2023-02-22T21:16:48,428 Created temporary directory: /tmp/pip-ephem-wheel-cache-mo2x6sp0
2023-02-22T21:16:48,431 Created temporary directory: /tmp/pip-build-tracker-kys465es
2023-02-22T21:16:48,431 Initialized build tracking at /tmp/pip-build-tracker-kys465es
2023-02-22T21:16:48,431 Created build tracker: /tmp/pip-build-tracker-kys465es
2023-02-22T21:16:48,431 Entered build tracker: /tmp/pip-build-tracker-kys465es
2023-02-22T21:16:48,432 Created temporary directory: /tmp/pip-wheel-fpe86k5q
2023-02-22T21:16:48,436 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-22T21:16:48,439 Created temporary directory: /tmp/pip-ephem-wheel-cache-av449fyi
2023-02-22T21:16:48,464 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-22T21:16:48,467 2 location(s) to search for versions of moleculekit:
2023-02-22T21:16:48,467 * https://pypi.org/simple/moleculekit/
2023-02-22T21:16:48,467 * https://www.piwheels.org/simple/moleculekit/
2023-02-22T21:16:48,467 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-02-22T21:16:48,468 Getting page https://pypi.org/simple/moleculekit/
2023-02-22T21:16:48,470 Found index url https://pypi.org/simple
2023-02-22T21:16:48,525 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-02-22T21:16:48,576   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,577   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-02-22T21:16:48,577   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,577   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-02-22T21:16:48,578   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,578   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-02-22T21:16:48,579   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,579   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-02-22T21:16:48,579   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,580   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-02-22T21:16:48,580   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,580   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-02-22T21:16:48,581   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,581   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-02-22T21:16:48,581   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,582   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-02-22T21:16:48,582   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,582   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-02-22T21:16:48,583   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,583   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-02-22T21:16:48,584   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,584   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-02-22T21:16:48,584   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,585   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-02-22T21:16:48,585   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,585   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-02-22T21:16:48,586   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,586   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-02-22T21:16:48,586   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,587   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-02-22T21:16:48,587   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,587   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-02-22T21:16:48,588   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,588   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-02-22T21:16:48,588   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,589   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-02-22T21:16:48,589   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,589   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-02-22T21:16:48,590   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,590   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-02-22T21:16:48,590   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,591   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-02-22T21:16:48,591   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,592   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-02-22T21:16:48,592   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,592   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-02-22T21:16:48,593   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,593   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-02-22T21:16:48,593   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,594   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-02-22T21:16:48,594   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,594   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-02-22T21:16:48,595   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,595   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-02-22T21:16:48,595   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,596   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-02-22T21:16:48,596   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,596   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-02-22T21:16:48,597   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,597   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-02-22T21:16:48,598   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-22T21:16:48,598   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-02-22T21:16:48,598   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-02-22T21:16:48,599   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-02-22T21:16:48,621   Found link https://files.pythonhosted.org/packages/c7/e6/72a4be7c3db86704ca264e68de620327a6c292f01b2fb9a9a186e0909622/moleculekit-0.9.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.6
2023-02-22T21:16:48,622   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2023-02-22T21:16:48,622   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2023-02-22T21:16:48,622   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2023-02-22T21:16:48,622   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
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2023-02-22T21:16:48,623   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2023-02-22T21:16:48,623   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2023-02-22T21:16:48,623   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2023-02-22T21:16:48,624   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2023-02-22T21:16:48,624   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2023-02-22T21:16:48,624   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2023-02-22T21:16:48,625   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
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2023-02-22T21:16:48,625   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2023-02-22T21:16:48,625   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2023-02-22T21:16:48,626   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2023-02-22T21:16:48,626   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2023-02-22T21:16:48,626   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2023-02-22T21:16:48,626   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2023-02-22T21:16:48,627   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2023-02-22T21:16:48,627   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2023-02-22T21:16:48,627   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2023-02-22T21:16:48,627   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2023-02-22T21:16:48,628   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2023-02-22T21:16:48,628   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2023-02-22T21:16:48,628   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2023-02-22T21:16:48,628   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2023-02-22T21:16:48,629   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2023-02-22T21:16:48,629   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2023-02-22T21:16:48,629   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2023-02-22T21:16:48,630   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2023-02-22T21:16:48,630   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2023-02-22T21:16:48,630   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2023-02-22T21:16:48,630   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2023-02-22T21:16:48,631   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2023-02-22T21:16:48,631   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2023-02-22T21:16:48,631   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2023-02-22T21:16:48,631   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2023-02-22T21:16:48,632   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2023-02-22T21:16:48,632   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2023-02-22T21:16:48,632   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2023-02-22T21:16:48,632   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2023-02-22T21:16:48,633   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2023-02-22T21:16:48,633   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2023-02-22T21:16:48,633   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2023-02-22T21:16:48,634   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2023-02-22T21:16:48,634   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2023-02-22T21:16:48,635   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2023-02-22T21:16:48,636   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2023-02-22T21:16:48,636   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2023-02-22T21:16:48,638   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2023-02-22T21:16:48,639   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2023-02-22T21:16:48,639   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2023-02-22T21:16:48,640   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2023-02-22T21:16:48,641   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2023-02-22T21:16:48,642   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2023-02-22T21:16:48,642   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2023-02-22T21:16:48,643   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2023-02-22T21:16:48,644   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2023-02-22T21:16:48,645   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2023-02-22T21:16:48,646   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2023-02-22T21:16:48,647   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2023-02-22T21:16:48,647 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-02-22T21:16:48,648 Getting page https://www.piwheels.org/simple/moleculekit/
2023-02-22T21:16:48,649 Found index url https://www.piwheels.org/simple
2023-02-22T21:16:48,812 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2023-02-22T21:16:48,860   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.8-cp39-cp39-linux_armv7l.whl#sha256=adf9e24a2a038ae1611fe2ce4e6227c0f55096c8e4b3796e7bdfaf860ef31752 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2023-02-22T21:16:48,860   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.8-cp39-cp39-linux_armv6l.whl#sha256=adf9e24a2a038ae1611fe2ce4e6227c0f55096c8e4b3796e7bdfaf860ef31752 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2023-02-22T21:16:48,860   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.7-cp39-cp39-linux_armv7l.whl#sha256=784b935ce724662b865807e16e6006c53548f55ba4e2832c419943d22a22a63b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2023-02-22T21:16:48,861   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.7-cp39-cp39-linux_armv6l.whl#sha256=784b935ce724662b865807e16e6006c53548f55ba4e2832c419943d22a22a63b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2023-02-22T21:16:48,861   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.6-cp39-cp39-linux_armv7l.whl#sha256=74f3b1d99a606d46d255c6b5bed074c5720349d2e2084e2f9c2491cd146df149 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2023-02-22T21:16:48,869   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
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2023-02-22T21:16:48,870   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,870   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
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2023-02-22T21:16:48,871   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
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2023-02-22T21:16:48,871   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,872   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
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2023-02-22T21:16:48,872   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,872   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,872   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,873   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,873   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,873   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,873   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,873   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,874   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,874   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,874   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,874   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,874   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,874   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,875   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,875   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,875   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,875   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,875   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,876   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,876   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,876   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,876   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,876   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,877   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,877   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,877   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,877   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,877   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,877   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,878   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,878   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,878   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,878   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,878   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,879   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,879   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,879   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,879   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,879   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,880   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,881   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,881   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,881   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,881   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,881   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,882   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,883   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,884   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
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2023-02-22T21:16:48,892   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
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2023-02-22T21:16:48,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
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2023-02-22T21:16:48,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
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2023-02-22T21:16:48,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,894   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2023-02-22T21:16:48,894 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-02-22T21:16:48,895 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-02-22T21:16:48,930 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-02-22T21:16:48,948 Collecting moleculekit==1.6.1
2023-02-22T21:16:48,951   Created temporary directory: /tmp/pip-unpack-iloa7ig7
2023-02-22T21:16:49,452   Downloading moleculekit-1.6.1.tar.gz (5.8 MB)
2023-02-22T21:16:53,917   Added moleculekit==1.6.1 from https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz to build tracker '/tmp/pip-build-tracker-kys465es'
2023-02-22T21:16:53,925   Created temporary directory: /tmp/pip-build-env-nv_2waar
2023-02-22T21:16:53,935   Installing build dependencies: started
2023-02-22T21:16:53,936   Running command pip subprocess to install build dependencies
2023-02-22T21:16:55,203   Using pip 23.0.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-02-22T21:16:55,784   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-22T21:16:55,825   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-22T21:16:57,497   Collecting setuptools
2023-02-22T21:16:57,597     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.4.0-py3-none-any.whl (1.1 MB)
2023-02-22T21:16:58,803   Collecting numpy>=1.18.5
2023-02-22T21:16:59,975     Using cached https://www.piwheels.org/simple/numpy/numpy-1.24.2-cp39-cp39-linux_armv7l.whl (12.3 MB)
2023-02-22T21:17:01,683   Collecting Cython>=0.29.21
2023-02-22T21:17:02,160     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.33-cp39-cp39-linux_armv7l.whl (5.0 MB)
2023-02-22T21:17:02,422   Collecting toml
2023-02-22T21:17:02,452     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-02-22T21:17:02,633   Collecting versioneer[toml]==0.26
2023-02-22T21:17:02,645     Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.26-py3-none-any.whl (44 kB)
2023-02-22T21:17:02,664        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 44.9/44.9 kB 4.0 MB/s eta 0:00:00
2023-02-22T21:17:02,791   Collecting tomli
2023-02-22T21:17:02,810     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-02-22T21:17:04,645   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-02-22T21:17:04,685     Creating /tmp/pip-build-env-nv_2waar/overlay/bin
2023-02-22T21:17:04,687     changing mode of /tmp/pip-build-env-nv_2waar/overlay/bin/versioneer to 755
2023-02-22T21:17:15,752     changing mode of /tmp/pip-build-env-nv_2waar/overlay/bin/f2py to 755
2023-02-22T21:17:15,754     changing mode of /tmp/pip-build-env-nv_2waar/overlay/bin/f2py3 to 755
2023-02-22T21:17:15,756     changing mode of /tmp/pip-build-env-nv_2waar/overlay/bin/f2py3.9 to 755
2023-02-22T21:17:18,583     changing mode of /tmp/pip-build-env-nv_2waar/overlay/bin/cygdb to 755
2023-02-22T21:17:18,585     changing mode of /tmp/pip-build-env-nv_2waar/overlay/bin/cython to 755
2023-02-22T21:17:18,587     changing mode of /tmp/pip-build-env-nv_2waar/overlay/bin/cythonize to 755
2023-02-22T21:17:18,616   Successfully installed Cython-0.29.33 numpy-1.24.2 setuptools-67.4.0 toml-0.10.2 tomli-2.0.1 versioneer-0.26
2023-02-22T21:17:19,216   Installing build dependencies: finished with status 'done'
2023-02-22T21:17:19,221   Getting requirements to build wheel: started
2023-02-22T21:17:19,222   Running command Getting requirements to build wheel
2023-02-22T21:18:02,707   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-22T21:18:02,708   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-22T21:18:02,708   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-22T21:18:02,709   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-22T21:18:02,709   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-22T21:18:02,709   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-22T21:18:02,709   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-22T21:18:02,709   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-22T21:18:02,709   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-22T21:18:02,710   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-02-22T21:18:02,710   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-22T21:18:02,710   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
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2023-02-22T21:18:02,785   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-02-22T21:18:02,785     warnings.warn(msg, _BetaConfiguration)
2023-02-22T21:18:03,074   running egg_info
2023-02-22T21:18:03,081   writing moleculekit.egg-info/PKG-INFO
2023-02-22T21:18:03,083   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-02-22T21:18:03,086   writing requirements to moleculekit.egg-info/requires.txt
2023-02-22T21:18:03,087   writing top-level names to moleculekit.egg-info/top_level.txt
2023-02-22T21:18:03,118   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-02-22T21:18:03,160   reading manifest template 'MANIFEST.in'
2023-02-22T21:18:03,432   no previously-included directories found matching 'moleculekit/test-data'
2023-02-22T21:18:03,434   no previously-included directories found matching 'moleculekit/tests'
2023-02-22T21:18:03,435   no previously-included directories found matching 'package'
2023-02-22T21:18:03,435   adding license file 'LICENSE'
2023-02-22T21:18:03,452   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-02-22T21:18:04,289   Getting requirements to build wheel: finished with status 'done'
2023-02-22T21:18:04,308   Installing backend dependencies: started
2023-02-22T21:18:04,309   Running command pip subprocess to install backend dependencies
2023-02-22T21:18:05,641   Using pip 23.0.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-02-22T21:18:06,268   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-22T21:18:06,299   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-22T21:18:06,746   Collecting wheel
2023-02-22T21:18:06,765     Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB)
2023-02-22T21:18:08,205   Installing collected packages: wheel
2023-02-22T21:18:08,387     Creating /tmp/pip-build-env-nv_2waar/normal/bin
2023-02-22T21:18:08,389     changing mode of /tmp/pip-build-env-nv_2waar/normal/bin/wheel to 755
2023-02-22T21:18:08,402   Successfully installed wheel-0.38.4
2023-02-22T21:18:08,827   Installing backend dependencies: finished with status 'done'
2023-02-22T21:18:08,830   Created temporary directory: /tmp/pip-modern-metadata-4yvcv2td
2023-02-22T21:18:08,833   Preparing metadata (pyproject.toml): started
2023-02-22T21:18:08,834   Running command Preparing metadata (pyproject.toml)
2023-02-22T21:18:10,576   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-02-22T21:18:10,576     warnings.warn(msg, _BetaConfiguration)
2023-02-22T21:18:10,839   running dist_info
2023-02-22T21:18:10,841   creating /tmp/pip-modern-metadata-4yvcv2td/moleculekit.egg-info
2023-02-22T21:18:10,848   writing /tmp/pip-modern-metadata-4yvcv2td/moleculekit.egg-info/PKG-INFO
2023-02-22T21:18:10,851   writing dependency_links to /tmp/pip-modern-metadata-4yvcv2td/moleculekit.egg-info/dependency_links.txt
2023-02-22T21:18:10,853   writing requirements to /tmp/pip-modern-metadata-4yvcv2td/moleculekit.egg-info/requires.txt
2023-02-22T21:18:10,855   writing top-level names to /tmp/pip-modern-metadata-4yvcv2td/moleculekit.egg-info/top_level.txt
2023-02-22T21:18:10,856   writing manifest file '/tmp/pip-modern-metadata-4yvcv2td/moleculekit.egg-info/SOURCES.txt'
2023-02-22T21:18:10,894   reading manifest file '/tmp/pip-modern-metadata-4yvcv2td/moleculekit.egg-info/SOURCES.txt'
2023-02-22T21:18:10,896   reading manifest template 'MANIFEST.in'
2023-02-22T21:18:11,188   no previously-included directories found matching 'moleculekit/test-data'
2023-02-22T21:18:11,189   no previously-included directories found matching 'moleculekit/tests'
2023-02-22T21:18:11,190   no previously-included directories found matching 'package'
2023-02-22T21:18:11,190   adding license file 'LICENSE'
2023-02-22T21:18:11,204   writing manifest file '/tmp/pip-modern-metadata-4yvcv2td/moleculekit.egg-info/SOURCES.txt'
2023-02-22T21:18:11,213   creating '/tmp/pip-modern-metadata-4yvcv2td/moleculekit-1.6.1.dist-info'
2023-02-22T21:18:11,420   Preparing metadata (pyproject.toml): finished with status 'done'
2023-02-22T21:18:11,427   Source in /tmp/pip-wheel-fpe86k5q/moleculekit_7ec3e00357ce4a40bea984571057885b has version 1.6.1, which satisfies requirement moleculekit==1.6.1 from https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz
2023-02-22T21:18:11,428   Removed moleculekit==1.6.1 from https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz from build tracker '/tmp/pip-build-tracker-kys465es'
2023-02-22T21:18:11,435 Created temporary directory: /tmp/pip-unpack-w5xxoa5b
2023-02-22T21:18:11,436 Building wheels for collected packages: moleculekit
2023-02-22T21:18:11,440   Created temporary directory: /tmp/pip-wheel-py_4fefz
2023-02-22T21:18:11,441   Destination directory: /tmp/pip-wheel-py_4fefz
2023-02-22T21:18:11,443   Building wheel for moleculekit (pyproject.toml): started
2023-02-22T21:18:11,444   Running command Building wheel for moleculekit (pyproject.toml)
2023-02-22T21:18:13,057   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-02-22T21:18:13,058     warnings.warn(msg, _BetaConfiguration)
2023-02-22T21:18:13,298   running bdist_wheel
2023-02-22T21:18:13,315   running build
2023-02-22T21:18:13,315   running build_py
2023-02-22T21:18:13,325   creating build
2023-02-22T21:18:13,325   creating build/lib.linux-armv7l-cpython-39
2023-02-22T21:18:13,326   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,328   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,330   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,333   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,335   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,337   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,340   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,342   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,344   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,346   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,348   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,351   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,353   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,355   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,358   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,360   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,364   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,366   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,369   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,374   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,379   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,381   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-02-22T21:18:13,382   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-02-22T21:18:13,384   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-02-22T21:18:13,385   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-02-22T21:18:13,388   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-02-22T21:18:13,389   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-02-22T21:18:13,392   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-02-22T21:18:13,395   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-02-22T21:18:13,396   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-02-22T21:18:13,398   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-02-22T21:18:13,400   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-02-22T21:18:13,403   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-02-22T21:18:13,405   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-02-22T21:18:13,409   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-02-22T21:18:13,412   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-02-22T21:18:13,413   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-02-22T21:18:13,417   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-02-22T21:18:13,420   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-02-22T21:18:13,424   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-22T21:18:13,425   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-22T21:18:13,427   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-22T21:18:13,430   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-22T21:18:13,432   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-22T21:18:13,435   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-22T21:18:13,437   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-22T21:18:13,441   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-22T21:18:13,443   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-22T21:18:13,445   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-22T21:18:13,448   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-22T21:18:13,450   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-22T21:18:13,453   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-22T21:18:13,455   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-22T21:18:13,458   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-02-22T21:18:13,459   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-02-22T21:18:13,463   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-02-22T21:18:13,466   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,467   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,469   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,472   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,475   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,478   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,480   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,483   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,485   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,488   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,490   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,493   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,495   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,498   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,501   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,503   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-22T21:18:13,505   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-02-22T21:18:13,506   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-02-22T21:18:13,508   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-02-22T21:18:13,510   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-02-22T21:18:13,513   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-02-22T21:18:13,516   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-02-22T21:18:13,516   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-02-22T21:18:13,519   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-02-22T21:18:13,522   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-02-22T21:18:13,524   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-02-22T21:18:13,527   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-02-22T21:18:13,528   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-02-22T21:18:13,529   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-02-22T21:18:13,532   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-02-22T21:18:13,533   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-02-22T21:18:13,536   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-02-22T21:18:13,538   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-02-22T21:18:13,540   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-02-22T21:18:13,543   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-02-22T21:18:13,544   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-02-22T21:18:13,546   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-02-22T21:18:13,548   running egg_info
2023-02-22T21:18:13,555   writing moleculekit.egg-info/PKG-INFO
2023-02-22T21:18:13,557   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-02-22T21:18:13,558   writing requirements to moleculekit.egg-info/requires.txt
2023-02-22T21:18:13,559   writing top-level names to moleculekit.egg-info/top_level.txt
2023-02-22T21:18:13,579   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-02-22T21:18:13,588   reading manifest template 'MANIFEST.in'
2023-02-22T21:18:13,871   no previously-included directories found matching 'moleculekit/test-data'
2023-02-22T21:18:13,872   no previously-included directories found matching 'moleculekit/tests'
2023-02-22T21:18:13,873   no previously-included directories found matching 'package'
2023-02-22T21:18:13,873   adding license file 'LICENSE'
2023-02-22T21:18:13,890   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-02-22T21:18:13,912   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.atomselect_utils' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,913       !!


2023-02-22T21:18:13,913       ############################
2023-02-22T21:18:13,913       # Package would be ignored #
2023-02-22T21:18:13,913       ############################
2023-02-22T21:18:13,913       Python recognizes 'moleculekit.atomselect_utils' as an importable package,
2023-02-22T21:18:13,914       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,914       'moleculekit.atomselect_utils' has been automatically added to the distribution only
2023-02-22T21:18:13,914       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,914       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,914       Please make sure that 'moleculekit.atomselect_utils' is included as a package by using
2023-02-22T21:18:13,914       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,914       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,915       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,915       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,915       documentation page.


2023-02-22T21:18:13,915   !!

2023-02-22T21:18:13,915     check.warn(importable)
2023-02-22T21:18:13,916   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.bondguesser_utils' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,916       !!


2023-02-22T21:18:13,916       ############################
2023-02-22T21:18:13,916       # Package would be ignored #
2023-02-22T21:18:13,916       ############################
2023-02-22T21:18:13,917       Python recognizes 'moleculekit.bondguesser_utils' as an importable package,
2023-02-22T21:18:13,917       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,917       'moleculekit.bondguesser_utils' has been automatically added to the distribution only
2023-02-22T21:18:13,917       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,917       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,917       Please make sure that 'moleculekit.bondguesser_utils' is included as a package by using
2023-02-22T21:18:13,917       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,918       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,918       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,918       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,918       documentation page.


2023-02-22T21:18:13,918   !!

2023-02-22T21:18:13,919     check.warn(importable)
2023-02-22T21:18:13,919   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.distance_utils' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,919       !!


2023-02-22T21:18:13,919       ############################
2023-02-22T21:18:13,919       # Package would be ignored #
2023-02-22T21:18:13,919       ############################
2023-02-22T21:18:13,919       Python recognizes 'moleculekit.distance_utils' as an importable package,
2023-02-22T21:18:13,920       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,920       'moleculekit.distance_utils' has been automatically added to the distribution only
2023-02-22T21:18:13,920       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,920       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,920       Please make sure that 'moleculekit.distance_utils' is included as a package by using
2023-02-22T21:18:13,920       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,920       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,920       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,921       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,921       documentation page.


2023-02-22T21:18:13,921   !!

2023-02-22T21:18:13,921     check.warn(importable)
2023-02-22T21:18:13,921   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.cationpi' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,922       !!


2023-02-22T21:18:13,922       ############################
2023-02-22T21:18:13,922       # Package would be ignored #
2023-02-22T21:18:13,922       ############################
2023-02-22T21:18:13,922       Python recognizes 'moleculekit.interactions.cationpi' as an importable package,
2023-02-22T21:18:13,922       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,923       'moleculekit.interactions.cationpi' has been automatically added to the distribution only
2023-02-22T21:18:13,923       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,923       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,923       Please make sure that 'moleculekit.interactions.cationpi' is included as a package by using
2023-02-22T21:18:13,923       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,923       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,923       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,924       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,924       documentation page.


2023-02-22T21:18:13,924   !!

2023-02-22T21:18:13,924     check.warn(importable)
2023-02-22T21:18:13,924   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.hbonds' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,925       !!


2023-02-22T21:18:13,925       ############################
2023-02-22T21:18:13,925       # Package would be ignored #
2023-02-22T21:18:13,925       ############################
2023-02-22T21:18:13,925       Python recognizes 'moleculekit.interactions.hbonds' as an importable package,
2023-02-22T21:18:13,925       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,926       'moleculekit.interactions.hbonds' has been automatically added to the distribution only
2023-02-22T21:18:13,926       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,926       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,926       Please make sure that 'moleculekit.interactions.hbonds' is included as a package by using
2023-02-22T21:18:13,926       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,926       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,926       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,927       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,927       documentation page.


2023-02-22T21:18:13,927   !!

2023-02-22T21:18:13,927     check.warn(importable)
2023-02-22T21:18:13,927   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.pipi' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,927       !!


2023-02-22T21:18:13,928       ############################
2023-02-22T21:18:13,928       # Package would be ignored #
2023-02-22T21:18:13,928       ############################
2023-02-22T21:18:13,928       Python recognizes 'moleculekit.interactions.pipi' as an importable package,
2023-02-22T21:18:13,928       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,928       'moleculekit.interactions.pipi' has been automatically added to the distribution only
2023-02-22T21:18:13,929       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,929       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,929       Please make sure that 'moleculekit.interactions.pipi' is included as a package by using
2023-02-22T21:18:13,929       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,929       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,929       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,929       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,930       documentation page.


2023-02-22T21:18:13,930   !!

2023-02-22T21:18:13,930     check.warn(importable)
2023-02-22T21:18:13,930   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.sigmahole' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,930       !!


2023-02-22T21:18:13,931       ############################
2023-02-22T21:18:13,931       # Package would be ignored #
2023-02-22T21:18:13,931       ############################
2023-02-22T21:18:13,931       Python recognizes 'moleculekit.interactions.sigmahole' as an importable package,
2023-02-22T21:18:13,931       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,931       'moleculekit.interactions.sigmahole' has been automatically added to the distribution only
2023-02-22T21:18:13,931       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,932       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,932       Please make sure that 'moleculekit.interactions.sigmahole' is included as a package by using
2023-02-22T21:18:13,932       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,932       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,932       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,932       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,932       documentation page.


2023-02-22T21:18:13,933   !!

2023-02-22T21:18:13,933     check.warn(importable)
2023-02-22T21:18:13,933   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.occupancy_utils' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,933       !!


2023-02-22T21:18:13,934       ############################
2023-02-22T21:18:13,934       # Package would be ignored #
2023-02-22T21:18:13,934       ############################
2023-02-22T21:18:13,934       Python recognizes 'moleculekit.occupancy_utils' as an importable package,
2023-02-22T21:18:13,934       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,934       'moleculekit.occupancy_utils' has been automatically added to the distribution only
2023-02-22T21:18:13,934       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,934       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,935       Please make sure that 'moleculekit.occupancy_utils' is included as a package by using
2023-02-22T21:18:13,935       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,935       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,935       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,935       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,935       documentation page.


2023-02-22T21:18:13,936   !!

2023-02-22T21:18:13,936     check.warn(importable)
2023-02-22T21:18:13,936   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.share' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,936       !!


2023-02-22T21:18:13,937       ############################
2023-02-22T21:18:13,937       # Package would be ignored #
2023-02-22T21:18:13,937       ############################
2023-02-22T21:18:13,937       Python recognizes 'moleculekit.share' as an importable package,
2023-02-22T21:18:13,937       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,937       'moleculekit.share' has been automatically added to the distribution only
2023-02-22T21:18:13,937       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,937       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,938       Please make sure that 'moleculekit.share' is included as a package by using
2023-02-22T21:18:13,938       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,938       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,938       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,938       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,938       documentation page.


2023-02-22T21:18:13,939   !!

2023-02-22T21:18:13,939     check.warn(importable)
2023-02-22T21:18:13,939   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.share.atomselect' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,939       !!


2023-02-22T21:18:13,939       ############################
2023-02-22T21:18:13,940       # Package would be ignored #
2023-02-22T21:18:13,940       ############################
2023-02-22T21:18:13,940       Python recognizes 'moleculekit.share.atomselect' as an importable package,
2023-02-22T21:18:13,940       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,940       'moleculekit.share.atomselect' has been automatically added to the distribution only
2023-02-22T21:18:13,940       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,940       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,941       Please make sure that 'moleculekit.share.atomselect' is included as a package by using
2023-02-22T21:18:13,941       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,941       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,941       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,941       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,941       documentation page.


2023-02-22T21:18:13,942   !!

2023-02-22T21:18:13,942     check.warn(importable)
2023-02-22T21:18:13,942   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.share.pdb2pqr.residues' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,942       !!


2023-02-22T21:18:13,942       ############################
2023-02-22T21:18:13,942       # Package would be ignored #
2023-02-22T21:18:13,943       ############################
2023-02-22T21:18:13,943       Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package,
2023-02-22T21:18:13,943       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,943       'moleculekit.share.pdb2pqr.residues' has been automatically added to the distribution only
2023-02-22T21:18:13,943       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,943       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,943       Please make sure that 'moleculekit.share.pdb2pqr.residues' is included as a package by using
2023-02-22T21:18:13,944       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,944       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,944       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,944       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,944       documentation page.


2023-02-22T21:18:13,944   !!

2023-02-22T21:18:13,945     check.warn(importable)
2023-02-22T21:18:13,945   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,945       !!


2023-02-22T21:18:13,945       ############################
2023-02-22T21:18:13,945       # Package would be ignored #
2023-02-22T21:18:13,945       ############################
2023-02-22T21:18:13,946       Python recognizes 'moleculekit.tmalign' as an importable package,
2023-02-22T21:18:13,946       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,946       'moleculekit.tmalign' has been automatically added to the distribution only
2023-02-22T21:18:13,946       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,946       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,946       Please make sure that 'moleculekit.tmalign' is included as a package by using
2023-02-22T21:18:13,946       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,947       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,947       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,947       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,947       documentation page.


2023-02-22T21:18:13,947   !!

2023-02-22T21:18:13,947     check.warn(importable)
2023-02-22T21:18:13,948   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign.include' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,948       !!


2023-02-22T21:18:13,948       ############################
2023-02-22T21:18:13,948       # Package would be ignored #
2023-02-22T21:18:13,948       ############################
2023-02-22T21:18:13,948       Python recognizes 'moleculekit.tmalign.include' as an importable package,
2023-02-22T21:18:13,948       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,949       'moleculekit.tmalign.include' has been automatically added to the distribution only
2023-02-22T21:18:13,949       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,949       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,949       Please make sure that 'moleculekit.tmalign.include' is included as a package by using
2023-02-22T21:18:13,949       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,949       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,949       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,950       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,950       documentation page.


2023-02-22T21:18:13,950   !!

2023-02-22T21:18:13,950     check.warn(importable)
2023-02-22T21:18:13,950   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign.src' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,951       !!


2023-02-22T21:18:13,951       ############################
2023-02-22T21:18:13,951       # Package would be ignored #
2023-02-22T21:18:13,951       ############################
2023-02-22T21:18:13,951       Python recognizes 'moleculekit.tmalign.src' as an importable package,
2023-02-22T21:18:13,952       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,952       'moleculekit.tmalign.src' has been automatically added to the distribution only
2023-02-22T21:18:13,952       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,952       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,953       Please make sure that 'moleculekit.tmalign.src' is included as a package by using
2023-02-22T21:18:13,953       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,953       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,953       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,954       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,954       documentation page.


2023-02-22T21:18:13,954   !!

2023-02-22T21:18:13,954     check.warn(importable)
2023-02-22T21:18:13,955   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.wrapping' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,955       !!


2023-02-22T21:18:13,956       ############################
2023-02-22T21:18:13,956       # Package would be ignored #
2023-02-22T21:18:13,956       ############################
2023-02-22T21:18:13,956       Python recognizes 'moleculekit.wrapping' as an importable package,
2023-02-22T21:18:13,956       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,956       'moleculekit.wrapping' has been automatically added to the distribution only
2023-02-22T21:18:13,957       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,957       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,957       Please make sure that 'moleculekit.wrapping' is included as a package by using
2023-02-22T21:18:13,957       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,957       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,958       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,958       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,958       documentation page.


2023-02-22T21:18:13,958   !!

2023-02-22T21:18:13,959     check.warn(importable)
2023-02-22T21:18:13,959   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,959       !!


2023-02-22T21:18:13,959       ############################
2023-02-22T21:18:13,959       # Package would be ignored #
2023-02-22T21:18:13,960       ############################
2023-02-22T21:18:13,960       Python recognizes 'moleculekit.xtc_utils' as an importable package,
2023-02-22T21:18:13,960       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,960       'moleculekit.xtc_utils' has been automatically added to the distribution only
2023-02-22T21:18:13,960       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,960       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,961       Please make sure that 'moleculekit.xtc_utils' is included as a package by using
2023-02-22T21:18:13,961       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,961       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,961       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,961       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,961       documentation page.


2023-02-22T21:18:13,962   !!

2023-02-22T21:18:13,962     check.warn(importable)
2023-02-22T21:18:13,962   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils.include' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,962       !!


2023-02-22T21:18:13,962       ############################
2023-02-22T21:18:13,963       # Package would be ignored #
2023-02-22T21:18:13,963       ############################
2023-02-22T21:18:13,963       Python recognizes 'moleculekit.xtc_utils.include' as an importable package,
2023-02-22T21:18:13,963       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,963       'moleculekit.xtc_utils.include' has been automatically added to the distribution only
2023-02-22T21:18:13,963       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,963       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,964       Please make sure that 'moleculekit.xtc_utils.include' is included as a package by using
2023-02-22T21:18:13,964       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,964       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,964       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,964       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,964       documentation page.


2023-02-22T21:18:13,965   !!

2023-02-22T21:18:13,965     check.warn(importable)
2023-02-22T21:18:13,967   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils.src' as data is deprecated, please list it in `packages`.
2023-02-22T21:18:13,968       !!


2023-02-22T21:18:13,970       ############################
2023-02-22T21:18:13,971       # Package would be ignored #
2023-02-22T21:18:13,971       ############################
2023-02-22T21:18:13,972       Python recognizes 'moleculekit.xtc_utils.src' as an importable package,
2023-02-22T21:18:13,973       but it is not listed in the `packages` configuration of setuptools.

2023-02-22T21:18:13,974       'moleculekit.xtc_utils.src' has been automatically added to the distribution only
2023-02-22T21:18:13,975       because it may contain data files, but this behavior is likely to change
2023-02-22T21:18:13,976       in future versions of setuptools (and therefore is considered deprecated).

2023-02-22T21:18:13,976       Please make sure that 'moleculekit.xtc_utils.src' is included as a package by using
2023-02-22T21:18:13,977       the `packages` configuration field or the proper discovery methods
2023-02-22T21:18:13,977       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-22T21:18:13,977       instead of `find_packages(...)`/`find:`).

2023-02-22T21:18:13,977       You can read more about "package discovery" and "data files" on setuptools
2023-02-22T21:18:13,977       documentation page.


2023-02-22T21:18:13,978   !!

2023-02-22T21:18:13,979     check.warn(importable)
2023-02-22T21:18:13,980   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,980   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:13,981   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-02-22T21:18:13,981   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-02-22T21:18:13,984   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-02-22T21:18:13,987   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-02-22T21:18:13,988   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-02-22T21:18:14,010   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-02-22T21:18:14,012   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-02-22T21:18:14,013   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-02-22T21:18:14,044   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-02-22T21:18:14,048   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-02-22T21:18:14,049   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-02-22T21:18:14,080   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-02-22T21:18:14,083   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-02-22T21:18:14,084   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-02-22T21:18:14,087   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-02-22T21:18:14,090   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-02-22T21:18:14,356   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-02-22T21:18:14,357   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-02-22T21:18:14,359   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-02-22T21:18:14,360   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,361   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,363   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,365   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,367   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,369   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,372   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,374   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,376   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,378   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,381   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,383   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,385   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,387   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,389   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,391   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,394   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,396   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,399   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,401   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,403   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,405   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,408   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,410   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,412   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,414   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,417   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,419   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,421   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,423   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,426   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,428   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,430   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,432   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,434   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,436   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,439   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,441   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,443   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,446   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,448   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,450   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,453   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,455   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,458   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,460   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,463   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,465   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,467   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,469   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,472   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,474   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,477   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,479   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,481   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,483   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,485   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,488   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,490   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,492   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,495   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,497   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,499   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,501   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,503   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,506   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,508   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,510   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,513   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,515   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,517   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,520   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,522   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,524   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,527   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,529   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,532   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,534   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,536   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,539   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,541   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,544   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,546   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,549   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,551   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,554   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,556   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,558   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,561   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,563   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,565   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,568   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,570   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,573   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,576   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,578   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,581   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,583   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,586   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,588   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,591   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,593   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,596   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,598   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,601   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,603   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,606   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,608   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,610   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,613   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,615   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,618   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,620   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,623   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,625   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,627   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,630   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,633   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,635   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,638   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,640   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,643   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,645   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,647   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,650   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,652   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,655   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,657   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,660   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,663   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,665   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,667   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,669   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,672   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,674   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,677   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,679   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,682   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,684   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,687   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,689   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,692   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,694   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,697   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,699   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,702   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,704   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,706   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,709   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,711   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,714   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,717   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,719   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,721   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,724   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,726   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,729   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,731   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,733   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,735   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,738   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,740   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,742   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,745   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,747   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,749   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,751   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,754   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,756   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,759   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,761   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,764   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,766   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,768   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,771   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,773   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-22T21:18:14,776   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-02-22T21:18:14,777   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-02-22T21:18:14,797   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-02-22T21:18:14,800   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-02-22T21:18:14,802   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-02-22T21:18:14,803   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-02-22T21:18:14,806   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-02-22T21:18:14,807   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-02-22T21:18:14,814   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-02-22T21:18:14,815   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-02-22T21:18:14,842   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-02-22T21:18:14,844   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-02-22T21:18:14,845   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-02-22T21:18:14,867   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-02-22T21:18:14,869   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-02-22T21:18:14,871   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-02-22T21:18:14,872   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-02-22T21:18:14,875   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-02-22T21:18:14,877   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-02-22T21:18:14,880   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-02-22T21:18:14,881   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-02-22T21:18:14,885   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-02-22T21:18:14,888   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-02-22T21:18:14,891   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-02-22T21:18:14,892   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-02-22T21:18:14,916   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-02-22T21:18:14,919   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-02-22T21:18:14,920   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-02-22T21:18:14,943   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-02-22T21:18:14,946   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-02-22T21:18:14,948   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-02-22T21:18:14,970   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-02-22T21:18:14,973   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-02-22T21:18:14,974   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-02-22T21:18:15,000   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-02-22T21:18:15,015   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-02-22T21:18:15,015   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.6.1'
2023-02-22T21:18:15,015   running build_ext
2023-02-22T21:18:15,028   building 'moleculekit.interactions.hbonds' extension
2023-02-22T21:18:15,029   creating build/temp.linux-armv7l-cpython-39
2023-02-22T21:18:15,030   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-02-22T21:18:15,031   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-02-22T21:18:15,032   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-02-22T21:18:15,034   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-02-22T21:18:15,337   In file included from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-22T21:18:15,338                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-22T21:18:15,338                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-22T21:18:15,338                    from moleculekit/interactions/hbonds/hbonds.cpp:786:
2023-02-22T21:18:15,338   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-22T21:18:15,338      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-22T21:18:15,338         |  ^~~~~~~
2023-02-22T21:18:34,491   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-02-22T21:18:34,836   building 'moleculekit.interactions.pipi' extension
2023-02-22T21:18:34,836   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-02-22T21:18:34,842   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-02-22T21:18:35,102   In file included from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-22T21:18:35,102                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-22T21:18:35,103                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-22T21:18:35,103                    from moleculekit/interactions/pipi/pipi.cpp:786:
2023-02-22T21:18:35,103   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-22T21:18:35,103      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-22T21:18:35,103         |  ^~~~~~~
2023-02-22T21:18:56,396   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-02-22T21:18:56,745   building 'moleculekit.interactions.cationpi' extension
2023-02-22T21:18:56,746   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-02-22T21:18:56,747   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-02-22T21:18:57,009   In file included from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-22T21:18:57,010                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-22T21:18:57,010                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-22T21:18:57,010                    from moleculekit/interactions/cationpi/cationpi.cpp:786:
2023-02-22T21:18:57,010   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-22T21:18:57,010      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-22T21:18:57,010         |  ^~~~~~~
2023-02-22T21:19:18,142   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-02-22T21:19:18,494   building 'moleculekit.interactions.sigmahole' extension
2023-02-22T21:19:18,494   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-02-22T21:19:18,495   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-02-22T21:19:18,786   In file included from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-22T21:19:18,787                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-22T21:19:18,787                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-22T21:19:18,787                    from moleculekit/interactions/sigmahole/sigmahole.cpp:786:
2023-02-22T21:19:18,787   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-22T21:19:18,788      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-22T21:19:18,788         |  ^~~~~~~
2023-02-22T21:19:39,669   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-02-22T21:19:40,021   building 'moleculekit.wrapping' extension
2023-02-22T21:19:40,022   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-02-22T21:19:40,022   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-02-22T21:19:40,328   In file included from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-22T21:19:40,329                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-22T21:19:40,329                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-22T21:19:40,329                    from moleculekit/wrapping/wrapping.cpp:786:
2023-02-22T21:19:40,329   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-22T21:19:40,329      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-22T21:19:40,329         |  ^~~~~~~
2023-02-22T21:19:57,834   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-02-22T21:19:58,058   building 'moleculekit.bondguesser_utils' extension
2023-02-22T21:19:58,059   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-02-22T21:19:58,059   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-02-22T21:19:58,329   In file included from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-22T21:19:58,329                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-22T21:19:58,330                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-22T21:19:58,330                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:786:
2023-02-22T21:19:58,330   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-22T21:19:58,330      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-22T21:19:58,330         |  ^~~~~~~
2023-02-22T21:19:59,528   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-02-22T21:19:59,528   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2954:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-02-22T21:19:59,528    2954 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-02-22T21:19:59,528         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-02-22T21:19:59,529   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2966:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-02-22T21:19:59,529    2966 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-02-22T21:19:59,529         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-02-22T21:19:59,529   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2978:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-02-22T21:19:59,529    2978 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-02-22T21:19:59,529         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-02-22T21:19:59,530   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3017:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,530    3017 |         __pyx_t_12 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-02-22T21:19:59,530         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,530   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3056:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,530    3056 |         __pyx_t_12 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-02-22T21:19:59,530         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,530   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3095:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,531    3095 |         __pyx_t_12 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-22T21:19:59,531         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,531   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3134:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,531    3134 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-02-22T21:19:59,531         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,531   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3140:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,531    3140 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-02-22T21:19:59,532         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,532   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3181:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,532    3181 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-02-22T21:19:59,532         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,532   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3187:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,533    3187 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-22T21:19:59,533         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,533   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3228:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,533    3228 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-02-22T21:19:59,533         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,533   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3234:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,533    3234 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-22T21:19:59,534         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,534   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3275:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,534    3275 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-02-22T21:19:59,534         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,534   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3328:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,534    3328 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-22T21:19:59,534         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,535   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3375:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,535    3375 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-22T21:19:59,535         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,535   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3416:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,535    3416 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-02-22T21:19:59,535         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,535   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3422:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,536    3422 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-02-22T21:19:59,536         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,536   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3428:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,536    3428 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-22T21:19:59,536         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,536   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3475:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,536    3475 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-02-22T21:19:59,537         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,537   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3481:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,537    3481 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-22T21:19:59,537         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,537   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3522:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,537    3522 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-02-22T21:19:59,537         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,538   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3534:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,538    3534 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-22T21:19:59,538         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,538   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3587:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-22T21:19:59,538    3587 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-22T21:19:59,538         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,565   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-02-22T21:19:59,565   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4136:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-02-22T21:19:59,565    4136 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_n_boxes) != 0);
2023-02-22T21:19:59,565         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-02-22T21:19:59,566   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4173:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-02-22T21:19:59,566    4173 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_boxidx) != 0);
2023-02-22T21:19:59,566         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-02-22T21:20:16,292   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-02-22T21:20:16,618   building 'moleculekit.atomselect_utils' extension
2023-02-22T21:20:16,619   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-02-22T21:20:16,620   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-02-22T21:20:16,883   In file included from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-22T21:20:16,884                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-22T21:20:16,884                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-22T21:20:16,884                    from moleculekit/atomselect_utils/atomselect_utils.cpp:786:
2023-02-22T21:20:16,884   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-22T21:20:16,884      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-22T21:20:16,884         |  ^~~~~~~
2023-02-22T21:20:18,251   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-02-22T21:20:18,251   moleculekit/atomselect_utils/atomselect_utils.cpp:5406:162: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-02-22T21:20:18,251    5406 |       __pyx_t_3 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum) != 0);
2023-02-22T21:20:18,252         |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-02-22T21:20:18,256   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-02-22T21:20:18,256   moleculekit/atomselect_utils/atomselect_utils.cpp:5660:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-02-22T21:20:18,257    5660 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2023-02-22T21:20:18,257         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-02-22T21:20:18,261   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-02-22T21:20:18,262   moleculekit/atomselect_utils/atomselect_utils.cpp:5926:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-02-22T21:20:18,262    5926 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2023-02-22T21:20:18,262         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-02-22T21:20:41,318   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-02-22T21:20:41,672   building 'moleculekit.distance_utils' extension
2023-02-22T21:20:41,673   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-02-22T21:20:41,674   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-02-22T21:20:41,939   In file included from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-22T21:20:41,939                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-22T21:20:41,939                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-22T21:20:41,939                    from moleculekit/distance_utils/distance_utils.cpp:786:
2023-02-22T21:20:41,939   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-22T21:20:41,939      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-22T21:20:41,940         |  ^~~~~~~
2023-02-22T21:21:04,441   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-02-22T21:21:04,795   building 'moleculekit.occupancy_utils' extension
2023-02-22T21:21:04,796   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-02-22T21:21:04,797   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-02-22T21:21:05,075   In file included from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-22T21:21:05,075                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-22T21:21:05,075                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-22T21:21:05,075                    from moleculekit/occupancy_utils/occupancy_utils.cpp:786:
2023-02-22T21:21:05,075   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-22T21:21:05,075      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-22T21:21:05,076         |  ^~~~~~~
2023-02-22T21:21:21,933   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-02-22T21:21:22,157   building 'moleculekit.xtc' extension
2023-02-22T21:21:22,158   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-02-22T21:21:22,159   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-02-22T21:21:22,160   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-02-22T21:21:22,423   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-22T21:21:22,424      66 |  "OK",
2023-02-22T21:21:22,424         |  ^~~~
2023-02-22T21:21:22,424   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-22T21:21:22,424      67 |  "Header",
2023-02-22T21:21:22,425         |  ^~~~~~~~
2023-02-22T21:21:22,425   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-22T21:21:22,425      68 |  "String",
2023-02-22T21:21:22,425         |  ^~~~~~~~
2023-02-22T21:21:22,425   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-22T21:21:22,425      69 |  "Double",
2023-02-22T21:21:22,426         |  ^~~~~~~~
2023-02-22T21:21:22,426   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-22T21:21:22,426      70 |  "Integer",
2023-02-22T21:21:22,426         |  ^~~~~~~~~
2023-02-22T21:21:22,426   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-22T21:21:22,426      71 |  "Float",
2023-02-22T21:21:22,427         |  ^~~~~~~
2023-02-22T21:21:22,427   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-22T21:21:22,427      72 |  "Unsigned integer",
2023-02-22T21:21:22,427         |  ^~~~~~~~~~~~~~~~~~
2023-02-22T21:21:22,427   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-22T21:21:22,427      73 |  "Compressed 3D coordinate",
2023-02-22T21:21:22,428         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:21:22,428   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-22T21:21:22,428      74 |  "Closing file",
2023-02-22T21:21:22,428         |  ^~~~~~~~~~~~~~
2023-02-22T21:21:22,428   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-22T21:21:22,428      75 |  "Magic number",
2023-02-22T21:21:22,429         |  ^~~~~~~~~~~~~~
2023-02-22T21:21:22,429   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-22T21:21:22,429      76 |  "Not enough memory",
2023-02-22T21:21:22,429         |  ^~~~~~~~~~~~~~~~~~~
2023-02-22T21:21:22,429   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-22T21:21:22,429      77 |  "End of file",
2023-02-22T21:21:22,430         |  ^~~~~~~~~~~~~
2023-02-22T21:21:22,430   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-22T21:21:22,430      78 |  "File not found"
2023-02-22T21:21:22,430         |  ^~~~~~~~~~~~~~~~
2023-02-22T21:21:22,438   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-02-22T21:21:22,439   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,439     459 |     while (size >= num && num_of_bits < 32)
2023-02-22T21:21:22,439         |            ~~~~~^~~~~~
2023-02-22T21:21:22,440   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-02-22T21:21:22,440   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-22T21:21:22,440     505 |     while (bytes[num_of_bytes] >= num)
2023-02-22T21:21:22,440         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-02-22T21:21:22,443   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-02-22T21:21:22,443   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,443     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-02-22T21:21:22,443         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-02-22T21:21:22,444   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,444     616 |   for (i = 0; i < num_of_bytes; i++)
2023-02-22T21:21:22,444         |               ~~^~~~~~~~~~~~~~
2023-02-22T21:21:22,445   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,445     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-02-22T21:21:22,445         |               ~~^~~~~~~~~~~~~~~~
2023-02-22T21:21:22,446   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-02-22T21:21:22,447   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-22T21:21:22,447     664 |   if (lastbits < num_of_bits)
2023-02-22T21:21:22,447         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-02-22T21:21:22,451   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-02-22T21:21:22,451   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-22T21:21:22,451     785 |  if(size3>xfp->buf1size)
2023-02-22T21:21:22,451         |     ~~~~~^~~~~~~~~~~~~~
2023-02-22T21:21:22,453   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-22T21:21:22,454     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-02-22T21:21:22,454         |                   ^
2023-02-22T21:21:22,457   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,457     932 |     if(countmjh >= size3 ) { return -1; }
2023-02-22T21:21:22,457         |        ~~~~~~~~~^~~~~~~~
2023-02-22T21:21:22,457   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,458     935 |     if(countmjh >= size3 ) { return -1; }
2023-02-22T21:21:22,458         |        ~~~~~~~~~^~~~~~~~
2023-02-22T21:21:22,458   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,458     938 |     if(countmjh >= size3 ) { return -1; }
2023-02-22T21:21:22,458         |        ~~~~~~~~~^~~~~~~~
2023-02-22T21:21:22,459   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,459     945 |     if(countmjh >= size3 ) { return -1; }
2023-02-22T21:21:22,459         |        ~~~~~~~~~^~~~~~~~
2023-02-22T21:21:22,460   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,460     948 |     if(countmjh >= size3 ) { return -1; }
2023-02-22T21:21:22,460         |        ~~~~~~~~~^~~~~~~~
2023-02-22T21:21:22,460   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,461     951 |     if(countmjh >= size3 ) { return -1; }
2023-02-22T21:21:22,461         |        ~~~~~~~~~^~~~~~~~
2023-02-22T21:21:22,462   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-02-22T21:21:22,462     756 |  int smallidx,  minidx, maxidx;
2023-02-22T21:21:22,462         |                 ^~~~~~
2023-02-22T21:21:22,462   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-02-22T21:21:22,462     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-02-22T21:21:22,462         |                         ^~~~~~
2023-02-22T21:21:22,463   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-02-22T21:21:22,463     763 |  int errval=1;
2023-02-22T21:21:22,463         |      ^~~~~~
2023-02-22T21:21:22,466   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-02-22T21:21:22,466   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-22T21:21:22,466    1011 |  if(size3>xfp->buf1size)
2023-02-22T21:21:22,466         |     ~~~~~^~~~~~~~~~~~~~
2023-02-22T21:21:22,468   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,469    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-02-22T21:21:22,469         |                     ~~~~~~~~^~~~~~~
2023-02-22T21:21:22,470   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,470    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-02-22T21:21:22,470         |                    ~~~~~~~~^~~~~~~
2023-02-22T21:21:22,471   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,471    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-02-22T21:21:22,471         |                    ~~~~~~~~^~~~~~~
2023-02-22T21:21:22,473   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,473    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-02-22T21:21:22,473         |                  ^
2023-02-22T21:21:22,474   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-22T21:21:22,474    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-02-22T21:21:22,474         |                   ^
2023-02-22T21:21:22,479   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,479    1275 |  if(tmp==(unsigned int)buf2[0])
2023-02-22T21:21:22,479         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:21:22,479   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-02-22T21:21:22,479    1001 |  int errval;
2023-02-22T21:21:22,479         |      ^~~~~~
2023-02-22T21:21:22,483   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-02-22T21:21:22,483   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-22T21:21:22,483    1316 |  if(size3>xfp->buf1size)
2023-02-22T21:21:22,483         |     ~~~~~^~~~~~~~~~~~~~
2023-02-22T21:21:22,486   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-22T21:21:22,486    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-02-22T21:21:22,486         |                   ^
2023-02-22T21:21:22,489   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-02-22T21:21:22,489    1289 |  int smallidx,  maxidx, minidx;
2023-02-22T21:21:22,489         |                         ^~~~~~
2023-02-22T21:21:22,490   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-02-22T21:21:22,490    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-02-22T21:21:22,490         |                         ^~~~~~
2023-02-22T21:21:22,490   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-02-22T21:21:22,490    1297 |  int errval=1;
2023-02-22T21:21:22,490         |      ^~~~~~
2023-02-22T21:21:22,493   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-02-22T21:21:22,493   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-22T21:21:22,493    1513 |  if(size3>xfp->buf1size) {
2023-02-22T21:21:22,493         |     ~~~~~^~~~~~~~~~~~~~
2023-02-22T21:21:22,498   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,498    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-02-22T21:21:22,498         |                  ^
2023-02-22T21:21:22,499   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-22T21:21:22,499    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-02-22T21:21:22,499         |                   ^
2023-02-22T21:21:22,503   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-22T21:21:22,504    1743 |  if(tmp==(unsigned int)buf2[0])
2023-02-22T21:21:22,504         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:21:22,504   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-02-22T21:21:22,504    1504 |  int errval=1;
2023-02-22T21:21:22,504         |      ^~~~~~
2023-02-22T21:21:24,754   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-02-22T21:21:25,028   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-02-22T21:21:25,637   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-02-22T21:21:25,638   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-02-22T21:21:25,638     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-02-22T21:21:25,638         |      ^~~
2023-02-22T21:21:25,644   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-02-22T21:21:25,644   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-02-22T21:21:25,645     418 |  int nf3 = nframes * 3;
2023-02-22T21:21:25,645         |      ^~~
2023-02-22T21:21:25,649   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-02-22T21:21:25,649   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-02-22T21:21:25,649     491 |  int reading_index = 0;
2023-02-22T21:21:25,649         |      ^~~~~~~~~~~~~
2023-02-22T21:21:25,650   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-02-22T21:21:25,650     492 |  int writing_index = 0;
2023-02-22T21:21:25,650         |      ^~~~~~~~~~~~~
2023-02-22T21:21:26,228   moleculekit/xtc_utils/src/xtc.cpp:532:20: warning: ‘garbage_natoms’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-02-22T21:21:26,228     532 |   frames = xtc_read(filename, garbage_natoms, &traj_nframes, &dt, &dstep);
2023-02-22T21:21:26,228         |            ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-02-22T21:21:26,423   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-02-22T21:21:26,691   In file included from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-22T21:21:26,692                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-22T21:21:26,692                    from /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-22T21:21:26,692                    from moleculekit/xtc_utils/xtc.cpp:788:
2023-02-22T21:21:26,692   /tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-22T21:21:26,692      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-22T21:21:26,692         |  ^~~~~~~
2023-02-22T21:21:41,685   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-02-22T21:21:42,027   building 'moleculekit.tmalign' extension
2023-02-22T21:21:42,028   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-02-22T21:21:42,028   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-02-22T21:21:42,030   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-02-22T21:22:11,913   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-nv_2waar/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-02-22T21:22:24,466   In file included from /usr/include/c++/10/vector:72,
2023-02-22T21:22:24,466                    from moleculekit/tmalign/tmalign_util.cpp:802:
2023-02-22T21:22:24,466   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-02-22T21:22:24,466   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-02-22T21:22:24,466     426 |       vector<_Tp, _Alloc>::
2023-02-22T21:22:24,467         |       ^~~~~~~~~~~~~~~~~~~
2023-02-22T21:22:24,960   In file included from /usr/include/c++/10/vector:67,
2023-02-22T21:22:24,961                    from moleculekit/tmalign/tmalign_util.cpp:802:
2023-02-22T21:22:24,961   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject*, PyObject*)’:
2023-02-22T21:22:24,961   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-02-22T21:22:24,961    1198 |    _M_realloc_insert(end(), __x);
2023-02-22T21:22:24,961         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-02-22T21:22:24,961   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-02-22T21:22:24,962    1198 |    _M_realloc_insert(end(), __x);
2023-02-22T21:22:24,962         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-02-22T21:22:24,962   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-02-22T21:22:24,963    1198 |    _M_realloc_insert(end(), __x);
2023-02-22T21:22:24,963         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-02-22T21:22:27,119   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-02-22T21:22:27,622   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-02-22T21:22:27,622   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.6.1'
2023-02-22T21:22:27,623   installing to build/bdist.linux-armv7l/wheel
2023-02-22T21:22:27,623   running install
2023-02-22T21:22:27,648   running install_lib
2023-02-22T21:22:27,655   creating build/bdist.linux-armv7l
2023-02-22T21:22:27,656   creating build/bdist.linux-armv7l/wheel
2023-02-22T21:22:27,658   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:27,659   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:27,695   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:27,697   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:27,700   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-02-22T21:22:27,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-02-22T21:22:27,722   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-02-22T21:22:27,724   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:27,728   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-02-22T21:22:27,729   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-02-22T21:22:27,731   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-02-22T21:22:27,753   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-02-22T21:22:27,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-02-22T21:22:27,756   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-02-22T21:22:27,759   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-02-22T21:22:27,762   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-02-22T21:22:27,765   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-02-22T21:22:27,766   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-02-22T21:22:27,768   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-02-22T21:22:27,770   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-02-22T21:22:27,773   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:27,804   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:27,806   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:27,809   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:27,811   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:27,813   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:27,815   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-02-22T21:22:27,816   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-02-22T21:22:27,838   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-02-22T21:22:27,841   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-02-22T21:22:27,842   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-02-22T21:22:27,844   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-02-22T21:22:27,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-02-22T21:22:27,847   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-02-22T21:22:27,849   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-02-22T21:22:27,852   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-02-22T21:22:27,855   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-02-22T21:22:27,856   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-02-22T21:22:27,859   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-02-22T21:22:27,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-02-22T21:22:27,863   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-02-22T21:22:27,867   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-02-22T21:22:27,868   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-02-22T21:22:27,869   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-02-22T21:22:27,872   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-02-22T21:22:27,873   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-02-22T21:22:27,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-02-22T21:22:27,877   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-02-22T21:22:27,880   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-02-22T21:22:27,883   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:27,885   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-02-22T21:22:27,886   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-02-22T21:22:27,890   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-02-22T21:22:27,893   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-02-22T21:22:27,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-02-22T21:22:27,896   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-02-22T21:22:27,899   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-02-22T21:22:27,902   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-02-22T21:22:27,905   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-02-22T21:22:27,908   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-02-22T21:22:27,911   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-02-22T21:22:27,916   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-02-22T21:22:27,920   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-02-22T21:22:27,922   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-02-22T21:22:27,924   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-02-22T21:22:27,928   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-02-22T21:22:27,935   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,937   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,941   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,944   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,951   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,955   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,958   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,961   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,965   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,968   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,972   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,978   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,985   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,989   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,992   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,996   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:27,999   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,003   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,006   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,010   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,013   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,016   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,018   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,021   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,024   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,027   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,030   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,032   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,035   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,038   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,040   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,042   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,045   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,047   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,049   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,051   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,053   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,058   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,062   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,064   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,067   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,069   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,071   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,073   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,078   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,080   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,084   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,087   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,089   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,093   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,095   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,098   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,100   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,103   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,112   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,115   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,117   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,120   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,125   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,127   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,130   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,138   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,140   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,143   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,158   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,160   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,169   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,171   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,174   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,177   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,184   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,187   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,189   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,191   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,194   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,197   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,199   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,202   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,208   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,213   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,218   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,222   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,224   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,226   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,228   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,230   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,232   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,234   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,236   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,238   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,240   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,242   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,244   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,246   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,248   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,250   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,254   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,255   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,257   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,259   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,261   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,263   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,265   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,267   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,274   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,276   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,277   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,279   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,282   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,284   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,288   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,290   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,298   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,302   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,304   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,306   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,308   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,310   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,313   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,315   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,317   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,319   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,321   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,323   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,325   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,327   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,329   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,331   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,334   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,335   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,337   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,339   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,341   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,343   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,345   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,347   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,349   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,351   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,353   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,355   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-22T21:22:28,357   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-02-22T21:22:28,359   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-02-22T21:22:28,361   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-02-22T21:22:28,610   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-02-22T21:22:28,611   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-02-22T21:22:28,615   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-02-22T21:22:28,617   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-02-22T21:22:28,620   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:28,624   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-22T21:22:28,625   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-22T21:22:28,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-22T21:22:28,629   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-22T21:22:28,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-22T21:22:28,635   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-22T21:22:28,637   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-22T21:22:28,641   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-22T21:22:28,643   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-22T21:22:28,645   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-22T21:22:28,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-22T21:22:28,651   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-02-22T21:22:28,651   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-02-22T21:22:28,653   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-02-22T21:22:28,655   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-22T21:22:28,658   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-22T21:22:28,660   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-22T21:22:28,663   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:28,664   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:28,667   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:28,740   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:28,764   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:28,766   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:28,788   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:28,791   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-02-22T21:22:28,792   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-02-22T21:22:28,795   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-02-22T21:22:28,824   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-02-22T21:22:28,850   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-02-22T21:22:28,851   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-02-22T21:22:28,854   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-02-22T21:22:28,875   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-02-22T21:22:28,904   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-02-22T21:22:28,906   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-02-22T21:22:28,938   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-02-22T21:22:28,939   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-02-22T21:22:28,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-02-22T21:22:28,961   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-02-22T21:22:28,963   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-02-22T21:22:28,984   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-02-22T21:22:28,987   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-02-22T21:22:28,988   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-02-22T21:22:28,990   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-02-22T21:22:29,015   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:29,018   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:29,020   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:29,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:29,028   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:29,031   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:29,039   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,040   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,042   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,045   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,051   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,054   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,057   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,059   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,063   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,065   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,068   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,071   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,077   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-22T21:22:29,084   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:29,121   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-02-22T21:22:29,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-02-22T21:22:29,125   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-02-22T21:22:29,127   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-02-22T21:22:29,128   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-02-22T21:22:29,136   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-02-22T21:22:29,156   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-02-22T21:22:29,157   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-02-22T21:22:29,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:29,164   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:29,166   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-22T21:22:29,190   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-02-22T21:22:29,191   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-02-22T21:22:29,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-02-22T21:22:29,217   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-02-22T21:22:29,218   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-02-22T21:22:29,253   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-02-22T21:22:29,256   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-02-22T21:22:29,258   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-02-22T21:22:29,284   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-02-22T21:22:29,287   running install_egg_info
2023-02-22T21:22:29,294   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.6.1-py3.9.egg-info
2023-02-22T21:22:29,309   running install_scripts
2023-02-22T21:22:29,362   creating build/bdist.linux-armv7l/wheel/moleculekit-1.6.1.dist-info/WHEEL
2023-02-22T21:22:29,365   creating '/tmp/pip-wheel-py_4fefz/.tmp-5s67p7ks/moleculekit-1.6.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-02-22T21:22:29,369   adding 'moleculekit/__init__.py'
2023-02-22T21:22:29,370   adding 'moleculekit/_version.py'
2023-02-22T21:22:29,372   adding 'moleculekit/align.py'
2023-02-22T21:22:29,670   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-02-22T21:22:29,681   adding 'moleculekit/bondguesser.py'
2023-02-22T21:22:29,897   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-02-22T21:22:29,905   adding 'moleculekit/config.py'
2023-02-22T21:22:29,907   adding 'moleculekit/dihedral.py'
2023-02-22T21:22:30,176   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-02-22T21:22:30,186   adding 'moleculekit/home.py'
2023-02-22T21:22:30,187   adding 'moleculekit/logging.ini'
2023-02-22T21:22:30,201   adding 'moleculekit/molecule.py'
2023-02-22T21:22:30,403   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-02-22T21:22:30,411   adding 'moleculekit/opm.py'
2023-02-22T21:22:30,413   adding 'moleculekit/periodictable.py'
2023-02-22T21:22:30,415   adding 'moleculekit/pymolgraphics.py'
2023-02-22T21:22:30,416   adding 'moleculekit/rcsb.py'
2023-02-22T21:22:30,418   adding 'moleculekit/rdkitintegration.py'
2023-02-22T21:22:30,430   adding 'moleculekit/readers.py'
2023-02-22T21:22:31,016   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-02-22T21:22:31,040   adding 'moleculekit/util.py'
2023-02-22T21:22:31,041   adding 'moleculekit/version.py'
2023-02-22T21:22:31,043   adding 'moleculekit/viewer.py'
2023-02-22T21:22:31,044   adding 'moleculekit/vmd_wrapper'
2023-02-22T21:22:31,046   adding 'moleculekit/vmdgraphics.py'
2023-02-22T21:22:31,049   adding 'moleculekit/vmdviewer.py'
2023-02-22T21:22:31,256   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-02-22T21:22:31,268   adding 'moleculekit/writers.py'
2023-02-22T21:22:31,509   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-02-22T21:22:31,518   adding 'moleculekit/atomselect/__init__.py'
2023-02-22T21:22:31,519   adding 'moleculekit/atomselect/analyze.py'
2023-02-22T21:22:31,522   adding 'moleculekit/atomselect/atomselect.py'
2023-02-22T21:22:31,524   adding 'moleculekit/atomselect/languageparser.py'
2023-02-22T21:22:31,609   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-02-22T21:22:31,619   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-02-22T21:22:31,691   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-02-22T21:22:31,699   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-02-22T21:22:31,776   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-02-22T21:22:31,784   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-02-22T21:22:31,786   adding 'moleculekit/interactions/__init__.py'
2023-02-22T21:22:32,040   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-02-22T21:22:32,280   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-02-22T21:22:32,290   adding 'moleculekit/interactions/interactions.py'
2023-02-22T21:22:32,543   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-02-22T21:22:32,803   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-02-22T21:22:32,884   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-02-22T21:22:32,892   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-02-22T21:22:32,964   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-02-22T21:22:32,972   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-02-22T21:22:33,045   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-02-22T21:22:33,053   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-02-22T21:22:33,125   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-02-22T21:22:33,133   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-02-22T21:22:33,201   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-02-22T21:22:33,208   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-02-22T21:22:33,210   adding 'moleculekit/pdbx/__init__.py'
2023-02-22T21:22:33,214   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-02-22T21:22:33,217   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-02-22T21:22:33,220   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-02-22T21:22:33,221   adding 'moleculekit/pdbx/reader/__init__.py'
2023-02-22T21:22:33,223   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-02-22T21:22:33,225   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-02-22T21:22:33,226   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-02-22T21:22:33,227   adding 'moleculekit/pdbx/tests/__init__.py'
2023-02-22T21:22:33,230   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-02-22T21:22:33,231   adding 'moleculekit/pdbx/writer/__init__.py'
2023-02-22T21:22:33,233   adding 'moleculekit/ply/__init__.py'
2023-02-22T21:22:33,237   adding 'moleculekit/ply/lex.py'
2023-02-22T21:22:33,249   adding 'moleculekit/ply/yacc.py'
2023-02-22T21:22:33,251   adding 'moleculekit/projections/__init__.py'
2023-02-22T21:22:33,253   adding 'moleculekit/projections/metriccoordinate.py'
2023-02-22T21:22:33,257   adding 'moleculekit/projections/metricdihedral.py'
2023-02-22T21:22:33,261   adding 'moleculekit/projections/metricdistance.py'
2023-02-22T21:22:33,263   adding 'moleculekit/projections/metricfluctuation.py'
2023-02-22T21:22:33,265   adding 'moleculekit/projections/metricgyration.py'
2023-02-22T21:22:33,269   adding 'moleculekit/projections/metricplumed2.py'
2023-02-22T21:22:33,271   adding 'moleculekit/projections/metricrmsd.py'
2023-02-22T21:22:33,273   adding 'moleculekit/projections/metricsasa.py'
2023-02-22T21:22:33,275   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-02-22T21:22:33,277   adding 'moleculekit/projections/metricshell.py'
2023-02-22T21:22:33,279   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-02-22T21:22:33,280   adding 'moleculekit/projections/metrictmscore.py'
2023-02-22T21:22:33,281   adding 'moleculekit/projections/projection.py'
2023-02-22T21:22:33,283   adding 'moleculekit/projections/util.py'
2023-02-22T21:22:33,285   adding 'moleculekit/share/ALA.cif'
2023-02-22T21:22:33,287   adding 'moleculekit/share/backbone.cif'
2023-02-22T21:22:34,610   adding 'moleculekit/share/opm_sequences.json'
2023-02-22T21:22:34,695   adding 'moleculekit/share/atomselect/atomselect.json'
2023-02-22T21:22:34,701   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-02-22T21:22:34,702   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-02-22T21:22:34,703   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-02-22T21:22:34,705   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-02-22T21:22:34,706   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-02-22T21:22:34,707   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-02-22T21:22:34,709   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-02-22T21:22:34,710   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-02-22T21:22:34,711   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-02-22T21:22:34,712   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-02-22T21:22:34,714   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-02-22T21:22:34,715   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-02-22T21:22:34,716   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-02-22T21:22:34,718   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-02-22T21:22:34,719   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-02-22T21:22:34,720   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-02-22T21:22:34,721   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-02-22T21:22:34,723   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-02-22T21:22:34,724   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-02-22T21:22:34,725   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-02-22T21:22:34,727   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-02-22T21:22:34,728   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-02-22T21:22:34,729   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-02-22T21:22:34,730   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-02-22T21:22:34,732   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-02-22T21:22:34,733   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-02-22T21:22:34,734   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-02-22T21:22:34,736   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-02-22T21:22:34,737   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-02-22T21:22:34,738   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-02-22T21:22:34,739   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-02-22T21:22:34,741   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-02-22T21:22:34,742   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-02-22T21:22:34,743   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-02-22T21:22:34,744   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-02-22T21:22:34,746   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-02-22T21:22:34,747   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-02-22T21:22:34,748   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-02-22T21:22:34,750   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-02-22T21:22:34,751   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-02-22T21:22:34,753   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-02-22T21:22:34,754   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-02-22T21:22:34,755   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-02-22T21:22:34,756   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-02-22T21:22:34,758   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-02-22T21:22:34,759   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-02-22T21:22:34,760   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-02-22T21:22:34,762   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-02-22T21:22:34,763   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-02-22T21:22:34,764   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-02-22T21:22:34,766   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-02-22T21:22:34,767   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-02-22T21:22:34,768   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-02-22T21:22:34,770   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-02-22T21:22:34,771   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-02-22T21:22:34,772   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-02-22T21:22:34,773   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-02-22T21:22:34,775   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-02-22T21:22:34,776   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-02-22T21:22:34,777   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-02-22T21:22:34,778   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-02-22T21:22:34,780   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-02-22T21:22:34,781   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-02-22T21:22:34,783   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-02-22T21:22:34,784   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-02-22T21:22:34,785   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-02-22T21:22:34,787   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-02-22T21:22:34,788   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-02-22T21:22:34,789   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-02-22T21:22:34,790   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-02-22T21:22:34,792   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-02-22T21:22:34,793   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-02-22T21:22:34,794   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-02-22T21:22:34,796   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-02-22T21:22:34,797   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-02-22T21:22:34,798   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-02-22T21:22:34,799   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-02-22T21:22:34,801   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-02-22T21:22:34,802   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-02-22T21:22:34,803   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-02-22T21:22:34,805   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-02-22T21:22:34,806   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-02-22T21:22:34,807   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-02-22T21:22:34,809   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-02-22T21:22:34,810   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-02-22T21:22:34,811   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-02-22T21:22:34,813   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-02-22T21:22:34,814   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-02-22T21:22:34,815   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-02-22T21:22:34,817   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-02-22T21:22:34,818   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-02-22T21:22:34,819   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-02-22T21:22:34,821   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-02-22T21:22:34,822   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-02-22T21:22:34,823   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-02-22T21:22:34,824   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-02-22T21:22:34,826   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-02-22T21:22:34,827   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-02-22T21:22:34,831   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-02-22T21:22:34,832   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-02-22T21:22:34,834   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-02-22T21:22:34,835   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-02-22T21:22:34,836   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-02-22T21:22:34,838   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-02-22T21:22:34,839   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-02-22T21:22:34,840   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-02-22T21:22:34,841   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-02-22T21:22:34,843   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-02-22T21:22:34,844   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-02-22T21:22:34,846   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-02-22T21:22:34,847   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-02-22T21:22:34,848   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-02-22T21:22:34,849   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-02-22T21:22:34,851   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-02-22T21:22:34,852   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-02-22T21:22:34,854   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-02-22T21:22:34,855   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-02-22T21:22:34,856   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-02-22T21:22:34,858   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-02-22T21:22:34,859   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-02-22T21:22:34,860   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-02-22T21:22:34,862   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-02-22T21:22:34,863   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-02-22T21:22:34,864   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-02-22T21:22:34,866   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-02-22T21:22:34,867   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-02-22T21:22:34,868   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-02-22T21:22:34,870   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-02-22T21:22:34,871   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-02-22T21:22:34,872   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-02-22T21:22:34,874   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-02-22T21:22:34,875   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-02-22T21:22:34,876   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-02-22T21:22:34,877   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-02-22T21:22:34,879   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-02-22T21:22:34,880   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-02-22T21:22:34,881   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-02-22T21:22:34,883   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-02-22T21:22:34,884   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-02-22T21:22:34,885   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-02-22T21:22:34,886   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-02-22T21:22:34,888   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-02-22T21:22:34,889   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-02-22T21:22:34,890   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-02-22T21:22:34,892   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-02-22T21:22:34,893   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-02-22T21:22:34,894   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-02-22T21:22:34,895   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-02-22T21:22:34,897   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-02-22T21:22:34,898   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-02-22T21:22:34,899   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-02-22T21:22:34,900   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-02-22T21:22:34,902   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-02-22T21:22:34,903   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-02-22T21:22:34,905   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-02-22T21:22:34,906   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-02-22T21:22:34,907   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-02-22T21:22:34,909   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-02-22T21:22:34,910   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-02-22T21:22:34,911   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-02-22T21:22:34,913   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-02-22T21:22:34,914   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-02-22T21:22:34,916   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-02-22T21:22:34,917   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-02-22T21:22:34,918   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-02-22T21:22:34,919   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-02-22T21:22:34,921   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-02-22T21:22:34,922   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-02-22T21:22:34,924   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-02-22T21:22:34,925   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-02-22T21:22:34,926   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-02-22T21:22:34,927   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-02-22T21:22:34,929   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-02-22T21:22:34,930   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-02-22T21:22:34,931   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-02-22T21:22:34,933   adding 'moleculekit/smallmol/__init__.py'
2023-02-22T21:22:34,938   adding 'moleculekit/smallmol/smallmol.py'
2023-02-22T21:22:34,941   adding 'moleculekit/smallmol/smallmollib.py'
2023-02-22T21:22:34,943   adding 'moleculekit/smallmol/test_smallmol.py'
2023-02-22T21:22:34,945   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-02-22T21:22:34,947   adding 'moleculekit/smallmol/util.py'
2023-02-22T21:22:34,949   adding 'moleculekit/smallmol/tools/__init__.py'
2023-02-22T21:22:34,951   adding 'moleculekit/smallmol/tools/clustering.py'
2023-02-22T21:22:34,953   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-02-22T21:22:34,954   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-02-22T21:22:35,026   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-02-22T21:22:35,033   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-02-22T21:22:35,034   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-02-22T21:22:35,036   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-02-22T21:22:35,054   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-02-22T21:22:35,057   adding 'moleculekit/tools/__init__.py'
2023-02-22T21:22:35,059   adding 'moleculekit/tools/atomtyper.py'
2023-02-22T21:22:35,062   adding 'moleculekit/tools/autosegment.py'
2023-02-22T21:22:35,064   adding 'moleculekit/tools/crystalpacking.py'
2023-02-22T21:22:35,066   adding 'moleculekit/tools/detect.py'
2023-02-22T21:22:35,068   adding 'moleculekit/tools/docking.py'
2023-02-22T21:22:35,070   adding 'moleculekit/tools/graphalignment.py'
2023-02-22T21:22:35,072   adding 'moleculekit/tools/hhblitsprofile.py'
2023-02-22T21:22:35,074   adding 'moleculekit/tools/moleculechecks.py'
2023-02-22T21:22:35,080   adding 'moleculekit/tools/preparation.py'
2023-02-22T21:22:35,083   adding 'moleculekit/tools/preparation_customres.py'
2023-02-22T21:22:35,085   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-02-22T21:22:35,088   adding 'moleculekit/tools/voxeldescriptors.py'
2023-02-22T21:22:35,090   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-02-22T21:22:35,091   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-02-22T21:22:35,161   adding 'moleculekit/wrapping/wrapping.cpp'
2023-02-22T21:22:35,168   adding 'moleculekit/wrapping/wrapping.pyx'
2023-02-22T21:22:35,239   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-02-22T21:22:35,246   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-02-22T21:22:35,248   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-02-22T21:22:35,251   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-02-22T21:22:35,252   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-02-22T21:22:35,254   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-02-22T21:22:35,261   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-02-22T21:22:35,263   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-02-22T21:22:35,265   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-02-22T21:22:35,268   adding 'moleculekit-1.6.1.dist-info/LICENSE'
2023-02-22T21:22:35,269   adding 'moleculekit-1.6.1.dist-info/METADATA'
2023-02-22T21:22:35,270   adding 'moleculekit-1.6.1.dist-info/WHEEL'
2023-02-22T21:22:35,271   adding 'moleculekit-1.6.1.dist-info/top_level.txt'
2023-02-22T21:22:35,276   adding 'moleculekit-1.6.1.dist-info/RECORD'
2023-02-22T21:22:35,449   removing build/bdist.linux-armv7l/wheel
2023-02-22T21:22:35,746   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-02-22T21:22:36,019   Created wheel for moleculekit: filename=moleculekit-1.6.1-cp39-cp39-linux_armv7l.whl size=11483840 sha256=68aa1c15bea750b58b31afe18d0eab987062c34ca73f66376ecf89fd4106324b
2023-02-22T21:22:36,020   Stored in directory: /tmp/pip-ephem-wheel-cache-av449fyi/wheels/e5/79/25/244a43907a4e2934594c6c9a0f4eef5f33fb3dae24940c708e
2023-02-22T21:22:36,049 Successfully built moleculekit
2023-02-22T21:22:36,409 Removed build tracker: '/tmp/pip-build-tracker-kys465es'