2023-02-23T00:24:01,313 Created temporary directory: /tmp/pip-ephem-wheel-cache-vl3v4w88
2023-02-23T00:24:01,319 Created temporary directory: /tmp/pip-build-tracker-z39farxu
2023-02-23T00:24:01,320 Initialized build tracking at /tmp/pip-build-tracker-z39farxu
2023-02-23T00:24:01,320 Created build tracker: /tmp/pip-build-tracker-z39farxu
2023-02-23T00:24:01,320 Entered build tracker: /tmp/pip-build-tracker-z39farxu
2023-02-23T00:24:01,322 Created temporary directory: /tmp/pip-wheel-y1t5g8od
2023-02-23T00:24:01,332 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-23T00:24:01,338 Created temporary directory: /tmp/pip-ephem-wheel-cache-4q822mqd
2023-02-23T00:24:01,449 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-23T00:24:01,456 2 location(s) to search for versions of mitos:
2023-02-23T00:24:01,456 * https://pypi.org/simple/mitos/
2023-02-23T00:24:01,456 * https://www.piwheels.org/simple/mitos/
2023-02-23T00:24:01,457 Fetching project page and analyzing links: https://pypi.org/simple/mitos/
2023-02-23T00:24:01,459 Getting page https://pypi.org/simple/mitos/
2023-02-23T00:24:01,462 Found index url https://pypi.org/simple
2023-02-23T00:24:01,703 Fetched page https://pypi.org/simple/mitos/ as application/vnd.pypi.simple.v1+json
2023-02-23T00:24:01,714   Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/ae/2d/5f1e66a046e59cf6088f44d4a02cae66d498e226365af5fd42e2d660a814/mitos-1.0-py2-none-any.whl (from https://pypi.org/simple/mitos/)
2023-02-23T00:24:01,715   Found link https://files.pythonhosted.org/packages/c5/6e/e1aae4079b0ebbce64897f54f5cd4a3953a0cb741026d16e14e7ae272a48/mitos-1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0
2023-02-23T00:24:01,715   Found link https://files.pythonhosted.org/packages/d7/19/816780e09ecc6a783f146d80bcde73eb7940d074f4feea137ec954bfd437/mitos-1.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.1
2023-02-23T00:24:01,716   Found link https://files.pythonhosted.org/packages/38/c7/3dd90bcf0d61c69226ef1632baa3ad0e96d798de36053b4b56ed7660dfdb/mitos-1.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.2
2023-02-23T00:24:01,717   Found link https://files.pythonhosted.org/packages/e2/d4/864af2605cc1f45cc78cfed740bbdfba1da59ea9a42c24ef5077c9218501/mitos-1.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.3
2023-02-23T00:24:01,718   Found link https://files.pythonhosted.org/packages/8d/32/1aa5eb88f964c3cf5441622648cc4ae30f115db32bdd5dc5bf194a3c112c/mitos-1.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.4
2023-02-23T00:24:01,718   Found link https://files.pythonhosted.org/packages/ff/49/f4c711126604aa86abeeda44378786a0903bc53970acf4afa5feb68f72b8/mitos-1.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.5
2023-02-23T00:24:01,719   Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/c3/cd/96e0e1ad1551b8fff56ab89e61231809494dec3ee80f51117b4f5d432452/mitos-1.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/)
2023-02-23T00:24:01,719   Found link https://files.pythonhosted.org/packages/ce/33/46fd40fd9f4c11f5bf296c2c092f59e36dee233d71a0f032b34c2a64c7ba/mitos-1.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.0
2023-02-23T00:24:01,720   Found link https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.1
2023-02-23T00:24:01,721   Found link https://files.pythonhosted.org/packages/d7/53/5d215fe8689055dd329a27202f9dc7f66e23548f3d2ad3fa55d98dc56988/mitos-2.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.2
2023-02-23T00:24:01,722   Found link https://files.pythonhosted.org/packages/cd/97/a8bf95d5e26b51071d9f342dc475891425b223b6add347a6dbf9412937f1/mitos-2.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.3
2023-02-23T00:24:01,722   Found link https://files.pythonhosted.org/packages/39/9f/6cdac19a8d50915e2e5285b447077459af9c6524f980ded6657dc205593d/mitos-2.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.4
2023-02-23T00:24:01,723   Found link https://files.pythonhosted.org/packages/d0/16/8040a37887377e3992b0874ab441af54e16030fd23eb844bbf5293597c99/mitos-2.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.5
2023-02-23T00:24:01,724   Found link https://files.pythonhosted.org/packages/40/ef/5a93579c1ebc63ca8fe71cfe541bca389a0f9410b9a2c1ceff148f83af79/mitos-2.0.6.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.6
2023-02-23T00:24:01,728   Found link https://files.pythonhosted.org/packages/1f/a2/32eb96227aae3a719794cc922d839b8c38ee5c315087bf095792c48f996d/mitos-2.0.7.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.7
2023-02-23T00:24:01,729   Found link https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.8
2023-02-23T00:24:01,730   Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/9d/93/5f2a1097bfa507acbf7dd6ac677f6df14df61692cccb42d28c34edb7ca5b/mitos-2.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/)
2023-02-23T00:24:01,731   Found link https://files.pythonhosted.org/packages/f8/f4/2950dea175f0bda896b88ac2ac13007a1d007252a583ddd328b176fb54a5/mitos-2.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.0
2023-02-23T00:24:01,731   Found link https://files.pythonhosted.org/packages/57/78/2fde036a6c767aa5fb8c1102526af749ee13ad426b295289265c548384f9/mitos-2.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.1
2023-02-23T00:24:01,732 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitos/
2023-02-23T00:24:01,733 Getting page https://www.piwheels.org/simple/mitos/
2023-02-23T00:24:01,735 Found index url https://www.piwheels.org/simple
2023-02-23T00:24:02,021 Fetched page https://www.piwheels.org/simple/mitos/ as text/html
2023-02-23T00:24:02,035   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.0-py3-none-any.whl#sha256=d4b006045b98620155cbed38de6ecf0d0ffb030cebc4d6e6e947cb015b8ce746 (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,035   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.8-py3-none-any.whl#sha256=5e88aa49c5bba746d511e0e619295e3c59916c71ba94246f984e44dcfef6a06c (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,036   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.7-py3-none-any.whl#sha256=97e98856e946735f44b3df83d67645e0dac8b411edb7774df74c00a44832e1d6 (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,037   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.6-py3-none-any.whl#sha256=8fba2e7cf9c22c6a728a1f8141764a77a6a4a27d7f7e50106b6e43832857b149 (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,037   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.5-py3-none-any.whl#sha256=ed4998969ebae7bf1688b78cdac8f19ca359f123ea79c2acd2654dd454a53f22 (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,038   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.4-py3-none-any.whl#sha256=71ac10ffdc0a236d68e4fd82a700ae35a92f0b23a09242c8b99485ccbadb10cc (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,038   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.3-py3-none-any.whl#sha256=4da7d3530901e0732adc63ab4afa0c5d9a40558469b2ccee71ea4fbad466603b (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,039   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.2-py3-none-any.whl#sha256=0cd775b72e2dca4acf2f9c6f4d591abaeb00b983e4882fcf536d934a8263d342 (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,039   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.1-py3-none-any.whl#sha256=307713427f698c0f3449d782d86287f1494fd2ff773a9fc407fbd29a0de53aed (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,040   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.0-py3-none-any.whl#sha256=424b5172258baf2837d8a45e89224c12fdc3cc2a8f4ba0894e5c74111e754e5d (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,040   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.5-py3-none-any.whl#sha256=f27a041efc520420cbffbb63a6c428a2ace092d6ffdc47942d6b9c434a281629 (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,041   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.4-py3-none-any.whl#sha256=4c35b6595c7a62189502f6becaed4b2fe147f7ed6c6ee8d6b69fb4fda5e2139a (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,041   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.3-py3-none-any.whl#sha256=7b62f2fcef8414d2a429f2f3c033e85c9377805612113e7103fa6793aa083cbc (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,042   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.2-py3-none-any.whl#sha256=ba6a5f7a1d3a0a95106d401e13f7639c5ed2ecb367ab7899e2204b14aa9930a1 (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,042   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.1-py3-none-any.whl#sha256=d216729f10eb3463d947658451c8f70fd97a9b2ca94cea55221f7a50f85749e2 (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,043   Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0-py3-none-any.whl#sha256=4f914c63f700f85163b395353782bcb87e49392f63c151f387dd4514694d0ac1 (from https://www.piwheels.org/simple/mitos/)
2023-02-23T00:24:02,043 Skipping link: not a file: https://www.piwheels.org/simple/mitos/
2023-02-23T00:24:02,044 Skipping link: not a file: https://pypi.org/simple/mitos/
2023-02-23T00:24:02,079 Given no hashes to check 1 links for project 'mitos': discarding no candidates
2023-02-23T00:24:02,107 Collecting mitos==2.1.1
2023-02-23T00:24:02,111   Created temporary directory: /tmp/pip-unpack-dseg71pr
2023-02-23T00:24:02,514   Downloading mitos-2.1.1.tar.gz (290 kB)
2023-02-23T00:24:03,123   Added mitos==2.1.1 from https://files.pythonhosted.org/packages/57/78/2fde036a6c767aa5fb8c1102526af749ee13ad426b295289265c548384f9/mitos-2.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-z39farxu'
2023-02-23T00:24:03,125   Running setup.py (path:/tmp/pip-wheel-y1t5g8od/mitos_af37df1933514b7a976f85f44d4ce758/setup.py) egg_info for package mitos
2023-02-23T00:24:03,127   Created temporary directory: /tmp/pip-pip-egg-info-lt39ypsm
2023-02-23T00:24:03,128   Preparing metadata (setup.py): started
2023-02-23T00:24:03,130   Running command python setup.py egg_info
2023-02-23T00:24:04,939   running egg_info
2023-02-23T00:24:04,941   creating /tmp/pip-pip-egg-info-lt39ypsm/mitos.egg-info
2023-02-23T00:24:05,000   writing /tmp/pip-pip-egg-info-lt39ypsm/mitos.egg-info/PKG-INFO
2023-02-23T00:24:05,004   writing dependency_links to /tmp/pip-pip-egg-info-lt39ypsm/mitos.egg-info/dependency_links.txt
2023-02-23T00:24:05,009   writing requirements to /tmp/pip-pip-egg-info-lt39ypsm/mitos.egg-info/requires.txt
2023-02-23T00:24:05,011   writing top-level names to /tmp/pip-pip-egg-info-lt39ypsm/mitos.egg-info/top_level.txt
2023-02-23T00:24:05,014   writing manifest file '/tmp/pip-pip-egg-info-lt39ypsm/mitos.egg-info/SOURCES.txt'
2023-02-23T00:24:05,269   reading manifest file '/tmp/pip-pip-egg-info-lt39ypsm/mitos.egg-info/SOURCES.txt'
2023-02-23T00:24:05,277   reading manifest template 'MANIFEST.in'
2023-02-23T00:24:05,282   warning: no files found matching 'mitos/codons/gc.prt'
2023-02-23T00:24:05,287   adding license file 'LICENSE'
2023-02-23T00:24:05,298   writing manifest file '/tmp/pip-pip-egg-info-lt39ypsm/mitos.egg-info/SOURCES.txt'
2023-02-23T00:24:05,416   Preparing metadata (setup.py): finished with status 'done'
2023-02-23T00:24:05,431   Source in /tmp/pip-wheel-y1t5g8od/mitos_af37df1933514b7a976f85f44d4ce758 has version 2.1.1, which satisfies requirement mitos==2.1.1 from https://files.pythonhosted.org/packages/57/78/2fde036a6c767aa5fb8c1102526af749ee13ad426b295289265c548384f9/mitos-2.1.1.tar.gz
2023-02-23T00:24:05,433   Removed mitos==2.1.1 from https://files.pythonhosted.org/packages/57/78/2fde036a6c767aa5fb8c1102526af749ee13ad426b295289265c548384f9/mitos-2.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-z39farxu'
2023-02-23T00:24:05,442 Created temporary directory: /tmp/pip-unpack-0jvvlj4c
2023-02-23T00:24:05,444 Building wheels for collected packages: mitos
2023-02-23T00:24:05,492   Created temporary directory: /tmp/pip-wheel-5lbze6xb
2023-02-23T00:24:05,492   Building wheel for mitos (setup.py): started
2023-02-23T00:24:05,494   Destination directory: /tmp/pip-wheel-5lbze6xb
2023-02-23T00:24:05,495   Running command python setup.py bdist_wheel
2023-02-23T00:24:08,204   running bdist_wheel
2023-02-23T00:24:08,436   running build
2023-02-23T00:24:08,437   running build_py
2023-02-23T00:24:08,495   creating build
2023-02-23T00:24:08,496   creating build/lib
2023-02-23T00:24:08,497   creating build/lib/mitos
2023-02-23T00:24:08,500   copying mitos/mitoch_revisions.py -> build/lib/mitos
2023-02-23T00:24:08,508   copying mitos/trnascan_parse_separate.py -> build/lib/mitos
2023-02-23T00:24:08,512   copying mitos/names.py -> build/lib/mitos
2023-02-23T00:24:08,515   copying mitos/mumcmp.py -> build/lib/mitos
2023-02-23T00:24:08,519   copying mitos/mitoloc.py -> build/lib/mitos
2023-02-23T00:24:08,523   copying mitos/create_prot_fasta.py -> build/lib/mitos
2023-02-23T00:24:08,528   copying mitos/trna-cm.py -> build/lib/mitos
2023-02-23T00:24:08,540   copying mitos/get-wancy.py -> build/lib/mitos
2023-02-23T00:24:08,545   copying mitos/__init__.py -> build/lib/mitos
2023-02-23T00:24:08,549   copying mitos/convert_tree.py -> build/lib/mitos
2023-02-23T00:24:08,556   copying mitos/codoncount.py -> build/lib/mitos
2023-02-23T00:24:08,561   copying mitos/skew.py -> build/lib/mitos
2023-02-23T00:24:08,567   copying mitos/removegene.py -> build/lib/mitos
2023-02-23T00:24:08,571   copying mitos/merge_results.py -> build/lib/mitos
2023-02-23T00:24:08,576   copying mitos/prepareFiles.py -> build/lib/mitos
2023-02-23T00:24:08,581   copying mitos/mitoscs.py -> build/lib/mitos
2023-02-23T00:24:08,588   copying mitos/inihit.py -> build/lib/mitos
2023-02-23T00:24:08,593   copying mitos/mitos-extension2.py -> build/lib/mitos
2023-02-23T00:24:08,598   copying mitos/CONFIG.py -> build/lib/mitos
2023-02-23T00:24:08,602   copying mitos/mitos-extension.py -> build/lib/mitos
2023-02-23T00:24:08,610   copying mitos/booreparser.py -> build/lib/mitos
2023-02-23T00:24:08,625   copying mitos/cmsearch_parse_separate.py -> build/lib/mitos
2023-02-23T00:24:08,630   copying mitos/ogre-geneorder.py -> build/lib/mitos
2023-02-23T00:24:08,633   copying mitos/update-mitolog.py -> build/lib/mitos
2023-02-23T00:24:08,640   copying mitos/trnadist.py -> build/lib/mitos
2023-02-23T00:24:08,662   creating build/lib/mitos/gfffile
2023-02-23T00:24:08,664   copying mitos/gfffile/__init__.py -> build/lib/mitos/gfffile
2023-02-23T00:24:08,669   creating build/lib/mitos/mitfi
2023-02-23T00:24:08,671   copying mitos/mitfi/__init__.py -> build/lib/mitos/mitfi
2023-02-23T00:24:08,677   creating build/lib/mitos/protfeat
2023-02-23T00:24:08,679   copying mitos/protfeat/__init__.py -> build/lib/mitos/protfeat
2023-02-23T00:24:08,686   creating build/lib/mitos/mitofile
2023-02-23T00:24:08,688   copying mitos/mitofile/__init__.py -> build/lib/mitos/mitofile
2023-02-23T00:24:08,693   creating build/lib/mitos/sequin
2023-02-23T00:24:08,695   copying mitos/sequin/__init__.py -> build/lib/mitos/sequin
2023-02-23T00:24:08,707   creating build/lib/mitos/blast
2023-02-23T00:24:08,709   copying mitos/blast/__init__.py -> build/lib/mitos/blast
2023-02-23T00:24:08,719   creating build/lib/mitos/tbl
2023-02-23T00:24:08,720   copying mitos/tbl/__init__.py -> build/lib/mitos/tbl
2023-02-23T00:24:08,726   creating build/lib/mitos/webserver
2023-02-23T00:24:08,728   copying mitos/webserver/__init__.py -> build/lib/mitos/webserver
2023-02-23T00:24:08,734   creating build/lib/mitos/feature
2023-02-23T00:24:08,735   copying mitos/feature/__init__.py -> build/lib/mitos/feature
2023-02-23T00:24:08,744   creating build/lib/mitos/mito
2023-02-23T00:24:08,745   copying mitos/mito/__init__.py -> build/lib/mitos/mito
2023-02-23T00:24:08,751   creating build/lib/mitos/trna
2023-02-23T00:24:08,753   copying mitos/trna/arwenscan.py -> build/lib/mitos/trna
2023-02-23T00:24:08,762   copying mitos/trna/trnascan.py -> build/lib/mitos/trna
2023-02-23T00:24:08,767   copying mitos/trna/__init__.py -> build/lib/mitos/trna
2023-02-23T00:24:08,784   creating build/lib/mitos/gb
2023-02-23T00:24:08,785   copying mitos/gb/unify.py -> build/lib/mitos/gb
2023-02-23T00:24:08,790   copying mitos/gb/__init__.py -> build/lib/mitos/gb
2023-02-23T00:24:08,799   creating build/lib/mitos/tax
2023-02-23T00:24:08,800   copying mitos/tax/__init__.py -> build/lib/mitos/tax
2023-02-23T00:24:08,867   creating build/lib/mitos/extprog
2023-02-23T00:24:08,869   copying mitos/extprog/__init__.py -> build/lib/mitos/extprog
2023-02-23T00:24:08,874   creating build/lib/mitos/rna
2023-02-23T00:24:08,876   copying mitos/rna/forester.py -> build/lib/mitos/rna
2023-02-23T00:24:08,881   copying mitos/rna/__init__.py -> build/lib/mitos/rna
2023-02-23T00:24:08,884   copying mitos/rna/vienna.py -> build/lib/mitos/rna
2023-02-23T00:24:08,890   creating build/lib/mitos/mergefeature
2023-02-23T00:24:08,892   copying mitos/mergefeature/__init__.py -> build/lib/mitos/mergefeature
2023-02-23T00:24:08,899   creating build/lib/mitos/update
2023-02-23T00:24:08,901   copying mitos/update/__init__.py -> build/lib/mitos/update
2023-02-23T00:24:08,908   creating build/lib/mitos/draw
2023-02-23T00:24:08,910   copying mitos/draw/__init__.py -> build/lib/mitos/draw
2023-02-23T00:24:08,916   creating build/lib/mitos/sequence
2023-02-23T00:24:08,918   copying mitos/sequence/degenerate.py -> build/lib/mitos/sequence
2023-02-23T00:24:08,921   copying mitos/sequence/__init__.py -> build/lib/mitos/sequence
2023-02-23T00:24:08,928   creating build/lib/mitos/bedfile
2023-02-23T00:24:08,929   copying mitos/bedfile/__init__.py -> build/lib/mitos/bedfile
2023-02-23T00:24:08,933   running egg_info
2023-02-23T00:24:09,170   writing mitos.egg-info/PKG-INFO
2023-02-23T00:24:09,174   writing dependency_links to mitos.egg-info/dependency_links.txt
2023-02-23T00:24:09,178   writing requirements to mitos.egg-info/requires.txt
2023-02-23T00:24:09,185   writing top-level names to mitos.egg-info/top_level.txt
2023-02-23T00:24:09,268   reading manifest file 'mitos.egg-info/SOURCES.txt'
2023-02-23T00:24:09,280   reading manifest template 'MANIFEST.in'
2023-02-23T00:24:09,281   warning: no files found matching 'mitos/codons/gc.prt'
2023-02-23T00:24:09,285   adding license file 'LICENSE'
2023-02-23T00:24:09,299   writing manifest file 'mitos.egg-info/SOURCES.txt'
2023-02-23T00:24:09,307   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'mitos.mitfi.parser' as data is deprecated, please list it in `packages`.
2023-02-23T00:24:09,307       !!


2023-02-23T00:24:09,308       ############################
2023-02-23T00:24:09,308       # Package would be ignored #
2023-02-23T00:24:09,309       ############################
2023-02-23T00:24:09,309       Python recognizes 'mitos.mitfi.parser' as an importable package,
2023-02-23T00:24:09,309       but it is not listed in the `packages` configuration of setuptools.

2023-02-23T00:24:09,310       'mitos.mitfi.parser' has been automatically added to the distribution only
2023-02-23T00:24:09,310       because it may contain data files, but this behavior is likely to change
2023-02-23T00:24:09,310       in future versions of setuptools (and therefore is considered deprecated).

2023-02-23T00:24:09,311       Please make sure that 'mitos.mitfi.parser' is included as a package by using
2023-02-23T00:24:09,311       the `packages` configuration field or the proper discovery methods
2023-02-23T00:24:09,312       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-23T00:24:09,312       instead of `find_packages(...)`/`find:`).

2023-02-23T00:24:09,312       You can read more about "package discovery" and "data files" on setuptools
2023-02-23T00:24:09,313       documentation page.


2023-02-23T00:24:09,314   !!

2023-02-23T00:24:09,314     check.warn(importable)
2023-02-23T00:24:09,319   copying mitos/plotprot.R -> build/lib/mitos
2023-02-23T00:24:09,323   copying mitos/plotrna.R -> build/lib/mitos
2023-02-23T00:24:09,353   copying mitos/plotstst.R -> build/lib/mitos
2023-02-23T00:24:09,359   creating build/lib/mitos/mitfi/parser
2023-02-23T00:24:09,360   copying mitos/mitfi/parser/improve_infernal_structure.jar -> build/lib/mitos/mitfi/parser
2023-02-23T00:24:09,387   copying mitos/mitfi/parser/mitfiGeneticCodes -> build/lib/mitos/mitfi/parser
2023-02-23T00:24:09,392   copying mitos/mitfi/parser/mitfi_import-1.1.jar -> build/lib/mitos/mitfi/parser
2023-02-23T00:24:09,398   copying mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/lib/mitos/mitfi/parser
2023-02-23T00:24:09,405   copying mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/lib/mitos/mitfi/parser
2023-02-23T00:24:09,412   copying mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/lib/mitos/mitfi/parser
2023-02-23T00:24:09,418   copying mitos/mitfi/parser/mitfi_import.jar -> build/lib/mitos/mitfi/parser
2023-02-23T00:24:09,424   copying mitos/webserver/help.txt -> build/lib/mitos/webserver
2023-02-23T00:24:09,431   copying mitos/webserver/history.txt -> build/lib/mitos/webserver
2023-02-23T00:24:09,446   copying mitos/webserver/index.txt -> build/lib/mitos/webserver
2023-02-23T00:24:09,451   copying mitos/webserver/news.txt -> build/lib/mitos/webserver
2023-02-23T00:24:09,462   copying mitos/webserver/upload.txt -> build/lib/mitos/webserver
2023-02-23T00:24:09,551   copying mitos/webserver/wait.txt -> build/lib/mitos/webserver
2023-02-23T00:24:09,577   running build_scripts
2023-02-23T00:24:09,578   creating build/scripts-3.7
2023-02-23T00:24:09,600   copying and adjusting runmitos.py -> build/scripts-3.7
2023-02-23T00:24:09,610   copying and adjusting drawmitos.py -> build/scripts-3.7
2023-02-23T00:24:09,613   copying and adjusting analyse.py -> build/scripts-3.7
2023-02-23T00:24:09,618   copying and adjusting gcpp.py -> build/scripts-3.7
2023-02-23T00:24:09,622   copying and adjusting geneorder.py -> build/scripts-3.7
2023-02-23T00:24:09,628   copying and adjusting getfeatures.py -> build/scripts-3.7
2023-02-23T00:24:09,632   copying and adjusting getinfo.py -> build/scripts-3.7
2023-02-23T00:24:09,635   copying and adjusting refseqsplit.py -> build/scripts-3.7
2023-02-23T00:24:09,638   copying and adjusting subseq.py -> build/scripts-3.7
2023-02-23T00:24:09,650   copying and adjusting taxtree.py -> build/scripts-3.7
2023-02-23T00:24:09,654   copying update-blastdb.py -> build/scripts-3.7
2023-02-23T00:24:09,658   copying mitos/plotprot.R -> build/scripts-3.7
2023-02-23T00:24:09,662   copying mitos/plotstst.R -> build/scripts-3.7
2023-02-23T00:24:09,667   copying mitos/plotrna.R -> build/scripts-3.7
2023-02-23T00:24:09,670   changing mode of build/scripts-3.7/runmitos.py from 644 to 755
2023-02-23T00:24:09,670   changing mode of build/scripts-3.7/drawmitos.py from 644 to 755
2023-02-23T00:24:09,671   changing mode of build/scripts-3.7/analyse.py from 644 to 755
2023-02-23T00:24:09,672   changing mode of build/scripts-3.7/gcpp.py from 644 to 755
2023-02-23T00:24:09,672   changing mode of build/scripts-3.7/geneorder.py from 644 to 755
2023-02-23T00:24:09,673   changing mode of build/scripts-3.7/getfeatures.py from 644 to 755
2023-02-23T00:24:09,674   changing mode of build/scripts-3.7/getinfo.py from 644 to 755
2023-02-23T00:24:09,674   changing mode of build/scripts-3.7/refseqsplit.py from 644 to 755
2023-02-23T00:24:09,675   changing mode of build/scripts-3.7/subseq.py from 644 to 755
2023-02-23T00:24:09,676   changing mode of build/scripts-3.7/taxtree.py from 644 to 755
2023-02-23T00:24:09,677   changing mode of build/scripts-3.7/update-blastdb.py from 644 to 755
2023-02-23T00:24:09,802   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2023-02-23T00:24:09,803     setuptools.SetuptoolsDeprecationWarning,
2023-02-23T00:24:09,864   installing to build/bdist.linux-armv7l/wheel
2023-02-23T00:24:09,865   running install
2023-02-23T00:24:09,923   running install_lib
2023-02-23T00:24:10,041   creating build/bdist.linux-armv7l
2023-02-23T00:24:10,042   creating build/bdist.linux-armv7l/wheel
2023-02-23T00:24:10,046   creating build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,049   creating build/bdist.linux-armv7l/wheel/mitos/gfffile
2023-02-23T00:24:10,051   copying build/lib/mitos/gfffile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gfffile
2023-02-23T00:24:10,074   creating build/bdist.linux-armv7l/wheel/mitos/mitfi
2023-02-23T00:24:10,077   creating build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2023-02-23T00:24:10,165   copying build/lib/mitos/mitfi/parser/improve_infernal_structure.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2023-02-23T00:24:10,170   copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2023-02-23T00:24:10,177   copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2023-02-23T00:24:10,183   copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2023-02-23T00:24:10,194   copying build/lib/mitos/mitfi/parser/mitfi_import.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2023-02-23T00:24:10,200   copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2023-02-23T00:24:10,207   copying build/lib/mitos/mitfi/parser/mitfiGeneticCodes -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2023-02-23T00:24:10,212   copying build/lib/mitos/mitfi/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitfi
2023-02-23T00:24:10,217   copying build/lib/mitos/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,221   copying build/lib/mitos/mitoch_revisions.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,230   creating build/bdist.linux-armv7l/wheel/mitos/protfeat
2023-02-23T00:24:10,232   copying build/lib/mitos/protfeat/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/protfeat
2023-02-23T00:24:10,238   copying build/lib/mitos/trnascan_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,244   creating build/bdist.linux-armv7l/wheel/mitos/mitofile
2023-02-23T00:24:10,245   copying build/lib/mitos/mitofile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitofile
2023-02-23T00:24:10,251   creating build/bdist.linux-armv7l/wheel/mitos/sequin
2023-02-23T00:24:10,252   copying build/lib/mitos/sequin/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequin
2023-02-23T00:24:10,257   creating build/bdist.linux-armv7l/wheel/mitos/blast
2023-02-23T00:24:10,259   copying build/lib/mitos/blast/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/blast
2023-02-23T00:24:10,269   copying build/lib/mitos/names.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,281   creating build/bdist.linux-armv7l/wheel/mitos/tbl
2023-02-23T00:24:10,283   copying build/lib/mitos/tbl/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tbl
2023-02-23T00:24:10,288   copying build/lib/mitos/mumcmp.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,293   creating build/bdist.linux-armv7l/wheel/mitos/webserver
2023-02-23T00:24:10,294   copying build/lib/mitos/webserver/history.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2023-02-23T00:24:10,298   copying build/lib/mitos/webserver/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/webserver
2023-02-23T00:24:10,303   copying build/lib/mitos/webserver/index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2023-02-23T00:24:10,308   copying build/lib/mitos/webserver/upload.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2023-02-23T00:24:10,311   copying build/lib/mitos/webserver/wait.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2023-02-23T00:24:10,315   copying build/lib/mitos/webserver/help.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2023-02-23T00:24:10,320   copying build/lib/mitos/webserver/news.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2023-02-23T00:24:10,332   copying build/lib/mitos/mitoloc.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,337   copying build/lib/mitos/create_prot_fasta.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,341   copying build/lib/mitos/trna-cm.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,355   copying build/lib/mitos/get-wancy.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,359   copying build/lib/mitos/__init__.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,374   creating build/bdist.linux-armv7l/wheel/mitos/feature
2023-02-23T00:24:10,376   copying build/lib/mitos/feature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/feature
2023-02-23T00:24:10,383   copying build/lib/mitos/convert_tree.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,389   copying build/lib/mitos/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,393   creating build/bdist.linux-armv7l/wheel/mitos/mito
2023-02-23T00:24:10,395   copying build/lib/mitos/mito/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mito
2023-02-23T00:24:10,401   creating build/bdist.linux-armv7l/wheel/mitos/trna
2023-02-23T00:24:10,402   copying build/lib/mitos/trna/arwenscan.py -> build/bdist.linux-armv7l/wheel/mitos/trna
2023-02-23T00:24:10,407   copying build/lib/mitos/trna/trnascan.py -> build/bdist.linux-armv7l/wheel/mitos/trna
2023-02-23T00:24:10,412   copying build/lib/mitos/trna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/trna
2023-02-23T00:24:10,416   copying build/lib/mitos/codoncount.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,505   copying build/lib/mitos/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,510   copying build/lib/mitos/skew.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,516   creating build/bdist.linux-armv7l/wheel/mitos/gb
2023-02-23T00:24:10,518   copying build/lib/mitos/gb/unify.py -> build/bdist.linux-armv7l/wheel/mitos/gb
2023-02-23T00:24:10,524   copying build/lib/mitos/gb/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gb
2023-02-23T00:24:10,532   creating build/bdist.linux-armv7l/wheel/mitos/tax
2023-02-23T00:24:10,533   copying build/lib/mitos/tax/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tax
2023-02-23T00:24:10,539   creating build/bdist.linux-armv7l/wheel/mitos/extprog
2023-02-23T00:24:10,540   copying build/lib/mitos/extprog/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/extprog
2023-02-23T00:24:10,545   copying build/lib/mitos/removegene.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,548   copying build/lib/mitos/merge_results.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,553   copying build/lib/mitos/prepareFiles.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,556   copying build/lib/mitos/mitoscs.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,562   copying build/lib/mitos/inihit.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,568   copying build/lib/mitos/mitos-extension2.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,573   copying build/lib/mitos/CONFIG.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,577   copying build/lib/mitos/mitos-extension.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,582   copying build/lib/mitos/booreparser.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,587   creating build/bdist.linux-armv7l/wheel/mitos/rna
2023-02-23T00:24:10,589   copying build/lib/mitos/rna/forester.py -> build/bdist.linux-armv7l/wheel/mitos/rna
2023-02-23T00:24:10,593   copying build/lib/mitos/rna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/rna
2023-02-23T00:24:10,596   copying build/lib/mitos/rna/vienna.py -> build/bdist.linux-armv7l/wheel/mitos/rna
2023-02-23T00:24:10,603   copying build/lib/mitos/cmsearch_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,607   copying build/lib/mitos/ogre-geneorder.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,612   creating build/bdist.linux-armv7l/wheel/mitos/mergefeature
2023-02-23T00:24:10,613   copying build/lib/mitos/mergefeature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mergefeature
2023-02-23T00:24:10,619   copying build/lib/mitos/update-mitolog.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,623   copying build/lib/mitos/trnadist.py -> build/bdist.linux-armv7l/wheel/mitos
2023-02-23T00:24:10,660   creating build/bdist.linux-armv7l/wheel/mitos/update
2023-02-23T00:24:10,662   copying build/lib/mitos/update/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/update
2023-02-23T00:24:10,669   creating build/bdist.linux-armv7l/wheel/mitos/draw
2023-02-23T00:24:10,671   copying build/lib/mitos/draw/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/draw
2023-02-23T00:24:10,677   creating build/bdist.linux-armv7l/wheel/mitos/sequence
2023-02-23T00:24:10,679   copying build/lib/mitos/sequence/degenerate.py -> build/bdist.linux-armv7l/wheel/mitos/sequence
2023-02-23T00:24:10,683   copying build/lib/mitos/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequence
2023-02-23T00:24:10,690   creating build/bdist.linux-armv7l/wheel/mitos/bedfile
2023-02-23T00:24:10,692   copying build/lib/mitos/bedfile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/bedfile
2023-02-23T00:24:10,696   running install_egg_info
2023-02-23T00:24:10,763   Copying mitos.egg-info to build/bdist.linux-armv7l/wheel/mitos-2.1.1-py3.7.egg-info
2023-02-23T00:24:10,786   running install_scripts
2023-02-23T00:24:10,790   creating build/bdist.linux-armv7l/wheel/mitos-2.1.1.data
2023-02-23T00:24:10,791   creating build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts
2023-02-23T00:24:10,794   copying build/scripts-3.7/subseq.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts
2023-02-23T00:24:10,807   copying build/scripts-3.7/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts
2023-02-23T00:24:10,811   copying build/scripts-3.7/analyse.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts
2023-02-23T00:24:10,816   copying build/scripts-3.7/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts
2023-02-23T00:24:10,820   copying build/scripts-3.7/getfeatures.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts
2023-02-23T00:24:10,825   copying build/scripts-3.7/geneorder.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts
2023-02-23T00:24:10,830   copying build/scripts-3.7/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts
2023-02-23T00:24:10,835   copying build/scripts-3.7/update-blastdb.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts
2023-02-23T00:24:10,839   copying build/scripts-3.7/getinfo.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts
2023-02-23T00:24:10,849   copying build/scripts-3.7/drawmitos.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts
2023-02-23T00:24:10,853   copying build/scripts-3.7/refseqsplit.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts
2023-02-23T00:24:10,857   copying build/scripts-3.7/taxtree.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts
2023-02-23T00:24:10,861   copying build/scripts-3.7/gcpp.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts
2023-02-23T00:24:10,866   copying build/scripts-3.7/runmitos.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts
2023-02-23T00:24:10,872   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts/subseq.py to 755
2023-02-23T00:24:10,874   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts/plotprot.R to 755
2023-02-23T00:24:10,875   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts/analyse.py to 755
2023-02-23T00:24:10,876   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts/plotrna.R to 755
2023-02-23T00:24:10,878   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts/getfeatures.py to 755
2023-02-23T00:24:10,879   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts/geneorder.py to 755
2023-02-23T00:24:10,880   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts/plotstst.R to 755
2023-02-23T00:24:10,884   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts/update-blastdb.py to 755
2023-02-23T00:24:10,886   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts/getinfo.py to 755
2023-02-23T00:24:10,887   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts/drawmitos.py to 755
2023-02-23T00:24:10,888   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts/refseqsplit.py to 755
2023-02-23T00:24:10,889   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts/taxtree.py to 755
2023-02-23T00:24:10,891   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts/gcpp.py to 755
2023-02-23T00:24:10,899   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.1.data/scripts/runmitos.py to 755
2023-02-23T00:24:10,943   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2023-02-23T00:24:10,952   creating build/bdist.linux-armv7l/wheel/mitos-2.1.1.dist-info/WHEEL
2023-02-23T00:24:10,958   creating '/tmp/pip-wheel-5lbze6xb/mitos-2.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-02-23T00:24:10,965   adding 'mitos/CONFIG.py'
2023-02-23T00:24:10,969   adding 'mitos/__init__.py'
2023-02-23T00:24:10,972   adding 'mitos/booreparser.py'
2023-02-23T00:24:10,975   adding 'mitos/cmsearch_parse_separate.py'
2023-02-23T00:24:10,978   adding 'mitos/codoncount.py'
2023-02-23T00:24:10,990   adding 'mitos/convert_tree.py'
2023-02-23T00:24:11,048   adding 'mitos/create_prot_fasta.py'
2023-02-23T00:24:11,051   adding 'mitos/get-wancy.py'
2023-02-23T00:24:11,055   adding 'mitos/inihit.py'
2023-02-23T00:24:11,058   adding 'mitos/merge_results.py'
2023-02-23T00:24:11,071   adding 'mitos/mitoch_revisions.py'
2023-02-23T00:24:11,075   adding 'mitos/mitoloc.py'
2023-02-23T00:24:11,080   adding 'mitos/mitos-extension.py'
2023-02-23T00:24:11,086   adding 'mitos/mitos-extension2.py'
2023-02-23T00:24:11,098   adding 'mitos/mitoscs.py'
2023-02-23T00:24:11,102   adding 'mitos/mumcmp.py'
2023-02-23T00:24:11,104   adding 'mitos/names.py'
2023-02-23T00:24:11,107   adding 'mitos/ogre-geneorder.py'
2023-02-23T00:24:11,110   adding 'mitos/plotprot.R'
2023-02-23T00:24:11,113   adding 'mitos/plotrna.R'
2023-02-23T00:24:11,116   adding 'mitos/plotstst.R'
2023-02-23T00:24:11,119   adding 'mitos/prepareFiles.py'
2023-02-23T00:24:11,122   adding 'mitos/removegene.py'
2023-02-23T00:24:11,127   adding 'mitos/skew.py'
2023-02-23T00:24:11,166   adding 'mitos/trna-cm.py'
2023-02-23T00:24:11,177   adding 'mitos/trnadist.py'
2023-02-23T00:24:11,180   adding 'mitos/trnascan_parse_separate.py'
2023-02-23T00:24:11,184   adding 'mitos/update-mitolog.py'
2023-02-23T00:24:11,188   adding 'mitos/bedfile/__init__.py'
2023-02-23T00:24:11,215   adding 'mitos/blast/__init__.py'
2023-02-23T00:24:11,242   adding 'mitos/draw/__init__.py'
2023-02-23T00:24:11,246   adding 'mitos/extprog/__init__.py'
2023-02-23T00:24:11,259   adding 'mitos/feature/__init__.py'
2023-02-23T00:24:11,274   adding 'mitos/gb/__init__.py'
2023-02-23T00:24:11,280   adding 'mitos/gb/unify.py'
2023-02-23T00:24:11,283   adding 'mitos/gfffile/__init__.py'
2023-02-23T00:24:11,292   adding 'mitos/mergefeature/__init__.py'
2023-02-23T00:24:11,300   adding 'mitos/mitfi/__init__.py'
2023-02-23T00:24:11,305   adding 'mitos/mitfi/parser/improve_infernal_structure.jar'
2023-02-23T00:24:11,309   adding 'mitos/mitfi/parser/mitfiGeneticCodes'
2023-02-23T00:24:11,318   adding 'mitos/mitfi/parser/mitfi_import-1.1.jar'
2023-02-23T00:24:11,328   adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.old'
2023-02-23T00:24:11,337   adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.org'
2023-02-23T00:24:11,347   adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ'
2023-02-23T00:24:11,357   adding 'mitos/mitfi/parser/mitfi_import.jar'
2023-02-23T00:24:11,361   adding 'mitos/mito/__init__.py'
2023-02-23T00:24:11,366   adding 'mitos/mitofile/__init__.py'
2023-02-23T00:24:11,375   adding 'mitos/protfeat/__init__.py'
2023-02-23T00:24:11,379   adding 'mitos/rna/__init__.py'
2023-02-23T00:24:11,382   adding 'mitos/rna/forester.py'
2023-02-23T00:24:11,388   adding 'mitos/rna/vienna.py'
2023-02-23T00:24:11,395   adding 'mitos/sequence/__init__.py'
2023-02-23T00:24:11,398   adding 'mitos/sequence/degenerate.py'
2023-02-23T00:24:11,402   adding 'mitos/sequin/__init__.py'
2023-02-23T00:24:11,406   adding 'mitos/tax/__init__.py'
2023-02-23T00:24:11,410   adding 'mitos/tbl/__init__.py'
2023-02-23T00:24:11,414   adding 'mitos/trna/__init__.py'
2023-02-23T00:24:11,418   adding 'mitos/trna/arwenscan.py'
2023-02-23T00:24:11,423   adding 'mitos/trna/trnascan.py'
2023-02-23T00:24:11,432   adding 'mitos/update/__init__.py'
2023-02-23T00:24:11,456   adding 'mitos/webserver/__init__.py'
2023-02-23T00:24:11,465   adding 'mitos/webserver/help.txt'
2023-02-23T00:24:11,469   adding 'mitos/webserver/history.txt'
2023-02-23T00:24:11,472   adding 'mitos/webserver/index.txt'
2023-02-23T00:24:11,479   adding 'mitos/webserver/news.txt'
2023-02-23T00:24:11,482   adding 'mitos/webserver/upload.txt'
2023-02-23T00:24:11,485   adding 'mitos/webserver/wait.txt'
2023-02-23T00:24:11,491   adding 'mitos-2.1.1.data/scripts/analyse.py'
2023-02-23T00:24:11,494   adding 'mitos-2.1.1.data/scripts/drawmitos.py'
2023-02-23T00:24:11,498   adding 'mitos-2.1.1.data/scripts/gcpp.py'
2023-02-23T00:24:11,503   adding 'mitos-2.1.1.data/scripts/geneorder.py'
2023-02-23T00:24:11,569   adding 'mitos-2.1.1.data/scripts/getfeatures.py'
2023-02-23T00:24:11,572   adding 'mitos-2.1.1.data/scripts/getinfo.py'
2023-02-23T00:24:11,575   adding 'mitos-2.1.1.data/scripts/plotprot.R'
2023-02-23T00:24:11,577   adding 'mitos-2.1.1.data/scripts/plotrna.R'
2023-02-23T00:24:11,580   adding 'mitos-2.1.1.data/scripts/plotstst.R'
2023-02-23T00:24:11,583   adding 'mitos-2.1.1.data/scripts/refseqsplit.py'
2023-02-23T00:24:11,596   adding 'mitos-2.1.1.data/scripts/runmitos.py'
2023-02-23T00:24:11,601   adding 'mitos-2.1.1.data/scripts/subseq.py'
2023-02-23T00:24:11,605   adding 'mitos-2.1.1.data/scripts/taxtree.py'
2023-02-23T00:24:11,608   adding 'mitos-2.1.1.data/scripts/update-blastdb.py'
2023-02-23T00:24:11,630   adding 'mitos-2.1.1.dist-info/LICENSE'
2023-02-23T00:24:11,633   adding 'mitos-2.1.1.dist-info/METADATA'
2023-02-23T00:24:11,634   adding 'mitos-2.1.1.dist-info/WHEEL'
2023-02-23T00:24:11,636   adding 'mitos-2.1.1.dist-info/top_level.txt'
2023-02-23T00:24:11,639   adding 'mitos-2.1.1.dist-info/RECORD'
2023-02-23T00:24:11,659   removing build/bdist.linux-armv7l/wheel
2023-02-23T00:24:11,901   Building wheel for mitos (setup.py): finished with status 'done'
2023-02-23T00:24:11,918   Created wheel for mitos: filename=mitos-2.1.1-py3-none-any.whl size=349980 sha256=698670abccda0918af0b490888cb195f86172e217766c9672bfedae33666ac82
2023-02-23T00:24:11,920   Stored in directory: /tmp/pip-ephem-wheel-cache-4q822mqd/wheels/37/25/04/f452023d5cadbda43c5812d5d5bddc62506559cc1a48026c09
2023-02-23T00:24:11,952 Successfully built mitos
2023-02-23T00:24:11,991 Removed build tracker: '/tmp/pip-build-tracker-z39farxu'