2023-02-17T11:45:03,874 Created temporary directory: /tmp/pip-ephem-wheel-cache-wirw7uio 2023-02-17T11:45:03,879 Created temporary directory: /tmp/pip-build-tracker-wdvuvqe4 2023-02-17T11:45:03,880 Initialized build tracking at /tmp/pip-build-tracker-wdvuvqe4 2023-02-17T11:45:03,880 Created build tracker: /tmp/pip-build-tracker-wdvuvqe4 2023-02-17T11:45:03,880 Entered build tracker: /tmp/pip-build-tracker-wdvuvqe4 2023-02-17T11:45:03,881 Created temporary directory: /tmp/pip-wheel-aojicmux 2023-02-17T11:45:03,889 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-17T11:45:03,895 Created temporary directory: /tmp/pip-ephem-wheel-cache-q79u1s0m 2023-02-17T11:45:03,950 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-17T11:45:03,957 2 location(s) to search for versions of pyhmmer: 2023-02-17T11:45:03,957 * https://pypi.org/simple/pyhmmer/ 2023-02-17T11:45:03,957 * https://www.piwheels.org/simple/pyhmmer/ 2023-02-17T11:45:03,958 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2023-02-17T11:45:03,959 Getting page https://pypi.org/simple/pyhmmer/ 2023-02-17T11:45:03,963 Found index url https://pypi.org/simple 2023-02-17T11:45:04,169 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2023-02-17T11:45:04,445 Skipping link: No binaries permitted for pyhmmer: 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https://pypi.org/simple/pyhmmer/) 2023-02-17T11:45:04,451 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/21/bb677b42abb107adf96a8e305659779332f1faece8c3c8b8227d6c447714/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-02-17T11:45:04,452 Found link https://files.pythonhosted.org/packages/9d/52/5dfdc7b0b49d72f6975c789255f785fb5adaed4d316dea2c1fd5752e3671/pyhmmer-0.1.0a1.tar.gz (from https://pypi.org/simple/pyhmmer/), version: 0.1.0a1 2023-02-17T11:45:04,453 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/5a/94c8ad40e16bd1b238703a8815bd68d90b0559ac8cbaa7a027d2a886978b/pyhmmer-0.1.0a2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,453 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/d0/24/aaa2a74692ac30b32f7da206479021eb206ea6e7dbb7023ad8bae97db1a4/pyhmmer-0.1.0a2-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,455 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/4a/d1cba5443443544a77b200f47f2ba3ab679ef974bbf51dbfefde401902f0/pyhmmer-0.1.0a2-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,456 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d2/bf/a7d9c65a9c2660474ad72338ca47427f6f78e6ad378026edf2fdce3019f2/pyhmmer-0.1.0a2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,456 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a8/f7/10d886b6e03cdf16a6123dc48687cf1aaa025ac2b17d902bce75d4785ea4/pyhmmer-0.1.0a2-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,457 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/54/8b3c37d0732fedc623776c24f703a10b069436039abc2cbbed14eff2d665/pyhmmer-0.1.0a2-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,457 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ef/4d/86ff1e09e523b7d38d5d88d507f4131d4e20348855bb73603693355baf99/pyhmmer-0.1.0a2-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,458 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/d7/a10594b0c3bac79e2526c5659789b38cd98675cf8bc600c7c386482f40ad/pyhmmer-0.1.0a2-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,458 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/f8/e76e388294f53736440bf078f3e6d407625ab53077c8da0a80c776aaf5de/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,459 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/94/945c8e50db0e658ccbda8abb26a0becd29e414bbfc9a2aa0a07329ac86b4/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,460 Found link https://files.pythonhosted.org/packages/a9/d8/7d1a3e189d29f5f57cfc2b5706e46d9c593228316d88d9791e4b6deaf818/pyhmmer-0.1.0a2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a2 2023-02-17T11:45:04,461 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/dd/ffe938b4db1f8230060a11a725500da00678d2431552685541e49f56a1cd/pyhmmer-0.1.0a3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,462 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/0e/8634c98e9bb007edb4d9b0504cd2325f0db0303124c2285405f422d48d60/pyhmmer-0.1.0a3-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,462 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ac/a6/5d0240be2817e6b3c876493903fdf300a05a4d27ab4ce3e71a86bb4e6e47/pyhmmer-0.1.0a3-cp36-cp36m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,463 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/05/76e3a2a9e1a8d8f2cc41a56712b6f44d518d44e697d8cf4dd501540233bb/pyhmmer-0.1.0a3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,463 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/0a/6f7079e3579f2729c0bd8d504f321336e981bb7e6d39cd17ec3077a5fff4/pyhmmer-0.1.0a3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,464 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,464 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/42/e3/1ae53fd316b2f4d952c9cc566068781a0e0bd676e741f328ae2c902d1490/pyhmmer-0.1.0a3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,465 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/ee/8fa3f99cb062863c91e73654f21024373cae0187e5e3476275c1cf9d06f5/pyhmmer-0.1.0a3-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,465 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8c/67/4cb6f3ff89e47e060598f940d771799fdd7b1427544cd8da94ce895e9e4f/pyhmmer-0.1.0a3-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,466 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/8f/2a/abf43d38a2414b719e57bf5c5edb0803179f6d0e6a16fc2eed28cc77b6f5/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,469 Found link https://files.pythonhosted.org/packages/54/29/75df6ece9030041c44fff57220bf48950d4c653ddca7e02a54d4d5fc21cc/pyhmmer-0.1.0a3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a3 2023-02-17T11:45:04,470 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/0b/15f39d875ef0cbadfd3b069916f632409989918429ec2604eec53cd7e448/pyhmmer-0.1.0a4-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-02-17T11:45:04,470 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/48/3c/336700ba033d737f5e839fd63e3f0aa4946a66870f7d54f3825ac34c1a95/pyhmmer-0.1.0a4-cp35-cp35m-manylinux2010_x86_64.whl 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https://files.pythonhosted.org/packages/8f/e9/35bc8f987689ae229a69375d849818e3e444970e5c0a506c2ae4a9b67b37/pyhmmer-0.3.0-pp37-pypy37_pp73-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,552 Found link https://files.pythonhosted.org/packages/30/13/7489e047ac14f57c8b24a4ae33feebb37a07b8c419bbd4fba9f6d4e701a6/pyhmmer-0.3.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.3.0 2023-02-17T11:45:04,552 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1b/fc/a6dcd6a8fd03829823c055a2ac2ee97c7d295f755d7ffcb5a1a9f8590396/pyhmmer-0.3.1-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,553 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/ba/3bcc8eddba05cf995bb5a718f904e08875159d430687c8a65f3cdcf1ea24/pyhmmer-0.3.1-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,554 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ce/5b/b92aa85314f24f4a19f66f18cfa3c6f3807594d7c3a23a8bfb5cfd92c282/pyhmmer-0.3.1-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,554 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5b/ec/8fc61155ad090117ec91574677ffe7be2540b8ac1eda05aac39b04b2baf7/pyhmmer-0.3.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,555 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6f/af/d847ec7dced017b36394aa1f1b1322f561b68831d0c82c5ed4198c10b4c6/pyhmmer-0.3.1-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,555 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b6/2f/ed4c88a0ff74bce8781ecc75dd6d34d6d6c4f7dbb6f8fc7538812fb1bcb8/pyhmmer-0.3.1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,556 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/74/ba/2071d1002491f10b45fe057f8707b7f879546443a18ed0acb9a9486d3033/pyhmmer-0.3.1-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,556 Skipping link: No binaries permitted for pyhmmer: 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pyhmmer: https://files.pythonhosted.org/packages/e4/3a/f544d871dbcf4c96751941cce04f2d877ea48505e5af223dc40f723c442c/pyhmmer-0.4.0-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,564 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/bd/9858bf2ec674d3a6470534bc5146583b7f4667c337fd0c73292d0d1aa6c3/pyhmmer-0.4.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,564 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2b/f6/64fc4c3df308f1d50c90469090967e8d5acfb55a9c4bea7bcbeca33aa95e/pyhmmer-0.4.0-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,565 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/b8/54/9ebe75c4056daa0c0eb9f2b11fe62361d3a8b5e54818a528d8ca509e8986/pyhmmer-0.4.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.0 2023-02-17T11:45:04,568 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2a/f4/575177c27da35c5052bc8cfc63454f7af5b948e89f3d9350cb061c3fd679/pyhmmer-0.4.1-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,569 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/30/5f/cc29c5de73f9915649ae84abdd07e3e6a6d4890566c50d9fa5417ec42b74/pyhmmer-0.4.1-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,569 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/02/a8/8b04beee17f5087bd7c178fa5e1cb4ee877755dd1b0511206b6632548c29/pyhmmer-0.4.1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,571 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/91/08/fde1653784e16bccae316a78694011f0cf56fe74706825db29840d06e087/pyhmmer-0.4.1-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,572 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/bd/08e876d81d61cd14279d7cc453060e38df9c59282b389c2789bd7742813b/pyhmmer-0.4.1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,572 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/84/f5/5f83239790be66db9ea89781295020172d20ccc6d1262f4064dc2c1170cb/pyhmmer-0.4.1-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,573 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/35/55/bd514b80616381411b763ae1a275d384bb2261abc06f8b32e95dedf7aa37/pyhmmer-0.4.1-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,573 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/09/c5/f6909bd330534d7afba8a9a3c4618ec0bc31510ed253d98d18b38d886120/pyhmmer-0.4.1-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,574 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/94/8c/cdb2dc2c6e4427ad1c2e0f0a2975d909444e0d7774d45a09df331f5bef53/pyhmmer-0.4.1-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,575 Found link https://files.pythonhosted.org/packages/61/90/4a9c6bf89ac154d48db2cee3bc238d00395d80229e6ac24e6e3b576b5856/pyhmmer-0.4.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.1 2023-02-17T11:45:04,576 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/48/a36c888751b3dd9eb63c3c1c5ed163a6d154ae00f77d18a044e3fac082d0/pyhmmer-0.4.2-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,577 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c3/5a/8a0de4d3424898a336c5c6c1d9d1de7cc9e09ec0ce0936b04e309c71b66f/pyhmmer-0.4.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,577 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cb/12/1567eade5703ae7153f55256d5f0a404a77a5d40b286e7a20379f5d96d60/pyhmmer-0.4.2-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,578 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8a/aa/09b2d512f1b75ed279317eba38e320204f0cfa49094f83211aede16286ce/pyhmmer-0.4.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,578 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/21/3a09a81de850eb81ab720eb05bb1d1362070b1cbbc6a6b7b1edf701920d4/pyhmmer-0.4.2-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,579 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/43/19411901fe99dd7038ebb98fabd2b79062b2944bec551d0b06bd9909adc4/pyhmmer-0.4.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,579 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/15/c9/ffa040555c4ae3673221436506c8c272c22a53bd9e6a54efe0157d9c2972/pyhmmer-0.4.2-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,580 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cb/06/a2fc008cfdd553285325cf8373f3b6af85bb7cac0e294f45948bf1f282aa/pyhmmer-0.4.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,580 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/05/dc/0ed9ba672cc508bc15b4faf62a6444434e824ded77cfaf60662d90cb9601/pyhmmer-0.4.2-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,581 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9c/5e/212fe49995ccad358150012abf2da8ffbc25f024436b6fdcc89173e95b32/pyhmmer-0.4.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,581 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/9e/486d5da6d404842d00eabfbb1d7a25ffc0c49503dd7d267f1a6a701840e5/pyhmmer-0.4.2-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,582 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/88/b8bb0c20875f4638bb7d600c4c3dc65eb742b3a9833c730aa4915e94aa9a/pyhmmer-0.4.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,583 Found link https://files.pythonhosted.org/packages/2f/93/fa15885ede25f87ac2fa5e2cef12831bb8747b7e8455982ca2942ba61c7b/pyhmmer-0.4.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.2 2023-02-17T11:45:04,584 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/bf/5f/6a88535a37b4de01584d62e008fb415adbe3f1440950dabba648943aa3c1/pyhmmer-0.4.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,586 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/6c/ec2ff99e8dc22520805ecf43ff22369a1ca0228cbd6fabfc3de0d7695481/pyhmmer-0.4.3-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,587 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/9a/8df126ab5ccf2278e9b3414c26f53bf01b480164abcc11c9d2d56d9f67f4/pyhmmer-0.4.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,587 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/ff/ba/e2347228e6bc83d22820f46bf33ed8558ce1128a60128edd2b9bd770078e/pyhmmer-0.4.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,589 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/9a/d5447b14a91a994bd2ec38a1a4880c29c93bce74e1aa7a328a794901a870/pyhmmer-0.4.3-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,590 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/eb/87/8074c4e8896b87ef161b2490f525315f70c4783e567cfc15679bdab1f059/pyhmmer-0.4.3-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,591 Found link https://files.pythonhosted.org/packages/4f/77/3499166ca2e4ca1b8736bebd9082787c5bb88478c98fe14970e88cdecf07/pyhmmer-0.4.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.3 2023-02-17T11:45:04,592 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6a/9b/b6aa00ca89a0f7a238d2f23a241416e7051d7ba24fe7505d1ec33c7a21e5/pyhmmer-0.4.4-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,592 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e0/6c/20245a7c295a2eca32fe7db3dec34c0c581c6c2ed0ce926cafe318eb2259/pyhmmer-0.4.4-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,593 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/6f/02/c2ac022076a9b264f91a0f7e6b08a89934d5e1435943cb8b39304cdb7447/pyhmmer-0.4.4-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,596 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e9/d1/2c4a7021f650815ccddea11adf8506dba8590d6f1e1a82050766b963fe5e/pyhmmer-0.4.4-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,597 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/91/78/eefaf55976164ad3550c2f76c6e9c732d79b7c68e1abbbfa98646d756a86/pyhmmer-0.4.4-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,597 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/08/8f9539ba0d0e00aa7cdd16db85ffd3ee0716b515167d95efe68b11c0f583/pyhmmer-0.4.4-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,599 Found link https://files.pythonhosted.org/packages/59/cf/064c29541b6805d8ef36046f2b0764c4ba246e887a2e263226359bc2776f/pyhmmer-0.4.4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.4 2023-02-17T11:45:04,599 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/ad/76b4338792226f636651db9e66611a539847463a0f2265a571a24487fafa/pyhmmer-0.4.5-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,600 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/36/11/9211817ba7eb6aa848578017977e3ea4d42a5f2ba76a5a2c0c71d5984d6a/pyhmmer-0.4.5-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,601 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/a6/ee5ca7c4a3dcf82cf0f0dd5418c9fddad82149867352332d1feed8528cec/pyhmmer-0.4.5-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,601 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8e/ab/aaf80ebbba238a42a3f37e794ee56fad608ef5c5880dc5701d044d5720fb/pyhmmer-0.4.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,602 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/ff/75b42f302eaf3eae6f87dae0023a54f5bb0c869613ce730bbb064afe57d8/pyhmmer-0.4.5-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,602 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8a/3c/c22f961311a96364b2fc84ebcd25ee75ce9111f27c9eaf48c1faeeafe8c7/pyhmmer-0.4.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,603 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e5/94/33f25a0d8f7761ac55acd5839c50078efe810b1e1ae0006113ca92c58d90/pyhmmer-0.4.5-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,603 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/db/a3/c5f8dd1e931959d9c38df19fc937c6cf8568174e30ea2c2a86849cbd4b01/pyhmmer-0.4.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,604 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1e/36/0407821105d77948e7d703ee4aeacd2cead5cf317179db06508f7cdf7ce3/pyhmmer-0.4.5-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,604 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/11/86/9beee426a65a90eca53de4f3b0116b562bcbcf6eadf403ec83ae1b312a13/pyhmmer-0.4.5-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,605 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3b/2d/e2a6dddd83bb0e389b0fc62449badff092ac664046c82ed718b5102b08f4/pyhmmer-0.4.5-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,605 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/9e/c179587a659325aa519390efba2fe7775178a111888fe32ba0978fd91205/pyhmmer-0.4.5-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,606 Found link https://files.pythonhosted.org/packages/c3/4c/926f71ac0913fbe2426f5f3ac8071edb4e700591b690c4acbaa7b559fb38/pyhmmer-0.4.5.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.5 2023-02-17T11:45:04,607 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/af/85534ee68bcdcb07d92d7630536659edaf435f0e7f8784189c53af637228/pyhmmer-0.4.6-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,608 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/03/d3/691d493cfc4d37f8f099ec52179d86fffaed4c9e3a6b9d76f6a3b5cf0e27/pyhmmer-0.4.6-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,608 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/f0/343198b3cebda51800efd71bc6001f5754a69c364da0f5571a5c4e91965d/pyhmmer-0.4.6-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,609 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ed/2e/efbfaaabf781ffd21b425c7cbe4dca8215c22388213aeec10b953c320cc3/pyhmmer-0.4.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,609 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6e/bc/1a349bbc9da921811a3c5f385dcb25819223672145a033539eb8acfa762e/pyhmmer-0.4.6-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,610 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/b6/432a099063555660c698ddf22c27a9f0e253ea7bf0b357dbcf9deb53f552/pyhmmer-0.4.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,610 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5e/44/cc860850904897b27fcb884a05986159a1ea08e238150aedba27f5c2a8ab/pyhmmer-0.4.6-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,612 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ce/14/ced57dff0f434c8fe2d84ed1f74b33d0dcc8b8dfd3b3a9ae9aa59f3d601f/pyhmmer-0.4.6-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,613 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/80/ef4da6ee20a7937f2a3e3c58bf45519a91890feda2461bc18f353ce70fee/pyhmmer-0.4.6-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,614 Found link https://files.pythonhosted.org/packages/bd/5f/6e0db077ed2e1073b9fe7c4b18df5774bb86c2aa27f191713cd3f3aab53c/pyhmmer-0.4.6.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.6 2023-02-17T11:45:04,615 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/26/20/dc39dffff630017b87930177ac6c5e7d8621d57feca523d60c631609cb49/pyhmmer-0.4.7-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,615 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/f4/eccba2715b5b099cee52cddda59b3e5f8344071045f7c0c4567d3a3e32d7/pyhmmer-0.4.7-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,616 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/d9/04/036c8ea00e8388dba6b116f4914df1065d7856f786d5c6458a1bd1ec6576/pyhmmer-0.4.7-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,622 Found link https://files.pythonhosted.org/packages/f1/eb/1328eb9c4ca58a684b9b210a51636a5294e6f6019675b0181c8a9c567ea3/pyhmmer-0.4.7.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.7 2023-02-17T11:45:04,623 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/60/97c5cfc22bf1d26475087e45455641599ca1e2910e670d9c72604508aee2/pyhmmer-0.4.8-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,623 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/40/22/099da301d77a3f512bde56a54fa5272e937818843f8be96aa46089071f4f/pyhmmer-0.4.8-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,628 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/76/477e37aee671104bb5d1022eb0ff641ce700d639a36961694ba9710af8b9/pyhmmer-0.4.8-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,630 Found link https://files.pythonhosted.org/packages/5a/91/1166980fd7eb5106ef2f34ede5ae0043daf2f276f05b0e9f93cc2d968827/pyhmmer-0.4.8.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.8 2023-02-17T11:45:04,631 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/97/4247b2ab3b52d8ab9d4fda6619c93d428c4e364ebea041e93b7236ade4a6/pyhmmer-0.4.9-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,631 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/7e/b349dc728eb72f78b0ac0b1cc9a7530000740584fcebadda7b93d0f13a0d/pyhmmer-0.4.9-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,632 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/50/0d/6a818b85e852443ac1fa4ede30e18d5d4a4b3c04616f84a48f5cb5d2f664/pyhmmer-0.4.9-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,632 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/07/442980e0fc7b4d336157fd80d843b3ad0b71709087b0daf910f2beee93cd/pyhmmer-0.4.9-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,633 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1a/41/f5b4ffcedcf3116573ff5740de4877723f0d69b7527ece4a794069de2235/pyhmmer-0.4.9-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,633 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/78/a6/d21ba62d70e38f7b3829c69be9179cea416599a8ee952c8f4ac5503bfd04/pyhmmer-0.4.9-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,634 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/49/53/6428ce4322f6af35747f3f7c3829ebaeb05bab2eae6d5ff39c46cb1455e2/pyhmmer-0.4.9-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,634 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/00/b0/8daba4b0c9507fac1725a9005e88e8560b66e15d1d29a422980ae2caf987/pyhmmer-0.4.9-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,635 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/de/1d/76c728871c542de627e56683ecd2768bad8019744f575bdfe037fbf7889a/pyhmmer-0.4.9-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,635 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dc/c9/cf8188802659d5a599e884c8f9329498069ed3eb8bbe8f9de0152f825dac/pyhmmer-0.4.9-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,636 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/ab/362d371895cdd48c56963d052e8540b1d1c2261bf7dcd0acced3c6f1b10e/pyhmmer-0.4.9-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,636 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/44/e509d304b066af1563b6fd16c3535edd2c556f2f2ae9d8d3a00b85a7550b/pyhmmer-0.4.9-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,637 Found link https://files.pythonhosted.org/packages/8b/25/0adc73af00203eb49a7254b26129b5c0cfd6acbe398f18dbdab67b24c638/pyhmmer-0.4.9.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.9 2023-02-17T11:45:04,638 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/6b/41a4a5002c8f5b4ad25080ea07631927aee72b11b316652528f856281f9d/pyhmmer-0.4.10-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,639 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/b0/e5f3122d4d7a7e8688f726e8ed313982cac77c095554f1cce97ee5fba6d8/pyhmmer-0.4.10-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,639 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/ac/2db59c94139155e1241fabf650a8f30b238a68d13ca40014a75aece65b74/pyhmmer-0.4.10-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,640 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/06/ad/aaeafd77e0037312873a136a3c2165a5eab10ae37f56cb60b8c6de7442b4/pyhmmer-0.4.10-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,640 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/05/87/24601e2b81fedba09b3a003fd1e4fe78c8cd252767663acd9dbc63d1784d/pyhmmer-0.4.10-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,641 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cd/6e/9ab04139587efaeeceefb0a5e10178b14c61abdf67a854fc0430b6c8af80/pyhmmer-0.4.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,641 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/63/e4a944ac648642739f5dd85127803e47939202e025e0a9ca9fccc100eba1/pyhmmer-0.4.10-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,642 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,642 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,643 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,643 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f1/6d/ef6e6e92eb4925da759c64c881ff811f5ea4073b826b2466fe08a4ef1698/pyhmmer-0.4.10-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,645 Found link https://files.pythonhosted.org/packages/41/d9/e68b956d0a82e66223ad23fd46e15bcfe535809fe2c7fe38dc4f324c066c/pyhmmer-0.4.10.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.10 2023-02-17T11:45:04,645 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/70/75/a01b9274d74aa22fb3d4e4df3677f9e0fd8d6d96aac7918af9e532feabb9/pyhmmer-0.4.11-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,646 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/fc/4919fc4e0f15c48c060ef04908af7e4576aff4a5aef06a7fe8876496716e/pyhmmer-0.4.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,646 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/62/30/178be3d6c5dffe69cf886beff8302927e15d5ae2b92e9cef7f2f3fd0f43b/pyhmmer-0.4.11-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,649 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/63/9b/dc1fc0f379310382669aad49b6281cf3703f46662fc8d968b0b9ca0d7e8c/pyhmmer-0.4.11-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,649 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5c/54/4cba0bf00660fb32bc4e76006a76b20eaa4f694f49f37994995c6b0a4e1e/pyhmmer-0.4.11-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,650 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/95/1c/5118252d96ee71ccad56ad081fcff29e7af31ea85b9e94b97911df3db5e3/pyhmmer-0.5.0-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,657 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b3/e2/9bdf705fc5813f94d82ab2dc71ee9f07724caa43629235a845bc6120b5cc/pyhmmer-0.5.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,658 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/20/0926ec071a4373f167f1c3265c1fe4d2ace1d71e85e6b37bd8a66dd31925/pyhmmer-0.5.0-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,658 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d1/ab/7448d935505b12a4a865f273b51c5e6a63ebacc6d3e98acb23b2133c1c8c/pyhmmer-0.5.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,659 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/15/f3b826ba98bfbc9386e628d9b6fa5237a0e761274a1e84a6e1042fa55784/pyhmmer-0.5.0-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,659 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/66/e6/77a0ac512c431181dcb2ea9d41912a09518dd4514689bcf035a31576e479/pyhmmer-0.5.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,660 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/53/3e5af9674d0cb1bbe737f2253f9ade02ccb8d84835568e6d76c2de00e3e1/pyhmmer-0.5.0-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,660 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/8e/3030e8640238fe995a33b34bbcf073e3c37859cb8cddab5badde1c9f698d/pyhmmer-0.5.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,661 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f7/37/f35d1b12f6758bcee4c013957c23e7719e1db5795f37bf64e4367b9992b8/pyhmmer-0.5.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,662 Found link https://files.pythonhosted.org/packages/d4/b4/860e63999b6827d880f4985cae22adc88e92ab2e2b06e954abb60be2d411/pyhmmer-0.5.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.5.0 2023-02-17T11:45:04,663 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/83/81/e44ca051aa0c14b3d371da0e11c53b8c97915c587a4d2d8958b761bca739/pyhmmer-0.6.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,663 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/24/ff258c00e8a3d8f9d0f3a34f32f3405bee99ef0339a6fc4d529b6970cc49/pyhmmer-0.6.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,664 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/98/b4/4fb7c0d1956678b92ba1deac8e1f26fe6391e362a88aac7a1c6743fa85e2/pyhmmer-0.6.0-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,664 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/aa/cb/e9b4113ab1049e1f13828043ee41dec823111fa0d1ba95b8ed17aa2479da/pyhmmer-0.6.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,665 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e2/16/950a9891b018accdc4cf2eac23cd4b2cc64eced8b6774a206ac9bdcfe79f/pyhmmer-0.6.0-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,665 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5b/e5/7dae65e0e3f3724535d49307db46975b4eb1bc62cc77a1b2dd26ddc308a9/pyhmmer-0.6.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,671 Found link https://files.pythonhosted.org/packages/66/34/775e5243113c2d97ae0ed9e6a39f145549bf85c6215840b728fa9a3f6b89/pyhmmer-0.6.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.0 2023-02-17T11:45:04,672 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/02/87/0d2511754cabbe05b89d15eea01a63f886dcf4697934c121df79b47a281a/pyhmmer-0.6.1-cp310-cp310-macosx_10_15_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,673 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/25/4a/2db5464d2bb8e41bb346060fd9c3ceae2043c60af6621f04c8e49dbecae9/pyhmmer-0.6.2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,685 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/a0/4d7a8f68dc85cd4cf70a39afc592ab67a2e703149887dc78f4d2031a3d1c/pyhmmer-0.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,686 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/b8/a5edf3701cb051f9b8f397cc0ad5312bad4eb6eb761c99ec294b21c922f7/pyhmmer-0.6.2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,686 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bb/a1/103087f3aba399a852295b2865a66357570a2c0a5c1c98ae1cce916ab468/pyhmmer-0.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,687 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/e1/4d9ff4eeaef082868cd75110599e2b123191d2d28570b52f837c7b4e8c31/pyhmmer-0.6.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,687 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/ae/0b5f48c0b450b59edc60b80673c1c1d3a476fd0e1a67227c98bc24f5e119/pyhmmer-0.6.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,688 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/42/f72235b8fff6279f6f597c4766b42e5bf4d5f99b8952aad09262c191cb0d/pyhmmer-0.6.2-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,688 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e8/42/0642f761e61259b3c5263fe33ff1b94fa5db04f416c2bde2b620daca9b59/pyhmmer-0.6.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,689 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/b8/cc677cadee7a7014e6700c87d8ff24d33d9118b6d1564b6b2660ddb7ca17/pyhmmer-0.6.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,690 Found link https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.2 2023-02-17T11:45:04,691 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/53/70ce5950fa95a9f6c4c296f2d08ce0de8b78d66054f35746c9e38e5a7287/pyhmmer-0.6.3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,691 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/80/ca9f919c80b20030c3f65ef28bfa53c95453b69e7a24ac429964df65c7d0/pyhmmer-0.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,692 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/d1/c6278687d5c1b292bdb69419cb3c241a33cd049487e3f6f8c1ea49ae2f63/pyhmmer-0.6.3-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,692 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9b/fd/18eb2593b4e78f2b4c354ab2c27f44c7005c871cbb88f5979363f447a3f7/pyhmmer-0.6.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,693 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/3d/29a3b664affa3d543bf179c4bc564028436d2d664750d07cb6747610d0bb/pyhmmer-0.6.3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,693 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/8a/c9f6d67ff2081be71d5bab224f86dc9fbba04b3a9005d98d1bd4e7abe711/pyhmmer-0.6.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,694 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/40/6efcf88705d32d27951d1d664a8cbb2d43e7b31afcd44c281b24d02f6f0d/pyhmmer-0.6.3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,694 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/4f/5c7b8169544823f5a72bc2c6471a8f0d1f4d009ebab0ed93cef5c1e770cf/pyhmmer-0.6.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,695 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/b5/82b7212a91c29b78d1de6a8d701bc49bf33965a2f312f12892b56e66d6cf/pyhmmer-0.6.3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,695 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e7/cd/e8865ac7b2f95a62f3f31ecc1897006d8bd88d14516a8ab91409fcb4ed0c/pyhmmer-0.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,696 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/2d/2fa37cb9c2b146fbcb6b616cf04750e7cb0654d9f3654426f5c34ec986a6/pyhmmer-0.6.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,696 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d3/8a/1f93b031bf44594726d5381ae9e701b44147707375140864becad63dc960/pyhmmer-0.6.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,697 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/fe/6d1566d1b58a9cd0519ee81760177350e2bbba31683227a426e5485cfd61/pyhmmer-0.6.3-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,697 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/30/d4/c43a67e5b31e63a52e7a4204502adf4e43e7c3d5b2f453789d73935dd027/pyhmmer-0.6.3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,698 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/63/f7/a794532449c381535fbf2955c1707bc89a823d7454658df2ac13eb83d6d1/pyhmmer-0.6.3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,699 Found link https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.3 2023-02-17T11:45:04,700 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/01/2646aeb1261cb03ab15fbfb6bc902ea896e75f25e5ed38ac45be33375696/pyhmmer-0.7.0rc1-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,700 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/49/f6/375ea7dec9ec46fe919687f992bf2f8326a7f08449a94b3fa316a02d67de/pyhmmer-0.7.0rc1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,701 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1f/aa/9f76d8281d452ce142cc95cbfaeac15c76b2960949b2f5c9e12695e53cbe/pyhmmer-0.7.0rc1-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,701 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0f/68/dd15664d24aceaef5e94f961bffa45d9095d8f8499d64e78eddddd1ef7a9/pyhmmer-0.7.0rc1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,702 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/e7/66/7146d3ffbb6917adcb31600e6b5037ecaafdf2198efaabe8b26519d3aad1/pyhmmer-0.7.0rc1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,709 Found link https://files.pythonhosted.org/packages/07/f9/aa30f9a062a03215706fd914a193d012c869409f0883406963f5097ec7f1/pyhmmer-0.7.0rc1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc1 2023-02-17T11:45:04,710 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/64/27ba87f3a6b5bd028bde8e63579e4fc7729abb207b6e9e700cbf51dc7b30/pyhmmer-0.7.0rc2-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,711 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/19/9f/c9bd67b4506ea74c87aa2170245f52a7ef31d9ab0091c1f341c6cf76fa9b/pyhmmer-0.7.0rc2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,713 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8a/03/ee7fbc006cfd40bacc68f90e34ae6c0648eeb66e63f1702c57a595f23beb/pyhmmer-0.7.0rc2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,713 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/f6/b77002e48c526bdb1ec0bee0697ee021f31702ff7618adc1f7c8458638d8/pyhmmer-0.7.0rc2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,714 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/56/143d6ec67af6539abafac7d5ed7eda2f7dc4a22dc7ebeeb491a808a923a7/pyhmmer-0.7.0rc2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,714 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c8/35/66d385727a9178511182bfe841a12d45f7f64425fdfdd9ed0d93e6a74bb8/pyhmmer-0.7.0rc2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,715 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e4/d8/d5d5bec33f7ef7e4162e43e846cec992055d17864c098a1e55b96a34050f/pyhmmer-0.7.0rc2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,715 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/39/c0/6a46e969f7c1f77f5cc19011827469176b0569cbee1f2ec80f5865f49ad6/pyhmmer-0.7.0rc2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,716 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1c/92/5602f15a7bbb92b08e92e4636813015754067aa97c0511ea1801852c1e66/pyhmmer-0.7.0rc2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,716 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/ff/ece5bd11cf4cc3ec6f664f0e3a111ad6dcf207d3f6ec2ad96165259a412b/pyhmmer-0.7.0rc2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,717 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/31/df/48df1569e9c0b21ad86060b804c14fb3c91c3fa5aa95f09db8ff0e4c83e6/pyhmmer-0.7.0rc2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,720 Found link https://files.pythonhosted.org/packages/eb/b3/da26ba5e02d827e39ecbda73b5d7a7dbb805e94d3ae8829f3ce2adc8d027/pyhmmer-0.7.0rc2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc2 2023-02-17T11:45:04,721 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/91/36a44e2e838e58b36ebb192a899e6f889f112248fd08d1a877774db87a66/pyhmmer-0.7.0rc3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,721 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5e/99/f426e48fd4c851ff69b0d669d9c7f782c7c8c0a4b753dd93d7dcdc18a91f/pyhmmer-0.7.0rc3-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,730 Found link https://files.pythonhosted.org/packages/cb/78/d51baf5d1a2bd5040c253ca8a847b92f6a361d08ed6e108ae8ff10fae578/pyhmmer-0.7.0rc3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc3 2023-02-17T11:45:04,731 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/70/8c/41e7a4d44918a08c02a8b529d11d45180fc640cf2d21cc83427f0e5cfe06/pyhmmer-0.7.0rc4-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,732 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/ab/c0/3ef8ced20ac64ab83d16d855b23540751c1626d1d5b8e8cee4440bcabfb3/pyhmmer-0.7.0rc4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,737 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2a/df/a287f8b111ba8688c5c58e772e6d276fb3c14515249e39a50515160a85d2/pyhmmer-0.7.0rc4-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,737 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/71/e5/96ce896b08d17b9114817c947683e144e760f58bd9f48f53f5436ef25079/pyhmmer-0.7.0rc4-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,738 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/0d/c4/049d1b55164a4593e7d7ef55b6f0364b03a7c863f7f9d6a4730c5995dc20/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,741 Found link https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc4 2023-02-17T11:45:04,741 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/db/a8/5302df454773f5b6a9dc9c29d540b3195f8d10ea47773bf5ba2fe934c065/pyhmmer-0.7.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,742 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3c/74/ee460564fd2c0d9404e75649c4a5e476d962c37b018de89592f7960d1325/pyhmmer-0.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,742 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/36/e9/3d4b55e50c0815ec25f18e367982e588bc84033e6b8d5417671210214dc5/pyhmmer-0.7.0-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,743 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7d/64/775e2adae614da4f3481e035153058f95338913b433d82a2b295e672c753/pyhmmer-0.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,743 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e5/f9/c669b9adabe8996277e8a2bb6f08568509ea95cadfcb76121150d24b5f93/pyhmmer-0.7.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,744 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4f/54/985dcf1e22569b0904bd17b1f17e713dc94a7ab13b767c9f5d90f54daba1/pyhmmer-0.7.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,744 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/04/5277c738b8789802cf308662e7eb69535a5dc04d77088937cf749173c7e2/pyhmmer-0.7.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,745 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/51/03/a89c205cef3d63d140049a204977c5903adbcc2fffcd37f903a155fa5cc8/pyhmmer-0.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,747 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/47/eeb9204615d3acf39fe7ba1f5d0209d263c747eac405ea97e3ac6428c7a9/pyhmmer-0.7.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,747 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/c8/273b776dc57d54b80741592ca6aee62fb31982f4ead0bbc1510a3d89f95e/pyhmmer-0.7.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,748 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/1e/d8/f7b849eb87315778cc9a4295372bb3c5680616558edd48b4cb48a2cc1eb4/pyhmmer-0.7.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,751 Found link https://files.pythonhosted.org/packages/b4/aa/5f50a6780689a7372c851c8474fd5487b65d3df53f2a434bc5a99bc01cee/pyhmmer-0.7.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0 2023-02-17T11:45:04,752 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d9/93/13708d5362f3eeeae6bb9dc49dd033e78b2f36556581dff3a1a4c8944b9e/pyhmmer-0.7.1rc1-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,752 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/8d/5b/99159669ed9c78d16ad48eb9cfe9125b1de55b89c6896113db6d7db01281/pyhmmer-0.7.1rc1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,761 Found link https://files.pythonhosted.org/packages/ba/63/dbf48469522286800379be94c0aac9ca387e8b55dd2aa3631d25aa6b3670/pyhmmer-0.7.1rc1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.1rc1 2023-02-17T11:45:04,762 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4e/98/68ecc5a2aa3be261990a6011fcf7a5279895e8d04ec92802771dd216338b/pyhmmer-0.7.1-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,762 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/ae/0d/f38735e35b50b639b70c9a74b58ea25614a81b0a188d89b692139001bca0/pyhmmer-0.7.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,764 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/49/2363ee3fe7995921638cfa8f2df825168c47e0bd05f24374319e6bc8fa5e/pyhmmer-0.7.1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,765 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9f/b1/88afa91956eb78f5b19f3e44fabef47e0bc8bd2028c33c2f1740a2ddf406/pyhmmer-0.7.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,765 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/a9/acec031f4435e796440521c54f78f978cf91203615c29b07c7c9697840e7/pyhmmer-0.7.1-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,766 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/65/16/57009ec67d1b33dc1bddfd40c054d0fa2ed0970c357249b81ca9b2c80ac4/pyhmmer-0.7.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,766 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/65/61/e5d74affedd6c3ff3d2c17e8dd278921194411035ff093dbb17a8f3e4525/pyhmmer-0.7.1-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,767 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/93/f3/b3f6892b4bb54f3e74c255b7e977acb1b0149601197c40d0e388c481897c/pyhmmer-0.7.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,767 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f5/95/fb8f90d881b6253d0ca29b0fd714b2237733721aa108b20272801822d7dc/pyhmmer-0.7.1-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,768 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5e/77/bde94d470ac47242abc0754a02a21311339c2d4fc367631d91a940946ab1/pyhmmer-0.7.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,769 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/83/d3/462aea5aca8f8169bee7b77b380d0221bb8b452e07b54967b352fc9383bd/pyhmmer-0.7.1-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,769 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/a2/173fe1c90b803e6bfef9190ece6e479552be0f8afdb606e8639d543a35df/pyhmmer-0.7.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,770 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/45/64/476e25cf2eb37d76881022a6c42c8da9e06a93b1af51fc596ede5c6d68ce/pyhmmer-0.7.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,770 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/22/b0/978fe1e68b3bdcfb1662358de0b11229dcb0af7b04fec6efdabe0270389a/pyhmmer-0.7.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,771 Found link https://files.pythonhosted.org/packages/08/b9/653e773ff15145759bf2b8365c88e2f5aad1f30addbb1eddbde05bde02d9/pyhmmer-0.7.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.1 2023-02-17T11:45:04,772 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/3a/5cfa3d249b3b2d9a15efefe9fe084d3cdb02f42a986f923165ed04d0d9c3/pyhmmer-0.7.2-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,773 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ee/77/b3e1ed830c69047796d6368d0e4e56280e3962650af7a7aa90fd5fada9fe/pyhmmer-0.7.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,773 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d0/09/566484b8473a0216d855221e6b21b3ed6a7c8ec31bb08966cf5ce6dbe5b7/pyhmmer-0.7.2-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,774 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/8f/886997e0b208edbab94576eb4dbfcd56dcac054700f7246a15300098e210/pyhmmer-0.7.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,774 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ab/20/82e0a7504688cabb764417b4d141b0bb96f86632b8e499773e0dd391c9e3/pyhmmer-0.7.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,775 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8d/d5/e46bec7d9e8c5e242f7f6c3286f8af3bc2ae4bf9ea42d91e1f8d426b7561/pyhmmer-0.7.2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,775 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c8/dc/9356b86de2f272c8e0cc4f577c72d3ae4e86727e26491f80cd8dc8063a9a/pyhmmer-0.7.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,776 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8c/36/5fda154acd4dbde82c5f8ef5d4bb2532707c8b6b1138645673773ac139f8/pyhmmer-0.7.2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,776 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0e/e2/f830bf6972a294569182d6ea4026af2a902fd6cdd6f06dd0ed62bce231e5/pyhmmer-0.7.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,777 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/39/0098a2887eb2db25c5cd259dc8635beca3b1aebb18d56b95fad851592223/pyhmmer-0.7.2-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,777 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ad/cf/b678ce405273a64b4295f73a3357e988b2bce163862a9730a4b81650c626/pyhmmer-0.7.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,778 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/27/44ffc8ed4f96c4c5cc2fef672cfb66c9d84f1f26bc903c812b0b4fa4d673/pyhmmer-0.7.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,778 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/c6/c57c9f59c6d5c6e177aee95307f863bd058585dd0b0bfca4c34f7f13cd42/pyhmmer-0.7.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,779 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/71/db/4f93af5a00686347346a325ac84cae95fe6af81681c3489c83ac27629862/pyhmmer-0.7.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,779 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d1/f7/4bbda84916bb53d5427da8950d2c057db73fccdc33c632c941c524cdb53d/pyhmmer-0.7.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,780 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/03/cad0781ef73c4f4f52937840947c8d49cf2b2cbbd070c44b59e31d263a69/pyhmmer-0.7.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,780 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/15/65/80d52997be40674fd2c69b9828b058760e41b776b78af40a72902b86acd6/pyhmmer-0.7.2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-02-17T11:45:04,782 Found link https://files.pythonhosted.org/packages/df/a9/2657add69b3315c419cb618bd3d7fd5980a6b0f30599111e6ed64ca3cef4/pyhmmer-0.7.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.2 2023-02-17T11:45:04,783 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2023-02-17T11:45:04,784 Getting page https://www.piwheels.org/simple/pyhmmer/ 2023-02-17T11:45:04,786 Found index url https://www.piwheels.org/simple 2023-02-17T11:45:04,993 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2023-02-17T11:45:04,995 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2023-02-17T11:45:04,995 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2023-02-17T11:45:05,042 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2023-02-17T11:45:05,072 Collecting pyhmmer==0.7.2 2023-02-17T11:45:05,077 Created temporary directory: /tmp/pip-unpack-3zhzfu7s 2023-02-17T11:45:05,339 Downloading pyhmmer-0.7.2.tar.gz (11.0 MB) 2023-02-17T11:45:16,176 Added pyhmmer==0.7.2 from https://files.pythonhosted.org/packages/df/a9/2657add69b3315c419cb618bd3d7fd5980a6b0f30599111e6ed64ca3cef4/pyhmmer-0.7.2.tar.gz to build tracker '/tmp/pip-build-tracker-wdvuvqe4' 2023-02-17T11:45:16,186 Created temporary directory: /tmp/pip-build-env-ibzlsdze 2023-02-17T11:45:16,197 Installing build dependencies: started 2023-02-17T11:45:16,200 Running command pip subprocess to install build dependencies 2023-02-17T11:45:18,991 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-02-17T11:45:20,007 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-17T11:45:20,061 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-17T11:45:24,042 Collecting setuptools>=46.4 2023-02-17T11:45:24,097 Using cached setuptools-67.3.2-py3-none-any.whl (1.1 MB) 2023-02-17T11:45:27,370 Collecting cython~=0.29.16 2023-02-17T11:45:27,904 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.33-cp37-cp37m-linux_armv7l.whl (2.3 MB) 2023-02-17T11:45:35,224 Installing collected packages: setuptools, cython 2023-02-17T11:45:44,571 Creating /tmp/pip-build-env-ibzlsdze/overlay/bin 2023-02-17T11:45:44,575 changing mode of /tmp/pip-build-env-ibzlsdze/overlay/bin/cygdb to 755 2023-02-17T11:45:44,580 changing mode of /tmp/pip-build-env-ibzlsdze/overlay/bin/cython to 755 2023-02-17T11:45:44,584 changing mode of /tmp/pip-build-env-ibzlsdze/overlay/bin/cythonize to 755 2023-02-17T11:45:44,630 Successfully installed cython-0.29.33 setuptools-67.3.2 2023-02-17T11:45:44,669 [notice] A new release of pip available: 22.3 -> 23.0 2023-02-17T11:45:44,669 [notice] To update, run: python3 -m pip install --upgrade pip 2023-02-17T11:45:45,190 Installing build dependencies: finished with status 'done' 2023-02-17T11:45:45,201 Getting requirements to build wheel: started 2023-02-17T11:45:45,203 Running command Getting requirements to build wheel 2023-02-17T11:45:47,214 pyHMMER is not supported on CPU architecture: 'armv7l' 2023-02-17T11:45:47,342 Getting requirements to build wheel: finished with status 'done' 2023-02-17T11:45:47,379 Installing backend dependencies: started 2023-02-17T11:45:47,381 Running command pip subprocess to install backend dependencies 2023-02-17T11:45:50,136 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-02-17T11:45:51,143 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-17T11:45:51,196 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-17T11:45:52,065 Collecting wheel 2023-02-17T11:45:52,100 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2023-02-17T11:45:58,223 Installing collected packages: wheel 2023-02-17T11:45:58,507 Creating /tmp/pip-build-env-ibzlsdze/normal/bin 2023-02-17T11:45:58,512 changing mode of /tmp/pip-build-env-ibzlsdze/normal/bin/wheel to 755 2023-02-17T11:45:58,538 Successfully installed wheel-0.38.4 2023-02-17T11:45:58,574 [notice] A new release of pip available: 22.3 -> 23.0 2023-02-17T11:45:58,575 [notice] To update, run: python3 -m pip install --upgrade pip 2023-02-17T11:45:58,950 Installing backend dependencies: finished with status 'done' 2023-02-17T11:45:58,956 Created temporary directory: /tmp/pip-modern-metadata-b3jmuln_ 2023-02-17T11:45:58,962 Preparing metadata (pyproject.toml): started 2023-02-17T11:45:58,964 Running command Preparing metadata (pyproject.toml) 2023-02-17T11:46:01,011 running dist_info 2023-02-17T11:46:01,038 creating /tmp/pip-modern-metadata-b3jmuln_/pyhmmer.egg-info 2023-02-17T11:46:01,047 writing /tmp/pip-modern-metadata-b3jmuln_/pyhmmer.egg-info/PKG-INFO 2023-02-17T11:46:01,054 writing dependency_links to /tmp/pip-modern-metadata-b3jmuln_/pyhmmer.egg-info/dependency_links.txt 2023-02-17T11:46:01,059 writing requirements to /tmp/pip-modern-metadata-b3jmuln_/pyhmmer.egg-info/requires.txt 2023-02-17T11:46:01,061 writing top-level names to /tmp/pip-modern-metadata-b3jmuln_/pyhmmer.egg-info/top_level.txt 2023-02-17T11:46:01,064 writing manifest file '/tmp/pip-modern-metadata-b3jmuln_/pyhmmer.egg-info/SOURCES.txt' 2023-02-17T11:46:01,178 reading manifest file '/tmp/pip-modern-metadata-b3jmuln_/pyhmmer.egg-info/SOURCES.txt' 2023-02-17T11:46:01,182 reading manifest template 'MANIFEST.in' 2023-02-17T11:46:02,340 pyHMMER is not supported on CPU architecture: 'armv7l' 2023-02-17T11:46:02,340 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2023-02-17T11:46:02,344 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2023-02-17T11:46:02,347 no previously-included directories found matching 'vendor/easel/demotic' 2023-02-17T11:46:02,351 no previously-included directories found matching 'vendor/easel/documentation' 2023-02-17T11:46:02,354 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2023-02-17T11:46:02,358 no previously-included directories found matching 'vendor/easel/miniapps' 2023-02-17T11:46:02,361 no previously-included directories found matching 'vendor/easel/testsuite' 2023-02-17T11:46:02,364 no previously-included directories found matching 'vendor/hmmer/autobuild' 2023-02-17T11:46:02,368 no previously-included directories found matching 'vendor/hmmer/documentation' 2023-02-17T11:46:02,371 no previously-included directories found matching 'vendor/hmmer/contrib' 2023-02-17T11:46:02,374 no previously-included directories found matching 'vendor/hmmer/profmark' 2023-02-17T11:46:02,377 no previously-included directories found matching 'vendor/hmmer/testsuite' 2023-02-17T11:46:02,381 no previously-included directories found matching 'vendor/hmmer/test-speed' 2023-02-17T11:46:02,384 no previously-included directories found matching 'vendor/hmmer/tutorial' 2023-02-17T11:46:02,384 adding license file 'COPYING' 2023-02-17T11:46:02,456 writing manifest file '/tmp/pip-modern-metadata-b3jmuln_/pyhmmer.egg-info/SOURCES.txt' 2023-02-17T11:46:02,460 creating '/tmp/pip-modern-metadata-b3jmuln_/pyhmmer-0.7.2.dist-info' 2023-02-17T11:46:03,004 Preparing metadata (pyproject.toml): finished with status 'done' 2023-02-17T11:46:03,021 Source in /tmp/pip-wheel-aojicmux/pyhmmer_984d85e9b8844161ba57ac7675f7a62f has version 0.7.2, which satisfies requirement pyhmmer==0.7.2 from https://files.pythonhosted.org/packages/df/a9/2657add69b3315c419cb618bd3d7fd5980a6b0f30599111e6ed64ca3cef4/pyhmmer-0.7.2.tar.gz 2023-02-17T11:46:03,023 Removed pyhmmer==0.7.2 from https://files.pythonhosted.org/packages/df/a9/2657add69b3315c419cb618bd3d7fd5980a6b0f30599111e6ed64ca3cef4/pyhmmer-0.7.2.tar.gz from build tracker '/tmp/pip-build-tracker-wdvuvqe4' 2023-02-17T11:46:03,040 Created temporary directory: /tmp/pip-unpack-o1amvj75 2023-02-17T11:46:03,041 Building wheels for collected packages: pyhmmer 2023-02-17T11:46:03,051 Created temporary directory: /tmp/pip-wheel-41je9i2g 2023-02-17T11:46:03,052 Destination directory: /tmp/pip-wheel-41je9i2g 2023-02-17T11:46:03,056 Building wheel for pyhmmer (pyproject.toml): started 2023-02-17T11:46:03,058 Running command Building wheel for pyhmmer (pyproject.toml) 2023-02-17T11:46:05,254 running bdist_wheel 2023-02-17T11:46:05,290 running build 2023-02-17T11:46:05,290 running build_py 2023-02-17T11:46:05,308 creating build 2023-02-17T11:46:05,309 creating build/lib.linux-armv7l-cpython-37 2023-02-17T11:46:05,310 creating build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:05,312 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:05,320 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:05,323 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:05,328 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-02-17T11:46:05,330 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-02-17T11:46:05,333 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-02-17T11:46:05,337 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-02-17T11:46:05,340 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-02-17T11:46:05,344 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-02-17T11:46:05,352 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-02-17T11:46:05,354 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-02-17T11:46:05,357 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-02-17T11:46:05,362 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-02-17T11:46:05,365 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-02-17T11:46:05,370 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-02-17T11:46:05,373 copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-02-17T11:46:05,378 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-02-17T11:46:05,381 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-02-17T11:46:05,385 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-02-17T11:46:05,390 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-02-17T11:46:05,394 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-02-17T11:46:05,397 copying pyhmmer/tests/test_easel/test_gencode.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-02-17T11:46:05,401 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-02-17T11:46:05,405 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-02-17T11:46:05,411 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-02-17T11:46:05,412 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-02-17T11:46:05,416 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-02-17T11:46:05,419 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-02-17T11:46:05,423 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-02-17T11:46:05,427 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-02-17T11:46:05,430 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-02-17T11:46:05,434 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-02-17T11:46:05,439 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-02-17T11:46:05,443 copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-02-17T11:46:05,447 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-02-17T11:46:05,451 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-02-17T11:46:05,454 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-02-17T11:46:05,458 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-02-17T11:46:05,462 running egg_info 2023-02-17T11:46:05,494 writing pyhmmer.egg-info/PKG-INFO 2023-02-17T11:46:05,500 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2023-02-17T11:46:05,504 writing requirements to pyhmmer.egg-info/requires.txt 2023-02-17T11:46:05,506 writing top-level names to pyhmmer.egg-info/top_level.txt 2023-02-17T11:46:05,543 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2023-02-17T11:46:05,594 reading manifest template 'MANIFEST.in' 2023-02-17T11:46:06,735 pyHMMER is not supported on CPU architecture: 'armv7l' 2023-02-17T11:46:06,735 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2023-02-17T11:46:06,742 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2023-02-17T11:46:06,747 no previously-included directories found matching 'vendor/easel/demotic' 2023-02-17T11:46:06,752 no previously-included directories found matching 'vendor/easel/documentation' 2023-02-17T11:46:06,756 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2023-02-17T11:46:06,761 no previously-included directories found matching 'vendor/easel/miniapps' 2023-02-17T11:46:06,766 no previously-included directories found matching 'vendor/easel/testsuite' 2023-02-17T11:46:06,770 no previously-included directories found matching 'vendor/hmmer/autobuild' 2023-02-17T11:46:06,775 no previously-included directories found matching 'vendor/hmmer/documentation' 2023-02-17T11:46:06,780 no previously-included directories found matching 'vendor/hmmer/contrib' 2023-02-17T11:46:06,784 no previously-included directories found matching 'vendor/hmmer/profmark' 2023-02-17T11:46:06,789 no previously-included directories found matching 'vendor/hmmer/testsuite' 2023-02-17T11:46:06,794 no previously-included directories found matching 'vendor/hmmer/test-speed' 2023-02-17T11:46:06,798 no previously-included directories found matching 'vendor/hmmer/tutorial' 2023-02-17T11:46:06,799 adding license file 'COPYING' 2023-02-17T11:46:06,898 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2023-02-17T11:46:06,926 /tmp/pip-build-env-ibzlsdze/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.fileobj' as data is deprecated, please list it in `packages`. 2023-02-17T11:46:06,927 !! 2023-02-17T11:46:06,927 ############################ 2023-02-17T11:46:06,928 # Package would be ignored # 2023-02-17T11:46:06,928 ############################ 2023-02-17T11:46:06,928 Python recognizes 'pyhmmer.fileobj' as an importable package, 2023-02-17T11:46:06,929 but it is not listed in the `packages` configuration of setuptools. 2023-02-17T11:46:06,929 'pyhmmer.fileobj' has been automatically added to the distribution only 2023-02-17T11:46:06,930 because it may contain data files, but this behavior is likely to change 2023-02-17T11:46:06,930 in future versions of setuptools (and therefore is considered deprecated). 2023-02-17T11:46:06,931 Please make sure that 'pyhmmer.fileobj' is included as a package by using 2023-02-17T11:46:06,931 the `packages` configuration field or the proper discovery methods 2023-02-17T11:46:06,931 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-17T11:46:06,931 instead of `find_packages(...)`/`find:`). 2023-02-17T11:46:06,932 You can read more about "package discovery" and "data files" on setuptools 2023-02-17T11:46:06,932 documentation page. 2023-02-17T11:46:06,933 !! 2023-02-17T11:46:06,934 check.warn(importable) 2023-02-17T11:46:06,934 /tmp/pip-build-env-ibzlsdze/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.reexports' as data is deprecated, please list it in `packages`. 2023-02-17T11:46:06,934 !! 2023-02-17T11:46:06,935 ############################ 2023-02-17T11:46:06,935 # Package would be ignored # 2023-02-17T11:46:06,936 ############################ 2023-02-17T11:46:06,936 Python recognizes 'pyhmmer.reexports' as an importable package, 2023-02-17T11:46:06,936 but it is not listed in the `packages` configuration of setuptools. 2023-02-17T11:46:06,937 'pyhmmer.reexports' has been automatically added to the distribution only 2023-02-17T11:46:06,937 because it may contain data files, but this behavior is likely to change 2023-02-17T11:46:06,937 in future versions of setuptools (and therefore is considered deprecated). 2023-02-17T11:46:06,938 Please make sure that 'pyhmmer.reexports' is included as a package by using 2023-02-17T11:46:06,938 the `packages` configuration field or the proper discovery methods 2023-02-17T11:46:06,939 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-17T11:46:06,939 instead of `find_packages(...)`/`find:`). 2023-02-17T11:46:06,939 You can read more about "package discovery" and "data files" on setuptools 2023-02-17T11:46:06,940 documentation page. 2023-02-17T11:46:06,941 !! 2023-02-17T11:46:06,941 check.warn(importable) 2023-02-17T11:46:06,941 /tmp/pip-build-env-ibzlsdze/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data' as data is deprecated, please list it in `packages`. 2023-02-17T11:46:06,942 !! 2023-02-17T11:46:06,943 ############################ 2023-02-17T11:46:06,943 # Package would be ignored # 2023-02-17T11:46:06,943 ############################ 2023-02-17T11:46:06,943 Python recognizes 'pyhmmer.tests.data' as an importable package, 2023-02-17T11:46:06,944 but it is not listed in the `packages` configuration of setuptools. 2023-02-17T11:46:06,944 'pyhmmer.tests.data' has been automatically added to the distribution only 2023-02-17T11:46:06,945 because it may contain data files, but this behavior is likely to change 2023-02-17T11:46:06,945 in future versions of setuptools (and therefore is considered deprecated). 2023-02-17T11:46:06,945 Please make sure that 'pyhmmer.tests.data' is included as a package by using 2023-02-17T11:46:06,946 the `packages` configuration field or the proper discovery methods 2023-02-17T11:46:06,946 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-17T11:46:06,946 instead of `find_packages(...)`/`find:`). 2023-02-17T11:46:06,947 You can read more about "package discovery" and "data files" on setuptools 2023-02-17T11:46:06,947 documentation page. 2023-02-17T11:46:06,948 !! 2023-02-17T11:46:06,949 check.warn(importable) 2023-02-17T11:46:06,949 /tmp/pip-build-env-ibzlsdze/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms' as data is deprecated, please list it in `packages`. 2023-02-17T11:46:06,949 !! 2023-02-17T11:46:06,950 ############################ 2023-02-17T11:46:06,950 # Package would be ignored # 2023-02-17T11:46:06,950 ############################ 2023-02-17T11:46:06,951 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package, 2023-02-17T11:46:06,951 but it is not listed in the `packages` configuration of setuptools. 2023-02-17T11:46:06,952 'pyhmmer.tests.data.hmms' has been automatically added to the distribution only 2023-02-17T11:46:06,952 because it may contain data files, but this behavior is likely to change 2023-02-17T11:46:06,952 in future versions of setuptools (and therefore is considered deprecated). 2023-02-17T11:46:06,953 Please make sure that 'pyhmmer.tests.data.hmms' is included as a package by using 2023-02-17T11:46:06,953 the `packages` configuration field or the proper discovery methods 2023-02-17T11:46:06,953 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-17T11:46:06,954 instead of `find_packages(...)`/`find:`). 2023-02-17T11:46:06,954 You can read more about "package discovery" and "data files" on setuptools 2023-02-17T11:46:06,955 documentation page. 2023-02-17T11:46:06,955 !! 2023-02-17T11:46:06,956 check.warn(importable) 2023-02-17T11:46:06,956 /tmp/pip-build-env-ibzlsdze/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.bin' as data is deprecated, please list it in `packages`. 2023-02-17T11:46:06,957 !! 2023-02-17T11:46:06,957 ############################ 2023-02-17T11:46:06,958 # Package would be ignored # 2023-02-17T11:46:06,958 ############################ 2023-02-17T11:46:06,958 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package, 2023-02-17T11:46:06,959 but it is not listed in the `packages` configuration of setuptools. 2023-02-17T11:46:06,959 'pyhmmer.tests.data.hmms.bin' has been automatically added to the distribution only 2023-02-17T11:46:06,959 because it may contain data files, but this behavior is likely to change 2023-02-17T11:46:06,960 in future versions of setuptools (and therefore is considered deprecated). 2023-02-17T11:46:06,960 Please make sure that 'pyhmmer.tests.data.hmms.bin' is included as a package by using 2023-02-17T11:46:06,961 the `packages` configuration field or the proper discovery methods 2023-02-17T11:46:06,961 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-17T11:46:06,961 instead of `find_packages(...)`/`find:`). 2023-02-17T11:46:06,962 You can read more about "package discovery" and "data files" on setuptools 2023-02-17T11:46:06,962 documentation page. 2023-02-17T11:46:06,963 !! 2023-02-17T11:46:06,963 check.warn(importable) 2023-02-17T11:46:06,964 /tmp/pip-build-env-ibzlsdze/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.db' as data is deprecated, please list it in `packages`. 2023-02-17T11:46:06,964 !! 2023-02-17T11:46:06,965 ############################ 2023-02-17T11:46:06,965 # Package would be ignored # 2023-02-17T11:46:06,965 ############################ 2023-02-17T11:46:06,966 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package, 2023-02-17T11:46:06,966 but it is not listed in the `packages` configuration of setuptools. 2023-02-17T11:46:06,966 'pyhmmer.tests.data.hmms.db' has been automatically added to the distribution only 2023-02-17T11:46:06,967 because it may contain data files, but this behavior is likely to change 2023-02-17T11:46:06,967 in future versions of setuptools (and therefore is considered deprecated). 2023-02-17T11:46:06,968 Please make sure that 'pyhmmer.tests.data.hmms.db' is included as a package by using 2023-02-17T11:46:06,968 the `packages` configuration field or the proper discovery methods 2023-02-17T11:46:06,968 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-17T11:46:06,968 instead of `find_packages(...)`/`find:`). 2023-02-17T11:46:06,969 You can read more about "package discovery" and "data files" on setuptools 2023-02-17T11:46:06,969 documentation page. 2023-02-17T11:46:06,970 !! 2023-02-17T11:46:06,971 check.warn(importable) 2023-02-17T11:46:06,971 /tmp/pip-build-env-ibzlsdze/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt' as data is deprecated, please list it in `packages`. 2023-02-17T11:46:06,971 !! 2023-02-17T11:46:06,972 ############################ 2023-02-17T11:46:06,972 # Package would be ignored # 2023-02-17T11:46:06,973 ############################ 2023-02-17T11:46:06,973 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package, 2023-02-17T11:46:06,973 but it is not listed in the `packages` configuration of setuptools. 2023-02-17T11:46:06,974 'pyhmmer.tests.data.hmms.txt' has been automatically added to the distribution only 2023-02-17T11:46:06,974 because it may contain data files, but this behavior is likely to change 2023-02-17T11:46:06,974 in future versions of setuptools (and therefore is considered deprecated). 2023-02-17T11:46:06,975 Please make sure that 'pyhmmer.tests.data.hmms.txt' is included as a package by using 2023-02-17T11:46:06,975 the `packages` configuration field or the proper discovery methods 2023-02-17T11:46:06,975 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-17T11:46:06,976 instead of `find_packages(...)`/`find:`). 2023-02-17T11:46:06,976 You can read more about "package discovery" and "data files" on setuptools 2023-02-17T11:46:06,977 documentation page. 2023-02-17T11:46:06,977 !! 2023-02-17T11:46:06,978 check.warn(importable) 2023-02-17T11:46:06,978 /tmp/pip-build-env-ibzlsdze/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt2' as data is deprecated, please list it in `packages`. 2023-02-17T11:46:06,979 !! 2023-02-17T11:46:06,979 ############################ 2023-02-17T11:46:06,980 # Package would be ignored # 2023-02-17T11:46:06,980 ############################ 2023-02-17T11:46:06,980 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package, 2023-02-17T11:46:06,981 but it is not listed in the `packages` configuration of setuptools. 2023-02-17T11:46:06,981 'pyhmmer.tests.data.hmms.txt2' has been automatically added to the distribution only 2023-02-17T11:46:06,981 because it may contain data files, but this behavior is likely to change 2023-02-17T11:46:06,982 in future versions of setuptools (and therefore is considered deprecated). 2023-02-17T11:46:06,982 Please make sure that 'pyhmmer.tests.data.hmms.txt2' is included as a package by using 2023-02-17T11:46:06,982 the `packages` configuration field or the proper discovery methods 2023-02-17T11:46:06,983 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-17T11:46:06,983 instead of `find_packages(...)`/`find:`). 2023-02-17T11:46:06,984 You can read more about "package discovery" and "data files" on setuptools 2023-02-17T11:46:06,984 documentation page. 2023-02-17T11:46:06,985 !! 2023-02-17T11:46:06,986 check.warn(importable) 2023-02-17T11:46:07,001 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:07,006 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:07,010 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:07,016 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:07,021 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:07,027 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:07,044 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:07,049 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:07,053 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:07,057 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:07,062 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:07,069 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:07,090 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-02-17T11:46:07,094 creating build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-02-17T11:46:07,095 copying pyhmmer/fileobj/bsd.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-02-17T11:46:07,100 copying pyhmmer/fileobj/linux.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-02-17T11:46:07,105 creating build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-02-17T11:46:07,107 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-02-17T11:46:07,111 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-02-17T11:46:07,115 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-02-17T11:46:07,119 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-02-17T11:46:07,123 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-02-17T11:46:07,127 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-02-17T11:46:07,131 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-02-17T11:46:07,135 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-02-17T11:46:07,139 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2023-02-17T11:46:07,141 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2023-02-17T11:46:07,145 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2023-02-17T11:46:07,147 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2023-02-17T11:46:07,152 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-02-17T11:46:07,153 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-02-17T11:46:07,162 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-02-17T11:46:07,170 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-02-17T11:46:07,177 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-02-17T11:46:07,303 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,305 copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,314 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,320 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,324 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,331 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,338 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,351 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,357 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,361 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,370 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,379 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,389 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,395 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,399 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,406 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,414 copying pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,846 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,907 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:07,911 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:08,034 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-02-17T11:46:08,148 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-02-17T11:46:08,150 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-02-17T11:46:08,164 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-02-17T11:46:08,177 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-02-17T11:46:08,191 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-02-17T11:46:08,201 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-02-17T11:46:08,216 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-02-17T11:46:08,237 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-02-17T11:46:08,450 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-02-17T11:46:08,452 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-02-17T11:46:08,460 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-02-17T11:46:08,472 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-02-17T11:46:08,482 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-02-17T11:46:08,718 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-02-17T11:46:08,720 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-02-17T11:46:08,724 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-02-17T11:46:08,729 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-02-17T11:46:08,734 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-02-17T11:46:08,736 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-02-17T11:46:08,741 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-02-17T11:46:08,747 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-02-17T11:46:08,753 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-02-17T11:46:08,757 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-02-17T11:46:08,761 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-02-17T11:46:08,815 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-02-17T11:46:08,831 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-02-17T11:46:09,031 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-02-17T11:46:09,042 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-02-17T11:46:09,047 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-02-17T11:46:09,053 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-02-17T11:46:09,056 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-02-17T11:46:09,058 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-02-17T11:46:09,064 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-02-17T11:46:09,069 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-02-17T11:46:09,073 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-02-17T11:46:09,077 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-02-17T11:46:09,083 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-02-17T11:46:09,087 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-02-17T11:46:09,094 copying pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-02-17T11:46:09,098 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-02-17T11:46:09,113 running build_clib 2023-02-17T11:46:09,130 creating build/temp.linux-armv7l-cpython-37 2023-02-17T11:46:09,132 generating "divsufsort.h" for divsufsort library 2023-02-17T11:46:09,133 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-37/divsufsort.h 2023-02-17T11:46:09,137 generating "esl_config.h" for easel library 2023-02-17T11:46:09,140 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdio_h.c -o build/temp.linux-armv7l-cpython-37/have_stdio_h.o 2023-02-17T11:46:09,355 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdlib_h.c -o build/temp.linux-armv7l-cpython-37/have_stdlib_h.o 2023-02-17T11:46:09,581 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_string_h.c -o build/temp.linux-armv7l-cpython-37/have_string_h.o 2023-02-17T11:46:09,779 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-37/have_inttypes_h.o 2023-02-17T11:46:09,963 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdint_h.c -o build/temp.linux-armv7l-cpython-37/have_stdint_h.o 2023-02-17T11:46:10,140 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strings_h.c -o build/temp.linux-armv7l-cpython-37/have_strings_h.o 2023-02-17T11:46:10,311 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_stat_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_stat_h.o 2023-02-17T11:46:10,492 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_types_h.o 2023-02-17T11:46:10,688 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_unistd_h.c -o build/temp.linux-armv7l-cpython-37/have_unistd_h.o 2023-02-17T11:46:10,883 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_endian_h.c -o build/temp.linux-armv7l-cpython-37/have_endian_h.o 2023-02-17T11:46:11,058 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-37/have_netinet_in_h.o 2023-02-17T11:46:11,323 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_param_h.o 2023-02-17T11:46:11,577 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.o 2023-02-17T11:46:11,787 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_aligned_alloc.c -o build/temp.linux-armv7l-cpython-37/have_aligned_alloc.o -Wno-all 2023-02-17T11:46:12,034 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_aligned_alloc.o -o build/temp.linux-armv7l-cpython-37/have_aligned_alloc.bin 2023-02-17T11:46:12,664 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_erfc.c -o build/temp.linux-armv7l-cpython-37/have_erfc.o -Wno-all 2023-02-17T11:46:12,926 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_erfc.o -o build/temp.linux-armv7l-cpython-37/have_erfc.bin 2023-02-17T11:46:13,547 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getpid.c -o build/temp.linux-armv7l-cpython-37/have_getpid.o -Wno-all 2023-02-17T11:46:13,766 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getpid.o -o build/temp.linux-armv7l-cpython-37/have_getpid.bin 2023-02-17T11:46:14,391 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have__mm_malloc.c -o build/temp.linux-armv7l-cpython-37/have__mm_malloc.o -Wno-all 2023-02-17T11:46:14,630 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have__mm_malloc.o -o build/temp.linux-armv7l-cpython-37/have__mm_malloc.bin 2023-02-17T11:46:15,245 /usr/bin/ld: /tmp/ccf9v3J4.ltrans0.ltrans.o: in function `main': 2023-02-17T11:46:15,246 :(.text.startup+0xc): undefined reference to `_mm_malloc' 2023-02-17T11:46:15,246 collect2: error: ld returned 1 exit status 2023-02-17T11:46:15,257 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_popen.c -o build/temp.linux-armv7l-cpython-37/have_popen.o -Wno-all 2023-02-17T11:46:15,487 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_popen.o -o build/temp.linux-armv7l-cpython-37/have_popen.bin 2023-02-17T11:46:16,106 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_posix_memalign.c -o build/temp.linux-armv7l-cpython-37/have_posix_memalign.o -Wno-all 2023-02-17T11:46:16,363 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_posix_memalign.o -o build/temp.linux-armv7l-cpython-37/have_posix_memalign.bin 2023-02-17T11:46:16,993 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -Wno-all 2023-02-17T11:46:17,190 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.bin 2023-02-17T11:46:17,805 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strsep.c -o build/temp.linux-armv7l-cpython-37/have_strsep.o -Wno-all 2023-02-17T11:46:18,013 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strsep.o -o build/temp.linux-armv7l-cpython-37/have_strsep.bin 2023-02-17T11:46:18,634 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysconf.c -o build/temp.linux-armv7l-cpython-37/have_sysconf.o -Wno-all 2023-02-17T11:46:18,856 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysconf.o -o build/temp.linux-armv7l-cpython-37/have_sysconf.bin 2023-02-17T11:46:19,487 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysctl.c -o build/temp.linux-armv7l-cpython-37/have_sysctl.o -Wno-all 2023-02-17T11:46:19,738 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysctl.o -o build/temp.linux-armv7l-cpython-37/have_sysctl.bin 2023-02-17T11:46:20,371 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_times.c -o build/temp.linux-armv7l-cpython-37/have_times.o -Wno-all 2023-02-17T11:46:20,576 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_times.o -o build/temp.linux-armv7l-cpython-37/have_times.bin 2023-02-17T11:46:21,211 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_fseeko.c -o build/temp.linux-armv7l-cpython-37/have_fseeko.o -Wno-all 2023-02-17T11:46:21,444 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_fseeko.o -o build/temp.linux-armv7l-cpython-37/have_fseeko.bin 2023-02-17T11:46:22,071 generating "p7_config.h" for hmmer library 2023-02-17T11:46:22,075 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_endian_h.c -o build/temp.linux-armv7l-cpython-37/have_endian_h.o 2023-02-17T11:46:22,252 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-37/have_inttypes_h.o 2023-02-17T11:46:22,436 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdint_h.c -o build/temp.linux-armv7l-cpython-37/have_stdint_h.o 2023-02-17T11:46:22,615 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_unistd_h.c -o build/temp.linux-armv7l-cpython-37/have_unistd_h.o 2023-02-17T11:46:22,808 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_types_h.o 2023-02-17T11:46:23,005 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-37/have_netinet_in_h.o 2023-02-17T11:46:23,238 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_param_h.o 2023-02-17T11:46:23,482 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.o 2023-02-17T11:46:23,665 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_mkstemp.c -o build/temp.linux-armv7l-cpython-37/have_mkstemp.o -Wno-all 2023-02-17T11:46:23,912 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_mkstemp.o -o build/temp.linux-armv7l-cpython-37/have_mkstemp.bin 2023-02-17T11:46:24,534 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_popen.c -o build/temp.linux-armv7l-cpython-37/have_popen.o -Wno-all 2023-02-17T11:46:24,764 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_popen.o -o build/temp.linux-armv7l-cpython-37/have_popen.bin 2023-02-17T11:46:25,388 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_putenv.c -o build/temp.linux-armv7l-cpython-37/have_putenv.o -Wno-all 2023-02-17T11:46:25,635 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_putenv.o -o build/temp.linux-armv7l-cpython-37/have_putenv.bin 2023-02-17T11:46:26,261 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -Wno-all 2023-02-17T11:46:26,459 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.bin 2023-02-17T11:46:27,088 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strsep.c -o build/temp.linux-armv7l-cpython-37/have_strsep.o -Wno-all 2023-02-17T11:46:27,302 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strsep.o -o build/temp.linux-armv7l-cpython-37/have_strsep.bin 2023-02-17T11:46:27,925 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_times.c -o build/temp.linux-armv7l-cpython-37/have_times.o -Wno-all 2023-02-17T11:46:28,130 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_times.o -o build/temp.linux-armv7l-cpython-37/have_times.bin 2023-02-17T11:46:28,755 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getpid.c -o build/temp.linux-armv7l-cpython-37/have_getpid.o -Wno-all 2023-02-17T11:46:28,977 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getpid.o -o build/temp.linux-armv7l-cpython-37/have_getpid.bin 2023-02-17T11:46:29,603 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysctl.c -o build/temp.linux-armv7l-cpython-37/have_sysctl.o -Wno-all 2023-02-17T11:46:29,853 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysctl.o -o build/temp.linux-armv7l-cpython-37/have_sysctl.bin 2023-02-17T11:46:30,483 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysconf.c -o build/temp.linux-armv7l-cpython-37/have_sysconf.o -Wno-all 2023-02-17T11:46:30,706 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysconf.o -o build/temp.linux-armv7l-cpython-37/have_sysconf.bin 2023-02-17T11:46:31,331 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getcwd.c -o build/temp.linux-armv7l-cpython-37/have_getcwd.o -Wno-all 2023-02-17T11:46:31,554 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getcwd.o -o build/temp.linux-armv7l-cpython-37/have_getcwd.bin 2023-02-17T11:46:32,187 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_chmod.c -o build/temp.linux-armv7l-cpython-37/have_chmod.o -Wno-all 2023-02-17T11:46:32,396 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_chmod.o -o build/temp.linux-armv7l-cpython-37/have_chmod.bin 2023-02-17T11:46:33,017 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stat.c -o build/temp.linux-armv7l-cpython-37/have_stat.o -Wno-all 2023-02-17T11:46:33,239 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_stat.o -o build/temp.linux-armv7l-cpython-37/have_stat.bin 2023-02-17T11:46:33,869 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_fstat.c -o build/temp.linux-armv7l-cpython-37/have_fstat.o -Wno-all 2023-02-17T11:46:34,089 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_fstat.o -o build/temp.linux-armv7l-cpython-37/have_fstat.bin 2023-02-17T11:46:34,722 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_erfc.c -o build/temp.linux-armv7l-cpython-37/have_erfc.o -Wno-all 2023-02-17T11:46:34,981 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_erfc.o -o build/temp.linux-armv7l-cpython-37/have_erfc.bin 2023-02-17T11:46:35,605 generating build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2023-02-17T11:46:35,631 generating build/temp.linux-armv7l-cpython-37/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2023-02-17T11:46:35,657 generating build/temp.linux-armv7l-cpython-37/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2023-02-17T11:46:35,693 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2023-02-17T11:46:35,694 creating build/temp.linux-armv7l-cpython-37/vendor 2023-02-17T11:46:35,695 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer 2023-02-17T11:46:35,697 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort 2023-02-17T11:46:35,706 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2023-02-17T11:46:44,620 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libdivsufsort.a build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2023-02-17T11:46:44,679 generating build/temp.linux-armv7l-cpython-37/libeasel.a from vendor/easel/esl_scorematrix.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_random.c, vendor/easel/esl_buffer.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_mpi.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_cpu.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_neon.c, vendor/easel/esl_msafile.c, vendor/easel/esl_recorder.c, vendor/easel/esl_distance.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_histogram.c, vendor/easel/esl_alloc.c, vendor/easel/esl_getopts.c, vendor/easel/interface_gsl.c, vendor/easel/esl_stack.c, vendor/easel/esl_ssi.c, vendor/easel/esl_sse.c, vendor/easel/esl_avx512.c, vendor/easel/esl_weibull.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_avx.c, vendor/easel/esl_huffman.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_vmx.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_sq.c, vendor/easel/esl_hmm.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_mem.c, vendor/easel/esl_wuss.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_gev.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_regexp.c, vendor/easel/interface_lapack.c, vendor/easel/easel.c, vendor/easel/esl_stats.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_arr3.c, vendor/easel/esl_cluster.c, vendor/easel/esl_msa.c, vendor/easel/esl_swat.c, vendor/easel/esl_heap.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_arr2.c, vendor/easel/esl_exponential.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_normal.c, vendor/easel/esl_gamma.c, vendor/easel/esl_tree.c, vendor/easel/esl_red_black.c, vendor/easel/esl_json.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_gencode.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_paml.c, vendor/easel/esl_threads.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_graph.c, vendor/easel/esl_sqio.c, vendor/easel/esl_composition.c, vendor/easel/esl_varint.c, vendor/easel/esl_rand64.c, vendor/easel/esl_stopwatch.c, build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2023-02-17T11:46:44,687 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2023-02-17T11:46:44,688 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2023-02-17T11:46:44,689 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2023-02-17T11:46:44,690 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2023-02-17T11:46:44,690 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2023-02-17T11:46:44,692 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2023-02-17T11:46:44,694 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o 2023-02-17T11:46:44,696 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o 2023-02-17T11:46:44,697 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o 2023-02-17T11:46:44,716 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o 2023-02-17T11:46:44,958 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2023-02-17T11:46:44,960 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o 2023-02-17T11:46:46,328 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2023-02-17T11:46:46,329 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o 2023-02-17T11:46:46,390 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2023-02-17T11:46:46,391 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-02-17T11:46:46,391 for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2023-02-17T11:46:46,392 ^ 2023-02-17T11:46:46,392 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2023-02-17T11:46:46,393 char *p; 2023-02-17T11:46:46,393 ^ 2023-02-17T11:46:46,700 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2023-02-17T11:46:46,701 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:46,702 if (rank > h->n) 2023-02-17T11:46:46,703 ^ 2023-02-17T11:46:47,520 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2023-02-17T11:46:47,521 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o 2023-02-17T11:46:48,774 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2023-02-17T11:46:48,775 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o 2023-02-17T11:46:48,987 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2023-02-17T11:46:48,989 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o 2023-02-17T11:46:49,011 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2023-02-17T11:46:49,014 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o 2023-02-17T11:46:49,872 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2023-02-17T11:46:49,874 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o 2023-02-17T11:46:49,934 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2023-02-17T11:46:49,936 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o 2023-02-17T11:46:50,381 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2023-02-17T11:46:50,383 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o 2023-02-17T11:46:50,800 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2023-02-17T11:46:50,802 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o 2023-02-17T11:46:50,804 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2023-02-17T11:46:50,804 vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:46:50,805 if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2023-02-17T11:46:50,805 ^~ 2023-02-17T11:46:51,217 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2023-02-17T11:46:51,219 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o 2023-02-17T11:46:51,675 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2023-02-17T11:46:51,677 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o 2023-02-17T11:46:51,866 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2023-02-17T11:46:51,867 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o 2023-02-17T11:46:52,447 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2023-02-17T11:46:52,449 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o 2023-02-17T11:46:52,550 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2023-02-17T11:46:52,552 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o 2023-02-17T11:46:52,862 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2023-02-17T11:46:52,862 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-02-17T11:46:52,863 for (i = 0; i < a; i++) 2023-02-17T11:46:52,863 ^ 2023-02-17T11:46:53,000 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2023-02-17T11:46:53,002 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o 2023-02-17T11:46:53,341 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2023-02-17T11:46:53,343 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:46:53,343 if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2023-02-17T11:46:53,344 ^~ 2023-02-17T11:46:54,399 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2023-02-17T11:46:54,401 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o 2023-02-17T11:46:54,503 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2023-02-17T11:46:54,505 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o 2023-02-17T11:46:54,701 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2023-02-17T11:46:54,703 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o 2023-02-17T11:46:55,861 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2023-02-17T11:46:55,863 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o 2023-02-17T11:46:56,208 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2023-02-17T11:46:56,209 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,210 if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2023-02-17T11:46:56,210 ^~ 2023-02-17T11:46:56,233 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2023-02-17T11:46:56,234 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,235 if ((n+1) > ns->flen) ns->flen = n+1; 2023-02-17T11:46:56,235 ^ 2023-02-17T11:46:56,243 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2023-02-17T11:46:56,243 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,244 if (n > ns->plen) ns->plen = n; 2023-02-17T11:46:56,245 ^ 2023-02-17T11:46:56,247 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,248 for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2023-02-17T11:46:56,248 ^ 2023-02-17T11:46:56,249 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2023-02-17T11:46:56,250 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,251 if (n > ns->slen) ns->slen = n; 2023-02-17T11:46:56,251 ^ 2023-02-17T11:46:56,254 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,255 for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2023-02-17T11:46:56,255 ^ 2023-02-17T11:46:56,266 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2023-02-17T11:46:56,267 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,268 for (i = 0; i < ns->nprimary; i++) 2023-02-17T11:46:56,268 ^ 2023-02-17T11:46:56,270 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,271 for (i = 0; i < ns->nprimary; i++) 2023-02-17T11:46:56,271 ^ 2023-02-17T11:46:56,273 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,273 for (i = 0; i < ns->nsecondary; i++) 2023-02-17T11:46:56,274 ^ 2023-02-17T11:46:56,276 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,276 for (i = 0; i < ns->nsecondary; i++) 2023-02-17T11:46:56,277 ^ 2023-02-17T11:46:56,284 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2023-02-17T11:46:56,285 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,285 for (i = 0; i < ns->nprimary; i++) 2023-02-17T11:46:56,285 ^ 2023-02-17T11:46:56,286 vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,287 for (i = 0; i < ns->nsecondary; i++) 2023-02-17T11:46:56,287 ^ 2023-02-17T11:46:56,297 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2023-02-17T11:46:56,298 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,299 for (i = 0; i < ns->nprimary; i++) { 2023-02-17T11:46:56,299 ^ 2023-02-17T11:46:56,300 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,301 for (i = 0; i < ns->nsecondary; i++) 2023-02-17T11:46:56,301 ^ 2023-02-17T11:46:56,302 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,303 for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2023-02-17T11:46:56,303 ^ 2023-02-17T11:46:56,304 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,304 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2023-02-17T11:46:56,305 ^ 2023-02-17T11:46:56,305 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:56,306 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2023-02-17T11:46:56,306 ^ 2023-02-17T11:46:56,847 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2023-02-17T11:46:56,849 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o 2023-02-17T11:46:56,932 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2023-02-17T11:46:56,934 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o 2023-02-17T11:46:57,977 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2023-02-17T11:46:57,978 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o 2023-02-17T11:46:58,702 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2023-02-17T11:46:58,703 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o 2023-02-17T11:46:59,392 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2023-02-17T11:46:59,394 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o 2023-02-17T11:46:59,602 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2023-02-17T11:46:59,605 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o 2023-02-17T11:46:59,825 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2023-02-17T11:46:59,827 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o 2023-02-17T11:46:59,898 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2023-02-17T11:46:59,899 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:46:59,899 if (alphatype != dd->abc_r->type) 2023-02-17T11:46:59,900 ^~ 2023-02-17T11:46:59,921 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2023-02-17T11:46:59,922 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:46:59,923 if (sq->n > max_seqlen) max_seqlen = sq->n; 2023-02-17T11:46:59,923 ^ 2023-02-17T11:46:59,925 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:46:59,925 n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2023-02-17T11:46:59,926 ^ 2023-02-17T11:46:59,927 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:46:59,928 n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2023-02-17T11:46:59,929 ^ 2023-02-17T11:46:59,930 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:46:59,931 n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2023-02-17T11:46:59,932 ^ 2023-02-17T11:46:59,940 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:46:59,940 if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2023-02-17T11:46:59,941 ^~ 2023-02-17T11:46:59,942 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:46:59,943 if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2023-02-17T11:46:59,944 ^~ 2023-02-17T11:46:59,945 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:46:59,946 if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2023-02-17T11:46:59,947 ^~ 2023-02-17T11:46:59,949 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:46:59,950 if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2023-02-17T11:46:59,950 ^~ 2023-02-17T11:47:00,032 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2023-02-17T11:47:00,034 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-02-17T11:47:00,034 } 2023-02-17T11:47:00,035 ^ 2023-02-17T11:47:00,052 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2023-02-17T11:47:00,056 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-02-17T11:47:00,059 } 2023-02-17T11:47:00,061 ^ 2023-02-17T11:47:00,384 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2023-02-17T11:47:00,386 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o 2023-02-17T11:47:00,592 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2023-02-17T11:47:00,594 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o 2023-02-17T11:47:00,860 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2023-02-17T11:47:00,862 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o 2023-02-17T11:47:00,887 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2023-02-17T11:47:00,889 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o 2023-02-17T11:47:01,569 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2023-02-17T11:47:01,570 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-02-17T11:47:01,570 return status; 2023-02-17T11:47:01,571 ^~~~~~ 2023-02-17T11:47:02,037 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2023-02-17T11:47:02,039 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o 2023-02-17T11:47:03,178 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2023-02-17T11:47:03,180 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o 2023-02-17T11:47:03,517 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2023-02-17T11:47:03,518 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2023-02-17T11:47:03,519 for (h = 0; h < kh->hashsize; h++) 2023-02-17T11:47:03,519 ^ 2023-02-17T11:47:03,520 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2023-02-17T11:47:03,521 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:03,521 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-02-17T11:47:03,522 ^ 2023-02-17T11:47:03,523 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2023-02-17T11:47:03,523 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2023-02-17T11:47:03,524 for (h = 0; h < kh->hashsize; h++) 2023-02-17T11:47:03,524 ^ 2023-02-17T11:47:03,528 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2023-02-17T11:47:03,529 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:03,530 if (kh->nkeys > 3*kh->hashsize) 2023-02-17T11:47:03,530 ^ 2023-02-17T11:47:03,533 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2023-02-17T11:47:03,534 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:03,534 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-02-17T11:47:03,535 ^ 2023-02-17T11:47:03,539 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2023-02-17T11:47:03,540 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:03,541 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-02-17T11:47:03,541 ^ 2023-02-17T11:47:03,969 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2023-02-17T11:47:03,971 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o 2023-02-17T11:47:04,436 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2023-02-17T11:47:04,437 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o 2023-02-17T11:47:04,469 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2023-02-17T11:47:04,470 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2023-02-17T11:47:04,471 for (pos = 0; pos < sq->n; pos++) 2023-02-17T11:47:04,471 ^ 2023-02-17T11:47:04,472 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2023-02-17T11:47:04,473 for (pos = 1; pos <= sq->n; pos++) 2023-02-17T11:47:04,473 ^~ 2023-02-17T11:47:04,674 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2023-02-17T11:47:04,676 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o 2023-02-17T11:47:04,917 In file included from vendor/easel/esl_msafile2.c:26: 2023-02-17T11:47:04,917 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2023-02-17T11:47:04,918 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:04,919 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-02-17T11:47:04,919 ^ 2023-02-17T11:47:04,920 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2023-02-17T11:47:04,920 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2023-02-17T11:47:04,920 ^~~~~~~ 2023-02-17T11:47:04,921 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-02-17T11:47:04,921 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-02-17T11:47:04,922 ^~~ 2023-02-17T11:47:04,922 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2023-02-17T11:47:04,923 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2023-02-17T11:47:04,923 ^~~~~~~ 2023-02-17T11:47:04,924 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:04,924 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-02-17T11:47:04,925 ^ 2023-02-17T11:47:04,925 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2023-02-17T11:47:04,926 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2023-02-17T11:47:04,926 ^~~~~~~ 2023-02-17T11:47:04,926 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-02-17T11:47:04,927 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-02-17T11:47:04,927 ^~~ 2023-02-17T11:47:04,928 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2023-02-17T11:47:04,929 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2023-02-17T11:47:04,930 ^~~~~~~ 2023-02-17T11:47:05,055 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2023-02-17T11:47:05,057 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o 2023-02-17T11:47:05,318 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2023-02-17T11:47:05,319 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o 2023-02-17T11:47:05,342 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2023-02-17T11:47:05,344 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o 2023-02-17T11:47:07,042 vendor/easel/esl_regexp.c: In function ‘regbranch’: 2023-02-17T11:47:07,043 vendor/easel/esl_regexp.c:793:6: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-02-17T11:47:07,043 int flags; 2023-02-17T11:47:07,044 ^~~~~ 2023-02-17T11:47:07,534 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2023-02-17T11:47:07,536 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o 2023-02-17T11:47:08,931 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2023-02-17T11:47:08,932 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o 2023-02-17T11:47:09,157 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2023-02-17T11:47:09,160 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o 2023-02-17T11:47:09,330 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2023-02-17T11:47:09,332 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o 2023-02-17T11:47:09,510 generating build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o from vendor/easel/easel.c 2023-02-17T11:47:09,511 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o 2023-02-17T11:47:09,858 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2023-02-17T11:47:09,859 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o 2023-02-17T11:47:10,045 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2023-02-17T11:47:10,046 vendor/easel/easel.c:1807:46: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-02-17T11:47:10,047 nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2023-02-17T11:47:10,047 ^~~~~~~~~~~~~~~~ 2023-02-17T11:47:10,112 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2023-02-17T11:47:10,114 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o 2023-02-17T11:47:10,196 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2023-02-17T11:47:10,197 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:10,197 for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2023-02-17T11:47:10,198 ^ 2023-02-17T11:47:10,517 In file included from vendor/easel/esl_hmm.c:9: 2023-02-17T11:47:10,517 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2023-02-17T11:47:10,518 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2023-02-17T11:47:10,520 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:10,520 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-02-17T11:47:10,521 ^ 2023-02-17T11:47:10,521 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2023-02-17T11:47:10,522 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2023-02-17T11:47:10,522 ^~~~~~~ 2023-02-17T11:47:10,522 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o 2023-02-17T11:47:10,523 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-02-17T11:47:10,524 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-02-17T11:47:10,524 ^~~ 2023-02-17T11:47:10,525 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2023-02-17T11:47:10,525 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2023-02-17T11:47:10,525 ^~~~~~~ 2023-02-17T11:47:10,678 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2023-02-17T11:47:10,678 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o 2023-02-17T11:47:12,407 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2023-02-17T11:47:12,409 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o 2023-02-17T11:47:12,935 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2023-02-17T11:47:12,942 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o 2023-02-17T11:47:12,958 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2023-02-17T11:47:12,960 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o 2023-02-17T11:47:13,826 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2023-02-17T11:47:13,826 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o 2023-02-17T11:47:13,976 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2023-02-17T11:47:13,978 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o 2023-02-17T11:47:14,456 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2023-02-17T11:47:14,457 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o 2023-02-17T11:47:14,791 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2023-02-17T11:47:14,792 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o 2023-02-17T11:47:15,580 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2023-02-17T11:47:15,581 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-02-17T11:47:15,581 if (opt_fx) *opt_fx = fx; 2023-02-17T11:47:15,582 ~~~~~~~~^~~~ 2023-02-17T11:47:15,582 vendor/easel/esl_minimizer.c:711:18: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-02-17T11:47:15,583 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2023-02-17T11:47:15,583 ~~^~~ 2023-02-17T11:47:15,584 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2023-02-17T11:47:15,584 double ax,bx,cx; 2023-02-17T11:47:15,585 ^~ 2023-02-17T11:47:15,585 vendor/easel/esl_minimizer.c:711:8: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-02-17T11:47:15,586 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2023-02-17T11:47:15,586 ~^~~~~~~~~~~~~ 2023-02-17T11:47:15,587 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2023-02-17T11:47:15,587 double ax,bx,cx; 2023-02-17T11:47:15,588 ^~ 2023-02-17T11:47:15,953 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2023-02-17T11:47:15,955 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o 2023-02-17T11:47:16,501 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2023-02-17T11:47:16,503 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o 2023-02-17T11:47:16,724 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2023-02-17T11:47:16,726 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o 2023-02-17T11:47:17,131 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2023-02-17T11:47:17,134 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o 2023-02-17T11:47:17,973 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2023-02-17T11:47:17,975 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o 2023-02-17T11:47:18,083 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2023-02-17T11:47:18,084 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o 2023-02-17T11:47:18,600 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2023-02-17T11:47:18,602 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o 2023-02-17T11:47:21,026 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2023-02-17T11:47:21,028 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o 2023-02-17T11:47:21,785 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2023-02-17T11:47:21,786 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o 2023-02-17T11:47:22,181 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2023-02-17T11:47:22,183 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o 2023-02-17T11:47:22,248 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2023-02-17T11:47:22,250 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o 2023-02-17T11:47:22,566 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2023-02-17T11:47:22,567 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,567 if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2023-02-17T11:47:22,568 ^~ 2023-02-17T11:47:22,638 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2023-02-17T11:47:22,639 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,640 if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2023-02-17T11:47:22,640 ^~ 2023-02-17T11:47:22,643 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,644 if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2023-02-17T11:47:22,644 ^~ 2023-02-17T11:47:22,647 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,647 if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2023-02-17T11:47:22,648 ^~ 2023-02-17T11:47:22,672 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2023-02-17T11:47:22,673 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,674 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-02-17T11:47:22,674 ^~ 2023-02-17T11:47:22,677 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2023-02-17T11:47:22,678 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,679 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-02-17T11:47:22,679 ^~ 2023-02-17T11:47:22,682 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2023-02-17T11:47:22,683 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,683 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-02-17T11:47:22,684 ^~ 2023-02-17T11:47:22,691 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2023-02-17T11:47:22,692 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,693 if (status != eslOK || nres != W) { 2023-02-17T11:47:22,693 ^~ 2023-02-17T11:47:22,695 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2023-02-17T11:47:22,697 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,697 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-02-17T11:47:22,697 ^~ 2023-02-17T11:47:22,698 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o 2023-02-17T11:47:22,723 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2023-02-17T11:47:22,724 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,725 if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2023-02-17T11:47:22,725 ^ 2023-02-17T11:47:22,732 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,733 if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2023-02-17T11:47:22,733 ^~ 2023-02-17T11:47:22,735 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2023-02-17T11:47:22,736 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,736 if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2023-02-17T11:47:22,736 ^ 2023-02-17T11:47:22,737 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,737 if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-02-17T11:47:22,737 ^~ 2023-02-17T11:47:22,738 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,739 if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-02-17T11:47:22,739 ^ 2023-02-17T11:47:22,740 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,740 if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-02-17T11:47:22,740 ^ 2023-02-17T11:47:22,741 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,741 if (inx < volume->start_seq || inx > volume->end_seq) { 2023-02-17T11:47:22,742 ^ 2023-02-17T11:47:22,742 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,743 if (inx < volume->start_seq || inx > volume->end_seq) { 2023-02-17T11:47:22,743 ^ 2023-02-17T11:47:22,744 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,744 for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2023-02-17T11:47:22,744 ^ 2023-02-17T11:47:22,745 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,746 if (inx < volume->end_seq) break; 2023-02-17T11:47:22,747 ^ 2023-02-17T11:47:22,747 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,748 if (cnt >= ncbi->volumes) return eslFAIL; 2023-02-17T11:47:22,748 ^~ 2023-02-17T11:47:22,749 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,749 if (ncbi->index_start == -1 || inx > end) { 2023-02-17T11:47:22,750 ^~ 2023-02-17T11:47:22,750 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,751 if (ncbi->index_start == -1 || inx > end) { 2023-02-17T11:47:22,751 ^ 2023-02-17T11:47:22,751 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,752 if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-02-17T11:47:22,752 ^~ 2023-02-17T11:47:22,753 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,753 if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-02-17T11:47:22,754 ^~ 2023-02-17T11:47:22,754 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,754 if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-02-17T11:47:22,755 ^~ 2023-02-17T11:47:22,755 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2023-02-17T11:47:22,756 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,756 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-02-17T11:47:22,757 ^~ 2023-02-17T11:47:22,757 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,758 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-02-17T11:47:22,778 ^~ 2023-02-17T11:47:22,779 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,780 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-02-17T11:47:22,780 ^~ 2023-02-17T11:47:22,780 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2023-02-17T11:47:22,781 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,781 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-02-17T11:47:22,782 ^~ 2023-02-17T11:47:22,782 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,782 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-02-17T11:47:22,783 ^~ 2023-02-17T11:47:22,783 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,784 if (ncbi->seq_apos - sq->doff < size) { 2023-02-17T11:47:22,784 ^ 2023-02-17T11:47:22,784 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2023-02-17T11:47:22,785 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,785 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-02-17T11:47:22,785 ^~ 2023-02-17T11:47:22,786 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,786 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-02-17T11:47:22,787 ^~ 2023-02-17T11:47:22,795 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2023-02-17T11:47:22,796 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,796 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-02-17T11:47:22,797 ^~ 2023-02-17T11:47:22,804 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,804 if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2023-02-17T11:47:22,805 ^~ 2023-02-17T11:47:22,817 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2023-02-17T11:47:22,817 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,818 for (x = 0; x < strlen(ncbisym); ++x) { 2023-02-17T11:47:22,819 ^ 2023-02-17T11:47:22,819 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,819 for (y = 0; y < strlen(abc->sym); ++y) { 2023-02-17T11:47:22,820 ^ 2023-02-17T11:47:22,820 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,821 if (y >= strlen(abc->sym)) return eslEFORMAT; 2023-02-17T11:47:22,821 ^~ 2023-02-17T11:47:22,823 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2023-02-17T11:47:22,824 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,824 for (x = 0; x < strlen(ncbisym); ++x) { 2023-02-17T11:47:22,825 ^ 2023-02-17T11:47:22,825 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,825 for (y = 0; y < strlen(abc->sym); ++y) { 2023-02-17T11:47:22,826 ^ 2023-02-17T11:47:22,826 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:22,827 if (y >= strlen(abc->sym)) return eslEFORMAT; 2023-02-17T11:47:22,827 ^~ 2023-02-17T11:47:22,834 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2023-02-17T11:47:22,835 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:22,836 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2023-02-17T11:47:22,836 ^~ 2023-02-17T11:47:24,178 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2023-02-17T11:47:24,188 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o 2023-02-17T11:47:24,567 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2023-02-17T11:47:24,569 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o 2023-02-17T11:47:25,050 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2023-02-17T11:47:25,051 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o 2023-02-17T11:47:25,450 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2023-02-17T11:47:25,452 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o 2023-02-17T11:47:27,783 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2023-02-17T11:47:27,785 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o 2023-02-17T11:47:27,827 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2023-02-17T11:47:27,830 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o 2023-02-17T11:47:28,416 generating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2023-02-17T11:47:28,419 creating build/temp.linux-armv7l-cpython-37/build 2023-02-17T11:47:28,419 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2023-02-17T11:47:28,421 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o 2023-02-17T11:47:28,434 creating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37 2023-02-17T11:47:28,438 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2023-02-17T11:47:28,990 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2023-02-17T11:47:28,991 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:28,992 if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2023-02-17T11:47:28,992 ^~ 2023-02-17T11:47:29,443 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2023-02-17T11:47:29,445 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o 2023-02-17T11:47:29,495 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2023-02-17T11:47:29,496 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-02-17T11:47:29,496 if (grp & cmask) { status = eslEOD; goto ERROR; } 2023-02-17T11:47:29,496 ~~~~^~~~~~~ 2023-02-17T11:47:29,734 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2023-02-17T11:47:29,736 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o 2023-02-17T11:47:30,083 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2023-02-17T11:47:30,085 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o 2023-02-17T11:47:30,257 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2023-02-17T11:47:30,258 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o 2023-02-17T11:47:31,033 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2023-02-17T11:47:31,035 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o 2023-02-17T11:47:31,373 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2023-02-17T11:47:31,374 static double stopwatch_getRealTime(void); 2023-02-17T11:47:31,374 ^~~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:33,495 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2023-02-17T11:47:33,496 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o 2023-02-17T11:47:36,076 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libeasel.a build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2023-02-17T11:47:36,565 generating build/temp.linux-armv7l-cpython-37/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-37/p7_hmmfile.c 2023-02-17T11:47:36,573 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2023-02-17T11:47:36,575 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2023-02-17T11:47:36,576 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o 2023-02-17T11:47:36,577 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2023-02-17T11:47:36,578 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o 2023-02-17T11:47:36,580 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2023-02-17T11:47:36,581 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o 2023-02-17T11:47:36,582 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2023-02-17T11:47:36,616 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o 2023-02-17T11:47:37,027 In file included from vendor/hmmer/src/build.c:32: 2023-02-17T11:47:37,027 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-02-17T11:47:37,028 #error "No vector implementation enabled" 2023-02-17T11:47:37,029 ^~~~~ 2023-02-17T11:47:37,029 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,030 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-02-17T11:47:37,030 ^~~~~~ 2023-02-17T11:47:37,031 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,032 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-02-17T11:47:37,032 ^~~~~~ 2023-02-17T11:47:37,033 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,034 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-02-17T11:47:37,034 ^~~~~~ 2023-02-17T11:47:37,035 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,035 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-02-17T11:47:37,036 ^~~~~~ 2023-02-17T11:47:37,036 In file included from vendor/hmmer/src/errors.c:19: 2023-02-17T11:47:37,037 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-02-17T11:47:37,038 #error "No vector implementation enabled" 2023-02-17T11:47:37,047 ^~~~~ 2023-02-17T11:47:37,047 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,048 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-02-17T11:47:37,048 ^~~~~~~~~~~ 2023-02-17T11:47:37,049 P7_PROFILE 2023-02-17T11:47:37,050 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,051 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-02-17T11:47:37,051 ^~~~~~ 2023-02-17T11:47:37,052 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,053 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-02-17T11:47:37,054 ^~~~~~ 2023-02-17T11:47:37,054 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,055 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-02-17T11:47:37,055 ^~~~~~ 2023-02-17T11:47:37,056 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,056 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-02-17T11:47:37,057 ^~~~~~ 2023-02-17T11:47:37,057 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,058 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-02-17T11:47:37,069 ^~~~~~~~~~~ 2023-02-17T11:47:37,069 P7_PROFILE 2023-02-17T11:47:37,070 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,071 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-02-17T11:47:37,072 ^~~~~~~~~~~ 2023-02-17T11:47:37,073 P7_PROFILE 2023-02-17T11:47:37,073 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,074 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-02-17T11:47:37,075 ^~~~~~~~~~~ 2023-02-17T11:47:37,076 P7_PROFILE 2023-02-17T11:47:37,077 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,077 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-02-17T11:47:37,078 ^~~~~~~~~~~ 2023-02-17T11:47:37,079 P7_PROFILE 2023-02-17T11:47:37,079 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,080 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-02-17T11:47:37,080 ^~~~~~~~~~~ 2023-02-17T11:47:37,081 P7_PROFILE 2023-02-17T11:47:37,083 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,084 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-02-17T11:47:37,085 ^~~~~~~~~~~ 2023-02-17T11:47:37,086 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,087 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-02-17T11:47:37,087 ^~~~~~~~~~~ 2023-02-17T11:47:37,088 P7_PROFILE 2023-02-17T11:47:37,089 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,089 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-02-17T11:47:37,090 ^~~~~~~~~~~ 2023-02-17T11:47:37,091 P7_PROFILE 2023-02-17T11:47:37,091 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,092 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-02-17T11:47:37,093 ^~~~~~~~~~~ 2023-02-17T11:47:37,094 P7_PROFILE 2023-02-17T11:47:37,095 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,096 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-02-17T11:47:37,097 ^~~~~~~~~~~ 2023-02-17T11:47:37,098 P7_PROFILE 2023-02-17T11:47:37,099 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,100 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-02-17T11:47:37,101 ^~~~~~~~~~~ 2023-02-17T11:47:37,101 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2023-02-17T11:47:37,102 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-02-17T11:47:37,103 #error "No vector implementation enabled" 2023-02-17T11:47:37,104 ^~~~~ 2023-02-17T11:47:37,104 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,105 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-02-17T11:47:37,105 ^~~~~~ 2023-02-17T11:47:37,106 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,107 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-02-17T11:47:37,108 ^~~~~~ 2023-02-17T11:47:37,109 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,109 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,110 ^~~~~~~~~~~ 2023-02-17T11:47:37,111 P7_PROFILE 2023-02-17T11:47:37,112 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,113 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-02-17T11:47:37,113 ^~~~~~ 2023-02-17T11:47:37,114 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,114 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-02-17T11:47:37,115 ^~~~~~ 2023-02-17T11:47:37,116 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,117 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-02-17T11:47:37,117 ^~~~~~~~~~~ 2023-02-17T11:47:37,118 P7_PROFILE 2023-02-17T11:47:37,119 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,119 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,120 ^~~~~~ 2023-02-17T11:47:37,121 P7_GMX 2023-02-17T11:47:37,122 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,123 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-02-17T11:47:37,123 ^~~~~~~~~~~ 2023-02-17T11:47:37,124 P7_PROFILE 2023-02-17T11:47:37,125 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,126 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,127 ^~~~~~ 2023-02-17T11:47:37,128 P7_GMX 2023-02-17T11:47:37,129 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,130 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,131 ^~~~~~~~~~~ 2023-02-17T11:47:37,132 P7_PROFILE 2023-02-17T11:47:37,132 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,133 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,134 ^~~~~~ 2023-02-17T11:47:37,135 P7_GMX 2023-02-17T11:47:37,135 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,136 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,136 ^~~~~~ 2023-02-17T11:47:37,137 P7_GMX 2023-02-17T11:47:37,138 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,138 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,139 ^~~~~~ 2023-02-17T11:47:37,140 P7_GMX 2023-02-17T11:47:37,141 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,142 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,142 ^~~~~~ 2023-02-17T11:47:37,158 P7_GMX 2023-02-17T11:47:37,159 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,159 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-02-17T11:47:37,160 ^~~~~~~~~~~ 2023-02-17T11:47:37,161 P7_PROFILE 2023-02-17T11:47:37,161 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,162 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,162 ^~~~~~ 2023-02-17T11:47:37,163 P7_GMX 2023-02-17T11:47:37,164 In file included from vendor/hmmer/src/generic_msv.c:20: 2023-02-17T11:47:37,165 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-02-17T11:47:37,166 #error "No vector implementation enabled" 2023-02-17T11:47:37,166 ^~~~~ 2023-02-17T11:47:37,167 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,167 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-02-17T11:47:37,168 ^~~~~~ 2023-02-17T11:47:37,169 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,169 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,170 ^~~~~~ 2023-02-17T11:47:37,170 P7_GMX 2023-02-17T11:47:37,171 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,172 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-02-17T11:47:37,172 ^~~~~~ 2023-02-17T11:47:37,175 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,175 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-02-17T11:47:37,176 ^~~~~~ 2023-02-17T11:47:37,176 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,177 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-02-17T11:47:37,177 ^~~~~~ 2023-02-17T11:47:37,178 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,179 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-02-17T11:47:37,179 ^~~~~~~~~~~ 2023-02-17T11:47:37,180 P7_PROFILE 2023-02-17T11:47:37,181 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,182 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-02-17T11:47:37,183 ^~~~~~~~~~~ 2023-02-17T11:47:37,184 P7_PROFILE 2023-02-17T11:47:37,184 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,185 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-02-17T11:47:37,185 ^~~~~~~~~~~ 2023-02-17T11:47:37,186 P7_PROFILE 2023-02-17T11:47:37,186 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,187 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-02-17T11:47:37,187 ^~~~~~~~~~~ 2023-02-17T11:47:37,188 P7_PROFILE 2023-02-17T11:47:37,204 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,205 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-02-17T11:47:37,205 ^~~~~~~~~~~ 2023-02-17T11:47:37,207 P7_PROFILE 2023-02-17T11:47:37,208 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,209 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-02-17T11:47:37,209 ^~~~~~~~~~~ 2023-02-17T11:47:37,210 P7_PROFILE 2023-02-17T11:47:37,210 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,211 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-02-17T11:47:37,211 ^~~~~~~~~~~ 2023-02-17T11:47:37,212 P7_PROFILE 2023-02-17T11:47:37,212 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,212 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-02-17T11:47:37,213 ^~~~~~~~~~~ 2023-02-17T11:47:37,213 P7_PROFILE 2023-02-17T11:47:37,214 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,214 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-02-17T11:47:37,215 ^~~~~~~~~~~ 2023-02-17T11:47:37,215 P7_PROFILE 2023-02-17T11:47:37,216 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,217 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-02-17T11:47:37,217 ^~~~~~~~~~~ 2023-02-17T11:47:37,218 P7_PROFILE 2023-02-17T11:47:37,219 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,219 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-02-17T11:47:37,219 ^~~~~~~~~~~ 2023-02-17T11:47:37,220 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,220 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-02-17T11:47:37,220 ^~~~~~~~~~~ 2023-02-17T11:47:37,221 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,221 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-02-17T11:47:37,222 ^~~~~~~~~~~ 2023-02-17T11:47:37,223 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,223 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-02-17T11:47:37,224 ^~~~~~~~~~~ 2023-02-17T11:47:37,224 P7_PROFILE 2023-02-17T11:47:37,225 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,225 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-02-17T11:47:37,225 ^~~~~~~~~~~ 2023-02-17T11:47:37,226 P7_PROFILE 2023-02-17T11:47:37,226 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,227 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-02-17T11:47:37,227 ^~~~~~~~~~~ 2023-02-17T11:47:37,227 P7_PROFILE 2023-02-17T11:47:37,228 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,228 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-02-17T11:47:37,229 ^~~~~~~~~~~ 2023-02-17T11:47:37,230 P7_PROFILE 2023-02-17T11:47:37,230 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,231 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-02-17T11:47:37,231 ^~~~~~~~~~~ 2023-02-17T11:47:37,232 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,232 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-02-17T11:47:37,233 ^~~~~~~~~~~ 2023-02-17T11:47:37,233 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,233 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-02-17T11:47:37,234 ^~~~~~~~~~~ 2023-02-17T11:47:37,234 P7_PROFILE 2023-02-17T11:47:37,234 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,235 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-02-17T11:47:37,235 ^~~~~~~~~~~ 2023-02-17T11:47:37,235 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,236 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-02-17T11:47:37,236 ^~~~~~~~~~~ 2023-02-17T11:47:37,236 P7_PROFILE 2023-02-17T11:47:37,237 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,237 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-02-17T11:47:37,237 ^~~~~~~~~~~ 2023-02-17T11:47:37,238 P7_PROFILE 2023-02-17T11:47:37,238 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,239 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-02-17T11:47:37,239 ^~~~~~~~~~~ 2023-02-17T11:47:37,242 P7_PROFILE 2023-02-17T11:47:37,243 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,244 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-02-17T11:47:37,244 ^~~~~~~~~~~ 2023-02-17T11:47:37,244 P7_PROFILE 2023-02-17T11:47:37,245 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,245 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-02-17T11:47:37,245 ^~~~~~~~~~~ 2023-02-17T11:47:37,246 P7_PROFILE 2023-02-17T11:47:37,246 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,247 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-02-17T11:47:37,247 ^~~~~~~~~~~ 2023-02-17T11:47:37,247 P7_PROFILE 2023-02-17T11:47:37,248 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,249 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,249 ^~~~~~~~~~~ 2023-02-17T11:47:37,250 P7_PROFILE 2023-02-17T11:47:37,250 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,251 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-02-17T11:47:37,251 ^~~~~~~~~~~ 2023-02-17T11:47:37,251 P7_PROFILE 2023-02-17T11:47:37,252 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,252 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,253 ^~~~~~ 2023-02-17T11:47:37,253 P7_GMX 2023-02-17T11:47:37,254 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,254 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,254 ^~~~~~ 2023-02-17T11:47:37,255 P7_GMX 2023-02-17T11:47:37,255 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,255 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,256 ^~~~~~ 2023-02-17T11:47:37,256 P7_GMX 2023-02-17T11:47:37,256 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,257 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,257 ^~~~~~ 2023-02-17T11:47:37,257 P7_GMX 2023-02-17T11:47:37,258 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,258 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,259 ^~~~~~~~~~~ 2023-02-17T11:47:37,259 P7_PROFILE 2023-02-17T11:47:37,260 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,260 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-02-17T11:47:37,261 ^~~~~~~~~~~ 2023-02-17T11:47:37,261 P7_PROFILE 2023-02-17T11:47:37,262 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2023-02-17T11:47:37,263 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o 2023-02-17T11:47:37,263 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,264 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,264 ^~~~~~ 2023-02-17T11:47:37,265 P7_GMX 2023-02-17T11:47:37,265 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,266 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-02-17T11:47:37,266 ^~~~~~~~~~~ 2023-02-17T11:47:37,267 P7_PROFILE 2023-02-17T11:47:37,267 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,268 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,268 ^~~~~~ 2023-02-17T11:47:37,269 P7_GMX 2023-02-17T11:47:37,269 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,270 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-02-17T11:47:37,270 ^~~~~~~~~~~ 2023-02-17T11:47:37,271 P7_PROFILE 2023-02-17T11:47:37,271 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,271 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,272 ^~~~~~ 2023-02-17T11:47:37,272 P7_GMX 2023-02-17T11:47:37,273 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,273 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-02-17T11:47:37,274 ^~~~~~~~~~~ 2023-02-17T11:47:37,275 P7_PROFILE 2023-02-17T11:47:37,276 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,277 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-02-17T11:47:37,277 ^~~~~~~~~~~ 2023-02-17T11:47:37,278 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,278 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-02-17T11:47:37,279 ^~~~~~~~~~~ 2023-02-17T11:47:37,279 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,279 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,280 ^~~~~~ 2023-02-17T11:47:37,280 P7_GMX 2023-02-17T11:47:37,281 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,282 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-02-17T11:47:37,283 ^~~~~~~~~~~ 2023-02-17T11:47:37,284 P7_PROFILE 2023-02-17T11:47:37,284 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,285 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-02-17T11:47:37,286 ^~~~~~~~~~~ 2023-02-17T11:47:37,286 P7_PROFILE 2023-02-17T11:47:37,287 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,287 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-02-17T11:47:37,288 ^~~~~~~~~~~ 2023-02-17T11:47:37,288 P7_PROFILE 2023-02-17T11:47:37,289 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,289 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-02-17T11:47:37,290 ^~~~~~~~~~~ 2023-02-17T11:47:37,290 P7_PROFILE 2023-02-17T11:47:37,291 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,291 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-02-17T11:47:37,292 ^~~~~~~~~~~ 2023-02-17T11:47:37,292 P7_PROFILE 2023-02-17T11:47:37,293 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,293 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-02-17T11:47:37,293 ^~~~~~~~~~~ 2023-02-17T11:47:37,294 P7_PROFILE 2023-02-17T11:47:37,294 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,295 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-02-17T11:47:37,295 ^~~~~~~~~~~ 2023-02-17T11:47:37,296 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,296 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-02-17T11:47:37,297 ^~~~~~~~~~~ 2023-02-17T11:47:37,297 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,297 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-02-17T11:47:37,298 ^~~~~~~~~~~ 2023-02-17T11:47:37,299 P7_PROFILE 2023-02-17T11:47:37,299 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,299 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-02-17T11:47:37,300 ^~~~~~~~~~~ 2023-02-17T11:47:37,300 P7_PROFILE 2023-02-17T11:47:37,301 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2023-02-17T11:47:37,301 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o 2023-02-17T11:47:37,301 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,302 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-02-17T11:47:37,302 ^~~~~~~~~~~ 2023-02-17T11:47:37,302 P7_PROFILE 2023-02-17T11:47:37,303 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2023-02-17T11:47:37,303 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o 2023-02-17T11:47:37,328 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2023-02-17T11:47:37,329 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o 2023-02-17T11:47:37,457 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2023-02-17T11:47:37,459 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o 2023-02-17T11:47:37,498 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2023-02-17T11:47:37,501 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o 2023-02-17T11:47:37,629 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2023-02-17T11:47:37,629 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-02-17T11:47:37,630 #error "No vector implementation enabled" 2023-02-17T11:47:37,630 ^~~~~ 2023-02-17T11:47:37,634 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,634 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-02-17T11:47:37,635 ^~~~~~ 2023-02-17T11:47:37,635 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,636 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-02-17T11:47:37,636 ^~~~~~ 2023-02-17T11:47:37,637 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,639 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-02-17T11:47:37,639 ^~~~~~ 2023-02-17T11:47:37,640 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,640 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-02-17T11:47:37,641 ^~~~~~ 2023-02-17T11:47:37,644 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,645 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-02-17T11:47:37,646 ^~~~~~~~~~~ 2023-02-17T11:47:37,646 P7_PROFILE 2023-02-17T11:47:37,647 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,648 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-02-17T11:47:37,649 ^~~~~~~~~~~ 2023-02-17T11:47:37,649 P7_PROFILE 2023-02-17T11:47:37,661 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,662 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-02-17T11:47:37,662 ^~~~~~~~~~~ 2023-02-17T11:47:37,663 P7_PROFILE 2023-02-17T11:47:37,664 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,665 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-02-17T11:47:37,665 ^~~~~~~~~~~ 2023-02-17T11:47:37,665 P7_PROFILE 2023-02-17T11:47:37,666 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2023-02-17T11:47:37,668 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o 2023-02-17T11:47:37,668 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,669 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-02-17T11:47:37,669 ^~~~~~~~~~~ 2023-02-17T11:47:37,674 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,675 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-02-17T11:47:37,675 ^~~~~~~~~~~ 2023-02-17T11:47:37,676 P7_PROFILE 2023-02-17T11:47:37,677 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,678 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-02-17T11:47:37,681 ^~~~~~~~~~~ 2023-02-17T11:47:37,681 P7_PROFILE 2023-02-17T11:47:37,682 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,683 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,683 ^~~~~~~~~~~ 2023-02-17T11:47:37,684 P7_PROFILE 2023-02-17T11:47:37,689 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,690 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,690 ^~~~~~ 2023-02-17T11:47:37,691 P7_GMX 2023-02-17T11:47:37,692 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,692 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,693 ^~~~~~ 2023-02-17T11:47:37,694 P7_GMX 2023-02-17T11:47:37,695 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,695 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,696 ^~~~~~ 2023-02-17T11:47:37,696 P7_GMX 2023-02-17T11:47:37,697 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,697 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,697 ^~~~~~ 2023-02-17T11:47:37,698 P7_GMX 2023-02-17T11:47:37,701 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,702 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-02-17T11:47:37,703 ^~~~~~~~~~~ 2023-02-17T11:47:37,704 P7_PROFILE 2023-02-17T11:47:37,705 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,706 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-02-17T11:47:37,707 ^~~~~~~~~~~ 2023-02-17T11:47:37,707 P7_PROFILE 2023-02-17T11:47:37,719 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,720 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-02-17T11:47:37,721 ^~~~~~~~~~~ 2023-02-17T11:47:37,721 P7_PROFILE 2023-02-17T11:47:37,722 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,723 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-02-17T11:47:37,723 ^~~~~~~~~~~ 2023-02-17T11:47:37,724 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,725 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-02-17T11:47:37,725 ^~~~~~~~~~~ 2023-02-17T11:47:37,725 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,726 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-02-17T11:47:37,726 ^~~~~~~~~~~ 2023-02-17T11:47:37,727 P7_PROFILE 2023-02-17T11:47:37,727 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,728 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-02-17T11:47:37,728 ^~~~~~~~~~~ 2023-02-17T11:47:37,730 P7_PROFILE 2023-02-17T11:47:37,746 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,747 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-02-17T11:47:37,751 ^~~~~~~~~~~ 2023-02-17T11:47:37,766 P7_PROFILE 2023-02-17T11:47:37,768 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2023-02-17T11:47:37,769 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o 2023-02-17T11:47:37,791 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2023-02-17T11:47:37,793 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o 2023-02-17T11:47:37,824 In file included from vendor/hmmer/src/modelconfig.c:25: 2023-02-17T11:47:37,825 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-02-17T11:47:37,826 #error "No vector implementation enabled" 2023-02-17T11:47:37,826 ^~~~~ 2023-02-17T11:47:37,827 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,827 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-02-17T11:47:37,827 ^~~~~~ 2023-02-17T11:47:37,828 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,829 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-02-17T11:47:37,829 ^~~~~~ 2023-02-17T11:47:37,830 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,830 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-02-17T11:47:37,831 ^~~~~~ 2023-02-17T11:47:37,831 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:37,832 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-02-17T11:47:37,832 ^~~~~~ 2023-02-17T11:47:37,833 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,834 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-02-17T11:47:37,835 ^~~~~~~~~~~ 2023-02-17T11:47:37,836 P7_PROFILE 2023-02-17T11:47:37,837 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,838 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-02-17T11:47:37,839 ^~~~~~~~~~~ 2023-02-17T11:47:37,839 P7_PROFILE 2023-02-17T11:47:37,840 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,841 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-02-17T11:47:37,841 ^~~~~~~~~~~ 2023-02-17T11:47:37,842 P7_PROFILE 2023-02-17T11:47:37,842 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,843 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-02-17T11:47:37,843 ^~~~~~~~~~~ 2023-02-17T11:47:37,844 P7_PROFILE 2023-02-17T11:47:37,846 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,847 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-02-17T11:47:37,847 ^~~~~~~~~~~ 2023-02-17T11:47:37,851 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,852 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-02-17T11:47:37,853 ^~~~~~~~~~~ 2023-02-17T11:47:37,853 P7_PROFILE 2023-02-17T11:47:37,855 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,855 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-02-17T11:47:37,856 ^~~~~~~~~~~ 2023-02-17T11:47:37,857 P7_PROFILE 2023-02-17T11:47:37,859 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,860 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,861 ^~~~~~~~~~~ 2023-02-17T11:47:37,862 P7_PROFILE 2023-02-17T11:47:37,862 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,864 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,864 ^~~~~~ 2023-02-17T11:47:37,865 P7_GMX 2023-02-17T11:47:37,866 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,867 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,867 ^~~~~~ 2023-02-17T11:47:37,868 P7_GMX 2023-02-17T11:47:37,870 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,871 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,872 ^~~~~~ 2023-02-17T11:47:37,872 P7_GMX 2023-02-17T11:47:37,873 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:37,874 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:37,874 ^~~~~~ 2023-02-17T11:47:37,875 P7_GMX 2023-02-17T11:47:37,881 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,885 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-02-17T11:47:37,886 ^~~~~~~~~~~ 2023-02-17T11:47:37,887 P7_PROFILE 2023-02-17T11:47:37,887 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,888 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-02-17T11:47:37,890 ^~~~~~~~~~~ 2023-02-17T11:47:37,891 P7_PROFILE 2023-02-17T11:47:37,891 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,894 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-02-17T11:47:37,894 ^~~~~~~~~~~ 2023-02-17T11:47:37,897 P7_PROFILE 2023-02-17T11:47:37,898 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,898 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-02-17T11:47:37,898 ^~~~~~~~~~~ 2023-02-17T11:47:37,899 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:37,899 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-02-17T11:47:37,899 ^~~~~~~~~~~ 2023-02-17T11:47:37,900 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,900 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-02-17T11:47:37,900 ^~~~~~~~~~~ 2023-02-17T11:47:37,901 P7_PROFILE 2023-02-17T11:47:37,902 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,902 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-02-17T11:47:37,902 ^~~~~~~~~~~ 2023-02-17T11:47:37,903 P7_PROFILE 2023-02-17T11:47:37,914 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:37,914 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-02-17T11:47:37,915 ^~~~~~~~~~~ 2023-02-17T11:47:37,915 P7_PROFILE 2023-02-17T11:47:37,948 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2023-02-17T11:47:37,950 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o 2023-02-17T11:47:38,172 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2023-02-17T11:47:38,173 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-02-17T11:47:38,173 #error "No vector implementation enabled" 2023-02-17T11:47:38,174 ^~~~~ 2023-02-17T11:47:38,175 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,176 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-02-17T11:47:38,176 ^~~~~~ 2023-02-17T11:47:38,177 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,177 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-02-17T11:47:38,178 ^~~~~~ 2023-02-17T11:47:38,179 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,180 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-02-17T11:47:38,180 ^~~~~~ 2023-02-17T11:47:38,181 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,181 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-02-17T11:47:38,182 ^~~~~~ 2023-02-17T11:47:38,184 In file included from vendor/hmmer/src/hmmer.c:18: 2023-02-17T11:47:38,184 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-02-17T11:47:38,185 #error "No vector implementation enabled" 2023-02-17T11:47:38,186 ^~~~~ 2023-02-17T11:47:38,187 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,188 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-02-17T11:47:38,189 ^~~~~~ 2023-02-17T11:47:38,189 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,190 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-02-17T11:47:38,191 ^~~~~~ 2023-02-17T11:47:38,192 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,193 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-02-17T11:47:38,194 ^~~~~~ 2023-02-17T11:47:38,194 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,195 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-02-17T11:47:38,196 ^~~~~~ 2023-02-17T11:47:38,196 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,197 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-02-17T11:47:38,197 ^~~~~~~~~~~ 2023-02-17T11:47:38,198 P7_PROFILE 2023-02-17T11:47:38,199 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,199 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-02-17T11:47:38,200 ^~~~~~~~~~~ 2023-02-17T11:47:38,200 P7_PROFILE 2023-02-17T11:47:38,200 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,201 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-02-17T11:47:38,201 ^~~~~~~~~~~ 2023-02-17T11:47:38,202 P7_PROFILE 2023-02-17T11:47:38,202 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,203 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-02-17T11:47:38,204 ^~~~~~~~~~~ 2023-02-17T11:47:38,205 P7_PROFILE 2023-02-17T11:47:38,206 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,206 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-02-17T11:47:38,207 ^~~~~~~~~~~ 2023-02-17T11:47:38,208 P7_PROFILE 2023-02-17T11:47:38,208 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,209 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-02-17T11:47:38,210 ^~~~~~~~~~~ 2023-02-17T11:47:38,210 P7_PROFILE 2023-02-17T11:47:38,211 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,211 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-02-17T11:47:38,212 ^~~~~~~~~~~ 2023-02-17T11:47:38,213 P7_PROFILE 2023-02-17T11:47:38,214 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,214 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-02-17T11:47:38,215 ^~~~~~~~~~~ 2023-02-17T11:47:38,216 P7_PROFILE 2023-02-17T11:47:38,217 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,217 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-02-17T11:47:38,218 ^~~~~~~~~~~ 2023-02-17T11:47:38,219 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,220 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-02-17T11:47:38,220 ^~~~~~~~~~~ 2023-02-17T11:47:38,221 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,222 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-02-17T11:47:38,223 ^~~~~~~~~~~ 2023-02-17T11:47:38,223 P7_PROFILE 2023-02-17T11:47:38,224 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,225 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-02-17T11:47:38,226 ^~~~~~~~~~~ 2023-02-17T11:47:38,226 P7_PROFILE 2023-02-17T11:47:38,227 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,228 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-02-17T11:47:38,228 ^~~~~~~~~~~ 2023-02-17T11:47:38,229 P7_PROFILE 2023-02-17T11:47:38,230 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,230 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-02-17T11:47:38,231 ^~~~~~~~~~~ 2023-02-17T11:47:38,231 P7_PROFILE 2023-02-17T11:47:38,231 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,232 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,232 ^~~~~~~~~~~ 2023-02-17T11:47:38,232 P7_PROFILE 2023-02-17T11:47:38,233 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,234 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,235 ^~~~~~~~~~~ 2023-02-17T11:47:38,235 P7_PROFILE 2023-02-17T11:47:38,236 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,237 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,238 ^~~~~~ 2023-02-17T11:47:38,239 P7_GMX 2023-02-17T11:47:38,239 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,240 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,240 ^~~~~~ 2023-02-17T11:47:38,241 P7_GMX 2023-02-17T11:47:38,241 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,242 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,243 ^~~~~~ 2023-02-17T11:47:38,244 P7_GMX 2023-02-17T11:47:38,244 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,245 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,246 ^~~~~~ 2023-02-17T11:47:38,246 P7_GMX 2023-02-17T11:47:38,247 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,248 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,248 ^~~~~~ 2023-02-17T11:47:38,249 P7_GMX 2023-02-17T11:47:38,250 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,251 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,252 ^~~~~~ 2023-02-17T11:47:38,252 P7_GMX 2023-02-17T11:47:38,253 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,254 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,254 ^~~~~~ 2023-02-17T11:47:38,255 P7_GMX 2023-02-17T11:47:38,255 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,256 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,256 ^~~~~~ 2023-02-17T11:47:38,257 P7_GMX 2023-02-17T11:47:38,257 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,258 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-02-17T11:47:38,258 ^~~~~~~~~~~ 2023-02-17T11:47:38,259 P7_PROFILE 2023-02-17T11:47:38,260 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,261 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-02-17T11:47:38,261 ^~~~~~~~~~~ 2023-02-17T11:47:38,262 P7_PROFILE 2023-02-17T11:47:38,262 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,262 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-02-17T11:47:38,263 ^~~~~~~~~~~ 2023-02-17T11:47:38,263 P7_PROFILE 2023-02-17T11:47:38,264 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,264 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-02-17T11:47:38,265 ^~~~~~~~~~~ 2023-02-17T11:47:38,265 P7_PROFILE 2023-02-17T11:47:38,266 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,266 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-02-17T11:47:38,267 ^~~~~~~~~~~ 2023-02-17T11:47:38,268 P7_PROFILE 2023-02-17T11:47:38,268 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,269 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-02-17T11:47:38,269 ^~~~~~~~~~~ 2023-02-17T11:47:38,270 P7_PROFILE 2023-02-17T11:47:38,271 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,272 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-02-17T11:47:38,273 ^~~~~~~~~~~ 2023-02-17T11:47:38,274 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,274 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-02-17T11:47:38,275 ^~~~~~~~~~~ 2023-02-17T11:47:38,276 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,276 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-02-17T11:47:38,277 ^~~~~~~~~~~ 2023-02-17T11:47:38,278 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,278 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-02-17T11:47:38,279 ^~~~~~~~~~~ 2023-02-17T11:47:38,279 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,280 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-02-17T11:47:38,280 ^~~~~~~~~~~ 2023-02-17T11:47:38,281 P7_PROFILE 2023-02-17T11:47:38,281 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,282 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-02-17T11:47:38,282 ^~~~~~~~~~~ 2023-02-17T11:47:38,283 P7_PROFILE 2023-02-17T11:47:38,283 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,288 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-02-17T11:47:38,289 ^~~~~~~~~~~ 2023-02-17T11:47:38,289 P7_PROFILE 2023-02-17T11:47:38,290 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,290 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-02-17T11:47:38,291 ^~~~~~~~~~~ 2023-02-17T11:47:38,291 P7_PROFILE 2023-02-17T11:47:38,292 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,292 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-02-17T11:47:38,293 ^~~~~~~~~~~ 2023-02-17T11:47:38,293 P7_PROFILE 2023-02-17T11:47:38,294 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,294 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-02-17T11:47:38,294 ^~~~~~~~~~~ 2023-02-17T11:47:38,295 P7_PROFILE 2023-02-17T11:47:38,296 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2023-02-17T11:47:38,296 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o 2023-02-17T11:47:38,341 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2023-02-17T11:47:38,343 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o 2023-02-17T11:47:38,358 In file included from vendor/hmmer/src/tracealign.c:15: 2023-02-17T11:47:38,358 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-02-17T11:47:38,359 #error "No vector implementation enabled" 2023-02-17T11:47:38,359 ^~~~~ 2023-02-17T11:47:38,361 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,362 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-02-17T11:47:38,362 ^~~~~~ 2023-02-17T11:47:38,363 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,363 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-02-17T11:47:38,364 ^~~~~~ 2023-02-17T11:47:38,365 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,366 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-02-17T11:47:38,366 ^~~~~~ 2023-02-17T11:47:38,367 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,367 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-02-17T11:47:38,368 ^~~~~~ 2023-02-17T11:47:38,369 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,370 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-02-17T11:47:38,370 ^~~~~~~~~~~ 2023-02-17T11:47:38,371 P7_PROFILE 2023-02-17T11:47:38,372 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,372 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-02-17T11:47:38,373 ^~~~~~~~~~~ 2023-02-17T11:47:38,373 P7_PROFILE 2023-02-17T11:47:38,387 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,388 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-02-17T11:47:38,388 ^~~~~~~~~~~ 2023-02-17T11:47:38,389 P7_PROFILE 2023-02-17T11:47:38,389 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,390 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-02-17T11:47:38,391 ^~~~~~~~~~~ 2023-02-17T11:47:38,392 P7_PROFILE 2023-02-17T11:47:38,392 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,393 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-02-17T11:47:38,393 ^~~~~~~~~~~ 2023-02-17T11:47:38,394 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,395 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-02-17T11:47:38,396 ^~~~~~~~~~~ 2023-02-17T11:47:38,396 P7_PROFILE 2023-02-17T11:47:38,397 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,398 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-02-17T11:47:38,408 ^~~~~~~~~~~ 2023-02-17T11:47:38,409 P7_PROFILE 2023-02-17T11:47:38,410 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,410 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,411 ^~~~~~~~~~~ 2023-02-17T11:47:38,412 P7_PROFILE 2023-02-17T11:47:38,412 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,413 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,413 ^~~~~~ 2023-02-17T11:47:38,414 P7_GMX 2023-02-17T11:47:38,415 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,415 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,416 ^~~~~~ 2023-02-17T11:47:38,416 P7_GMX 2023-02-17T11:47:38,417 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,417 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,428 ^~~~~~ 2023-02-17T11:47:38,429 P7_GMX 2023-02-17T11:47:38,429 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,430 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,430 ^~~~~~ 2023-02-17T11:47:38,430 P7_GMX 2023-02-17T11:47:38,431 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,431 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-02-17T11:47:38,432 ^~~~~~~~~~~ 2023-02-17T11:47:38,432 P7_PROFILE 2023-02-17T11:47:38,432 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,433 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-02-17T11:47:38,434 ^~~~~~~~~~~ 2023-02-17T11:47:38,434 P7_PROFILE 2023-02-17T11:47:38,435 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,435 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-02-17T11:47:38,436 ^~~~~~~~~~~ 2023-02-17T11:47:38,436 P7_PROFILE 2023-02-17T11:47:38,436 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,437 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-02-17T11:47:38,437 ^~~~~~~~~~~ 2023-02-17T11:47:38,438 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,448 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-02-17T11:47:38,449 ^~~~~~~~~~~ 2023-02-17T11:47:38,449 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,450 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-02-17T11:47:38,451 ^~~~~~~~~~~ 2023-02-17T11:47:38,452 P7_PROFILE 2023-02-17T11:47:38,452 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,453 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-02-17T11:47:38,453 ^~~~~~~~~~~ 2023-02-17T11:47:38,454 P7_PROFILE 2023-02-17T11:47:38,455 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,455 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-02-17T11:47:38,456 ^~~~~~~~~~~ 2023-02-17T11:47:38,456 P7_PROFILE 2023-02-17T11:47:38,457 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2023-02-17T11:47:38,457 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,458 P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2023-02-17T11:47:38,463 ^~~~~~ 2023-02-17T11:47:38,463 P7_GMX 2023-02-17T11:47:38,464 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,465 P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2023-02-17T11:47:38,465 ^~~~~~ 2023-02-17T11:47:38,466 P7_GMX 2023-02-17T11:47:38,466 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,467 P7_OPROFILE *om = NULL; 2023-02-17T11:47:38,467 ^~~~~~~~~~~ 2023-02-17T11:47:38,468 P7_PROFILE 2023-02-17T11:47:38,469 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,469 om = p7_oprofile_Create(hmm->M, hmm->abc); 2023-02-17T11:47:38,470 ^~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,470 p7_profile_Create 2023-02-17T11:47:38,471 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2023-02-17T11:47:38,471 om = p7_oprofile_Create(hmm->M, hmm->abc); 2023-02-17T11:47:38,472 ^ 2023-02-17T11:47:38,472 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,473 p7_oprofile_Convert(gm, om); 2023-02-17T11:47:38,474 ^~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,474 p7_profile_Compare 2023-02-17T11:47:38,475 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,475 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2023-02-17T11:47:38,476 ^~~~~~~~~~~~~ 2023-02-17T11:47:38,476 p7_gmx_Create 2023-02-17T11:47:38,477 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2023-02-17T11:47:38,477 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2023-02-17T11:47:38,477 ^ 2023-02-17T11:47:38,478 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2023-02-17T11:47:38,498 oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2023-02-17T11:47:38,499 ^ 2023-02-17T11:47:38,500 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,501 p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2023-02-17T11:47:38,502 ^~~~~~~~~~~~~ 2023-02-17T11:47:38,502 p7_gmx_GrowTo 2023-02-17T11:47:38,503 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,503 p7_oprofile_ReconfigLength(om, sq[idx]->n); 2023-02-17T11:47:38,504 ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,504 p7_ReconfigLength 2023-02-17T11:47:38,505 In file included from vendor/hmmer/src/p7_domain.c:16: 2023-02-17T11:47:38,506 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-02-17T11:47:38,506 #error "No vector implementation enabled" 2023-02-17T11:47:38,507 ^~~~~ 2023-02-17T11:47:38,518 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,519 p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2023-02-17T11:47:38,519 ^~~~~~~~~~ 2023-02-17T11:47:38,520 p7_GForward 2023-02-17T11:47:38,520 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,521 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-02-17T11:47:38,521 ^~~~~~ 2023-02-17T11:47:38,522 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,523 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-02-17T11:47:38,523 ^~~~~~ 2023-02-17T11:47:38,524 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,524 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-02-17T11:47:38,525 ^~~~~~ 2023-02-17T11:47:38,526 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,526 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-02-17T11:47:38,527 ^~~~~~ 2023-02-17T11:47:38,527 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,528 p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2023-02-17T11:47:38,539 ^~~~~~~~~~~ 2023-02-17T11:47:38,539 p7_GBackward 2023-02-17T11:47:38,540 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,540 status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2023-02-17T11:47:38,541 ^~~~~~~~~~~ 2023-02-17T11:47:38,541 p7_GDecoding 2023-02-17T11:47:38,542 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,543 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-02-17T11:47:38,543 ^~~~~~~~~~~ 2023-02-17T11:47:38,544 P7_PROFILE 2023-02-17T11:47:38,544 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,545 p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2023-02-17T11:47:38,545 ^~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,546 p7_GOptimalAccuracy 2023-02-17T11:47:38,547 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,547 p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2023-02-17T11:47:38,548 ^~~~~~~~~~ 2023-02-17T11:47:38,548 p7_GOATrace 2023-02-17T11:47:38,549 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,550 p7_omx_Reuse(oxf); 2023-02-17T11:47:38,551 ^~~~~~~~~~~~ 2023-02-17T11:47:38,551 p7_gmx_Reuse 2023-02-17T11:47:38,552 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,552 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-02-17T11:47:38,553 ^~~~~~~~~~~ 2023-02-17T11:47:38,553 P7_PROFILE 2023-02-17T11:47:38,554 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,554 p7_omx_Destroy(oxf); 2023-02-17T11:47:38,555 ^~~~~~~~~~~~~~ 2023-02-17T11:47:38,556 p7_gmx_Destroy 2023-02-17T11:47:38,557 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,557 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-02-17T11:47:38,558 ^~~~~~~~~~~ 2023-02-17T11:47:38,558 P7_PROFILE 2023-02-17T11:47:38,559 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,560 p7_oprofile_Destroy(om); 2023-02-17T11:47:38,560 ^~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,561 p7_profile_Destroy 2023-02-17T11:47:38,561 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,562 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-02-17T11:47:38,562 ^~~~~~~~~~~ 2023-02-17T11:47:38,563 P7_PROFILE 2023-02-17T11:47:38,564 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,564 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-02-17T11:47:38,565 ^~~~~~~~~~~ 2023-02-17T11:47:38,565 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,566 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-02-17T11:47:38,566 ^~~~~~~~~~~ 2023-02-17T11:47:38,567 P7_PROFILE 2023-02-17T11:47:38,568 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,568 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-02-17T11:47:38,569 ^~~~~~~~~~~ 2023-02-17T11:47:38,569 P7_PROFILE 2023-02-17T11:47:38,570 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,571 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,572 ^~~~~~~~~~~ 2023-02-17T11:47:38,573 P7_PROFILE 2023-02-17T11:47:38,574 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,575 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,575 ^~~~~~ 2023-02-17T11:47:38,576 P7_GMX 2023-02-17T11:47:38,577 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,577 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,578 ^~~~~~ 2023-02-17T11:47:38,579 P7_GMX 2023-02-17T11:47:38,579 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,580 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,580 ^~~~~~ 2023-02-17T11:47:38,581 P7_GMX 2023-02-17T11:47:38,601 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,602 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,602 ^~~~~~ 2023-02-17T11:47:38,602 P7_GMX 2023-02-17T11:47:38,606 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,607 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-02-17T11:47:38,608 ^~~~~~~~~~~ 2023-02-17T11:47:38,608 P7_PROFILE 2023-02-17T11:47:38,610 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,610 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-02-17T11:47:38,611 ^~~~~~~~~~~ 2023-02-17T11:47:38,612 P7_PROFILE 2023-02-17T11:47:38,613 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,614 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-02-17T11:47:38,614 ^~~~~~~~~~~ 2023-02-17T11:47:38,615 P7_PROFILE 2023-02-17T11:47:38,616 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,617 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-02-17T11:47:38,617 ^~~~~~~~~~~ 2023-02-17T11:47:38,618 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,618 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-02-17T11:47:38,619 ^~~~~~~~~~~ 2023-02-17T11:47:38,620 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,620 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-02-17T11:47:38,621 ^~~~~~~~~~~ 2023-02-17T11:47:38,621 P7_PROFILE 2023-02-17T11:47:38,631 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,631 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-02-17T11:47:38,632 ^~~~~~~~~~~ 2023-02-17T11:47:38,632 P7_PROFILE 2023-02-17T11:47:38,638 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,639 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-02-17T11:47:38,639 ^~~~~~~~~~~ 2023-02-17T11:47:38,639 P7_PROFILE 2023-02-17T11:47:38,655 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2023-02-17T11:47:38,655 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-02-17T11:47:38,656 network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2023-02-17T11:47:38,656 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,657 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-02-17T11:47:38,657 network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2023-02-17T11:47:38,658 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,658 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-02-17T11:47:38,659 network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2023-02-17T11:47:38,659 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,659 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-02-17T11:47:38,660 network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2023-02-17T11:47:38,660 ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,661 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-02-17T11:47:38,661 network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2023-02-17T11:47:38,662 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,662 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-02-17T11:47:38,663 network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2023-02-17T11:47:38,664 ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,664 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:38,665 if (ser_size != ptr - (*buf + *n)){ 2023-02-17T11:47:38,666 ^~ 2023-02-17T11:47:38,666 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2023-02-17T11:47:38,667 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-02-17T11:47:38,668 ret_obj->envsc = *((float *) &host_32bit); 2023-02-17T11:47:38,678 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,679 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-02-17T11:47:38,680 ret_obj->domcorrection = *((float *) &host_32bit); 2023-02-17T11:47:38,680 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,681 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-02-17T11:47:38,681 ret_obj->dombias = *((float *) &host_32bit); 2023-02-17T11:47:38,682 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,682 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-02-17T11:47:38,683 ret_obj->oasc = *((float *) &host_32bit); 2023-02-17T11:47:38,683 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,684 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-02-17T11:47:38,684 ret_obj->bitscore = *((float *) &host_32bit); 2023-02-17T11:47:38,685 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,685 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-02-17T11:47:38,686 ret_obj->lnP = *((double *) &host_64bit); 2023-02-17T11:47:38,686 ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,686 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-02-17T11:47:38,687 ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2023-02-17T11:47:38,687 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,698 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:38,699 if(ptr - (buf + *n) != obj_size){ 2023-02-17T11:47:38,700 ^~ 2023-02-17T11:47:38,703 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2023-02-17T11:47:38,705 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o 2023-02-17T11:47:38,726 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2023-02-17T11:47:38,727 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o 2023-02-17T11:47:38,798 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2023-02-17T11:47:38,798 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-02-17T11:47:38,799 #error "No vector implementation enabled" 2023-02-17T11:47:38,799 ^~~~~ 2023-02-17T11:47:38,800 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,801 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-02-17T11:47:38,801 ^~~~~~ 2023-02-17T11:47:38,802 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,803 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-02-17T11:47:38,803 ^~~~~~ 2023-02-17T11:47:38,804 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,805 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-02-17T11:47:38,806 ^~~~~~ 2023-02-17T11:47:38,806 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,806 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-02-17T11:47:38,807 ^~~~~~ 2023-02-17T11:47:38,808 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,809 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-02-17T11:47:38,809 ^~~~~~~~~~~ 2023-02-17T11:47:38,809 P7_PROFILE 2023-02-17T11:47:38,810 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,811 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-02-17T11:47:38,812 ^~~~~~~~~~~ 2023-02-17T11:47:38,812 P7_PROFILE 2023-02-17T11:47:38,818 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,819 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-02-17T11:47:38,819 ^~~~~~~~~~~ 2023-02-17T11:47:38,820 P7_PROFILE 2023-02-17T11:47:38,820 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,821 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-02-17T11:47:38,821 ^~~~~~~~~~~ 2023-02-17T11:47:38,821 P7_PROFILE 2023-02-17T11:47:38,822 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2023-02-17T11:47:38,822 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-02-17T11:47:38,823 #error "No vector implementation enabled" 2023-02-17T11:47:38,824 ^~~~~ 2023-02-17T11:47:38,824 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,825 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-02-17T11:47:38,825 ^~~~~~~~~~~ 2023-02-17T11:47:38,827 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,827 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-02-17T11:47:38,828 ^~~~~~ 2023-02-17T11:47:38,839 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,840 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-02-17T11:47:38,840 ^~~~~~ 2023-02-17T11:47:38,841 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,841 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-02-17T11:47:38,843 ^~~~~~ 2023-02-17T11:47:38,843 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:38,844 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-02-17T11:47:38,844 ^~~~~~ 2023-02-17T11:47:38,845 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,846 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-02-17T11:47:38,847 ^~~~~~~~~~~ 2023-02-17T11:47:38,847 P7_PROFILE 2023-02-17T11:47:38,869 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,870 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-02-17T11:47:38,871 ^~~~~~~~~~~ 2023-02-17T11:47:38,872 P7_PROFILE 2023-02-17T11:47:38,872 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,873 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-02-17T11:47:38,873 ^~~~~~~~~~~ 2023-02-17T11:47:38,874 P7_PROFILE 2023-02-17T11:47:38,874 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,875 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-02-17T11:47:38,876 ^~~~~~~~~~~ 2023-02-17T11:47:38,876 P7_PROFILE 2023-02-17T11:47:38,877 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,877 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,878 ^~~~~~~~~~~ 2023-02-17T11:47:38,888 P7_PROFILE 2023-02-17T11:47:38,889 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,890 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-02-17T11:47:38,891 ^~~~~~~~~~~ 2023-02-17T11:47:38,892 P7_PROFILE 2023-02-17T11:47:38,892 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,893 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,893 ^~~~~~ 2023-02-17T11:47:38,894 P7_GMX 2023-02-17T11:47:38,894 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,895 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-02-17T11:47:38,896 ^~~~~~~~~~~ 2023-02-17T11:47:38,896 P7_PROFILE 2023-02-17T11:47:38,896 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,897 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,898 ^~~~~~ 2023-02-17T11:47:38,899 P7_GMX 2023-02-17T11:47:38,899 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,900 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-02-17T11:47:38,900 ^~~~~~~~~~~ 2023-02-17T11:47:38,901 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,902 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,904 ^~~~~~ 2023-02-17T11:47:38,904 P7_GMX 2023-02-17T11:47:38,905 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,906 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,907 ^~~~~~ 2023-02-17T11:47:38,907 P7_GMX 2023-02-17T11:47:38,908 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,908 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-02-17T11:47:38,909 ^~~~~~~~~~~ 2023-02-17T11:47:38,909 P7_PROFILE 2023-02-17T11:47:38,910 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,910 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-02-17T11:47:38,911 ^~~~~~~~~~~ 2023-02-17T11:47:38,912 P7_PROFILE 2023-02-17T11:47:38,913 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,913 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-02-17T11:47:38,914 ^~~~~~~~~~~ 2023-02-17T11:47:38,915 P7_PROFILE 2023-02-17T11:47:38,915 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,916 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,917 ^~~~~~~~~~~ 2023-02-17T11:47:38,917 P7_PROFILE 2023-02-17T11:47:38,918 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,918 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-02-17T11:47:38,919 ^~~~~~~~~~~ 2023-02-17T11:47:38,919 P7_PROFILE 2023-02-17T11:47:38,919 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,920 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,921 ^~~~~~ 2023-02-17T11:47:38,921 P7_GMX 2023-02-17T11:47:38,922 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,922 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-02-17T11:47:38,923 ^~~~~~~~~~~ 2023-02-17T11:47:38,923 P7_PROFILE 2023-02-17T11:47:38,924 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,924 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,925 ^~~~~~ 2023-02-17T11:47:38,925 P7_GMX 2023-02-17T11:47:38,926 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,926 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-02-17T11:47:38,927 ^~~~~~~~~~~ 2023-02-17T11:47:38,927 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,927 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-02-17T11:47:38,928 ^~~~~~~~~~~ 2023-02-17T11:47:38,928 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,929 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,929 ^~~~~~ 2023-02-17T11:47:38,930 P7_GMX 2023-02-17T11:47:38,930 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,930 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-02-17T11:47:38,931 ^~~~~~~~~~~ 2023-02-17T11:47:38,931 P7_PROFILE 2023-02-17T11:47:38,932 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:38,932 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:38,932 ^~~~~~ 2023-02-17T11:47:38,933 P7_GMX 2023-02-17T11:47:38,933 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,933 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-02-17T11:47:38,934 ^~~~~~~~~~~ 2023-02-17T11:47:38,934 P7_PROFILE 2023-02-17T11:47:38,934 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,935 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-02-17T11:47:38,935 ^~~~~~~~~~~ 2023-02-17T11:47:38,936 P7_PROFILE 2023-02-17T11:47:38,936 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,937 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-02-17T11:47:38,937 ^~~~~~~~~~~ 2023-02-17T11:47:38,938 P7_PROFILE 2023-02-17T11:47:38,939 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,939 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-02-17T11:47:38,939 ^~~~~~~~~~~ 2023-02-17T11:47:38,940 P7_PROFILE 2023-02-17T11:47:38,940 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,940 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-02-17T11:47:38,941 ^~~~~~~~~~~ 2023-02-17T11:47:38,942 P7_PROFILE 2023-02-17T11:47:38,943 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,943 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-02-17T11:47:38,943 ^~~~~~~~~~~ 2023-02-17T11:47:38,944 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,945 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-02-17T11:47:38,945 ^~~~~~~~~~~ 2023-02-17T11:47:38,946 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,947 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-02-17T11:47:38,947 ^~~~~~~~~~~ 2023-02-17T11:47:38,948 P7_PROFILE 2023-02-17T11:47:38,949 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,950 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-02-17T11:47:38,950 ^~~~~~~~~~~ 2023-02-17T11:47:38,951 P7_PROFILE 2023-02-17T11:47:38,951 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,952 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-02-17T11:47:38,953 ^~~~~~~~~~~ 2023-02-17T11:47:38,954 P7_PROFILE 2023-02-17T11:47:38,955 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2023-02-17T11:47:38,956 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:38,956 P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2023-02-17T11:47:38,957 ^~~~~~~~~~~ 2023-02-17T11:47:38,957 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2023-02-17T11:47:38,958 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,959 P7_OPROFILE *om = NULL; /* target profile */ 2023-02-17T11:47:38,960 ^~~~~~~~~~~ 2023-02-17T11:47:38,961 P7_PROFILE 2023-02-17T11:47:38,961 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2023-02-17T11:47:38,962 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2023-02-17T11:47:38,962 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-02-17T11:47:38,963 ^~~~~~~~~~~ 2023-02-17T11:47:38,964 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2023-02-17T11:47:38,964 if ( size <= 0 ) { \ 2023-02-17T11:47:38,965 ^~~~ 2023-02-17T11:47:38,966 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2023-02-17T11:47:38,967 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-02-17T11:47:38,967 ^~~~~~~~~~~ 2023-02-17T11:47:38,968 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2023-02-17T11:47:38,969 if ( size <= 0 ) { \ 2023-02-17T11:47:38,969 ^~~~ 2023-02-17T11:47:38,970 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2023-02-17T11:47:38,970 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-02-17T11:47:38,971 ^ 2023-02-17T11:47:38,971 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2023-02-17T11:47:38,972 if ( size <= 0 ) { \ 2023-02-17T11:47:38,972 ^~~~ 2023-02-17T11:47:38,973 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2023-02-17T11:47:38,973 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-02-17T11:47:38,974 ^ 2023-02-17T11:47:38,975 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2023-02-17T11:47:38,975 if ( ((p) = malloc(size)) == NULL) { \ 2023-02-17T11:47:38,976 ^~~~ 2023-02-17T11:47:38,977 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2023-02-17T11:47:38,977 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-02-17T11:47:38,988 ^ 2023-02-17T11:47:38,989 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2023-02-17T11:47:38,990 esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2023-02-17T11:47:38,990 ^~~~ 2023-02-17T11:47:38,991 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2023-02-17T11:47:38,992 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o 2023-02-17T11:47:38,992 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,993 while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2023-02-17T11:47:38,993 ^~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,994 p7_profile_Reuse 2023-02-17T11:47:38,994 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,995 if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2023-02-17T11:47:38,996 ^~~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:38,996 p7_profile_Reuse 2023-02-17T11:47:38,997 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2023-02-17T11:47:38,997 if (om) p7_oprofile_Destroy(om); 2023-02-17T11:47:38,998 ^~~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:39,008 p7_profile_Destroy 2023-02-17T11:47:39,008 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2023-02-17T11:47:39,008 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,009 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2023-02-17T11:47:39,009 ^~~~~~~~~~~ 2023-02-17T11:47:39,010 P7_PROFILE 2023-02-17T11:47:39,010 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2023-02-17T11:47:39,010 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2023-02-17T11:47:39,011 ^ 2023-02-17T11:47:39,011 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:39,012 for (i = 0; i < cache->n; i++) 2023-02-17T11:47:39,012 ^ 2023-02-17T11:47:39,013 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2023-02-17T11:47:39,013 n += p7_oprofile_Sizeof(cache->list[i]); 2023-02-17T11:47:39,013 ^~~~~~~~~~~~~~~~~~ 2023-02-17T11:47:39,014 p7_profile_Sizeof 2023-02-17T11:47:39,014 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2023-02-17T11:47:39,015 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,015 P7_OPROFILE *om; 2023-02-17T11:47:39,015 ^~~~~~~~~~~ 2023-02-17T11:47:39,016 P7_PROFILE 2023-02-17T11:47:39,016 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:39,017 for (i = 0; i < cache->n; i++) 2023-02-17T11:47:39,018 ^ 2023-02-17T11:47:39,025 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2023-02-17T11:47:39,026 if (om->name) free(om->name); 2023-02-17T11:47:39,027 ^~ 2023-02-17T11:47:39,027 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2023-02-17T11:47:39,028 if (om->name) free(om->name); 2023-02-17T11:47:39,028 ^~ 2023-02-17T11:47:39,028 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2023-02-17T11:47:39,029 if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2023-02-17T11:47:39,029 ^~ 2023-02-17T11:47:39,030 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2023-02-17T11:47:39,030 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:39,031 for (i = 0; i < cache->n; i++) 2023-02-17T11:47:39,031 ^ 2023-02-17T11:47:39,175 In file included from vendor/hmmer/src/p7_prior.c:11: 2023-02-17T11:47:39,176 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-02-17T11:47:39,177 #error "No vector implementation enabled" 2023-02-17T11:47:39,177 ^~~~~ 2023-02-17T11:47:39,179 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:39,179 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-02-17T11:47:39,180 ^~~~~~ 2023-02-17T11:47:39,180 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:39,181 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-02-17T11:47:39,181 ^~~~~~ 2023-02-17T11:47:39,182 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:39,183 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-02-17T11:47:39,183 ^~~~~~ 2023-02-17T11:47:39,184 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:39,184 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-02-17T11:47:39,185 ^~~~~~ 2023-02-17T11:47:39,186 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,187 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-02-17T11:47:39,188 ^~~~~~~~~~~ 2023-02-17T11:47:39,189 P7_PROFILE 2023-02-17T11:47:39,189 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,190 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-02-17T11:47:39,190 ^~~~~~~~~~~ 2023-02-17T11:47:39,191 P7_PROFILE 2023-02-17T11:47:39,192 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,193 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-02-17T11:47:39,193 ^~~~~~~~~~~ 2023-02-17T11:47:39,193 P7_PROFILE 2023-02-17T11:47:39,194 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,194 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-02-17T11:47:39,195 ^~~~~~~~~~~ 2023-02-17T11:47:39,195 P7_PROFILE 2023-02-17T11:47:39,197 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:39,198 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-02-17T11:47:39,198 ^~~~~~~~~~~ 2023-02-17T11:47:39,202 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,203 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-02-17T11:47:39,204 ^~~~~~~~~~~ 2023-02-17T11:47:39,204 P7_PROFILE 2023-02-17T11:47:39,205 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,206 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-02-17T11:47:39,206 ^~~~~~~~~~~ 2023-02-17T11:47:39,207 P7_PROFILE 2023-02-17T11:47:39,209 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,210 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:39,211 ^~~~~~~~~~~ 2023-02-17T11:47:39,211 P7_PROFILE 2023-02-17T11:47:39,212 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:39,213 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:39,214 ^~~~~~ 2023-02-17T11:47:39,215 P7_GMX 2023-02-17T11:47:39,216 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:39,216 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:39,217 ^~~~~~ 2023-02-17T11:47:39,217 P7_GMX 2023-02-17T11:47:39,219 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:39,220 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:39,220 ^~~~~~ 2023-02-17T11:47:39,221 P7_GMX 2023-02-17T11:47:39,222 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:39,222 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:39,223 ^~~~~~ 2023-02-17T11:47:39,223 P7_GMX 2023-02-17T11:47:39,227 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,229 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-02-17T11:47:39,229 ^~~~~~~~~~~ 2023-02-17T11:47:39,230 P7_PROFILE 2023-02-17T11:47:39,231 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,232 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-02-17T11:47:39,232 ^~~~~~~~~~~ 2023-02-17T11:47:39,233 P7_PROFILE 2023-02-17T11:47:39,235 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,236 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-02-17T11:47:39,237 ^~~~~~~~~~~ 2023-02-17T11:47:39,237 P7_PROFILE 2023-02-17T11:47:39,249 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:39,250 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-02-17T11:47:39,251 ^~~~~~~~~~~ 2023-02-17T11:47:39,251 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:39,252 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-02-17T11:47:39,253 ^~~~~~~~~~~ 2023-02-17T11:47:39,254 In file included from vendor/hmmer/src/p7_trace.c:22: 2023-02-17T11:47:39,255 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-02-17T11:47:39,255 #error "No vector implementation enabled" 2023-02-17T11:47:39,255 ^~~~~ 2023-02-17T11:47:39,256 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,257 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-02-17T11:47:39,258 ^~~~~~~~~~~ 2023-02-17T11:47:39,258 P7_PROFILE 2023-02-17T11:47:39,259 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:39,259 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-02-17T11:47:39,260 ^~~~~~ 2023-02-17T11:47:39,260 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:39,261 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-02-17T11:47:39,261 ^~~~~~ 2023-02-17T11:47:39,261 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:39,262 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-02-17T11:47:39,263 ^~~~~~ 2023-02-17T11:47:39,263 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,264 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-02-17T11:47:39,264 ^~~~~~~~~~~ 2023-02-17T11:47:39,264 P7_PROFILE 2023-02-17T11:47:39,265 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:39,265 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-02-17T11:47:39,266 ^~~~~~ 2023-02-17T11:47:39,267 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,267 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-02-17T11:47:39,268 ^~~~~~~~~~~ 2023-02-17T11:47:39,269 P7_PROFILE 2023-02-17T11:47:39,270 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,270 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-02-17T11:47:39,271 ^~~~~~~~~~~ 2023-02-17T11:47:39,272 P7_PROFILE 2023-02-17T11:47:39,273 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,274 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-02-17T11:47:39,275 ^~~~~~~~~~~ 2023-02-17T11:47:39,276 P7_PROFILE 2023-02-17T11:47:39,277 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,278 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-02-17T11:47:39,280 ^~~~~~~~~~~ 2023-02-17T11:47:39,281 P7_PROFILE 2023-02-17T11:47:39,284 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,285 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-02-17T11:47:39,286 ^~~~~~~~~~~ 2023-02-17T11:47:39,286 P7_PROFILE 2023-02-17T11:47:39,287 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:39,288 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-02-17T11:47:39,288 ^~~~~~~~~~~ 2023-02-17T11:47:39,289 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,290 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-02-17T11:47:39,290 ^~~~~~~~~~~ 2023-02-17T11:47:39,291 P7_PROFILE 2023-02-17T11:47:39,291 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,292 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-02-17T11:47:39,292 ^~~~~~~~~~~ 2023-02-17T11:47:39,293 P7_PROFILE 2023-02-17T11:47:39,293 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,294 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:39,295 ^~~~~~~~~~~ 2023-02-17T11:47:39,295 P7_PROFILE 2023-02-17T11:47:39,296 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:39,297 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:39,298 ^~~~~~ 2023-02-17T11:47:39,298 P7_GMX 2023-02-17T11:47:39,299 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:39,300 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:39,300 ^~~~~~ 2023-02-17T11:47:39,301 P7_GMX 2023-02-17T11:47:39,302 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:39,303 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:39,304 ^~~~~~ 2023-02-17T11:47:39,304 P7_GMX 2023-02-17T11:47:39,305 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:39,306 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:39,306 ^~~~~~ 2023-02-17T11:47:39,307 P7_GMX 2023-02-17T11:47:39,308 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,308 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-02-17T11:47:39,309 ^~~~~~~~~~~ 2023-02-17T11:47:39,309 P7_PROFILE 2023-02-17T11:47:39,310 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,311 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-02-17T11:47:39,312 ^~~~~~~~~~~ 2023-02-17T11:47:39,312 P7_PROFILE 2023-02-17T11:47:39,312 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,313 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-02-17T11:47:39,313 ^~~~~~~~~~~ 2023-02-17T11:47:39,314 P7_PROFILE 2023-02-17T11:47:39,314 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:39,315 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-02-17T11:47:39,315 ^~~~~~~~~~~ 2023-02-17T11:47:39,315 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:39,316 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-02-17T11:47:39,317 ^~~~~~~~~~~ 2023-02-17T11:47:39,317 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,318 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-02-17T11:47:39,319 ^~~~~~~~~~~ 2023-02-17T11:47:39,319 P7_PROFILE 2023-02-17T11:47:39,320 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,321 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-02-17T11:47:39,322 ^~~~~~~~~~~ 2023-02-17T11:47:39,322 P7_PROFILE 2023-02-17T11:47:39,324 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,325 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-02-17T11:47:39,326 ^~~~~~~~~~~ 2023-02-17T11:47:39,327 P7_PROFILE 2023-02-17T11:47:39,374 In file included from vendor/hmmer/src/fm_general.c:14: 2023-02-17T11:47:39,375 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-02-17T11:47:39,376 #error "No vector implementation enabled" 2023-02-17T11:47:39,376 ^~~~~ 2023-02-17T11:47:39,377 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:39,377 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-02-17T11:47:39,378 ^~~~~~ 2023-02-17T11:47:39,378 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:39,379 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-02-17T11:47:39,379 ^~~~~~ 2023-02-17T11:47:39,380 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:39,380 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-02-17T11:47:39,381 ^~~~~~ 2023-02-17T11:47:39,381 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-02-17T11:47:39,381 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-02-17T11:47:39,382 ^~~~~~ 2023-02-17T11:47:39,383 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,383 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-02-17T11:47:39,384 ^~~~~~~~~~~ 2023-02-17T11:47:39,384 P7_PROFILE 2023-02-17T11:47:39,385 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,386 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-02-17T11:47:39,386 ^~~~~~~~~~~ 2023-02-17T11:47:39,387 P7_PROFILE 2023-02-17T11:47:39,388 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,389 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-02-17T11:47:39,390 ^~~~~~~~~~~ 2023-02-17T11:47:39,390 P7_PROFILE 2023-02-17T11:47:39,391 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,391 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-02-17T11:47:39,392 ^~~~~~~~~~~ 2023-02-17T11:47:39,392 P7_PROFILE 2023-02-17T11:47:39,394 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:39,395 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-02-17T11:47:39,395 ^~~~~~~~~~~ 2023-02-17T11:47:39,399 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,400 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-02-17T11:47:39,401 ^~~~~~~~~~~ 2023-02-17T11:47:39,401 P7_PROFILE 2023-02-17T11:47:39,403 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,403 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-02-17T11:47:39,404 ^~~~~~~~~~~ 2023-02-17T11:47:39,404 P7_PROFILE 2023-02-17T11:47:39,406 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,407 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:39,408 ^~~~~~~~~~~ 2023-02-17T11:47:39,408 P7_PROFILE 2023-02-17T11:47:39,410 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:39,411 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:39,411 ^~~~~~ 2023-02-17T11:47:39,412 P7_GMX 2023-02-17T11:47:39,413 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:39,414 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:39,414 ^~~~~~ 2023-02-17T11:47:39,415 P7_GMX 2023-02-17T11:47:39,416 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:39,417 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:39,417 ^~~~~~ 2023-02-17T11:47:39,418 P7_GMX 2023-02-17T11:47:39,419 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-02-17T11:47:39,419 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-02-17T11:47:39,420 ^~~~~~ 2023-02-17T11:47:39,420 P7_GMX 2023-02-17T11:47:39,424 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,425 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-02-17T11:47:39,426 ^~~~~~~~~~~ 2023-02-17T11:47:39,426 P7_PROFILE 2023-02-17T11:47:39,428 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,429 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-02-17T11:47:39,430 ^~~~~~~~~~~ 2023-02-17T11:47:39,430 P7_PROFILE 2023-02-17T11:47:39,432 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,432 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-02-17T11:47:39,433 ^~~~~~~~~~~ 2023-02-17T11:47:39,434 P7_PROFILE 2023-02-17T11:47:39,434 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:39,435 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-02-17T11:47:39,435 ^~~~~~~~~~~ 2023-02-17T11:47:39,436 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-02-17T11:47:39,436 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-02-17T11:47:39,437 ^~~~~~~~~~~ 2023-02-17T11:47:39,438 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,438 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-02-17T11:47:39,439 ^~~~~~~~~~~ 2023-02-17T11:47:39,439 P7_PROFILE 2023-02-17T11:47:39,439 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,440 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-02-17T11:47:39,440 ^~~~~~~~~~~ 2023-02-17T11:47:39,441 P7_PROFILE 2023-02-17T11:47:39,447 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-02-17T11:47:39,447 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-02-17T11:47:39,448 ^~~~~~~~~~~ 2023-02-17T11:47:39,448 P7_PROFILE 2023-02-17T11:47:39,457 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2023-02-17T11:47:39,457 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:39,458 if (ranges[lo].lower > end) return -1; 2023-02-17T11:47:39,458 ^ 2023-02-17T11:47:39,459 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:39,459 if (ranges[hi].upper < start) return -1; 2023-02-17T11:47:39,459 ^ 2023-02-17T11:47:39,460 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:39,460 if (ranges[mid].lower < start) lo = mid + 1; // too far left 2023-02-17T11:47:39,461 ^ 2023-02-17T11:47:39,461 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:39,461 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2023-02-17T11:47:39,462 ^~ 2023-02-17T11:47:39,462 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:39,463 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2023-02-17T11:47:39,463 ^~ 2023-02-17T11:47:39,464 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:39,464 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2023-02-17T11:47:39,464 ^~ 2023-02-17T11:47:39,465 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:39,465 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2023-02-17T11:47:39,465 ^~ 2023-02-17T11:47:39,466 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2023-02-17T11:47:39,466 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-02-17T11:47:39,467 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2023-02-17T11:47:39,467 ^~ 2023-02-17T11:47:39,468 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-02-17T11:47:39,468 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2023-02-17T11:47:39,468 ^~ 2023-02-17T11:47:39,469 In file included from vendor/hmmer/src/fm_general.c:12: 2023-02-17T11:47:39,469 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:39,470 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-02-17T11:47:39,470 ^ 2023-02-17T11:47:39,470 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2023-02-17T11:47:39,471 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2023-02-17T11:47:39,471 ^~~~~~~ 2023-02-17T11:47:39,472 vendor/easel/easel.h:417:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-02-17T11:47:39,472 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-02-17T11:47:39,472 ^~~ 2023-02-17T11:47:39,473 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2023-02-17T11:47:39,473 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2023-02-17T11:47:39,473 ^~~~~~~ 2023-02-17T11:47:39,474 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:39,474 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-02-17T11:47:39,475 ^ 2023-02-17T11:47:39,475 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2023-02-17T11:47:39,475 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2023-02-17T11:47:39,476 ^~~~~~~ 2023-02-17T11:47:39,476 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-02-17T11:47:39,477 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-02-17T11:47:39,477 ^~~ 2023-02-17T11:47:39,477 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2023-02-17T11:47:39,478 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2023-02-17T11:47:39,478 ^~~~~~~ 2023-02-17T11:47:39,479 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:39,479 for (j= start; j<=end; j++) 2023-02-17T11:47:39,479 ^~ 2023-02-17T11:47:39,480 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2023-02-17T11:47:39,480 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-02-17T11:47:39,481 (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2023-02-17T11:47:39,481 ^~ 2023-02-17T11:47:39,481 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-02-17T11:47:39,482 (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2023-02-17T11:47:39,482 ^~ 2023-02-17T11:47:39,484 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2023-02-17T11:47:39,484 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:39,485 for (i=0; iseq_count; i++) { 2023-02-17T11:47:39,485 ^ 2023-02-17T11:47:39,489 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:39,490 fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2023-02-17T11:47:39,490 ^~ 2023-02-17T11:47:39,491 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:39,491 fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2023-02-17T11:47:39,491 ^~ 2023-02-17T11:47:39,492 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:39,492 fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2023-02-17T11:47:39,493 ^~ 2023-02-17T11:47:39,493 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-17T11:47:39,493 fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2023-02-17T11:47:39,494 ^~ 2023-02-17T11:47:39,494 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:39,495 for (i=0; iambig_list->count; i++) { 2023-02-17T11:47:39,495 ^ 2023-02-17T11:47:39,496 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:39,496 for (i=0; iseq_count; i++) 2023-02-17T11:47:39,497 ^ 2023-02-17T11:47:39,498 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2023-02-17T11:47:39,499 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-17T11:47:39,499 for (i=0; iseq_count; i++) { 2023-02-17T11:47:39,499 ^ 2023-02-17T11:47:39,595 /tmp/pip-build-env-ibzlsdze/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.jackhmmer' as data is deprecated, please list it in `packages`. 2023-02-17T11:47:39,596 !! 2023-02-17T11:47:39,597 ############################ 2023-02-17T11:47:39,597 # Package would be ignored # 2023-02-17T11:47:39,597 ############################ 2023-02-17T11:47:39,598 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package, 2023-02-17T11:47:39,598 but it is not listed in the `packages` configuration of setuptools. 2023-02-17T11:47:39,599 'pyhmmer.tests.data.jackhmmer' has been automatically added to the distribution only 2023-02-17T11:47:39,599 because it may contain data files, but this behavior is likely to change 2023-02-17T11:47:39,599 in future versions of setuptools (and therefore is considered deprecated). 2023-02-17T11:47:39,600 Please make sure that 'pyhmmer.tests.data.jackhmmer' is included as a package by using 2023-02-17T11:47:39,600 the `packages` configuration field or the proper discovery methods 2023-02-17T11:47:39,601 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-17T11:47:39,601 instead of `find_packages(...)`/`find:`). 2023-02-17T11:47:39,601 You can read more about "package discovery" and "data files" on setuptools 2023-02-17T11:47:39,602 documentation page. 2023-02-17T11:47:39,603 !! 2023-02-17T11:47:39,603 check.warn(importable) 2023-02-17T11:47:39,603 /tmp/pip-build-env-ibzlsdze/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.msa' as data is deprecated, please list it in `packages`. 2023-02-17T11:47:39,604 !! 2023-02-17T11:47:39,605 ############################ 2023-02-17T11:47:39,605 # Package would be ignored # 2023-02-17T11:47:39,605 ############################ 2023-02-17T11:47:39,606 Python recognizes 'pyhmmer.tests.data.msa' as an importable package, 2023-02-17T11:47:39,606 but it is not listed in the `packages` configuration of setuptools. 2023-02-17T11:47:39,606 'pyhmmer.tests.data.msa' has been automatically added to the distribution only 2023-02-17T11:47:39,607 because it may contain data files, but this behavior is likely to change 2023-02-17T11:47:39,607 in future versions of setuptools (and therefore is considered deprecated). 2023-02-17T11:47:39,608 Please make sure that 'pyhmmer.tests.data.msa' is included as a package by using 2023-02-17T11:47:39,608 the `packages` configuration field or the proper discovery methods 2023-02-17T11:47:39,608 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-17T11:47:39,609 instead of `find_packages(...)`/`find:`). 2023-02-17T11:47:39,610 You can read more about "package discovery" and "data files" on setuptools 2023-02-17T11:47:39,610 documentation page. 2023-02-17T11:47:39,612 !! 2023-02-17T11:47:39,612 check.warn(importable) 2023-02-17T11:47:39,613 /tmp/pip-build-env-ibzlsdze/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.seqs' as data is deprecated, please list it in `packages`. 2023-02-17T11:47:39,613 !! 2023-02-17T11:47:39,615 ############################ 2023-02-17T11:47:39,615 # Package would be ignored # 2023-02-17T11:47:39,615 ############################ 2023-02-17T11:47:39,616 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package, 2023-02-17T11:47:39,616 but it is not listed in the `packages` configuration of setuptools. 2023-02-17T11:47:39,617 'pyhmmer.tests.data.seqs' has been automatically added to the distribution only 2023-02-17T11:47:39,618 because it may contain data files, but this behavior is likely to change 2023-02-17T11:47:39,618 in future versions of setuptools (and therefore is considered deprecated). 2023-02-17T11:47:39,619 Please make sure that 'pyhmmer.tests.data.seqs' is included as a package by using 2023-02-17T11:47:39,620 the `packages` configuration field or the proper discovery methods 2023-02-17T11:47:39,620 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-17T11:47:39,620 instead of `find_packages(...)`/`find:`). 2023-02-17T11:47:39,621 You can read more about "package discovery" and "data files" on setuptools 2023-02-17T11:47:39,622 documentation page. 2023-02-17T11:47:39,623 !! 2023-02-17T11:47:39,624 check.warn(importable) 2023-02-17T11:47:39,624 /tmp/pip-build-env-ibzlsdze/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.tables' as data is deprecated, please list it in `packages`. 2023-02-17T11:47:39,624 !! 2023-02-17T11:47:39,626 ############################ 2023-02-17T11:47:39,626 # Package would be ignored # 2023-02-17T11:47:39,626 ############################ 2023-02-17T11:47:39,627 Python recognizes 'pyhmmer.tests.data.tables' as an importable package, 2023-02-17T11:47:39,627 but it is not listed in the `packages` configuration of setuptools. 2023-02-17T11:47:39,628 'pyhmmer.tests.data.tables' has been automatically added to the distribution only 2023-02-17T11:47:39,628 because it may contain data files, but this behavior is likely to change 2023-02-17T11:47:39,629 in future versions of setuptools (and therefore is considered deprecated). 2023-02-17T11:47:39,630 Please make sure that 'pyhmmer.tests.data.tables' is included as a package by using 2023-02-17T11:47:39,630 the `packages` configuration field or the proper discovery methods 2023-02-17T11:47:39,630 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-17T11:47:39,631 instead of `find_packages(...)`/`find:`). 2023-02-17T11:47:39,632 You can read more about "package discovery" and "data files" on setuptools 2023-02-17T11:47:39,632 documentation page. 2023-02-17T11:47:39,634 !! 2023-02-17T11:47:39,635 check.warn(importable) 2023-02-17T11:47:39,635 checking whether can be included... yes 2023-02-17T11:47:39,635 checking whether can be included... yes 2023-02-17T11:47:39,636 checking whether can be included... yes 2023-02-17T11:47:39,636 checking whether can be included... yes 2023-02-17T11:47:39,637 checking whether can be included... yes 2023-02-17T11:47:39,637 checking whether can be included... yes 2023-02-17T11:47:39,638 checking whether can be included... yes 2023-02-17T11:47:39,638 checking whether can be included... yes 2023-02-17T11:47:39,639 checking whether can be included... yes 2023-02-17T11:47:39,639 checking whether can be included... yes 2023-02-17T11:47:39,639 checking whether can be included... yes 2023-02-17T11:47:39,639 checking whether can be included... yes 2023-02-17T11:47:39,640 checking whether can be included... yes 2023-02-17T11:47:39,640 checking whether function 'aligned_alloc' is available... yes 2023-02-17T11:47:39,640 checking whether function 'erfc' is available... yes 2023-02-17T11:47:39,641 checking whether function 'getpid' is available... yes 2023-02-17T11:47:39,641 checking whether function '_mm_malloc' is available... no 2023-02-17T11:47:39,641 checking whether function 'popen' is available... yes 2023-02-17T11:47:39,642 checking whether function 'posix_memalign' is available... yes 2023-02-17T11:47:39,642 checking whether function 'strcasecmp' is available... yes 2023-02-17T11:47:39,642 checking whether function 'strsep' is available... yes 2023-02-17T11:47:39,642 checking whether function 'sysconf' is available... yes 2023-02-17T11:47:39,643 checking whether function 'sysctl' is available... yes 2023-02-17T11:47:39,643 checking whether function 'times' is available... yes 2023-02-17T11:47:39,643 checking whether function 'fseeko' is available... yes 2023-02-17T11:47:39,644 checking whether can be included... yes 2023-02-17T11:47:39,644 checking whether can be included... yes 2023-02-17T11:47:39,645 checking whether can be included... yes 2023-02-17T11:47:39,645 checking whether can be included... yes 2023-02-17T11:47:39,645 checking whether can be included... yes 2023-02-17T11:47:39,646 checking whether can be included... yes 2023-02-17T11:47:39,646 checking whether can be included... yes 2023-02-17T11:47:39,647 checking whether can be included... yes 2023-02-17T11:47:39,647 checking whether function 'mkstemp' is available... yes 2023-02-17T11:47:39,648 checking whether function 'popen' is available... yes 2023-02-17T11:47:39,648 checking whether function 'putenv' is available... yes 2023-02-17T11:47:39,649 checking whether function 'strcasecmp' is available... yes 2023-02-17T11:47:39,649 checking whether function 'strsep' is available... yes 2023-02-17T11:47:39,649 checking whether function 'times' is available... yes 2023-02-17T11:47:39,650 checking whether function 'getpid' is available... yes 2023-02-17T11:47:39,650 checking whether function 'sysctl' is available... yes 2023-02-17T11:47:39,651 checking whether function 'sysconf' is available... yes 2023-02-17T11:47:39,651 checking whether function 'getcwd' is available... yes 2023-02-17T11:47:39,652 checking whether function 'chmod' is available... yes 2023-02-17T11:47:39,652 checking whether function 'stat' is available... yes 2023-02-17T11:47:39,652 checking whether function 'fstat' is available... yes 2023-02-17T11:47:39,653 checking whether function 'erfc' is available... yes 2023-02-17T11:47:39,653 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-02-17T11:47:39,796 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2023-02-17T11:47:39,842 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.7/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmp7ibg1_oy[/] 2023-02-17T11:47:39,843 [bold magenta]cwd[/]: /tmp/pip-wheel-aojicmux/pyhmmer_984d85e9b8844161ba57ac7675f7a62f 2023-02-17T11:47:39,843 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2023-02-17T11:47:39,848 ERROR: Failed building wheel for pyhmmer 2023-02-17T11:47:39,853 Failed to build pyhmmer 2023-02-17T11:47:39,856 ERROR: Failed to build one or more wheels 2023-02-17T11:47:39,858 Exception information: 2023-02-17T11:47:39,858 Traceback (most recent call last): 2023-02-17T11:47:39,858 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2023-02-17T11:47:39,858 status = run_func(*args) 2023-02-17T11:47:39,858 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2023-02-17T11:47:39,858 return func(self, options, args) 2023-02-17T11:47:39,858 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 201, in run 2023-02-17T11:47:39,858 raise CommandError("Failed to build one or more wheels") 2023-02-17T11:47:39,858 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-02-17T11:47:39,868 Removed build tracker: '/tmp/pip-build-tracker-wdvuvqe4'