2023-02-15T19:18:10,836 Created temporary directory: /tmp/pip-ephem-wheel-cache-m58jq6ne 2023-02-15T19:18:10,838 Created temporary directory: /tmp/pip-build-tracker-1cqulpa8 2023-02-15T19:18:10,838 Initialized build tracking at /tmp/pip-build-tracker-1cqulpa8 2023-02-15T19:18:10,838 Created build tracker: /tmp/pip-build-tracker-1cqulpa8 2023-02-15T19:18:10,839 Entered build tracker: /tmp/pip-build-tracker-1cqulpa8 2023-02-15T19:18:10,839 Created temporary directory: /tmp/pip-wheel-nbrb461x 2023-02-15T19:18:10,842 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-15T19:18:10,845 Created temporary directory: /tmp/pip-ephem-wheel-cache-f_t1uini 2023-02-15T19:18:10,872 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-15T19:18:10,875 2 location(s) to search for versions of ms2pip: 2023-02-15T19:18:10,875 * https://pypi.org/simple/ms2pip/ 2023-02-15T19:18:10,875 * https://www.piwheels.org/simple/ms2pip/ 2023-02-15T19:18:10,876 Fetching project page and analyzing links: https://pypi.org/simple/ms2pip/ 2023-02-15T19:18:10,876 Getting page https://pypi.org/simple/ms2pip/ 2023-02-15T19:18:10,878 Found index url https://pypi.org/simple 2023-02-15T19:18:10,932 Fetched page https://pypi.org/simple/ms2pip/ as application/vnd.pypi.simple.v1+json 2023-02-15T19:18:10,953 Skipping link: No binaries permitted for ms2pip: 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https://files.pythonhosted.org/packages/a9/89/c4cb4b8cd4948da7c53ee47fdade23d1e1773ae1dd1fa3f9dc63d960d921/ms2pip-3.10.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/ms2pip/) (requires-python:>=3.7,<4) 2023-02-15T19:18:10,980 Skipping link: No binaries permitted for ms2pip: https://files.pythonhosted.org/packages/9b/9a/cfa6f1e08c4c2258b49987bd87449ad3ecfcea9669ac30608de7d7819460/ms2pip-3.10.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/ms2pip/) (requires-python:>=3.7,<4) 2023-02-15T19:18:10,981 Found link https://files.pythonhosted.org/packages/dd/74/1e02827cfc3a76d352432b4cbc914c47dc3fe3b952650998a062bb68121d/ms2pip-3.10.0.tar.gz (from https://pypi.org/simple/ms2pip/) (requires-python:>=3.7,<4), version: 3.10.0 2023-02-15T19:18:10,981 Skipping link: No binaries permitted for ms2pip: 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https://files.pythonhosted.org/packages/62/f7/677b34e1a4db4aaf6b187befe09145037578a11b7e537e2c57a4d0454504/ms2pip-3.10.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/ms2pip/) (requires-python:>=3.7,<4) 2023-02-15T19:18:10,982 Skipping link: No binaries permitted for ms2pip: https://files.pythonhosted.org/packages/80/0a/e3fd786d3b7676aeb0f2878531ae911bab8e4918e053ef083ef165f02972/ms2pip-3.10.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/ms2pip/) (requires-python:>=3.7,<4) 2023-02-15T19:18:10,982 Skipping link: No binaries permitted for ms2pip: https://files.pythonhosted.org/packages/dc/dc/811e068adc65f93e2788378ef066b9d68f324ea80ca7cdfce6ce61b217e5/ms2pip-3.10.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/ms2pip/) (requires-python:>=3.7,<4) 2023-02-15T19:18:10,982 Skipping link: No binaries permitted for ms2pip: https://files.pythonhosted.org/packages/17/35/292d48fefd6f34e50702923ec1f445f993ece76ab83cdd27ee9bd197dc23/ms2pip-3.10.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/ms2pip/) (requires-python:>=3.7,<4) 2023-02-15T19:18:10,982 Skipping link: No binaries permitted for ms2pip: https://files.pythonhosted.org/packages/31/0b/bc913212f600c260d230b56a47fbe9e5bedb784ae804c27dcea25586d888/ms2pip-3.10.1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/ms2pip/) (requires-python:>=3.7,<4) 2023-02-15T19:18:10,983 Skipping link: No binaries permitted for ms2pip: https://files.pythonhosted.org/packages/3a/b4/074e649f1680e2dc6ff0970f798f19d28e00b73cb02a6fc7f042e92b250b/ms2pip-3.10.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/ms2pip/) (requires-python:>=3.7,<4) 2023-02-15T19:18:10,983 Skipping link: No binaries permitted for ms2pip: https://files.pythonhosted.org/packages/98/e2/0a2b9b1bbc27bcc1112b915ae2cbbd0d7ff4441a29b12a00173f267554d3/ms2pip-3.10.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/ms2pip/) (requires-python:>=3.7,<4) 2023-02-15T19:18:10,983 Skipping link: No binaries permitted for ms2pip: https://files.pythonhosted.org/packages/c1/8f/130ece7dbb52d9c880176a7bebdb2df34c90b096a106a41d38b7d4c858ae/ms2pip-3.10.1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/ms2pip/) (requires-python:>=3.7,<4) 2023-02-15T19:18:10,983 Skipping link: No binaries permitted for ms2pip: https://files.pythonhosted.org/packages/b9/39/52f91dcc6c42bb2ec8a80ffb0631913e97c2f0af2f77240119e54a561c74/ms2pip-3.10.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/ms2pip/) (requires-python:>=3.7,<4) 2023-02-15T19:18:10,984 Found link https://files.pythonhosted.org/packages/36/1a/9c1689fb302dc195220d5fd48af06540c9f7300df962606dd9754f9d688d/ms2pip-3.10.1.tar.gz (from https://pypi.org/simple/ms2pip/) (requires-python:>=3.7,<4), version: 3.10.1 2023-02-15T19:18:10,984 Fetching project page and analyzing links: https://www.piwheels.org/simple/ms2pip/ 2023-02-15T19:18:10,985 Getting page https://www.piwheels.org/simple/ms2pip/ 2023-02-15T19:18:10,985 Found index url https://www.piwheels.org/simple 2023-02-15T19:18:11,142 Fetched page https://www.piwheels.org/simple/ms2pip/ as text/html 2023-02-15T19:18:11,143 Skipping link: not a file: https://www.piwheels.org/simple/ms2pip/ 2023-02-15T19:18:11,144 Skipping link: not a file: https://pypi.org/simple/ms2pip/ 2023-02-15T19:18:11,164 Given no hashes to check 1 links for project 'ms2pip': discarding no candidates 2023-02-15T19:18:11,180 Collecting ms2pip==3.10.1 2023-02-15T19:18:11,182 Created temporary directory: /tmp/pip-unpack-e6vgddrk 2023-02-15T19:18:11,229 Downloading ms2pip-3.10.1.tar.gz (5.5 MB) 2023-02-15T19:18:13,061 Added ms2pip==3.10.1 from https://files.pythonhosted.org/packages/36/1a/9c1689fb302dc195220d5fd48af06540c9f7300df962606dd9754f9d688d/ms2pip-3.10.1.tar.gz to build tracker '/tmp/pip-build-tracker-1cqulpa8' 2023-02-15T19:18:13,067 Created temporary directory: /tmp/pip-build-env-nyb3ojla 2023-02-15T19:18:13,075 Installing build dependencies: started 2023-02-15T19:18:13,075 Running command pip subprocess to install build dependencies 2023-02-15T19:18:14,279 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-02-15T19:18:14,669 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-15T19:18:14,693 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-15T19:18:16,354 Collecting setuptools 2023-02-15T19:18:16,380 Using cached setuptools-67.3.2-py3-none-any.whl (1.1 MB) 2023-02-15T19:18:17,934 Collecting cython 2023-02-15T19:18:18,474 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.33-cp39-cp39-linux_armv7l.whl (5.0 MB) 2023-02-15T19:18:18,839 Collecting oldest-supported-numpy 2023-02-15T19:18:18,855 Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2022.11.19-py3-none-any.whl (4.9 kB) 2023-02-15T19:18:20,183 Collecting numpy==1.19.3 2023-02-15T19:18:21,268 Using cached https://www.piwheels.org/simple/numpy/numpy-1.19.3-cp39-cp39-linux_armv7l.whl (10.5 MB) 2023-02-15T19:18:23,638 Installing collected packages: setuptools, numpy, cython, oldest-supported-numpy 2023-02-15T19:18:33,188 Creating /tmp/pip-build-env-nyb3ojla/overlay/bin 2023-02-15T19:18:33,191 changing mode of /tmp/pip-build-env-nyb3ojla/overlay/bin/f2py to 755 2023-02-15T19:18:33,193 changing mode of /tmp/pip-build-env-nyb3ojla/overlay/bin/f2py3 to 755 2023-02-15T19:18:33,196 changing mode of /tmp/pip-build-env-nyb3ojla/overlay/bin/f2py3.9 to 755 2023-02-15T19:18:36,096 changing mode of /tmp/pip-build-env-nyb3ojla/overlay/bin/cygdb to 755 2023-02-15T19:18:36,099 changing mode of /tmp/pip-build-env-nyb3ojla/overlay/bin/cython to 755 2023-02-15T19:18:36,102 changing mode of /tmp/pip-build-env-nyb3ojla/overlay/bin/cythonize to 755 2023-02-15T19:18:36,147 Successfully installed cython-0.29.33 numpy-1.19.3 oldest-supported-numpy-2022.11.19 setuptools-67.3.2 2023-02-15T19:18:36,162 [notice] A new release of pip available: 22.3 -> 23.0 2023-02-15T19:18:36,162 [notice] To update, run: python3 -m pip install --upgrade pip 2023-02-15T19:18:36,529 Installing build dependencies: finished with status 'done' 2023-02-15T19:18:36,535 Getting requirements to build wheel: started 2023-02-15T19:18:36,536 Running command Getting requirements to build wheel 2023-02-15T19:18:37,488 /tmp/pip-build-env-nyb3ojla/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:520: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2023-02-15T19:18:37,489 warnings.warn(msg, warning_class) 2023-02-15T19:18:37,565 running egg_info 2023-02-15T19:18:37,570 writing ms2pip.egg-info/PKG-INFO 2023-02-15T19:18:37,574 writing dependency_links to ms2pip.egg-info/dependency_links.txt 2023-02-15T19:18:37,577 writing entry points to ms2pip.egg-info/entry_points.txt 2023-02-15T19:18:37,579 writing requirements to ms2pip.egg-info/requires.txt 2023-02-15T19:18:37,581 writing top-level names to ms2pip.egg-info/top_level.txt 2023-02-15T19:18:37,606 reading manifest file 'ms2pip.egg-info/SOURCES.txt' 2023-02-15T19:18:37,611 reading manifest template 'MANIFEST.in' 2023-02-15T19:18:37,615 adding license file 'LICENSE' 2023-02-15T19:18:37,619 writing manifest file 'ms2pip.egg-info/SOURCES.txt' 2023-02-15T19:18:37,715 Getting requirements to build wheel: finished with status 'done' 2023-02-15T19:18:37,730 Installing backend dependencies: started 2023-02-15T19:18:37,731 Running command pip subprocess to install backend dependencies 2023-02-15T19:18:38,919 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-02-15T19:18:39,307 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-15T19:18:39,332 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-15T19:18:39,788 Collecting wheel 2023-02-15T19:18:39,807 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2023-02-15T19:18:41,359 Installing collected packages: wheel 2023-02-15T19:18:41,511 Creating /tmp/pip-build-env-nyb3ojla/normal/bin 2023-02-15T19:18:41,513 changing mode of /tmp/pip-build-env-nyb3ojla/normal/bin/wheel to 755 2023-02-15T19:18:41,527 Successfully installed wheel-0.38.4 2023-02-15T19:18:41,540 [notice] A new release of pip available: 22.3 -> 23.0 2023-02-15T19:18:41,541 [notice] To update, run: python3 -m pip install --upgrade pip 2023-02-15T19:18:41,749 Installing backend dependencies: finished with status 'done' 2023-02-15T19:18:41,752 Created temporary directory: /tmp/pip-modern-metadata-0irfyv85 2023-02-15T19:18:41,755 Preparing metadata (pyproject.toml): started 2023-02-15T19:18:41,756 Running command Preparing metadata (pyproject.toml) 2023-02-15T19:18:42,681 /tmp/pip-build-env-nyb3ojla/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:520: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2023-02-15T19:18:42,682 warnings.warn(msg, warning_class) 2023-02-15T19:18:42,708 running dist_info 2023-02-15T19:18:42,729 creating /tmp/pip-modern-metadata-0irfyv85/ms2pip.egg-info 2023-02-15T19:18:42,735 writing /tmp/pip-modern-metadata-0irfyv85/ms2pip.egg-info/PKG-INFO 2023-02-15T19:18:42,738 writing dependency_links to /tmp/pip-modern-metadata-0irfyv85/ms2pip.egg-info/dependency_links.txt 2023-02-15T19:18:42,740 writing entry points to /tmp/pip-modern-metadata-0irfyv85/ms2pip.egg-info/entry_points.txt 2023-02-15T19:18:42,742 writing requirements to /tmp/pip-modern-metadata-0irfyv85/ms2pip.egg-info/requires.txt 2023-02-15T19:18:42,743 writing top-level names to /tmp/pip-modern-metadata-0irfyv85/ms2pip.egg-info/top_level.txt 2023-02-15T19:18:42,745 writing manifest file '/tmp/pip-modern-metadata-0irfyv85/ms2pip.egg-info/SOURCES.txt' 2023-02-15T19:18:42,768 reading manifest file '/tmp/pip-modern-metadata-0irfyv85/ms2pip.egg-info/SOURCES.txt' 2023-02-15T19:18:42,770 reading manifest template 'MANIFEST.in' 2023-02-15T19:18:42,774 adding license file 'LICENSE' 2023-02-15T19:18:42,777 writing manifest file '/tmp/pip-modern-metadata-0irfyv85/ms2pip.egg-info/SOURCES.txt' 2023-02-15T19:18:42,778 creating '/tmp/pip-modern-metadata-0irfyv85/ms2pip-3.10.1.dist-info' 2023-02-15T19:18:43,058 Preparing metadata (pyproject.toml): finished with status 'done' 2023-02-15T19:18:43,068 Source in /tmp/pip-wheel-nbrb461x/ms2pip_2d390fdd455a45ceb5657e86470cdc77 has version 3.10.1, which satisfies requirement ms2pip==3.10.1 from https://files.pythonhosted.org/packages/36/1a/9c1689fb302dc195220d5fd48af06540c9f7300df962606dd9754f9d688d/ms2pip-3.10.1.tar.gz 2023-02-15T19:18:43,069 Removed ms2pip==3.10.1 from https://files.pythonhosted.org/packages/36/1a/9c1689fb302dc195220d5fd48af06540c9f7300df962606dd9754f9d688d/ms2pip-3.10.1.tar.gz from build tracker '/tmp/pip-build-tracker-1cqulpa8' 2023-02-15T19:18:43,077 Created temporary directory: /tmp/pip-unpack-n5vnsrb9 2023-02-15T19:18:43,077 Building wheels for collected packages: ms2pip 2023-02-15T19:18:43,082 Created temporary directory: /tmp/pip-wheel-rssnvg7c 2023-02-15T19:18:43,083 Destination directory: /tmp/pip-wheel-rssnvg7c 2023-02-15T19:18:43,085 Building wheel for ms2pip (pyproject.toml): started 2023-02-15T19:18:43,086 Running command Building wheel for ms2pip (pyproject.toml) 2023-02-15T19:18:44,024 /tmp/pip-build-env-nyb3ojla/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:520: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2023-02-15T19:18:44,024 warnings.warn(msg, warning_class) 2023-02-15T19:18:44,156 running bdist_wheel 2023-02-15T19:18:44,175 running build 2023-02-15T19:18:44,176 running build_py 2023-02-15T19:18:44,186 creating build 2023-02-15T19:18:44,187 creating build/lib.linux-armv7l-cpython-39 2023-02-15T19:18:44,188 creating build/lib.linux-armv7l-cpython-39/ms2pip 2023-02-15T19:18:44,190 copying ms2pip/__init__.py -> build/lib.linux-armv7l-cpython-39/ms2pip 2023-02-15T19:18:44,192 copying ms2pip/ms2pipC.py -> build/lib.linux-armv7l-cpython-39/ms2pip 2023-02-15T19:18:44,196 copying ms2pip/match_spectra.py -> build/lib.linux-armv7l-cpython-39/ms2pip 2023-02-15T19:18:44,199 copying ms2pip/spectrum.py -> build/lib.linux-armv7l-cpython-39/ms2pip 2023-02-15T19:18:44,202 copying ms2pip/feature_names.py -> build/lib.linux-armv7l-cpython-39/ms2pip 2023-02-15T19:18:44,205 copying ms2pip/retention_time.py -> build/lib.linux-armv7l-cpython-39/ms2pip 2023-02-15T19:18:44,207 copying ms2pip/predict_xgboost.py -> build/lib.linux-armv7l-cpython-39/ms2pip 2023-02-15T19:18:44,210 copying ms2pip/peptides.py -> build/lib.linux-armv7l-cpython-39/ms2pip 2023-02-15T19:18:44,213 copying ms2pip/exceptions.py -> build/lib.linux-armv7l-cpython-39/ms2pip 2023-02-15T19:18:44,215 copying ms2pip/config_parser.py -> build/lib.linux-armv7l-cpython-39/ms2pip 2023-02-15T19:18:44,217 copying ms2pip/__main__.py -> build/lib.linux-armv7l-cpython-39/ms2pip 2023-02-15T19:18:44,220 copying ms2pip/single_prediction.py -> build/lib.linux-armv7l-cpython-39/ms2pip 2023-02-15T19:18:44,224 creating build/lib.linux-armv7l-cpython-39/ms2pip/ms2pip_tools 2023-02-15T19:18:44,225 copying ms2pip/ms2pip_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/ms2pip/ms2pip_tools 2023-02-15T19:18:44,227 copying ms2pip/ms2pip_tools/dlib.py -> build/lib.linux-armv7l-cpython-39/ms2pip/ms2pip_tools 2023-02-15T19:18:44,230 copying ms2pip/ms2pip_tools/get_elude_predictions.py -> build/lib.linux-armv7l-cpython-39/ms2pip/ms2pip_tools 2023-02-15T19:18:44,233 copying ms2pip/ms2pip_tools/calc_correlations.py -> build/lib.linux-armv7l-cpython-39/ms2pip/ms2pip_tools 2023-02-15T19:18:44,235 copying ms2pip/ms2pip_tools/spectrum_output.py -> build/lib.linux-armv7l-cpython-39/ms2pip/ms2pip_tools 2023-02-15T19:18:44,239 creating build/lib.linux-armv7l-cpython-39/fasta2speclib 2023-02-15T19:18:44,240 copying fasta2speclib/__init__.py -> build/lib.linux-armv7l-cpython-39/fasta2speclib 2023-02-15T19:18:44,242 copying fasta2speclib/fasta2speclib.py -> build/lib.linux-armv7l-cpython-39/fasta2speclib 2023-02-15T19:18:44,245 running egg_info 2023-02-15T19:18:44,269 writing ms2pip.egg-info/PKG-INFO 2023-02-15T19:18:44,272 writing dependency_links to ms2pip.egg-info/dependency_links.txt 2023-02-15T19:18:44,275 writing entry points to ms2pip.egg-info/entry_points.txt 2023-02-15T19:18:44,276 writing requirements to ms2pip.egg-info/requires.txt 2023-02-15T19:18:44,278 writing top-level names to ms2pip.egg-info/top_level.txt 2023-02-15T19:18:44,290 reading manifest file 'ms2pip.egg-info/SOURCES.txt' 2023-02-15T19:18:44,294 reading manifest template 'MANIFEST.in' 2023-02-15T19:18:44,298 adding license file 'LICENSE' 2023-02-15T19:18:44,302 writing manifest file 'ms2pip.egg-info/SOURCES.txt' 2023-02-15T19:18:44,305 /tmp/pip-build-env-nyb3ojla/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'ms2pip.cython_modules' as data is deprecated, please list it in `packages`. 2023-02-15T19:18:44,305 !! 2023-02-15T19:18:44,306 ############################ 2023-02-15T19:18:44,306 # Package would be ignored # 2023-02-15T19:18:44,306 ############################ 2023-02-15T19:18:44,306 Python recognizes 'ms2pip.cython_modules' as an importable package, 2023-02-15T19:18:44,306 but it is not listed in the `packages` configuration of setuptools. 2023-02-15T19:18:44,306 'ms2pip.cython_modules' has been automatically added to the distribution only 2023-02-15T19:18:44,307 because it may contain data files, but this behavior is likely to change 2023-02-15T19:18:44,307 in future versions of setuptools (and therefore is considered deprecated). 2023-02-15T19:18:44,307 Please make sure that 'ms2pip.cython_modules' is included as a package by using 2023-02-15T19:18:44,307 the `packages` configuration field or the proper discovery methods 2023-02-15T19:18:44,307 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-15T19:18:44,307 instead of `find_packages(...)`/`find:`). 2023-02-15T19:18:44,307 You can read more about "package discovery" and "data files" on setuptools 2023-02-15T19:18:44,308 documentation page. 2023-02-15T19:18:44,308 !! 2023-02-15T19:18:44,308 check.warn(importable) 2023-02-15T19:18:44,309 /tmp/pip-build-env-nyb3ojla/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'ms2pip.models' as data is deprecated, please list it in `packages`. 2023-02-15T19:18:44,309 !! 2023-02-15T19:18:44,310 ############################ 2023-02-15T19:18:44,310 # Package would be ignored # 2023-02-15T19:18:44,310 ############################ 2023-02-15T19:18:44,310 Python recognizes 'ms2pip.models' as an importable package, 2023-02-15T19:18:44,310 but it is not listed in the `packages` configuration of setuptools. 2023-02-15T19:18:44,310 'ms2pip.models' has been automatically added to the distribution only 2023-02-15T19:18:44,311 because it may contain data files, but this behavior is likely to change 2023-02-15T19:18:44,311 in future versions of setuptools (and therefore is considered deprecated). 2023-02-15T19:18:44,311 Please make sure that 'ms2pip.models' is included as a package by using 2023-02-15T19:18:44,311 the `packages` configuration field or the proper discovery methods 2023-02-15T19:18:44,311 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-15T19:18:44,311 instead of `find_packages(...)`/`find:`). 2023-02-15T19:18:44,312 You can read more about "package discovery" and "data files" on setuptools 2023-02-15T19:18:44,312 documentation page. 2023-02-15T19:18:44,312 !! 2023-02-15T19:18:44,312 check.warn(importable) 2023-02-15T19:18:44,312 /tmp/pip-build-env-nyb3ojla/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'ms2pip.models.TMT' as data is deprecated, please list it in `packages`. 2023-02-15T19:18:44,313 !! 2023-02-15T19:18:44,313 ############################ 2023-02-15T19:18:44,313 # Package would be ignored # 2023-02-15T19:18:44,313 ############################ 2023-02-15T19:18:44,313 Python recognizes 'ms2pip.models.TMT' as an importable package, 2023-02-15T19:18:44,313 but it is not listed in the `packages` configuration of setuptools. 2023-02-15T19:18:44,314 'ms2pip.models.TMT' has been automatically added to the distribution only 2023-02-15T19:18:44,314 because it may contain data files, but this behavior is likely to change 2023-02-15T19:18:44,314 in future versions of setuptools (and therefore is considered deprecated). 2023-02-15T19:18:44,314 Please make sure that 'ms2pip.models.TMT' is included as a package by using 2023-02-15T19:18:44,314 the `packages` configuration field or the proper discovery methods 2023-02-15T19:18:44,314 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-15T19:18:44,315 instead of `find_packages(...)`/`find:`). 2023-02-15T19:18:44,315 You can read more about "package discovery" and "data files" on setuptools 2023-02-15T19:18:44,315 documentation page. 2023-02-15T19:18:44,315 !! 2023-02-15T19:18:44,316 check.warn(importable) 2023-02-15T19:18:44,316 creating build/lib.linux-armv7l-cpython-39/ms2pip/cython_modules 2023-02-15T19:18:44,316 copying ms2pip/cython_modules/ms2pip_features_c_catboost.c -> build/lib.linux-armv7l-cpython-39/ms2pip/cython_modules 2023-02-15T19:18:44,317 copying ms2pip/cython_modules/ms2pip_features_c_ce.c -> build/lib.linux-armv7l-cpython-39/ms2pip/cython_modules 2023-02-15T19:18:44,319 copying ms2pip/cython_modules/ms2pip_features_c_general.c -> build/lib.linux-armv7l-cpython-39/ms2pip/cython_modules 2023-02-15T19:18:44,322 copying ms2pip/cython_modules/ms2pip_features_c_old.c -> build/lib.linux-armv7l-cpython-39/ms2pip/cython_modules 2023-02-15T19:18:44,325 copying ms2pip/cython_modules/ms2pip_init_c.c -> build/lib.linux-armv7l-cpython-39/ms2pip/cython_modules 2023-02-15T19:18:44,327 copying ms2pip/cython_modules/ms2pip_peaks_c.c -> build/lib.linux-armv7l-cpython-39/ms2pip/cython_modules 2023-02-15T19:18:44,330 copying ms2pip/cython_modules/ms2pip_pyx.pyx -> build/lib.linux-armv7l-cpython-39/ms2pip/cython_modules 2023-02-15T19:18:44,333 creating build/lib.linux-armv7l-cpython-39/ms2pip/models 2023-02-15T19:18:44,334 copying ms2pip/models/HCD-2019.h -> build/lib.linux-armv7l-cpython-39/ms2pip/models 2023-02-15T19:18:44,336 copying ms2pip/models/TMT.h -> build/lib.linux-armv7l-cpython-39/ms2pip/models 2023-02-15T19:18:44,338 creating build/lib.linux-armv7l-cpython-39/ms2pip/models/HCD-2019 2023-02-15T19:18:44,339 copying ms2pip/models/HCD-2019/model_20190107_HCD_train_B.c -> build/lib.linux-armv7l-cpython-39/ms2pip/models/HCD-2019 2023-02-15T19:18:44,519 copying ms2pip/models/HCD-2019/model_20190107_HCD_train_B2.c -> build/lib.linux-armv7l-cpython-39/ms2pip/models/HCD-2019 2023-02-15T19:18:44,556 copying ms2pip/models/HCD-2019/model_20190107_HCD_train_Y.c -> build/lib.linux-armv7l-cpython-39/ms2pip/models/HCD-2019 2023-02-15T19:18:44,745 copying ms2pip/models/HCD-2019/model_20190107_HCD_train_Y2.c -> build/lib.linux-armv7l-cpython-39/ms2pip/models/HCD-2019 2023-02-15T19:18:44,930 creating build/lib.linux-armv7l-cpython-39/ms2pip/models/TMT 2023-02-15T19:18:44,931 copying ms2pip/models/TMT/model_20190107_TMT_train_B.c -> build/lib.linux-armv7l-cpython-39/ms2pip/models/TMT 2023-02-15T19:18:44,985 copying ms2pip/models/TMT/model_20190107_TMT_train_Y.c -> build/lib.linux-armv7l-cpython-39/ms2pip/models/TMT 2023-02-15T19:18:45,080 running build_ext 2023-02-15T19:18:45,147 cythoning ms2pip/cython_modules/ms2pip_pyx.pyx to ms2pip/cython_modules/ms2pip_pyx.c 2023-02-15T19:18:46,826 building 'ms2pip.cython_modules.ms2pip_pyx' extension 2023-02-15T19:18:46,827 creating build/temp.linux-armv7l-cpython-39 2023-02-15T19:18:46,827 creating build/temp.linux-armv7l-cpython-39/ms2pip 2023-02-15T19:18:46,828 creating build/temp.linux-armv7l-cpython-39/ms2pip/cython_modules 2023-02-15T19:18:46,829 creating build/temp.linux-armv7l-cpython-39/ms2pip/models 2023-02-15T19:18:46,830 creating build/temp.linux-armv7l-cpython-39/ms2pip/models/HCD-2019 2023-02-15T19:18:46,831 creating build/temp.linux-armv7l-cpython-39/ms2pip/models/TMT 2023-02-15T19:18:46,832 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-nyb3ojla/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c ms2pip/cython_modules/ms2pip_pyx.c -o build/temp.linux-armv7l-cpython-39/ms2pip/cython_modules/ms2pip_pyx.o -O0 -fno-var-tracking -Wno-unused-result -Wno-cpp -Wno-unused-function 2023-02-15T19:18:49,858 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-nyb3ojla/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c ms2pip/models/HCD-2019/model_20190107_HCD_train_B.c -o build/temp.linux-armv7l-cpython-39/ms2pip/models/HCD-2019/model_20190107_HCD_train_B.o -O0 -fno-var-tracking -Wno-unused-result -Wno-cpp -Wno-unused-function 2023-02-15T19:19:29,130 cc1: out of memory allocating 65536 bytes after a total of 433807360 bytes 2023-02-15T19:19:29,271 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-02-15T19:19:29,514 ERROR: [present-rich] Building wheel for ms2pip (pyproject.toml) exited with 1 2023-02-15T19:19:29,532 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmpphjzsjj6[/] 2023-02-15T19:19:29,532 [bold magenta]cwd[/]: /tmp/pip-wheel-nbrb461x/ms2pip_2d390fdd455a45ceb5657e86470cdc77 2023-02-15T19:19:29,532 Building wheel for ms2pip (pyproject.toml): finished with status 'error' 2023-02-15T19:19:29,535 ERROR: Failed building wheel for ms2pip 2023-02-15T19:19:29,537 Failed to build ms2pip 2023-02-15T19:19:29,538 ERROR: Failed to build one or more wheels 2023-02-15T19:19:29,539 Exception information: 2023-02-15T19:19:29,539 Traceback (most recent call last): 2023-02-15T19:19:29,539 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2023-02-15T19:19:29,539 status = run_func(*args) 2023-02-15T19:19:29,539 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2023-02-15T19:19:29,539 return func(self, options, args) 2023-02-15T19:19:29,539 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2023-02-15T19:19:29,539 raise CommandError("Failed to build one or more wheels") 2023-02-15T19:19:29,539 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-02-15T19:19:29,543 Removed build tracker: '/tmp/pip-build-tracker-1cqulpa8'