2023-02-21T11:24:53,475 Created temporary directory: /tmp/pip-ephem-wheel-cache-kodro1l8 2023-02-21T11:24:53,481 Created temporary directory: /tmp/pip-build-tracker-i86dogzj 2023-02-21T11:24:53,482 Initialized build tracking at /tmp/pip-build-tracker-i86dogzj 2023-02-21T11:24:53,482 Created build tracker: /tmp/pip-build-tracker-i86dogzj 2023-02-21T11:24:53,482 Entered build tracker: /tmp/pip-build-tracker-i86dogzj 2023-02-21T11:24:53,484 Created temporary directory: /tmp/pip-wheel-0axp33tl 2023-02-21T11:24:53,494 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-21T11:24:53,500 Created temporary directory: /tmp/pip-ephem-wheel-cache-xd0bocmx 2023-02-21T11:24:53,555 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-21T11:24:53,563 2 location(s) to search for versions of tangelo-gc: 2023-02-21T11:24:53,563 * https://pypi.org/simple/tangelo-gc/ 2023-02-21T11:24:53,563 * https://www.piwheels.org/simple/tangelo-gc/ 2023-02-21T11:24:53,564 Fetching project page and analyzing links: https://pypi.org/simple/tangelo-gc/ 2023-02-21T11:24:53,565 Getting page https://pypi.org/simple/tangelo-gc/ 2023-02-21T11:24:53,569 Found index url https://pypi.org/simple 2023-02-21T11:24:53,752 Fetched page https://pypi.org/simple/tangelo-gc/ as application/vnd.pypi.simple.v1+json 2023-02-21T11:24:53,759 Found link https://files.pythonhosted.org/packages/57/3e/cac5a05ffadb55f3f3d9287cf32e61df3ec9325a121a5ebd7b06e21a81c5/tangelo-gc-0.3.0.tar.gz (from https://pypi.org/simple/tangelo-gc/), version: 0.3.0 2023-02-21T11:24:53,760 Skipping link: No binaries permitted for tangelo-gc: https://files.pythonhosted.org/packages/f3/bc/8c726c565b77f13473de2b7bdb1998aee4c00fdad2de45dcbbe9f3905332/tangelo_gc-0.3.0-py3-none-any.whl (from https://pypi.org/simple/tangelo-gc/) 2023-02-21T11:24:53,760 Found link https://files.pythonhosted.org/packages/59/35/f9936379537a7c654f8c6dff34bc714f9624fd632433eef3b929b039dd88/tangelo-gc-0.3.1.tar.gz (from https://pypi.org/simple/tangelo-gc/), version: 0.3.1 2023-02-21T11:24:53,761 Skipping link: No binaries permitted for tangelo-gc: https://files.pythonhosted.org/packages/32/e9/d295f3615e2f024847c69ba326cecb38a7bb861f79534468c2d2d036deb2/tangelo_gc-0.3.1-py3-none-any.whl (from https://pypi.org/simple/tangelo-gc/) 2023-02-21T11:24:53,762 Found link https://files.pythonhosted.org/packages/09/e3/e5e9e85261c31c3d31a393e3ac147c526d1dd7d7ec45b3d4d472f8344d83/tangelo-gc-0.3.2.tar.gz (from https://pypi.org/simple/tangelo-gc/), version: 0.3.2 2023-02-21T11:24:53,762 Skipping link: No binaries permitted for tangelo-gc: https://files.pythonhosted.org/packages/f9/1e/db25069c496981d7dba8c4b74edf19d6420b47239c5b23284904b95135ba/tangelo_gc-0.3.2-py3-none-any.whl (from https://pypi.org/simple/tangelo-gc/) 2023-02-21T11:24:53,763 Found link https://files.pythonhosted.org/packages/8e/69/e02ab30c8bafc965c55de942fd51d01ec68b6e63716c1437ccd73101562c/tangelo-gc-0.3.3.tar.gz (from https://pypi.org/simple/tangelo-gc/), version: 0.3.3 2023-02-21T11:24:53,764 Skipping link: No binaries permitted for tangelo-gc: https://files.pythonhosted.org/packages/de/cd/d55224f13f803a06b1b9dcf50b4bbadbbc2689519c4f0df70956652372c3/tangelo_gc-0.3.3-py3-none-any.whl (from https://pypi.org/simple/tangelo-gc/) 2023-02-21T11:24:53,764 Found link https://files.pythonhosted.org/packages/f5/1a/90d6f1f838c7b292ffa738cc80876bb384b35a50e9097ccc76d0c8b1ca7e/tangelo-gc-0.3.4.tar.gz (from https://pypi.org/simple/tangelo-gc/), version: 0.3.4 2023-02-21T11:24:53,765 Skipping link: No binaries permitted for tangelo-gc: https://files.pythonhosted.org/packages/ed/41/0f7a05719cf69404e85540b43d611ae48dd0e103ba54a4133f542634aae3/tangelo_gc-0.3.4-py3-none-any.whl (from https://pypi.org/simple/tangelo-gc/) 2023-02-21T11:24:53,765 Fetching project page and analyzing links: https://www.piwheels.org/simple/tangelo-gc/ 2023-02-21T11:24:53,766 Getting page https://www.piwheels.org/simple/tangelo-gc/ 2023-02-21T11:24:53,768 Found index url https://www.piwheels.org/simple 2023-02-21T11:24:53,996 Fetched page https://www.piwheels.org/simple/tangelo-gc/ as text/html 2023-02-21T11:24:53,998 Skipping link: not a file: https://www.piwheels.org/simple/tangelo-gc/ 2023-02-21T11:24:53,998 Skipping link: not a file: https://pypi.org/simple/tangelo-gc/ 2023-02-21T11:24:54,034 Given no hashes to check 1 links for project 'tangelo-gc': discarding no candidates 2023-02-21T11:24:54,062 Collecting tangelo-gc==0.3.4 2023-02-21T11:24:54,067 Created temporary directory: /tmp/pip-unpack-5qut_zcl 2023-02-21T11:24:54,604 Downloading tangelo-gc-0.3.4.tar.gz (296 kB) 2023-02-21T11:24:55,888 Added tangelo-gc==0.3.4 from https://files.pythonhosted.org/packages/f5/1a/90d6f1f838c7b292ffa738cc80876bb384b35a50e9097ccc76d0c8b1ca7e/tangelo-gc-0.3.4.tar.gz to build tracker '/tmp/pip-build-tracker-i86dogzj' 2023-02-21T11:24:55,890 Running setup.py (path:/tmp/pip-wheel-0axp33tl/tangelo-gc_bc27d34c28714ece811573517be5223a/setup.py) egg_info for package tangelo-gc 2023-02-21T11:24:55,892 Created temporary directory: /tmp/pip-pip-egg-info-00610ozi 2023-02-21T11:24:55,893 Preparing metadata (setup.py): started 2023-02-21T11:24:55,895 Running command python setup.py egg_info 2023-02-21T11:24:59,821 Defaulting to user installation because normal site-packages is not writeable 2023-02-21T11:25:01,103 Requirement already satisfied: wheel in /usr/lib/python3/dist-packages (0.32.3) 2023-02-21T11:25:08,351 Defaulting to user installation because normal site-packages is not writeable 2023-02-21T11:25:10,212 Collecting pyscf 2023-02-21T11:25:10,313 Downloading pyscf-2.1.1.tar.gz (8.5 MB) 2023-02-21T11:25:12,278 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.5/8.5 MB 4.4 MB/s eta 0:00:00 2023-02-21T11:25:21,479 Preparing metadata (setup.py): started 2023-02-21T11:25:25,060 Preparing metadata (setup.py): finished with status 'done' 2023-02-21T11:25:25,185 Requirement already satisfied: numpy!=1.16,!=1.17,>=1.13 in /usr/local/lib/python3.7/dist-packages (from pyscf) (1.21.4) 2023-02-21T11:25:25,192 Requirement already satisfied: scipy!=1.5.0,!=1.5.1 in /usr/local/lib/python3.7/dist-packages (from pyscf) (1.7.3) 2023-02-21T11:25:25,658 Collecting h5py>=2.7 2023-02-21T11:25:25,680 Downloading h5py-3.8.0.tar.gz (400 kB) 2023-02-21T11:25:25,809 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 400.8/400.8 kB 3.8 MB/s eta 0:00:00 2023-02-21T11:25:26,927 Installing build dependencies: started 2023-02-21T11:26:49,850 Installing build dependencies: still running... 2023-02-21T11:27:57,510 Installing build dependencies: still running... 2023-02-21T11:29:31,473 Installing build dependencies: still running... 2023-02-21T11:30:34,215 Installing build dependencies: still running... 2023-02-21T11:31:36,233 Installing build dependencies: still running... 2023-02-21T11:32:39,554 Installing build dependencies: still running... 2023-02-21T11:33:41,423 Installing build dependencies: still running... 2023-02-21T11:39:00,767 Installing build dependencies: still running... 2023-02-21T11:40:26,843 Installing build dependencies: still running... 2023-02-21T11:41:26,904 Installing build dependencies: still running... 2023-02-21T11:43:17,354 Installing build dependencies: still running... 2023-02-21T11:44:18,849 Installing build dependencies: still running... 2023-02-21T11:47:52,299 Installing build dependencies: still running... 2023-02-21T11:50:13,969 Installing build dependencies: still running... 2023-02-21T11:50:51,538 Installing build dependencies: finished with status 'done' 2023-02-21T11:50:51,546 Getting requirements to build wheel: started 2023-02-21T11:50:54,967 Getting requirements to build wheel: finished with status 'done' 2023-02-21T11:50:55,001 Installing backend dependencies: started 2023-02-21T11:51:04,833 Installing backend dependencies: finished with status 'done' 2023-02-21T11:51:04,843 Preparing metadata (pyproject.toml): started 2023-02-21T11:51:08,286 Preparing metadata (pyproject.toml): finished with status 'done' 2023-02-21T11:51:08,356 Building wheels for collected packages: pyscf, h5py 2023-02-21T11:51:08,364 Building wheel for pyscf (setup.py): started 2023-02-21T11:51:32,701 Building wheel for pyscf (setup.py): finished with status 'error' 2023-02-21T11:51:32,794 error: subprocess-exited-with-error 2023-02-21T11:51:32,795 × python setup.py bdist_wheel did not run successfully. 2023-02-21T11:51:32,795 │ exit code: 1 2023-02-21T11:51:32,795 ╰─> [89 lines of output] 2023-02-21T11:51:32,796 running bdist_wheel 2023-02-21T11:51:32,796 running build 2023-02-21T11:51:32,796 running build_ext 2023-02-21T11:51:32,797 cmake -S/tmp/pip-install-bcmg4y0e/pyscf_fa13d99d5b804ca9b1d0af156491af74/pyscf/lib -Bbuild/temp.linux-armv7l-cpython-37 2023-02-21T11:51:32,797 -- The C compiler identification is GNU 8.3.0 2023-02-21T11:51:32,797 -- The CXX compiler identification is GNU 8.3.0 2023-02-21T11:51:32,798 -- Check for working C compiler: /usr/bin/cc 2023-02-21T11:51:32,798 -- Check for working C compiler: /usr/bin/cc -- works 2023-02-21T11:51:32,798 -- Detecting C compiler ABI info 2023-02-21T11:51:32,799 -- Detecting C compiler ABI info - done 2023-02-21T11:51:32,799 -- Detecting C compile features 2023-02-21T11:51:32,799 -- Detecting C compile features - done 2023-02-21T11:51:32,800 -- Check for working CXX compiler: /usr/bin/c++ 2023-02-21T11:51:32,800 -- Check for working CXX compiler: /usr/bin/c++ -- works 2023-02-21T11:51:32,800 -- Detecting CXX compiler ABI info 2023-02-21T11:51:32,801 -- Detecting CXX compiler ABI info - done 2023-02-21T11:51:32,801 -- Detecting CXX compile features 2023-02-21T11:51:32,801 -- Detecting CXX compile features - done 2023-02-21T11:51:32,802 -- Performing Test COMPILER_SUPPORTS_SSE3 2023-02-21T11:51:32,802 -- Performing Test COMPILER_SUPPORTS_SSE3 - Failed 2023-02-21T11:51:32,802 -- Looking for sgemm_ 2023-02-21T11:51:32,802 -- Looking for sgemm_ - not found 2023-02-21T11:51:32,803 -- Looking for pthread.h 2023-02-21T11:51:32,803 -- Looking for pthread.h - found 2023-02-21T11:51:32,803 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD 2023-02-21T11:51:32,804 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed 2023-02-21T11:51:32,804 -- Looking for pthread_create in pthreads 2023-02-21T11:51:32,804 -- Looking for pthread_create in pthreads - not found 2023-02-21T11:51:32,805 -- Looking for pthread_create in pthread 2023-02-21T11:51:32,805 -- Looking for pthread_create in pthread - found 2023-02-21T11:51:32,805 -- Found Threads: TRUE 2023-02-21T11:51:32,805 -- Looking for dgemm_ 2023-02-21T11:51:32,806 -- Looking for dgemm_ - found 2023-02-21T11:51:32,806 -- Found BLAS: /usr/lib/arm-linux-gnueabihf/libf77blas.so;/usr/lib/arm-linux-gnueabihf/libatlas.so 2023-02-21T11:51:32,807 -- Looking for ffsll 2023-02-21T11:51:32,807 -- Looking for ffsll - found 2023-02-21T11:51:32,807 -- BLAS libraries: /usr/lib/arm-linux-gnueabihf/libf77blas.so;/usr/lib/arm-linux-gnueabihf/libatlas.so 2023-02-21T11:51:32,808 -- Found OpenMP_C: -fopenmp (found version "4.5") 2023-02-21T11:51:32,808 -- Found OpenMP_CXX: -fopenmp (found version "4.5") 2023-02-21T11:51:32,808 -- Found OpenMP: TRUE (found version "4.5") 2023-02-21T11:51:32,809 -- Configuring done 2023-02-21T11:51:32,809 -- Generating done 2023-02-21T11:51:32,809 -- Build files have been written to: /tmp/pip-install-bcmg4y0e/pyscf_fa13d99d5b804ca9b1d0af156491af74/build/temp.linux-armv7l-cpython-37 2023-02-21T11:51:32,810 cmake --build build/temp.linux-armv7l-cpython-37 -j2 2023-02-21T11:51:32,810 make: Warning: File 'Makefile' has modification time 0.76 s in the future 2023-02-21T11:51:32,810 make[1]: Warning: File 'CMakeFiles/Makefile2' has modification time 1.4 s in the future 2023-02-21T11:51:32,811 make[2]: Warning: File 'CMakeFiles/libxcfun.dir/progress.make' has modification time 1.3 s in the future 2023-02-21T11:51:32,811 make[2]: Warning: File 'CMakeFiles/libcint.dir/progress.make' has modification time 1.3 s in the future 2023-02-21T11:51:32,811 Scanning dependencies of target libxcfun 2023-02-21T11:51:32,812 Scanning dependencies of target libcint 2023-02-21T11:51:32,812 make[2]: warning: Clock skew detected. Your build may be incomplete. 2023-02-21T11:51:32,812 make[2]: warning: Clock skew detected. Your build may be incomplete. 2023-02-21T11:51:32,813 make[2]: Warning: File 'CMakeFiles/libxcfun.dir/progress.make' has modification time 1.2 s in the future 2023-02-21T11:51:32,813 make[2]: Warning: File 'CMakeFiles/libcint.dir/progress.make' has modification time 1.2 s in the future 2023-02-21T11:51:32,813 [ 1%] Creating directories for 'libxcfun' 2023-02-21T11:51:32,813 [ 2%] Creating directories for 'libcint' 2023-02-21T11:51:32,814 [ 3%] Performing download step (git clone) for 'libxcfun' 2023-02-21T11:51:32,814 [ 3%] Performing download step (git clone) for 'libcint' 2023-02-21T11:51:32,814 Cloning into 'libxcfun'... 2023-02-21T11:51:32,815 Cloning into 'libcint'... 2023-02-21T11:51:32,815 fatal: transport 'https' not allowed 2023-02-21T11:51:32,815 fatal: transport 'https' not allowed 2023-02-21T11:51:32,816 Cloning into 'libxcfun'... 2023-02-21T11:51:32,816 Cloning into 'libcint'... 2023-02-21T11:51:32,816 fatal: transport 'https' not allowed 2023-02-21T11:51:32,817 fatal: transport 'https' not allowed 2023-02-21T11:51:32,817 Cloning into 'libcint'... 2023-02-21T11:51:32,817 Cloning into 'libxcfun'... 2023-02-21T11:51:32,818 fatal: transport 'https' not allowed 2023-02-21T11:51:32,818 fatal: transport 'https' not allowed 2023-02-21T11:51:32,818 -- Had to git clone more than once: 2023-02-21T11:51:32,819 3 times. 2023-02-21T11:51:32,819 CMake Error at /tmp/pip-install-bcmg4y0e/pyscf_fa13d99d5b804ca9b1d0af156491af74/build/temp.linux-armv7l-cpython-37/deps/tmp/libcint-gitclone.cmake:31 (message): 2023-02-21T11:51:32,820 Failed to clone repository: 'https://github.com/sunqm/libcint.git' 2023-02-21T11:51:32,821 make[2]: *** [CMakeFiles/libcint.dir/build.make:91: deps/src/libcint-stamp/libcint-download] Error 1 2023-02-21T11:51:32,821 make[1]: *** [CMakeFiles/Makefile2:322: CMakeFiles/libcint.dir/all] Error 2 2023-02-21T11:51:32,821 make[1]: *** Waiting for unfinished jobs.... 2023-02-21T11:51:32,822 -- Had to git clone more than once: 2023-02-21T11:51:32,822 3 times. 2023-02-21T11:51:32,822 CMake Error at /tmp/pip-install-bcmg4y0e/pyscf_fa13d99d5b804ca9b1d0af156491af74/build/temp.linux-armv7l-cpython-37/deps/tmp/libxcfun-gitclone.cmake:31 (message): 2023-02-21T11:51:32,823 Failed to clone repository: 'https://github.com/fishjojo/xcfun.git' 2023-02-21T11:51:32,824 make[2]: *** [CMakeFiles/libxcfun.dir/build.make:91: deps/src/libxcfun-stamp/libxcfun-download] Error 1 2023-02-21T11:51:32,824 make[1]: *** [CMakeFiles/Makefile2:295: CMakeFiles/libxcfun.dir/all] Error 2 2023-02-21T11:51:32,824 make: *** [Makefile:84: all] Error 2 2023-02-21T11:51:32,825 error: command '/usr/bin/cmake' failed with exit code 2 2023-02-21T11:51:32,825 [end of output] 2023-02-21T11:51:32,826 note: This error originates from a subprocess, and is likely not a problem with pip. 2023-02-21T11:51:32,826 ERROR: Failed building wheel for pyscf 2023-02-21T11:51:32,827 Running setup.py clean for pyscf 2023-02-21T11:51:35,158 Building wheel for h5py (pyproject.toml): started 2023-02-21T11:56:58,108 Building wheel for h5py (pyproject.toml): still running... 2023-02-21T11:58:17,623 Building wheel for h5py (pyproject.toml): still running... 2023-02-21T11:59:23,558 Building wheel for h5py (pyproject.toml): still running... 2023-02-21T12:00:24,627 Building wheel for h5py (pyproject.toml): still running... 2023-02-21T12:01:25,997 Building wheel for h5py (pyproject.toml): still running... 2023-02-21T12:02:33,675 Building wheel for h5py (pyproject.toml): still running... 2023-02-21T12:03:35,105 Building wheel for h5py (pyproject.toml): still running... 2023-02-21T12:05:44,867 Building wheel for h5py (pyproject.toml): still running... 2023-02-21T12:07:04,929 Building wheel for h5py (pyproject.toml): still running... 2023-02-21T12:09:12,620 Building wheel for h5py (pyproject.toml): still running... 2023-02-21T12:10:17,319 Building wheel for h5py (pyproject.toml): still running... 2023-02-21T12:11:32,382 Building wheel for h5py (pyproject.toml): still running... 2023-02-21T12:12:45,968 Building wheel for h5py (pyproject.toml): still running... 2023-02-21T12:13:58,676 Building wheel for h5py (pyproject.toml): still running... 2023-02-21T12:15:01,026 Building wheel for h5py (pyproject.toml): still running... 2023-02-21T12:15:11,667 Building wheel for h5py (pyproject.toml): finished with status 'done' 2023-02-21T12:15:11,944 Created wheel for h5py: filename=h5py-3.8.0-cp37-cp37m-linux_armv7l.whl size=2510393 sha256=c66d7a813fe35b814fe2a4b94ef8e4fb0be8177901b0a988228529057241c283 2023-02-21T12:15:11,946 Stored in directory: /home/piwheels/.cache/pip/wheels/74/be/6d/26aec5e688675ed7fb68e1bfab3f2d0fe09d3c821b71f3dffe 2023-02-21T12:15:11,977 Successfully built h5py 2023-02-21T12:15:11,979 Failed to build pyscf 2023-02-21T12:15:15,838 Installing collected packages: h5py, pyscf 2023-02-21T12:15:17,649 Running setup.py install for pyscf: started 2023-02-21T12:15:40,307 Running setup.py install for pyscf: finished with status 'error' 2023-02-21T12:15:40,375 error: subprocess-exited-with-error 2023-02-21T12:15:40,376 × Running setup.py install for pyscf did not run successfully. 2023-02-21T12:15:40,376 │ exit code: 1 2023-02-21T12:15:40,376 ╰─> [91 lines of output] 2023-02-21T12:15:40,377 running install 2023-02-21T12:15:40,377 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-02-21T12:15:40,377 setuptools.SetuptoolsDeprecationWarning, 2023-02-21T12:15:40,378 running build 2023-02-21T12:15:40,378 running build_ext 2023-02-21T12:15:40,378 cmake -S/tmp/pip-install-bcmg4y0e/pyscf_fa13d99d5b804ca9b1d0af156491af74/pyscf/lib -Bbuild/temp.linux-armv7l-cpython-37 2023-02-21T12:15:40,379 -- The C compiler identification is GNU 8.3.0 2023-02-21T12:15:40,379 -- The CXX compiler identification is GNU 8.3.0 2023-02-21T12:15:40,379 -- Check for working C compiler: /usr/bin/cc 2023-02-21T12:15:40,380 -- Check for working C compiler: /usr/bin/cc -- works 2023-02-21T12:15:40,380 -- Detecting C compiler ABI info 2023-02-21T12:15:40,380 -- Detecting C compiler ABI info - done 2023-02-21T12:15:40,381 -- Detecting C compile features 2023-02-21T12:15:40,381 -- Detecting C compile features - done 2023-02-21T12:15:40,381 -- Check for working CXX compiler: /usr/bin/c++ 2023-02-21T12:15:40,382 -- Check for working CXX compiler: /usr/bin/c++ -- works 2023-02-21T12:15:40,382 -- Detecting CXX compiler ABI info 2023-02-21T12:15:40,382 -- Detecting CXX compiler ABI info - done 2023-02-21T12:15:40,383 -- Detecting CXX compile features 2023-02-21T12:15:40,383 -- Detecting CXX compile features - done 2023-02-21T12:15:40,384 -- Performing Test COMPILER_SUPPORTS_SSE3 2023-02-21T12:15:40,384 -- Performing Test COMPILER_SUPPORTS_SSE3 - Failed 2023-02-21T12:15:40,384 -- Looking for sgemm_ 2023-02-21T12:15:40,385 -- Looking for sgemm_ - not found 2023-02-21T12:15:40,385 -- Looking for pthread.h 2023-02-21T12:15:40,385 -- Looking for pthread.h - found 2023-02-21T12:15:40,385 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD 2023-02-21T12:15:40,386 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed 2023-02-21T12:15:40,386 -- Looking for pthread_create in pthreads 2023-02-21T12:15:40,386 -- Looking for pthread_create in pthreads - not found 2023-02-21T12:15:40,387 -- Looking for pthread_create in pthread 2023-02-21T12:15:40,387 -- Looking for pthread_create in pthread - found 2023-02-21T12:15:40,387 -- Found Threads: TRUE 2023-02-21T12:15:40,388 -- Looking for dgemm_ 2023-02-21T12:15:40,388 -- Looking for dgemm_ - found 2023-02-21T12:15:40,388 -- Found BLAS: /usr/lib/arm-linux-gnueabihf/libf77blas.so;/usr/lib/arm-linux-gnueabihf/libatlas.so 2023-02-21T12:15:40,388 -- Looking for ffsll 2023-02-21T12:15:40,389 -- Looking for ffsll - found 2023-02-21T12:15:40,389 -- BLAS libraries: /usr/lib/arm-linux-gnueabihf/libf77blas.so;/usr/lib/arm-linux-gnueabihf/libatlas.so 2023-02-21T12:15:40,389 -- Found OpenMP_C: -fopenmp (found version "4.5") 2023-02-21T12:15:40,390 -- Found OpenMP_CXX: -fopenmp (found version "4.5") 2023-02-21T12:15:40,390 -- Found OpenMP: TRUE (found version "4.5") 2023-02-21T12:15:40,390 -- Configuring done 2023-02-21T12:15:40,390 -- Generating done 2023-02-21T12:15:40,391 -- Build files have been written to: /tmp/pip-install-bcmg4y0e/pyscf_fa13d99d5b804ca9b1d0af156491af74/build/temp.linux-armv7l-cpython-37 2023-02-21T12:15:40,391 cmake --build build/temp.linux-armv7l-cpython-37 -j2 2023-02-21T12:15:40,391 make: Warning: File 'Makefile' has modification time 0.78 s in the future 2023-02-21T12:15:40,392 make[1]: Warning: File 'CMakeFiles/Makefile2' has modification time 1.4 s in the future 2023-02-21T12:15:40,392 make[2]: Warning: File 'CMakeFiles/libxcfun.dir/progress.make' has modification time 1.3 s in the future 2023-02-21T12:15:40,392 make[2]: Warning: File 'CMakeFiles/libcint.dir/progress.make' has modification time 1.3 s in the future 2023-02-21T12:15:40,393 Scanning dependencies of target libxcfun 2023-02-21T12:15:40,393 Scanning dependencies of target libcint 2023-02-21T12:15:40,393 make[2]: warning: Clock skew detected. Your build may be incomplete. 2023-02-21T12:15:40,394 make[2]: warning: Clock skew detected. Your build may be incomplete. 2023-02-21T12:15:40,394 make[2]: Warning: File 'CMakeFiles/libxcfun.dir/progress.make' has modification time 1.2 s in the future 2023-02-21T12:15:40,394 make[2]: Warning: File 'CMakeFiles/libcint.dir/progress.make' has modification time 1.2 s in the future 2023-02-21T12:15:40,394 [ 2%] Creating directories for 'libxcfun' 2023-02-21T12:15:40,395 [ 2%] Creating directories for 'libcint' 2023-02-21T12:15:40,395 [ 3%] Performing download step (git clone) for 'libxcfun' 2023-02-21T12:15:40,395 [ 3%] Performing download step (git clone) for 'libcint' 2023-02-21T12:15:40,396 Cloning into 'libcint'... 2023-02-21T12:15:40,396 Cloning into 'libxcfun'... 2023-02-21T12:15:40,396 fatal: transport 'https' not allowed 2023-02-21T12:15:40,397 fatal: transport 'https' not allowed 2023-02-21T12:15:40,397 Cloning into 'libcint'... 2023-02-21T12:15:40,397 Cloning into 'libxcfun'... 2023-02-21T12:15:40,397 fatal: transport 'https' not allowed 2023-02-21T12:15:40,398 fatal: transport 'https' not allowed 2023-02-21T12:15:40,398 Cloning into 'libcint'... 2023-02-21T12:15:40,398 Cloning into 'libxcfun'... 2023-02-21T12:15:40,399 fatal: transport 'https' not allowed 2023-02-21T12:15:40,399 -- Had to git clone more than once: 2023-02-21T12:15:40,399 3 times. 2023-02-21T12:15:40,400 CMake Error at /tmp/pip-install-bcmg4y0e/pyscf_fa13d99d5b804ca9b1d0af156491af74/build/temp.linux-armv7l-cpython-37/deps/tmp/libcint-gitclone.cmake:31 (message): 2023-02-21T12:15:40,400 Failed to clone repository: 'https://github.com/sunqm/libcint.git' 2023-02-21T12:15:40,401 fatal: transport 'https' not allowed 2023-02-21T12:15:40,401 make[2]: *** [CMakeFiles/libcint.dir/build.make:91: deps/src/libcint-stamp/libcint-download] Error 1 2023-02-21T12:15:40,402 make[1]: *** [CMakeFiles/Makefile2:322: CMakeFiles/libcint.dir/all] Error 2 2023-02-21T12:15:40,402 make[1]: *** Waiting for unfinished jobs.... 2023-02-21T12:15:40,402 -- Had to git clone more than once: 2023-02-21T12:15:40,402 3 times. 2023-02-21T12:15:40,403 CMake Error at /tmp/pip-install-bcmg4y0e/pyscf_fa13d99d5b804ca9b1d0af156491af74/build/temp.linux-armv7l-cpython-37/deps/tmp/libxcfun-gitclone.cmake:31 (message): 2023-02-21T12:15:40,403 Failed to clone repository: 'https://github.com/fishjojo/xcfun.git' 2023-02-21T12:15:40,404 make[2]: *** [CMakeFiles/libxcfun.dir/build.make:91: deps/src/libxcfun-stamp/libxcfun-download] Error 1 2023-02-21T12:15:40,404 make[1]: *** [CMakeFiles/Makefile2:295: CMakeFiles/libxcfun.dir/all] Error 2 2023-02-21T12:15:40,405 make: *** [Makefile:84: all] Error 2 2023-02-21T12:15:40,405 error: command '/usr/bin/cmake' failed with exit code 2 2023-02-21T12:15:40,405 [end of output] 2023-02-21T12:15:40,406 note: This error originates from a subprocess, and is likely not a problem with pip. 2023-02-21T12:15:40,406 error: legacy-install-failure 2023-02-21T12:15:40,407 × Encountered error while trying to install package. 2023-02-21T12:15:40,407 ╰─> pyscf 2023-02-21T12:15:40,408 note: This is an issue with the package mentioned above, not pip. 2023-02-21T12:15:40,408 hint: See above for output from the failure. 2023-02-21T12:15:43,168 Traceback (most recent call last): 2023-02-21T12:15:43,168 File "", line 36, in 2023-02-21T12:15:43,168 File "", line 34, in 2023-02-21T12:15:43,169 File "/tmp/pip-wheel-0axp33tl/tangelo-gc_bc27d34c28714ece811573517be5223a/setup.py", line 16, in 2023-02-21T12:15:43,169 install('pyscf') 2023-02-21T12:15:43,169 File "/tmp/pip-wheel-0axp33tl/tangelo-gc_bc27d34c28714ece811573517be5223a/setup.py", line 7, in install 2023-02-21T12:15:43,170 subprocess.check_call([sys.executable, "-m", "pip", "install", package]) 2023-02-21T12:15:43,170 File "/usr/lib/python3.7/subprocess.py", line 347, in check_call 2023-02-21T12:15:43,170 raise CalledProcessError(retcode, cmd) 2023-02-21T12:15:43,171 subprocess.CalledProcessError: Command '['/usr/bin/python3', '-m', 'pip', 'install', 'pyscf']' returned non-zero exit status 1. 2023-02-21T12:15:43,273 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-02-21T12:15:43,317 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-02-21T12:15:43,317 exec(compile('"'"''"'"''"'"' 2023-02-21T12:15:43,317 # This is -- a caller that pip uses to run setup.py 2023-02-21T12:15:43,317 # 2023-02-21T12:15:43,317 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-02-21T12:15:43,317 # import from `distutils.core` to work with newer packaging standards. 2023-02-21T12:15:43,317 # - It provides a clear error message when setuptools is not installed. 2023-02-21T12:15:43,317 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-02-21T12:15:43,317 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-02-21T12:15:43,317 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-02-21T12:15:43,317 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-02-21T12:15:43,317 import os, sys, tokenize 2023-02-21T12:15:43,317 2023-02-21T12:15:43,317 try: 2023-02-21T12:15:43,317 import setuptools 2023-02-21T12:15:43,317 except ImportError as error: 2023-02-21T12:15:43,317 print( 2023-02-21T12:15:43,317 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-02-21T12:15:43,317 "the build environment.", 2023-02-21T12:15:43,317 file=sys.stderr, 2023-02-21T12:15:43,317 ) 2023-02-21T12:15:43,317 sys.exit(1) 2023-02-21T12:15:43,317 2023-02-21T12:15:43,317 __file__ = %r 2023-02-21T12:15:43,317 sys.argv[0] = __file__ 2023-02-21T12:15:43,317 2023-02-21T12:15:43,317 if os.path.exists(__file__): 2023-02-21T12:15:43,317 filename = __file__ 2023-02-21T12:15:43,317 with tokenize.open(__file__) as f: 2023-02-21T12:15:43,317 setup_py_code = f.read() 2023-02-21T12:15:43,317 else: 2023-02-21T12:15:43,317 filename = "" 2023-02-21T12:15:43,317 setup_py_code = "from setuptools import setup; setup()" 2023-02-21T12:15:43,317 2023-02-21T12:15:43,317 exec(compile(setup_py_code, filename, "exec")) 2023-02-21T12:15:43,317 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-0axp33tl/tangelo-gc_bc27d34c28714ece811573517be5223a/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-00610ozi[/] 2023-02-21T12:15:43,318 [bold magenta]cwd[/]: /tmp/pip-wheel-0axp33tl/tangelo-gc_bc27d34c28714ece811573517be5223a/ 2023-02-21T12:15:43,318 Preparing metadata (setup.py): finished with status 'error' 2023-02-21T12:15:43,321 ERROR: [present-rich] metadata generation failed 2023-02-21T12:15:43,336 Exception information: 2023-02-21T12:15:43,336 Traceback (most recent call last): 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 68, in generate_metadata 2023-02-21T12:15:43,336 spinner=spinner, 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-02-21T12:15:43,336 raise error 2023-02-21T12:15:43,336 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-02-21T12:15:43,336 2023-02-21T12:15:43,336 The above exception was the direct cause of the following exception: 2023-02-21T12:15:43,336 2023-02-21T12:15:43,336 Traceback (most recent call last): 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2023-02-21T12:15:43,336 status = run_func(*args) 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2023-02-21T12:15:43,336 return func(self, options, args) 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 170, in run 2023-02-21T12:15:43,336 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 93, in resolve 2023-02-21T12:15:43,336 collected.requirements, max_rounds=try_to_avoid_resolution_too_deep 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 481, in resolve 2023-02-21T12:15:43,336 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 348, in resolve 2023-02-21T12:15:43,336 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 172, in _add_to_criteria 2023-02-21T12:15:43,336 if not criterion.candidates: 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/structs.py", line 151, in __bool__ 2023-02-21T12:15:43,336 return bool(self._sequence) 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-02-21T12:15:43,336 return any(self) 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-02-21T12:15:43,336 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-02-21T12:15:43,336 candidate = func() 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 211, in _make_candidate_from_link 2023-02-21T12:15:43,336 version=version, 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 303, in __init__ 2023-02-21T12:15:43,336 version=version, 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 162, in __init__ 2023-02-21T12:15:43,336 self.dist = self._prepare() 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 231, in _prepare 2023-02-21T12:15:43,336 dist = self._prepare_distribution() 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 308, in _prepare_distribution 2023-02-21T12:15:43,336 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/prepare.py", line 491, in prepare_linked_requirement 2023-02-21T12:15:43,336 return self._prepare_linked_requirement(req, parallel_builds) 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/prepare.py", line 582, in _prepare_linked_requirement 2023-02-21T12:15:43,336 self.check_build_deps, 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/prepare.py", line 70, in _get_prepared_distribution 2023-02-21T12:15:43,336 finder, build_isolation, check_build_deps 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-02-21T12:15:43,336 self.req.prepare_metadata() 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/req/req_install.py", line 550, in prepare_metadata 2023-02-21T12:15:43,336 details=details, 2023-02-21T12:15:43,336 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-02-21T12:15:43,336 raise MetadataGenerationFailed(package_details=details) from error 2023-02-21T12:15:43,336 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-02-21T12:15:43,368 Removed tangelo-gc==0.3.4 from https://files.pythonhosted.org/packages/f5/1a/90d6f1f838c7b292ffa738cc80876bb384b35a50e9097ccc76d0c8b1ca7e/tangelo-gc-0.3.4.tar.gz from build tracker '/tmp/pip-build-tracker-i86dogzj' 2023-02-21T12:15:43,369 Removed build tracker: '/tmp/pip-build-tracker-i86dogzj'