927   copying gtdbtk/markers.py -> build/lib/gtdbtk
2023-02-15T04:36:10,934   copying gtdbtk/ani_rep.py -> build/lib/gtdbtk
2023-02-15T04:36:10,939   copying gtdbtk/misc.py -> build/lib/gtdbtk
2023-02-15T04:36:10,944   copying gtdbtk/trim_msa.py -> build/lib/gtdbtk
2023-02-15T04:36:10,951   creating build/lib/tests
2023-02-15T04:36:10,953   copying tests/__init__.py -> build/lib/tests
2023-02-15T04:36:10,956   copying tests/test_classify.py -> build/lib/tests
2023-02-15T04:36:10,961   copying tests/test_cli.py -> build/lib/tests
2023-02-15T04:36:10,966   copying tests/common.py -> build/lib/tests
2023-02-15T04:36:10,971   creating build/lib/gtdbtk/model
2023-02-15T04:36:10,973   copying gtdbtk/model/__init__.py -> build/lib/gtdbtk/model
2023-02-15T04:36:10,976   copying gtdbtk/model/enum.py -> build/lib/gtdbtk/model
2023-02-15T04:36:10,981   creating build/lib/gtdbtk/config
2023-02-15T04:36:10,983   copying gtdbtk/config/__init__.py -> build/lib/gtdbtk/config
2023-02-15T04:36:10,987   copying gtdbtk/config/config.py -> build/lib/gtdbtk/config
2023-02-15T04:36:10,993   copying gtdbtk/config/output.py -> build/lib/gtdbtk/config
2023-02-15T04:36:10,998   creating build/lib/gtdbtk/pipeline
2023-02-15T04:36:11,000   copying gtdbtk/pipeline/__init__.py -> build/lib/gtdbtk/pipeline
2023-02-15T04:36:11,004   copying gtdbtk/pipeline/align.py -> build/lib/gtdbtk/pipeline
2023-02-15T04:36:11,009   copying gtdbtk/pipeline/export_msa.py -> build/lib/gtdbtk/pipeline
2023-02-15T04:36:11,015   creating build/lib/gtdbtk/files
2023-02-15T04:36:11,017   copying gtdbtk/files/marker_info.py -> build/lib/gtdbtk/files
2023-02-15T04:36:11,022   copying gtdbtk/files/tree_mapping.py -> build/lib/gtdbtk/files
2023-02-15T04:36:11,026   copying gtdbtk/files/stage_logger.py -> build/lib/gtdbtk/files
2023-02-15T04:36:11,031   copying gtdbtk/files/__init__.py -> build/lib/gtdbtk/files
2023-02-15T04:36:11,034   copying gtdbtk/files/classify_summary.py -> build/lib/gtdbtk/files
2023-02-15T04:36:11,039   copying gtdbtk/files/red_dict.py -> build/lib/gtdbtk/files
2023-02-15T04:36:11,043   copying gtdbtk/files/batchfile.py -> build/lib/gtdbtk/files
2023-02-15T04:36:11,047   copying gtdbtk/files/missing_genomes.py -> build/lib/gtdbtk/files
2023-02-15T04:36:11,051   copying gtdbtk/files/gtdb_radii.py -> build/lib/gtdbtk/files
2023-02-15T04:36:11,055   copying gtdbtk/files/pplacer_classification.py -> build/lib/gtdbtk/files
2023-02-15T04:36:11,062   creating build/lib/gtdbtk/biolib_lite
2023-02-15T04:36:11,064   copying gtdbtk/biolib_lite/newick.py -> build/lib/gtdbtk/biolib_lite
2023-02-15T04:36:11,070   copying gtdbtk/biolib_lite/parallel.py -> build/lib/gtdbtk/biolib_lite
2023-02-15T04:36:11,074   copying gtdbtk/biolib_lite/__init__.py -> build/lib/gtdbtk/biolib_lite
2023-02-15T04:36:11,077   copying gtdbtk/biolib_lite/execute.py -> build/lib/gtdbtk/biolib_lite
2023-02-15T04:36:11,081   copying gtdbtk/biolib_lite/exceptions.py -> build/lib/gtdbtk/biolib_lite
2023-02-15T04:36:11,084   copying gtdbtk/biolib_lite/prodigal_biolib.py -> build/lib/gtdbtk/biolib_lite
2023-02-15T04:36:11,089   copying gtdbtk/biolib_lite/taxonomy.py -> build/lib/gtdbtk/biolib_lite
2023-02-15T04:36:11,095   copying gtdbtk/biolib_lite/custom_help_formatter.py -> build/lib/gtdbtk/biolib_lite
2023-02-15T04:36:11,099   copying gtdbtk/biolib_lite/seq_io.py -> build/lib/gtdbtk/biolib_lite
2023-02-15T04:36:11,103   copying gtdbtk/biolib_lite/logger.py -> build/lib/gtdbtk/biolib_lite
2023-02-15T04:36:11,109   copying gtdbtk/biolib_lite/common.py -> build/lib/gtdbtk/biolib_lite
2023-02-15T04:36:11,115   creating build/lib/gtdbtk/external
2023-02-15T04:36:11,117   copying gtdbtk/external/fasttree.py -> build/lib/gtdbtk/external
2023-02-15T04:36:11,121   copying gtdbtk/external/__init__.py -> build/lib/gtdbtk/external
2023-02-15T04:36:11,124   copying gtdbtk/external/mash.py -> build/lib/gtdbtk/external
2023-02-15T04:36:11,128   copying gtdbtk/external/hmm_aligner.py -> build/lib/gtdbtk/external
2023-02-15T04:36:11,133   copying gtdbtk/external/fastani.py -> build/lib/gtdbtk/external
2023-02-15T04:36:11,138   copying gtdbtk/external/pplacer.py -> build/lib/gtdbtk/external
2023-02-15T04:36:11,142   copying gtdbtk/external/tigrfam_search.py -> build/lib/gtdbtk/external
2023-02-15T04:36:11,147   copying gtdbtk/external/pfam_search.py -> build/lib/gtdbtk/external
2023-02-15T04:36:11,152   copying gtdbtk/external/prodigal.py -> build/lib/gtdbtk/external
2023-02-15T04:36:11,157   creating build/lib/gtdbtk/files/prodigal
2023-02-15T04:36:11,159   copying gtdbtk/files/prodigal/tln_table.py -> build/lib/gtdbtk/files/prodigal
2023-02-15T04:36:11,163   copying gtdbtk/files/prodigal/__init__.py -> build/lib/gtdbtk/files/prodigal
2023-02-15T04:36:11,166   copying gtdbtk/files/prodigal/tln_table_summary.py -> build/lib/gtdbtk/files/prodigal
2023-02-15T04:36:11,170   creating build/lib/gtdbtk/files/marker
2023-02-15T04:36:11,171   copying gtdbtk/files/marker/__init__.py -> build/lib/gtdbtk/files/marker
2023-02-15T04:36:11,174   copying gtdbtk/files/marker/copy_number.py -> build/lib/gtdbtk/files/marker
2023-02-15T04:36:11,179   copying gtdbtk/files/marker/tophit.py -> build/lib/gtdbtk/files/marker
2023-02-15T04:36:11,184   creating build/lib/gtdbtk/external/pypfam
2023-02-15T04:36:11,185   copying gtdbtk/external/pypfam/__init__.py -> build/lib/gtdbtk/external/pypfam
2023-02-15T04:36:11,190   creating build/lib/gtdbtk/external/pypfam/HMM
2023-02-15T04:36:11,192   copying gtdbtk/external/pypfam/HMM/HMMResultsIO.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-02-15T04:36:11,197   copying gtdbtk/external/pypfam/HMM/__init__.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-02-15T04:36:11,200   copying gtdbtk/external/pypfam/HMM/HMMMatch.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-02-15T04:36:11,203   copying gtdbtk/external/pypfam/HMM/HMMResults.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-02-15T04:36:11,207   copying gtdbtk/external/pypfam/HMM/HMMUnit.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-02-15T04:36:11,211   copying gtdbtk/external/pypfam/HMM/HMMSequence.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-02-15T04:36:11,215   creating build/lib/gtdbtk/external/pypfam/Scan
2023-02-15T04:36:11,216   copying gtdbtk/external/pypfam/Scan/__init__.py -> build/lib/gtdbtk/external/pypfam/Scan
2023-02-15T04:36:11,220   copying gtdbtk/external/pypfam/Scan/PfamScan.py -> build/lib/gtdbtk/external/pypfam/Scan
2023-02-15T04:36:11,226   creating build/lib/tests/test_gtdbtk
2023-02-15T04:36:11,228   copying tests/test_gtdbtk/test_trim_msa.py -> build/lib/tests/test_gtdbtk
2023-02-15T04:36:11,231   copying tests/test_gtdbtk/__init__.py -> build/lib/tests/test_gtdbtk
2023-02-15T04:36:11,234   copying tests/test_gtdbtk/test_main.py -> build/lib/tests/test_gtdbtk
2023-02-15T04:36:11,238   copying tests/test_gtdbtk/test_tools.py -> build/lib/tests/test_gtdbtk
2023-02-15T04:36:11,242   copying tests/test_gtdbtk/test__main__.py -> build/lib/tests/test_gtdbtk
2023-02-15T04:36:11,247   copying tests/test_gtdbtk/test_markers.py -> build/lib/tests/test_gtdbtk
2023-02-15T04:36:11,251   creating build/lib/tests/test_gtdbtk/test_files
2023-02-15T04:36:11,252   copying tests/test_gtdbtk/test_files/__init__.py -> build/lib/tests/test_gtdbtk/test_files
2023-02-15T04:36:11,256   creating build/lib/tests/test_gtdbtk/test_external
2023-02-15T04:36:11,258   copying tests/test_gtdbtk/test_external/__init__.py -> build/lib/tests/test_gtdbtk/test_external
2023-02-15T04:36:11,261   copying tests/test_gtdbtk/test_external/test_fasttree.py -> build/lib/tests/test_gtdbtk/test_external
2023-02-15T04:36:11,264   copying tests/test_gtdbtk/test_external/test_fastani.py -> build/lib/tests/test_gtdbtk/test_external
2023-02-15T04:36:11,270   creating build/lib/tests/test_gtdbtk/test_biolib_lite
2023-02-15T04:36:11,271   copying tests/test_gtdbtk/test_biolib_lite/test_common.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2023-02-15T04:36:11,274   copying tests/test_gtdbtk/test_biolib_lite/__init__.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2023-02-15T04:36:11,277   copying tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2023-02-15T04:36:11,280   copying tests/test_gtdbtk/test_biolib_lite/test_newick.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2023-02-15T04:36:11,284   copying tests/test_gtdbtk/test_biolib_lite/test_seq_io.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2023-02-15T04:36:11,288   creating build/lib/tests/test_gtdbtk/test_files/test_marker
2023-02-15T04:36:11,290   copying tests/test_gtdbtk/test_files/test_marker/__init__.py -> build/lib/tests/test_gtdbtk/test_files/test_marker
2023-02-15T04:36:11,293   copying tests/test_gtdbtk/test_files/test_marker/test_tophit.py -> build/lib/tests/test_gtdbtk/test_files/test_marker
2023-02-15T04:36:11,297   copying tests/test_gtdbtk/test_files/test_marker/test_copy_number.py -> build/lib/tests/test_gtdbtk/test_files/test_marker
2023-02-15T04:36:11,302   creating build/lib/tests/test_gtdbtk/test_files/test_prodigal
2023-02-15T04:36:11,303   copying tests/test_gtdbtk/test_files/test_prodigal/__init__.py -> build/lib/tests/test_gtdbtk/test_files/test_prodigal
2023-02-15T04:36:11,306   copying tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py -> build/lib/tests/test_gtdbtk/test_files/test_prodigal
2023-02-15T04:36:11,314   creating build/lib/gtdbtk/tests
2023-02-15T04:36:11,315   creating build/lib/gtdbtk/tests/data
2023-02-15T04:36:11,316   creating build/lib/gtdbtk/tests/data/genomes
2023-02-15T04:36:11,317   copying gtdbtk/tests/data/genomes/genome_1.fna -> build/lib/gtdbtk/tests/data/genomes
2023-02-15T04:36:11,451   copying gtdbtk/tests/data/genomes/genome_2.fna -> build/lib/gtdbtk/tests/data/genomes
2023-02-15T04:36:11,518   copying gtdbtk/tests/data/genomes/genome_3.fna -> build/lib/gtdbtk/tests/data/genomes
2023-02-15T04:36:11,677   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2023-02-15T04:36:11,678     setuptools.SetuptoolsDeprecationWarning,
2023-02-15T04:36:11,744   installing to build/bdist.linux-armv7l/wheel
2023-02-15T04:36:11,744   running install
2023-02-15T04:36:11,808   running install_lib
2023-02-15T04:36:11,878   creating build/bdist.linux-armv7l
2023-02-15T04:36:11,878   creating build/bdist.linux-armv7l/wheel
2023-02-15T04:36:11,882   creating build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:11,884   copying build/lib/gtdbtk/tools.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:11,890   copying build/lib/gtdbtk/split.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:11,895   creating build/bdist.linux-armv7l/wheel/gtdbtk/model
2023-02-15T04:36:11,897   copying build/lib/gtdbtk/model/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/model
2023-02-15T04:36:11,901   copying build/lib/gtdbtk/model/enum.py -> build/bdist.linux-armv7l/wheel/gtdbtk/model
2023-02-15T04:36:11,905   creating build/bdist.linux-armv7l/wheel/gtdbtk/config
2023-02-15T04:36:11,907   copying build/lib/gtdbtk/config/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
2023-02-15T04:36:11,910   copying build/lib/gtdbtk/config/config.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
2023-02-15T04:36:11,915   copying build/lib/gtdbtk/config/output.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
2023-02-15T04:36:11,919   copying build/lib/gtdbtk/reroot_tree.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:11,923   copying build/lib/gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:11,926   copying build/lib/gtdbtk/__main__.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:11,931   creating build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2023-02-15T04:36:11,933   copying build/lib/gtdbtk/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2023-02-15T04:36:11,936   copying build/lib/gtdbtk/pipeline/align.py -> build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2023-02-15T04:36:11,940   copying build/lib/gtdbtk/pipeline/export_msa.py -> build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2023-02-15T04:36:11,943   copying build/lib/gtdbtk/ani_screen.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:11,947   copying build/lib/gtdbtk/decorate.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:11,953   copying build/lib/gtdbtk/infer_ranks.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:11,958   creating build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-02-15T04:36:11,960   copying build/lib/gtdbtk/files/marker_info.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-02-15T04:36:11,963   copying build/lib/gtdbtk/files/tree_mapping.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-02-15T04:36:11,967   copying build/lib/gtdbtk/files/stage_logger.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-02-15T04:36:11,971   copying build/lib/gtdbtk/files/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-02-15T04:36:11,973   copying build/lib/gtdbtk/files/classify_summary.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-02-15T04:36:11,978   copying build/lib/gtdbtk/files/red_dict.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-02-15T04:36:11,982   copying build/lib/gtdbtk/files/batchfile.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-02-15T04:36:11,985   copying build/lib/gtdbtk/files/missing_genomes.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-02-15T04:36:11,988   copying build/lib/gtdbtk/files/gtdb_radii.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-02-15T04:36:11,991   copying build/lib/gtdbtk/files/pplacer_classification.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-02-15T04:36:11,996   creating build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2023-02-15T04:36:11,997   copying build/lib/gtdbtk/files/prodigal/tln_table.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2023-02-15T04:36:12,001   copying build/lib/gtdbtk/files/prodigal/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2023-02-15T04:36:12,004   copying build/lib/gtdbtk/files/prodigal/tln_table_summary.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2023-02-15T04:36:12,008   creating build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2023-02-15T04:36:12,010   copying build/lib/gtdbtk/files/marker/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2023-02-15T04:36:12,012   copying build/lib/gtdbtk/files/marker/copy_number.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2023-02-15T04:36:12,016   copying build/lib/gtdbtk/files/marker/tophit.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2023-02-15T04:36:12,020   copying build/lib/gtdbtk/exceptions.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:12,025   creating build/bdist.linux-armv7l/wheel/gtdbtk/tests
2023-02-15T04:36:12,028   creating build/bdist.linux-armv7l/wheel/gtdbtk/tests/data
2023-02-15T04:36:12,030   creating build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2023-02-15T04:36:12,032   copying build/lib/gtdbtk/tests/data/genomes/genome_1.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2023-02-15T04:36:12,183   copying build/lib/gtdbtk/tests/data/genomes/genome_2.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2023-02-15T04:36:12,253   copying build/lib/gtdbtk/tests/data/genomes/genome_3.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2023-02-15T04:36:12,331   copying build/lib/gtdbtk/classify.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:12,342   creating build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-02-15T04:36:12,343   copying build/lib/gtdbtk/biolib_lite/newick.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-02-15T04:36:12,346   copying build/lib/gtdbtk/biolib_lite/parallel.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-02-15T04:36:12,351   copying build/lib/gtdbtk/biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-02-15T04:36:12,353   copying build/lib/gtdbtk/biolib_lite/execute.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-02-15T04:36:12,357   copying build/lib/gtdbtk/biolib_lite/exceptions.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-02-15T04:36:12,361   copying build/lib/gtdbtk/biolib_lite/prodigal_biolib.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-02-15T04:36:12,365   copying build/lib/gtdbtk/biolib_lite/taxonomy.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-02-15T04:36:12,371   copying build/lib/gtdbtk/biolib_lite/custom_help_formatter.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-02-15T04:36:12,374   copying build/lib/gtdbtk/biolib_lite/seq_io.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-02-15T04:36:12,378   copying build/lib/gtdbtk/biolib_lite/logger.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-02-15T04:36:12,382   copying build/lib/gtdbtk/biolib_lite/common.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-02-15T04:36:12,386   copying build/lib/gtdbtk/relative_distance.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:12,391   copying build/lib/gtdbtk/cli.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:12,398   copying build/lib/gtdbtk/main.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:12,405   copying build/lib/gtdbtk/markers.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:12,412   copying build/lib/gtdbtk/ani_rep.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:12,416   copying build/lib/gtdbtk/misc.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:12,420   copying build/lib/gtdbtk/trim_msa.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-02-15T04:36:12,425   creating build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-02-15T04:36:12,426   copying build/lib/gtdbtk/external/fasttree.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-02-15T04:36:12,431   copying build/lib/gtdbtk/external/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-02-15T04:36:12,433   copying build/lib/gtdbtk/external/mash.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-02-15T04:36:12,437   copying build/lib/gtdbtk/external/hmm_aligner.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-02-15T04:36:12,442   copying build/lib/gtdbtk/external/fastani.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-02-15T04:36:12,447   creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam
2023-02-15T04:36:12,448   copying build/lib/gtdbtk/external/pypfam/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam
2023-02-15T04:36:12,452   creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-02-15T04:36:12,454   copying build/lib/gtdbtk/external/pypfam/HMM/HMMResultsIO.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-02-15T04:36:12,459   copying build/lib/gtdbtk/external/pypfam/HMM/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-02-15T04:36:12,462   copying build/lib/gtdbtk/external/pypfam/HMM/HMMMatch.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-02-15T04:36:12,465   copying build/lib/gtdbtk/external/pypfam/HMM/HMMResults.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-02-15T04:36:12,469   copying build/lib/gtdbtk/external/pypfam/HMM/HMMUnit.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-02-15T04:36:12,472   copying build/lib/gtdbtk/external/pypfam/HMM/HMMSequence.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-02-15T04:36:12,477   creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan
2023-02-15T04:36:12,478   copying build/lib/gtdbtk/external/pypfam/Scan/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan
2023-02-15T04:36:12,481   copying build/lib/gtdbtk/external/pypfam/Scan/PfamScan.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan
2023-02-15T04:36:12,486   copying build/lib/gtdbtk/external/pplacer.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-02-15T04:36:12,490   copying build/lib/gtdbtk/external/tigrfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-02-15T04:36:12,494   copying build/lib/gtdbtk/external/pfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-02-15T04:36:12,498   copying build/lib/gtdbtk/external/prodigal.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-02-15T04:36:12,504   creating build/bdist.linux-armv7l/wheel/tests
2023-02-15T04:36:12,506   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-02-15T04:36:12,508   copying build/lib/tests/test_gtdbtk/test_trim_msa.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-02-15T04:36:12,513   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files
2023-02-15T04:36:12,514   copying build/lib/tests/test_gtdbtk/test_files/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files
2023-02-15T04:36:12,518   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2023-02-15T04:36:12,520   copying build/lib/tests/test_gtdbtk/test_files/test_marker/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2023-02-15T04:36:12,523   copying build/lib/tests/test_gtdbtk/test_files/test_marker/test_tophit.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2023-02-15T04:36:12,527   copying build/lib/tests/test_gtdbtk/test_files/test_marker/test_copy_number.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2023-02-15T04:36:12,532   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_prodigal
2023-02-15T04:36:12,534   copying build/lib/tests/test_gtdbtk/test_files/test_prodigal/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_prodigal
2023-02-15T04:36:12,537   copying build/lib/tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_prodigal
2023-02-15T04:36:12,540   copying build/lib/tests/test_gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-02-15T04:36:12,544   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2023-02-15T04:36:12,545   copying build/lib/tests/test_gtdbtk/test_external/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2023-02-15T04:36:12,548   copying build/lib/tests/test_gtdbtk/test_external/test_fasttree.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2023-02-15T04:36:12,552   copying build/lib/tests/test_gtdbtk/test_external/test_fastani.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2023-02-15T04:36:12,556   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-02-15T04:36:12,558   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_common.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-02-15T04:36:12,561   copying build/lib/tests/test_gtdbtk/test_biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-02-15T04:36:12,564   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-02-15T04:36:12,567   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_newick.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-02-15T04:36:12,571   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_seq_io.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-02-15T04:36:12,574   copying build/lib/tests/test_gtdbtk/test_main.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-02-15T04:36:12,579   copying build/lib/tests/test_gtdbtk/test_tools.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-02-15T04:36:12,583   copying build/lib/tests/test_gtdbtk/test__main__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-02-15T04:36:12,587   copying build/lib/tests/test_gtdbtk/test_markers.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-02-15T04:36:12,590   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2023-02-15T04:36:12,593   copying build/lib/tests/test_classify.py -> build/bdist.linux-armv7l/wheel/tests
2023-02-15T04:36:12,597   copying build/lib/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/tests
2023-02-15T04:36:12,602   copying build/lib/tests/common.py -> build/bdist.linux-armv7l/wheel/tests
2023-02-15T04:36:12,604   running install_data
2023-02-15T04:36:12,669   creating build/bdist.linux-armv7l/wheel/gtdbtk-2.2.3.data
2023-02-15T04:36:12,670   creating build/bdist.linux-armv7l/wheel/gtdbtk-2.2.3.data/data
2023-02-15T04:36:12,672   copying LICENSE -> build/bdist.linux-armv7l/wheel/gtdbtk-2.2.3.data/data/
2023-02-15T04:36:12,677   running install_egg_info
2023-02-15T04:36:12,836   running egg_info
2023-02-15T04:36:12,901   writing gtdbtk.egg-info/PKG-INFO
2023-02-15T04:36:12,905   writing dependency_links to gtdbtk.egg-info/dependency_links.txt
2023-02-15T04:36:12,909   writing entry points to gtdbtk.egg-info/entry_points.txt
2023-02-15T04:36:12,911   writing requirements to gtdbtk.egg-info/requires.txt
2023-02-15T04:36:12,913   writing top-level names to gtdbtk.egg-info/top_level.txt
2023-02-15T04:36:13,012   reading manifest file 'gtdbtk.egg-info/SOURCES.txt'
2023-02-15T04:36:13,022   adding license file 'LICENSE'
2023-02-15T04:36:13,038   writing manifest file 'gtdbtk.egg-info/SOURCES.txt'
2023-02-15T04:36:13,041   Copying gtdbtk.egg-info to build/bdist.linux-armv7l/wheel/gtdbtk-2.2.3-py3.7.egg-info
2023-02-15T04:36:13,063   running install_scripts
2023-02-15T04:36:13,286   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2023-02-15T04:36:13,297   creating build/bdist.linux-armv7l/wheel/gtdbtk-2.2.3.dist-info/WHEEL
2023-02-15T04:36:13,301   creating '/tmp/pip-wheel-i7yq22zi/gtdbtk-2.2.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-02-15T04:36:13,306   adding 'gtdbtk/__init__.py'
2023-02-15T04:36:13,310   adding 'gtdbtk/__main__.py'
2023-02-15T04:36:13,314   adding 'gtdbtk/ani_rep.py'
2023-02-15T04:36:13,317   adding 'gtdbtk/ani_screen.py'
2023-02-15T04:36:13,343   adding 'gtdbtk/classify.py'
2023-02-15T04:36:13,350   adding 'gtdbtk/cli.py'
2023-02-15T04:36:13,356   adding 'gtdbtk/decorate.py'
2023-02-15T04:36:13,359   adding 'gtdbtk/exceptions.py'
2023-02-15T04:36:13,362   adding 'gtdbtk/infer_ranks.py'
2023-02-15T04:36:13,373   adding 'gtdbtk/main.py'
2023-02-15T04:36:13,383   adding 'gtdbtk/markers.py'
2023-02-15T04:36:13,388   adding 'gtdbtk/misc.py'
2023-02-15T04:36:13,393   adding 'gtdbtk/relative_distance.py'
2023-02-15T04:36:13,396   adding 'gtdbtk/reroot_tree.py'
2023-02-15T04:36:13,402   adding 'gtdbtk/split.py'
2023-02-15T04:36:13,407   adding 'gtdbtk/tools.py'
2023-02-15T04:36:13,412   adding 'gtdbtk/trim_msa.py'
2023-02-15T04:36:13,415   adding 'gtdbtk/biolib_lite/__init__.py'
2023-02-15T04:36:13,418   adding 'gtdbtk/biolib_lite/common.py'
2023-02-15T04:36:13,421   adding 'gtdbtk/biolib_lite/custom_help_formatter.py'
2023-02-15T04:36:13,424   adding 'gtdbtk/biolib_lite/exceptions.py'
2023-02-15T04:36:13,427   adding 'gtdbtk/biolib_lite/execute.py'
2023-02-15T04:36:13,430   adding 'gtdbtk/biolib_lite/logger.py'
2023-02-15T04:36:13,433   adding 'gtdbtk/biolib_lite/newick.py'
2023-02-15T04:36:13,437   adding 'gtdbtk/biolib_lite/parallel.py'
2023-02-15T04:36:13,442   adding 'gtdbtk/biolib_lite/prodigal_biolib.py'
2023-02-15T04:36:13,445   adding 'gtdbtk/biolib_lite/seq_io.py'
2023-02-15T04:36:13,453   adding 'gtdbtk/biolib_lite/taxonomy.py'
2023-02-15T04:36:13,457   adding 'gtdbtk/config/__init__.py'
2023-02-15T04:36:13,461   adding 'gtdbtk/config/config.py'
2023-02-15T04:36:13,464   adding 'gtdbtk/config/output.py'
2023-02-15T04:36:13,468   adding 'gtdbtk/external/__init__.py'
2023-02-15T04:36:13,472   adding 'gtdbtk/external/fastani.py'
2023-02-15T04:36:13,475   adding 'gtdbtk/external/fasttree.py'
2023-02-15T04:36:13,480   adding 'gtdbtk/external/hmm_aligner.py'
2023-02-15T04:36:13,484   adding 'gtdbtk/external/mash.py'
2023-02-15T04:36:13,487   adding 'gtdbtk/external/pfam_search.py'
2023-02-15T04:36:13,491   adding 'gtdbtk/external/pplacer.py'
2023-02-15T04:36:13,495   adding 'gtdbtk/external/prodigal.py'
2023-02-15T04:36:13,499   adding 'gtdbtk/external/tigrfam_search.py'
2023-02-15T04:36:13,502   adding 'gtdbtk/external/pypfam/__init__.py'
2023-02-15T04:36:13,506   adding 'gtdbtk/external/pypfam/HMM/HMMMatch.py'
2023-02-15T04:36:13,509   adding 'gtdbtk/external/pypfam/HMM/HMMResults.py'
2023-02-15T04:36:13,515   adding 'gtdbtk/external/pypfam/HMM/HMMResultsIO.py'
2023-02-15T04:36:13,518   adding 'gtdbtk/external/pypfam/HMM/HMMSequence.py'
2023-02-15T04:36:13,521   adding 'gtdbtk/external/pypfam/HMM/HMMUnit.py'
2023-02-15T04:36:13,523   adding 'gtdbtk/external/pypfam/HMM/__init__.py'
2023-02-15T04:36:13,529   adding 'gtdbtk/external/pypfam/Scan/PfamScan.py'
2023-02-15T04:36:13,532   adding 'gtdbtk/external/pypfam/Scan/__init__.py'
2023-02-15T04:36:13,535   adding 'gtdbtk/files/__init__.py'
2023-02-15T04:36:13,538   adding 'gtdbtk/files/batchfile.py'
2023-02-15T04:36:13,541   adding 'gtdbtk/files/classify_summary.py'
2023-02-15T04:36:13,544   adding 'gtdbtk/files/gtdb_radii.py'
2023-02-15T04:36:13,546   adding 'gtdbtk/files/marker_info.py'
2023-02-15T04:36:13,549   adding 'gtdbtk/files/missing_genomes.py'
2023-02-15T04:36:13,552   adding 'gtdbtk/files/pplacer_classification.py'
2023-02-15T04:36:13,555   adding 'gtdbtk/files/red_dict.py'
2023-02-15T04:36:13,558   adding 'gtdbtk/files/stage_logger.py'
2023-02-15T04:36:13,561   adding 'gtdbtk/files/tree_mapping.py'
2023-02-15T04:36:13,564   adding 'gtdbtk/files/marker/__init__.py'
2023-02-15T04:36:13,568   adding 'gtdbtk/files/marker/copy_number.py'
2023-02-15T04:36:13,571   adding 'gtdbtk/files/marker/tophit.py'
2023-02-15T04:36:13,575   adding 'gtdbtk/files/prodigal/__init__.py'
2023-02-15T04:36:13,577   adding 'gtdbtk/files/prodigal/tln_table.py'
2023-02-15T04:36:13,580   adding 'gtdbtk/files/prodigal/tln_table_summary.py'
2023-02-15T04:36:13,583   adding 'gtdbtk/model/__init__.py'
2023-02-15T04:36:13,585   adding 'gtdbtk/model/enum.py'
2023-02-15T04:36:13,588   adding 'gtdbtk/pipeline/__init__.py'
2023-02-15T04:36:13,591   adding 'gtdbtk/pipeline/align.py'
2023-02-15T04:36:13,594   adding 'gtdbtk/pipeline/export_msa.py'
2023-02-15T04:36:17,528   adding 'gtdbtk/tests/data/genomes/genome_1.fna'
2023-02-15T04:36:19,317   adding 'gtdbtk/tests/data/genomes/genome_2.fna'
2023-02-15T04:36:20,947   adding 'gtdbtk/tests/data/genomes/genome_3.fna'
2023-02-15T04:36:20,987   adding 'gtdbtk-2.2.3.data/data/LICENSE'
2023-02-15T04:36:20,994   adding 'tests/__init__.py'
2023-02-15T04:36:20,996   adding 'tests/common.py'
2023-02-15T04:36:20,999   adding 'tests/test_classify.py'
2023-02-15T04:36:21,003   adding 'tests/test_cli.py'
2023-02-15T04:36:21,006   adding 'tests/test_gtdbtk/__init__.py'
2023-02-15T04:36:21,010   adding 'tests/test_gtdbtk/test__main__.py'
2023-02-15T04:36:21,013   adding 'tests/test_gtdbtk/test_main.py'
2023-02-15T04:36:21,016   adding 'tests/test_gtdbtk/test_markers.py'
2023-02-15T04:36:21,019   adding 'tests/test_gtdbtk/test_tools.py'
2023-02-15T04:36:21,022   adding 'tests/test_gtdbtk/test_trim_msa.py'
2023-02-15T04:36:21,025   adding 'tests/test_gtdbtk/test_biolib_lite/__init__.py'
2023-02-15T04:36:21,027   adding 'tests/test_gtdbtk/test_biolib_lite/test_common.py'
2023-02-15T04:36:21,030   adding 'tests/test_gtdbtk/test_biolib_lite/test_newick.py'
2023-02-15T04:36:21,032   adding 'tests/test_gtdbtk/test_biolib_lite/test_seq_io.py'
2023-02-15T04:36:21,035   adding 'tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py'
2023-02-15T04:36:21,038   adding 'tests/test_gtdbtk/test_external/__init__.py'
2023-02-15T04:36:21,041   adding 'tests/test_gtdbtk/test_external/test_fastani.py'
2023-02-15T04:36:21,043   adding 'tests/test_gtdbtk/test_external/test_fasttree.py'
2023-02-15T04:36:21,046   adding 'tests/test_gtdbtk/test_files/__init__.py'
2023-02-15T04:36:21,049   adding 'tests/test_gtdbtk/test_files/test_marker/__init__.py'
2023-02-15T04:36:21,053   adding 'tests/test_gtdbtk/test_files/test_marker/test_copy_number.py'
2023-02-15T04:36:21,056   adding 'tests/test_gtdbtk/test_files/test_marker/test_tophit.py'
2023-02-15T04:36:21,059   adding 'tests/test_gtdbtk/test_files/test_prodigal/__init__.py'
2023-02-15T04:36:21,062   adding 'tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py'
2023-02-15T04:36:21,076   adding 'gtdbtk-2.2.3.dist-info/LICENSE'
2023-02-15T04:36:21,079   adding 'gtdbtk-2.2.3.dist-info/METADATA'
2023-02-15T04:36:21,081   adding 'gtdbtk-2.2.3.dist-info/WHEEL'
2023-02-15T04:36:21,083   adding 'gtdbtk-2.2.3.dist-info/entry_points.txt'
2023-02-15T04:36:21,084   adding 'gtdbtk-2.2.3.dist-info/top_level.txt'
2023-02-15T04:36:21,089   adding 'gtdbtk-2.2.3.dist-info/RECORD'
2023-02-15T04:36:21,160   removing build/bdist.linux-armv7l/wheel
2023-02-15T04:36:21,475   Building wheel for gtdbtk (setup.py): finished with status 'done'
2023-02-15T04:36:21,536   Created wheel for gtdbtk: filename=gtdbtk-2.2.3-py3-none-any.whl size=1826834 sha256=06f93a7c81ad0d432168b3c6813c6b41c6c62c8c772d3f5a3f7a07026002e417
2023-02-15T04:36:21,538   Stored in directory: /tmp/pip-ephem-wheel-cache-jw98osu4/wheels/16/49/f3/346c538e35315a84c4fa760b8d3c53cecb28d31eca3c7a7c4e
2023-02-15T04:36:21,577 Successfully built gtdbtk
2023-02-15T04:36:21,731 Removed build tracker: '/tmp/pip-build-tracker-whhzvfp6'