2023-02-22T16:31:03,198 Created temporary directory: /tmp/pip-ephem-wheel-cache-g32iqxwn 2023-02-22T16:31:03,203 Created temporary directory: /tmp/pip-build-tracker-b2yhhy5n 2023-02-22T16:31:03,204 Initialized build tracking at /tmp/pip-build-tracker-b2yhhy5n 2023-02-22T16:31:03,204 Created build tracker: /tmp/pip-build-tracker-b2yhhy5n 2023-02-22T16:31:03,205 Entered build tracker: /tmp/pip-build-tracker-b2yhhy5n 2023-02-22T16:31:03,206 Created temporary directory: /tmp/pip-wheel-cno_ji34 2023-02-22T16:31:03,216 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-22T16:31:03,222 Created temporary directory: /tmp/pip-ephem-wheel-cache-owk799ar 2023-02-22T16:31:03,283 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-22T16:31:03,290 2 location(s) to search for versions of metacoag: 2023-02-22T16:31:03,290 * https://pypi.org/simple/metacoag/ 2023-02-22T16:31:03,290 * https://www.piwheels.org/simple/metacoag/ 2023-02-22T16:31:03,291 Fetching project page and analyzing links: https://pypi.org/simple/metacoag/ 2023-02-22T16:31:03,292 Getting page https://pypi.org/simple/metacoag/ 2023-02-22T16:31:03,296 Found index url https://pypi.org/simple 2023-02-22T16:31:03,485 Fetched page https://pypi.org/simple/metacoag/ as application/vnd.pypi.simple.v1+json 2023-02-22T16:31:03,489 Found link https://files.pythonhosted.org/packages/53/61/499797173de25b20da47625a6a422e11a90f0a0799994d4bae1caaaab63e/metacoag-1.1.0.tar.gz (from https://pypi.org/simple/metacoag/) (requires-python:>=3.7), version: 1.1.0 2023-02-22T16:31:03,490 Found link https://files.pythonhosted.org/packages/6d/90/2403523aadc2956207e9d7414658d4b895c13944e3b37dfad4d3ea64ca54/metacoag-1.1.1.tar.gz (from https://pypi.org/simple/metacoag/) (requires-python:>=3.7), version: 1.1.1 2023-02-22T16:31:03,491 Fetching project page and analyzing links: https://www.piwheels.org/simple/metacoag/ 2023-02-22T16:31:03,492 Getting page https://www.piwheels.org/simple/metacoag/ 2023-02-22T16:31:03,494 Found index url https://www.piwheels.org/simple 2023-02-22T16:31:03,736 Fetched page https://www.piwheels.org/simple/metacoag/ as text/html 2023-02-22T16:31:03,739 Skipping link: No binaries permitted for metacoag: https://www.piwheels.org/simple/metacoag/metacoag-1.1.0-py3-none-any.whl#sha256=c782e94b7e63de3bd31f4715a4eb6d1c108cbaba659876fcf16c844e3c71b216 (from https://www.piwheels.org/simple/metacoag/) (requires-python:>=3.7) 2023-02-22T16:31:03,740 Skipping link: not a file: https://www.piwheels.org/simple/metacoag/ 2023-02-22T16:31:03,741 Skipping link: not a file: https://pypi.org/simple/metacoag/ 2023-02-22T16:31:03,777 Given no hashes to check 1 links for project 'metacoag': discarding no candidates 2023-02-22T16:31:03,804 Collecting metacoag==1.1.1 2023-02-22T16:31:03,808 Created temporary directory: /tmp/pip-unpack-1_kdja6z 2023-02-22T16:31:04,534 Downloading metacoag-1.1.1.tar.gz (2.9 MB) 2023-02-22T16:31:07,608 Added metacoag==1.1.1 from https://files.pythonhosted.org/packages/6d/90/2403523aadc2956207e9d7414658d4b895c13944e3b37dfad4d3ea64ca54/metacoag-1.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-b2yhhy5n' 2023-02-22T16:31:07,612 Running setup.py (path:/tmp/pip-wheel-cno_ji34/metacoag_a8f76293092a4837a5c1e3350edf23d3/setup.py) egg_info for package metacoag 2023-02-22T16:31:07,613 Created temporary directory: /tmp/pip-pip-egg-info-u39wwzeg 2023-02-22T16:31:07,614 Preparing metadata (setup.py): started 2023-02-22T16:31:07,616 Running command python setup.py egg_info 2023-02-22T16:31:09,111 running egg_info 2023-02-22T16:31:09,115 creating /tmp/pip-pip-egg-info-u39wwzeg/metacoag.egg-info 2023-02-22T16:31:09,167 writing /tmp/pip-pip-egg-info-u39wwzeg/metacoag.egg-info/PKG-INFO 2023-02-22T16:31:09,174 writing dependency_links to /tmp/pip-pip-egg-info-u39wwzeg/metacoag.egg-info/dependency_links.txt 2023-02-22T16:31:09,179 writing entry points to /tmp/pip-pip-egg-info-u39wwzeg/metacoag.egg-info/entry_points.txt 2023-02-22T16:31:09,182 writing requirements to /tmp/pip-pip-egg-info-u39wwzeg/metacoag.egg-info/requires.txt 2023-02-22T16:31:09,185 writing top-level names to /tmp/pip-pip-egg-info-u39wwzeg/metacoag.egg-info/top_level.txt 2023-02-22T16:31:09,189 writing manifest file '/tmp/pip-pip-egg-info-u39wwzeg/metacoag.egg-info/SOURCES.txt' 2023-02-22T16:31:09,415 reading manifest file '/tmp/pip-pip-egg-info-u39wwzeg/metacoag.egg-info/SOURCES.txt' 2023-02-22T16:31:09,419 reading manifest template 'MANIFEST.in' 2023-02-22T16:31:09,439 warning: no previously-included files matching 'metacoag_utils/' found anywhere in distribution 2023-02-22T16:31:09,441 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-02-22T16:31:09,443 warning: no previously-included files matching 'metacoag_utils/__pycache__' found anywhere in distribution 2023-02-22T16:31:09,443 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-02-22T16:31:09,445 warning: no previously-included files matching 'metacoag_utils/support/' found anywhere in distribution 2023-02-22T16:31:09,445 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-02-22T16:31:09,447 warning: no previously-included files matching 'metacoag_utils/support/__pycache__' found anywhere in distribution 2023-02-22T16:31:09,448 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-02-22T16:31:09,448 adding license file 'LICENSE' 2023-02-22T16:31:09,454 writing manifest file '/tmp/pip-pip-egg-info-u39wwzeg/metacoag.egg-info/SOURCES.txt' 2023-02-22T16:31:09,572 Preparing metadata (setup.py): finished with status 'done' 2023-02-22T16:31:09,586 Source in /tmp/pip-wheel-cno_ji34/metacoag_a8f76293092a4837a5c1e3350edf23d3 has version 1.1.1, which satisfies requirement metacoag==1.1.1 from https://files.pythonhosted.org/packages/6d/90/2403523aadc2956207e9d7414658d4b895c13944e3b37dfad4d3ea64ca54/metacoag-1.1.1.tar.gz 2023-02-22T16:31:09,588 Removed metacoag==1.1.1 from https://files.pythonhosted.org/packages/6d/90/2403523aadc2956207e9d7414658d4b895c13944e3b37dfad4d3ea64ca54/metacoag-1.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-b2yhhy5n' 2023-02-22T16:31:09,604 Created temporary directory: /tmp/pip-unpack-tfqt1082 2023-02-22T16:31:09,605 Building wheels for collected packages: metacoag 2023-02-22T16:31:09,614 Created temporary directory: /tmp/pip-wheel-ed9lhqwf 2023-02-22T16:31:09,614 Building wheel for metacoag (setup.py): started 2023-02-22T16:31:09,616 Destination directory: /tmp/pip-wheel-ed9lhqwf 2023-02-22T16:31:09,617 Running command python setup.py bdist_wheel 2023-02-22T16:31:11,534 running bdist_wheel 2023-02-22T16:31:11,692 running build 2023-02-22T16:31:11,693 running build_py 2023-02-22T16:31:11,759 creating build 2023-02-22T16:31:11,760 creating build/lib 2023-02-22T16:31:11,762 creating build/lib/metacoag_utils 2023-02-22T16:31:11,764 copying metacoag_utils/matching_utils.py -> build/lib/metacoag_utils 2023-02-22T16:31:11,770 copying metacoag_utils/file_utils.py -> build/lib/metacoag_utils 2023-02-22T16:31:11,775 copying metacoag_utils/bidirectionalmap.py -> build/lib/metacoag_utils 2023-02-22T16:31:11,779 copying metacoag_utils/label_prop_utils.py -> build/lib/metacoag_utils 2023-02-22T16:31:11,784 copying metacoag_utils/marker_gene_utils.py -> build/lib/metacoag_utils 2023-02-22T16:31:11,789 copying metacoag_utils/graph_utils.py -> build/lib/metacoag_utils 2023-02-22T16:31:11,794 copying metacoag_utils/feature_utils.py -> build/lib/metacoag_utils 2023-02-22T16:31:11,799 copying metacoag_utils/__init__.py -> build/lib/metacoag_utils 2023-02-22T16:31:11,802 running egg_info 2023-02-22T16:31:11,933 writing metacoag.egg-info/PKG-INFO 2023-02-22T16:31:11,938 writing dependency_links to metacoag.egg-info/dependency_links.txt 2023-02-22T16:31:11,942 writing entry points to metacoag.egg-info/entry_points.txt 2023-02-22T16:31:11,944 writing requirements to metacoag.egg-info/requires.txt 2023-02-22T16:31:11,947 writing top-level names to metacoag.egg-info/top_level.txt 2023-02-22T16:31:12,004 reading manifest file 'metacoag.egg-info/SOURCES.txt' 2023-02-22T16:31:12,009 reading manifest template 'MANIFEST.in' 2023-02-22T16:31:12,028 warning: no previously-included files matching 'metacoag_utils/' found anywhere in distribution 2023-02-22T16:31:12,029 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-02-22T16:31:12,032 warning: no previously-included files matching 'metacoag_utils/__pycache__' found anywhere in distribution 2023-02-22T16:31:12,032 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-02-22T16:31:12,034 warning: no previously-included files matching 'metacoag_utils/support/' found anywhere in distribution 2023-02-22T16:31:12,035 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-02-22T16:31:12,037 warning: no previously-included files matching 'metacoag_utils/support/__pycache__' found anywhere in distribution 2023-02-22T16:31:12,037 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-02-22T16:31:12,038 adding license file 'LICENSE' 2023-02-22T16:31:12,044 writing manifest file 'metacoag.egg-info/SOURCES.txt' 2023-02-22T16:31:12,049 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'metacoag_utils.auxiliary' as data is deprecated, please list it in `packages`. 2023-02-22T16:31:12,050 !! 2023-02-22T16:31:12,051 ############################ 2023-02-22T16:31:12,051 # Package would be ignored # 2023-02-22T16:31:12,051 ############################ 2023-02-22T16:31:12,052 Python recognizes 'metacoag_utils.auxiliary' as an importable package, 2023-02-22T16:31:12,052 but it is not listed in the `packages` configuration of setuptools. 2023-02-22T16:31:12,053 'metacoag_utils.auxiliary' has been automatically added to the distribution only 2023-02-22T16:31:12,053 because it may contain data files, but this behavior is likely to change 2023-02-22T16:31:12,054 in future versions of setuptools (and therefore is considered deprecated). 2023-02-22T16:31:12,055 Please make sure that 'metacoag_utils.auxiliary' is included as a package by using 2023-02-22T16:31:12,055 the `packages` configuration field or the proper discovery methods 2023-02-22T16:31:12,056 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-22T16:31:12,056 instead of `find_packages(...)`/`find:`). 2023-02-22T16:31:12,057 You can read more about "package discovery" and "data files" on setuptools 2023-02-22T16:31:12,057 documentation page. 2023-02-22T16:31:12,058 !! 2023-02-22T16:31:12,058 check.warn(importable) 2023-02-22T16:31:12,059 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'metacoag_utils.support' as data is deprecated, please list it in `packages`. 2023-02-22T16:31:12,059 !! 2023-02-22T16:31:12,060 ############################ 2023-02-22T16:31:12,060 # Package would be ignored # 2023-02-22T16:31:12,061 ############################ 2023-02-22T16:31:12,061 Python recognizes 'metacoag_utils.support' as an importable package, 2023-02-22T16:31:12,061 but it is not listed in the `packages` configuration of setuptools. 2023-02-22T16:31:12,062 'metacoag_utils.support' has been automatically added to the distribution only 2023-02-22T16:31:12,062 because it may contain data files, but this behavior is likely to change 2023-02-22T16:31:12,063 in future versions of setuptools (and therefore is considered deprecated). 2023-02-22T16:31:12,063 Please make sure that 'metacoag_utils.support' is included as a package by using 2023-02-22T16:31:12,063 the `packages` configuration field or the proper discovery methods 2023-02-22T16:31:12,064 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-22T16:31:12,064 instead of `find_packages(...)`/`find:`). 2023-02-22T16:31:12,065 You can read more about "package discovery" and "data files" on setuptools 2023-02-22T16:31:12,065 documentation page. 2023-02-22T16:31:12,066 !! 2023-02-22T16:31:12,066 check.warn(importable) 2023-02-22T16:31:12,067 creating build/lib/metacoag_utils/auxiliary 2023-02-22T16:31:12,067 copying metacoag_utils/auxiliary/marker.hmm -> build/lib/metacoag_utils/auxiliary 2023-02-22T16:31:12,668 creating build/lib/metacoag_utils/support 2023-02-22T16:31:12,672 copying metacoag_utils/support/combine_cov.py -> build/lib/metacoag_utils/support 2023-02-22T16:31:12,678 running build_scripts 2023-02-22T16:31:12,679 creating build/scripts-3.7 2023-02-22T16:31:12,681 copying and adjusting metacoag -> build/scripts-3.7 2023-02-22T16:31:12,689 changing mode of build/scripts-3.7/metacoag from 644 to 755 2023-02-22T16:31:12,765 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-02-22T16:31:12,766 setuptools.SetuptoolsDeprecationWarning, 2023-02-22T16:31:12,831 installing to build/bdist.linux-armv7l/wheel 2023-02-22T16:31:12,832 running install 2023-02-22T16:31:12,892 running install_lib 2023-02-22T16:31:12,948 creating build/bdist.linux-armv7l 2023-02-22T16:31:12,949 creating build/bdist.linux-armv7l/wheel 2023-02-22T16:31:12,953 creating build/bdist.linux-armv7l/wheel/metacoag_utils 2023-02-22T16:31:12,954 copying build/lib/metacoag_utils/matching_utils.py -> build/bdist.linux-armv7l/wheel/metacoag_utils 2023-02-22T16:31:12,960 copying build/lib/metacoag_utils/file_utils.py -> build/bdist.linux-armv7l/wheel/metacoag_utils 2023-02-22T16:31:12,964 copying build/lib/metacoag_utils/bidirectionalmap.py -> build/bdist.linux-armv7l/wheel/metacoag_utils 2023-02-22T16:31:12,968 copying build/lib/metacoag_utils/label_prop_utils.py -> build/bdist.linux-armv7l/wheel/metacoag_utils 2023-02-22T16:31:12,974 creating build/bdist.linux-armv7l/wheel/metacoag_utils/support 2023-02-22T16:31:12,975 copying build/lib/metacoag_utils/support/combine_cov.py -> build/bdist.linux-armv7l/wheel/metacoag_utils/support 2023-02-22T16:31:12,980 copying build/lib/metacoag_utils/marker_gene_utils.py -> build/bdist.linux-armv7l/wheel/metacoag_utils 2023-02-22T16:31:12,985 creating build/bdist.linux-armv7l/wheel/metacoag_utils/auxiliary 2023-02-22T16:31:12,987 copying build/lib/metacoag_utils/auxiliary/marker.hmm -> build/bdist.linux-armv7l/wheel/metacoag_utils/auxiliary 2023-02-22T16:31:13,679 copying build/lib/metacoag_utils/graph_utils.py -> build/bdist.linux-armv7l/wheel/metacoag_utils 2023-02-22T16:31:13,684 copying build/lib/metacoag_utils/feature_utils.py -> build/bdist.linux-armv7l/wheel/metacoag_utils 2023-02-22T16:31:13,688 copying build/lib/metacoag_utils/__init__.py -> build/bdist.linux-armv7l/wheel/metacoag_utils 2023-02-22T16:31:13,691 running install_data 2023-02-22T16:31:13,752 creating build/bdist.linux-armv7l/wheel/metacoag-1.1.1.data 2023-02-22T16:31:13,753 creating build/bdist.linux-armv7l/wheel/metacoag-1.1.1.data/data 2023-02-22T16:31:13,755 copying LICENSE -> build/bdist.linux-armv7l/wheel/metacoag-1.1.1.data/data/. 2023-02-22T16:31:13,762 copying README.md -> build/bdist.linux-armv7l/wheel/metacoag-1.1.1.data/data/. 2023-02-22T16:31:13,766 running install_egg_info 2023-02-22T16:31:13,847 Copying metacoag.egg-info to build/bdist.linux-armv7l/wheel/metacoag-1.1.1-py3.7.egg-info 2023-02-22T16:31:13,876 running install_scripts 2023-02-22T16:31:13,878 creating build/bdist.linux-armv7l/wheel/metacoag-1.1.1.data/scripts 2023-02-22T16:31:13,880 copying build/scripts-3.7/metacoag -> build/bdist.linux-armv7l/wheel/metacoag-1.1.1.data/scripts 2023-02-22T16:31:13,885 changing mode of build/bdist.linux-armv7l/wheel/metacoag-1.1.1.data/scripts/metacoag to 755 2023-02-22T16:31:13,930 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-02-22T16:31:13,941 creating build/bdist.linux-armv7l/wheel/metacoag-1.1.1.dist-info/WHEEL 2023-02-22T16:31:13,946 creating '/tmp/pip-wheel-ed9lhqwf/metacoag-1.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-02-22T16:31:13,965 adding 'metacoag-1.1.1.data/data/LICENSE' 2023-02-22T16:31:13,970 adding 'metacoag-1.1.1.data/data/README.md' 2023-02-22T16:31:13,980 adding 'metacoag-1.1.1.data/scripts/metacoag' 2023-02-22T16:31:13,987 adding 'metacoag_utils/__init__.py' 2023-02-22T16:31:13,990 adding 'metacoag_utils/bidirectionalmap.py' 2023-02-22T16:31:13,993 adding 'metacoag_utils/feature_utils.py' 2023-02-22T16:31:13,997 adding 'metacoag_utils/file_utils.py' 2023-02-22T16:31:14,001 adding 'metacoag_utils/graph_utils.py' 2023-02-22T16:31:14,005 adding 'metacoag_utils/label_prop_utils.py' 2023-02-22T16:31:14,009 adding 'metacoag_utils/marker_gene_utils.py' 2023-02-22T16:31:14,013 adding 'metacoag_utils/matching_utils.py' 2023-02-22T16:31:20,571 adding 'metacoag_utils/auxiliary/marker.hmm' 2023-02-22T16:31:20,894 adding 'metacoag_utils/support/combine_cov.py' 2023-02-22T16:31:20,908 adding 'metacoag-1.1.1.dist-info/LICENSE' 2023-02-22T16:31:20,913 adding 'metacoag-1.1.1.dist-info/METADATA' 2023-02-22T16:31:20,915 adding 'metacoag-1.1.1.dist-info/WHEEL' 2023-02-22T16:31:20,917 adding 'metacoag-1.1.1.dist-info/entry_points.txt' 2023-02-22T16:31:20,919 adding 'metacoag-1.1.1.dist-info/top_level.txt' 2023-02-22T16:31:20,921 adding 'metacoag-1.1.1.dist-info/zip-safe' 2023-02-22T16:31:20,923 adding 'metacoag-1.1.1.dist-info/RECORD' 2023-02-22T16:31:21,039 removing build/bdist.linux-armv7l/wheel 2023-02-22T16:31:21,213 Building wheel for metacoag (setup.py): finished with status 'done' 2023-02-22T16:31:21,307 Created wheel for metacoag: filename=metacoag-1.1.1-py3-none-any.whl size=2959767 sha256=7b7235f9a109fa206cb0bbaba1ba56e1ce49f6df1b87c00e8d33e2e866201f87 2023-02-22T16:31:21,310 Stored in directory: /tmp/pip-ephem-wheel-cache-owk799ar/wheels/05/27/4a/81d740e02c34b36c5e60812a592ee0e499e2cb438d4e78c7c3 2023-02-22T16:31:21,344 Successfully built metacoag 2023-02-22T16:31:21,579 Removed build tracker: '/tmp/pip-build-tracker-b2yhhy5n'