2023-02-23T12:57:05,231 Created temporary directory: /tmp/pip-ephem-wheel-cache-r4gjirkz 2023-02-23T12:57:05,237 Created temporary directory: /tmp/pip-build-tracker-yty0eb2x 2023-02-23T12:57:05,237 Initialized build tracking at /tmp/pip-build-tracker-yty0eb2x 2023-02-23T12:57:05,238 Created build tracker: /tmp/pip-build-tracker-yty0eb2x 2023-02-23T12:57:05,238 Entered build tracker: /tmp/pip-build-tracker-yty0eb2x 2023-02-23T12:57:05,239 Created temporary directory: /tmp/pip-wheel-e6lrp1tc 2023-02-23T12:57:05,250 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-23T12:57:05,255 Created temporary directory: /tmp/pip-ephem-wheel-cache-ykq9fu1t 2023-02-23T12:57:05,309 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-23T12:57:05,315 2 location(s) to search for versions of mitos: 2023-02-23T12:57:05,315 * https://pypi.org/simple/mitos/ 2023-02-23T12:57:05,315 * https://www.piwheels.org/simple/mitos/ 2023-02-23T12:57:05,317 Fetching project page and analyzing links: https://pypi.org/simple/mitos/ 2023-02-23T12:57:05,318 Getting page https://pypi.org/simple/mitos/ 2023-02-23T12:57:05,322 Found index url https://pypi.org/simple 2023-02-23T12:57:05,553 Fetched page https://pypi.org/simple/mitos/ as application/vnd.pypi.simple.v1+json 2023-02-23T12:57:05,565 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/ae/2d/5f1e66a046e59cf6088f44d4a02cae66d498e226365af5fd42e2d660a814/mitos-1.0-py2-none-any.whl (from https://pypi.org/simple/mitos/) 2023-02-23T12:57:05,566 Found link https://files.pythonhosted.org/packages/c5/6e/e1aae4079b0ebbce64897f54f5cd4a3953a0cb741026d16e14e7ae272a48/mitos-1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0 2023-02-23T12:57:05,567 Found link https://files.pythonhosted.org/packages/d7/19/816780e09ecc6a783f146d80bcde73eb7940d074f4feea137ec954bfd437/mitos-1.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.1 2023-02-23T12:57:05,567 Found link https://files.pythonhosted.org/packages/38/c7/3dd90bcf0d61c69226ef1632baa3ad0e96d798de36053b4b56ed7660dfdb/mitos-1.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.2 2023-02-23T12:57:05,568 Found link https://files.pythonhosted.org/packages/e2/d4/864af2605cc1f45cc78cfed740bbdfba1da59ea9a42c24ef5077c9218501/mitos-1.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.3 2023-02-23T12:57:05,569 Found link https://files.pythonhosted.org/packages/8d/32/1aa5eb88f964c3cf5441622648cc4ae30f115db32bdd5dc5bf194a3c112c/mitos-1.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.4 2023-02-23T12:57:05,569 Found link https://files.pythonhosted.org/packages/ff/49/f4c711126604aa86abeeda44378786a0903bc53970acf4afa5feb68f72b8/mitos-1.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.5 2023-02-23T12:57:05,570 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/c3/cd/96e0e1ad1551b8fff56ab89e61231809494dec3ee80f51117b4f5d432452/mitos-1.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2023-02-23T12:57:05,571 Found link https://files.pythonhosted.org/packages/ce/33/46fd40fd9f4c11f5bf296c2c092f59e36dee233d71a0f032b34c2a64c7ba/mitos-1.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.0 2023-02-23T12:57:05,571 Found link https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.1 2023-02-23T12:57:05,572 Found link https://files.pythonhosted.org/packages/d7/53/5d215fe8689055dd329a27202f9dc7f66e23548f3d2ad3fa55d98dc56988/mitos-2.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.2 2023-02-23T12:57:05,573 Found link https://files.pythonhosted.org/packages/cd/97/a8bf95d5e26b51071d9f342dc475891425b223b6add347a6dbf9412937f1/mitos-2.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.3 2023-02-23T12:57:05,573 Found link https://files.pythonhosted.org/packages/39/9f/6cdac19a8d50915e2e5285b447077459af9c6524f980ded6657dc205593d/mitos-2.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.4 2023-02-23T12:57:05,574 Found link https://files.pythonhosted.org/packages/d0/16/8040a37887377e3992b0874ab441af54e16030fd23eb844bbf5293597c99/mitos-2.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.5 2023-02-23T12:57:05,575 Found link https://files.pythonhosted.org/packages/40/ef/5a93579c1ebc63ca8fe71cfe541bca389a0f9410b9a2c1ceff148f83af79/mitos-2.0.6.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.6 2023-02-23T12:57:05,575 Found link https://files.pythonhosted.org/packages/1f/a2/32eb96227aae3a719794cc922d839b8c38ee5c315087bf095792c48f996d/mitos-2.0.7.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.7 2023-02-23T12:57:05,576 Found link https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.8 2023-02-23T12:57:05,577 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/9d/93/5f2a1097bfa507acbf7dd6ac677f6df14df61692cccb42d28c34edb7ca5b/mitos-2.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2023-02-23T12:57:05,577 Found link https://files.pythonhosted.org/packages/f8/f4/2950dea175f0bda896b88ac2ac13007a1d007252a583ddd328b176fb54a5/mitos-2.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.0 2023-02-23T12:57:05,578 Found link https://files.pythonhosted.org/packages/57/78/2fde036a6c767aa5fb8c1102526af749ee13ad426b295289265c548384f9/mitos-2.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.1 2023-02-23T12:57:05,583 Found link https://files.pythonhosted.org/packages/74/63/f90f359df86c01e68f5c678eef30d929b9311e7bb80f16071a1532515a0a/mitos-2.1.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.2 2023-02-23T12:57:05,584 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitos/ 2023-02-23T12:57:05,585 Getting page https://www.piwheels.org/simple/mitos/ 2023-02-23T12:57:05,587 Found index url https://www.piwheels.org/simple 2023-02-23T12:57:05,820 Fetched page https://www.piwheels.org/simple/mitos/ as text/html 2023-02-23T12:57:05,835 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.1-py3-none-any.whl#sha256=698670abccda0918af0b490888cb195f86172e217766c9672bfedae33666ac82 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,835 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.0-py3-none-any.whl#sha256=d4b006045b98620155cbed38de6ecf0d0ffb030cebc4d6e6e947cb015b8ce746 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,836 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.8-py3-none-any.whl#sha256=5e88aa49c5bba746d511e0e619295e3c59916c71ba94246f984e44dcfef6a06c (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,836 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.7-py3-none-any.whl#sha256=97e98856e946735f44b3df83d67645e0dac8b411edb7774df74c00a44832e1d6 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,837 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.6-py3-none-any.whl#sha256=8fba2e7cf9c22c6a728a1f8141764a77a6a4a27d7f7e50106b6e43832857b149 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,837 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.5-py3-none-any.whl#sha256=ed4998969ebae7bf1688b78cdac8f19ca359f123ea79c2acd2654dd454a53f22 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,838 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.4-py3-none-any.whl#sha256=71ac10ffdc0a236d68e4fd82a700ae35a92f0b23a09242c8b99485ccbadb10cc (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,839 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.3-py3-none-any.whl#sha256=4da7d3530901e0732adc63ab4afa0c5d9a40558469b2ccee71ea4fbad466603b (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,839 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.2-py3-none-any.whl#sha256=0cd775b72e2dca4acf2f9c6f4d591abaeb00b983e4882fcf536d934a8263d342 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,840 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.1-py3-none-any.whl#sha256=307713427f698c0f3449d782d86287f1494fd2ff773a9fc407fbd29a0de53aed (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,840 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.0-py3-none-any.whl#sha256=424b5172258baf2837d8a45e89224c12fdc3cc2a8f4ba0894e5c74111e754e5d (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,841 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.5-py3-none-any.whl#sha256=f27a041efc520420cbffbb63a6c428a2ace092d6ffdc47942d6b9c434a281629 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,841 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.4-py3-none-any.whl#sha256=4c35b6595c7a62189502f6becaed4b2fe147f7ed6c6ee8d6b69fb4fda5e2139a (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,842 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.3-py3-none-any.whl#sha256=7b62f2fcef8414d2a429f2f3c033e85c9377805612113e7103fa6793aa083cbc (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,842 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.2-py3-none-any.whl#sha256=ba6a5f7a1d3a0a95106d401e13f7639c5ed2ecb367ab7899e2204b14aa9930a1 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,843 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.1-py3-none-any.whl#sha256=d216729f10eb3463d947658451c8f70fd97a9b2ca94cea55221f7a50f85749e2 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,843 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0-py3-none-any.whl#sha256=4f914c63f700f85163b395353782bcb87e49392f63c151f387dd4514694d0ac1 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T12:57:05,844 Skipping link: not a file: https://www.piwheels.org/simple/mitos/ 2023-02-23T12:57:05,844 Skipping link: not a file: https://pypi.org/simple/mitos/ 2023-02-23T12:57:05,881 Given no hashes to check 1 links for project 'mitos': discarding no candidates 2023-02-23T12:57:05,908 Collecting mitos==2.1.2 2023-02-23T12:57:05,912 Created temporary directory: /tmp/pip-unpack-t5wiivne 2023-02-23T12:57:06,160 Downloading mitos-2.1.2.tar.gz (290 kB) 2023-02-23T12:57:06,721 Added mitos==2.1.2 from https://files.pythonhosted.org/packages/74/63/f90f359df86c01e68f5c678eef30d929b9311e7bb80f16071a1532515a0a/mitos-2.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-yty0eb2x' 2023-02-23T12:57:06,723 Running setup.py (path:/tmp/pip-wheel-e6lrp1tc/mitos_5909bd87e1c74c4fbb1f5db5f927db30/setup.py) egg_info for package mitos 2023-02-23T12:57:06,724 Created temporary directory: /tmp/pip-pip-egg-info-qvvc2io8 2023-02-23T12:57:06,725 Preparing metadata (setup.py): started 2023-02-23T12:57:06,727 Running command python setup.py egg_info 2023-02-23T12:57:08,198 running egg_info 2023-02-23T12:57:08,201 creating /tmp/pip-pip-egg-info-qvvc2io8/mitos.egg-info 2023-02-23T12:57:08,253 writing /tmp/pip-pip-egg-info-qvvc2io8/mitos.egg-info/PKG-INFO 2023-02-23T12:57:08,257 writing dependency_links to /tmp/pip-pip-egg-info-qvvc2io8/mitos.egg-info/dependency_links.txt 2023-02-23T12:57:08,262 writing requirements to /tmp/pip-pip-egg-info-qvvc2io8/mitos.egg-info/requires.txt 2023-02-23T12:57:08,265 writing top-level names to /tmp/pip-pip-egg-info-qvvc2io8/mitos.egg-info/top_level.txt 2023-02-23T12:57:08,267 writing manifest file '/tmp/pip-pip-egg-info-qvvc2io8/mitos.egg-info/SOURCES.txt' 2023-02-23T12:57:08,514 reading manifest file '/tmp/pip-pip-egg-info-qvvc2io8/mitos.egg-info/SOURCES.txt' 2023-02-23T12:57:08,517 reading manifest template 'MANIFEST.in' 2023-02-23T12:57:08,519 warning: no files found matching 'mitos/codons/gc.prt' 2023-02-23T12:57:08,523 adding license file 'LICENSE' 2023-02-23T12:57:08,535 writing manifest file '/tmp/pip-pip-egg-info-qvvc2io8/mitos.egg-info/SOURCES.txt' 2023-02-23T12:57:08,664 Preparing metadata (setup.py): finished with status 'done' 2023-02-23T12:57:08,676 Source in /tmp/pip-wheel-e6lrp1tc/mitos_5909bd87e1c74c4fbb1f5db5f927db30 has version 2.1.2, which satisfies requirement mitos==2.1.2 from https://files.pythonhosted.org/packages/74/63/f90f359df86c01e68f5c678eef30d929b9311e7bb80f16071a1532515a0a/mitos-2.1.2.tar.gz 2023-02-23T12:57:08,678 Removed mitos==2.1.2 from https://files.pythonhosted.org/packages/74/63/f90f359df86c01e68f5c678eef30d929b9311e7bb80f16071a1532515a0a/mitos-2.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-yty0eb2x' 2023-02-23T12:57:08,688 Created temporary directory: /tmp/pip-unpack-pbrskib2 2023-02-23T12:57:08,689 Building wheels for collected packages: mitos 2023-02-23T12:57:08,698 Created temporary directory: /tmp/pip-wheel-y07i6e5j 2023-02-23T12:57:08,699 Building wheel for mitos (setup.py): started 2023-02-23T12:57:08,701 Destination directory: /tmp/pip-wheel-y07i6e5j 2023-02-23T12:57:08,701 Running command python setup.py bdist_wheel 2023-02-23T12:57:10,582 running bdist_wheel 2023-02-23T12:57:10,744 running build 2023-02-23T12:57:10,745 running build_py 2023-02-23T12:57:10,804 creating build 2023-02-23T12:57:10,804 creating build/lib 2023-02-23T12:57:10,806 creating build/lib/mitos 2023-02-23T12:57:10,808 copying mitos/mitoch_revisions.py -> build/lib/mitos 2023-02-23T12:57:10,816 copying mitos/trnascan_parse_separate.py -> build/lib/mitos 2023-02-23T12:57:10,820 copying mitos/names.py -> build/lib/mitos 2023-02-23T12:57:10,823 copying mitos/mumcmp.py -> build/lib/mitos 2023-02-23T12:57:10,827 copying mitos/mitoloc.py -> build/lib/mitos 2023-02-23T12:57:10,831 copying mitos/create_prot_fasta.py -> build/lib/mitos 2023-02-23T12:57:10,835 copying mitos/trna-cm.py -> build/lib/mitos 2023-02-23T12:57:10,847 copying mitos/get-wancy.py -> build/lib/mitos 2023-02-23T12:57:10,852 copying mitos/__init__.py -> build/lib/mitos 2023-02-23T12:57:10,855 copying mitos/convert_tree.py -> build/lib/mitos 2023-02-23T12:57:10,862 copying mitos/codoncount.py -> build/lib/mitos 2023-02-23T12:57:10,866 copying mitos/skew.py -> build/lib/mitos 2023-02-23T12:57:10,871 copying mitos/removegene.py -> build/lib/mitos 2023-02-23T12:57:10,876 copying mitos/merge_results.py -> build/lib/mitos 2023-02-23T12:57:10,880 copying mitos/prepareFiles.py -> build/lib/mitos 2023-02-23T12:57:10,885 copying mitos/mitoscs.py -> build/lib/mitos 2023-02-23T12:57:10,892 copying mitos/inihit.py -> build/lib/mitos 2023-02-23T12:57:10,897 copying mitos/mitos-extension2.py -> build/lib/mitos 2023-02-23T12:57:10,903 copying mitos/CONFIG.py -> build/lib/mitos 2023-02-23T12:57:10,908 copying mitos/mitos-extension.py -> build/lib/mitos 2023-02-23T12:57:10,913 copying mitos/booreparser.py -> build/lib/mitos 2023-02-23T12:57:10,918 copying mitos/cmsearch_parse_separate.py -> build/lib/mitos 2023-02-23T12:57:10,922 copying mitos/ogre-geneorder.py -> build/lib/mitos 2023-02-23T12:57:10,926 copying mitos/update-mitolog.py -> build/lib/mitos 2023-02-23T12:57:10,931 copying mitos/trnadist.py -> build/lib/mitos 2023-02-23T12:57:10,938 creating build/lib/mitos/gfffile 2023-02-23T12:57:10,940 copying mitos/gfffile/__init__.py -> build/lib/mitos/gfffile 2023-02-23T12:57:10,946 creating build/lib/mitos/mitfi 2023-02-23T12:57:10,948 copying mitos/mitfi/__init__.py -> build/lib/mitos/mitfi 2023-02-23T12:57:10,956 creating build/lib/mitos/protfeat 2023-02-23T12:57:10,958 copying mitos/protfeat/__init__.py -> build/lib/mitos/protfeat 2023-02-23T12:57:10,966 creating build/lib/mitos/mitofile 2023-02-23T12:57:10,968 copying mitos/mitofile/__init__.py -> build/lib/mitos/mitofile 2023-02-23T12:57:10,974 creating build/lib/mitos/sequin 2023-02-23T12:57:10,976 copying mitos/sequin/__init__.py -> build/lib/mitos/sequin 2023-02-23T12:57:10,982 creating build/lib/mitos/blast 2023-02-23T12:57:10,984 copying mitos/blast/__init__.py -> build/lib/mitos/blast 2023-02-23T12:57:10,995 creating build/lib/mitos/tbl 2023-02-23T12:57:10,997 copying mitos/tbl/__init__.py -> build/lib/mitos/tbl 2023-02-23T12:57:11,003 creating build/lib/mitos/webserver 2023-02-23T12:57:11,005 copying mitos/webserver/__init__.py -> build/lib/mitos/webserver 2023-02-23T12:57:11,012 creating build/lib/mitos/feature 2023-02-23T12:57:11,014 copying mitos/feature/__init__.py -> build/lib/mitos/feature 2023-02-23T12:57:11,022 creating build/lib/mitos/mito 2023-02-23T12:57:11,024 copying mitos/mito/__init__.py -> build/lib/mitos/mito 2023-02-23T12:57:11,031 creating build/lib/mitos/trna 2023-02-23T12:57:11,034 copying mitos/trna/arwenscan.py -> build/lib/mitos/trna 2023-02-23T12:57:11,039 copying mitos/trna/trnascan.py -> build/lib/mitos/trna 2023-02-23T12:57:11,044 copying mitos/trna/__init__.py -> build/lib/mitos/trna 2023-02-23T12:57:11,050 creating build/lib/mitos/gb 2023-02-23T12:57:11,052 copying mitos/gb/unify.py -> build/lib/mitos/gb 2023-02-23T12:57:11,057 copying mitos/gb/__init__.py -> build/lib/mitos/gb 2023-02-23T12:57:11,065 creating build/lib/mitos/tax 2023-02-23T12:57:11,068 copying mitos/tax/__init__.py -> build/lib/mitos/tax 2023-02-23T12:57:11,073 creating build/lib/mitos/extprog 2023-02-23T12:57:11,075 copying mitos/extprog/__init__.py -> build/lib/mitos/extprog 2023-02-23T12:57:11,082 creating build/lib/mitos/rna 2023-02-23T12:57:11,083 copying mitos/rna/forester.py -> build/lib/mitos/rna 2023-02-23T12:57:11,088 copying mitos/rna/__init__.py -> build/lib/mitos/rna 2023-02-23T12:57:11,091 copying mitos/rna/vienna.py -> build/lib/mitos/rna 2023-02-23T12:57:11,097 creating build/lib/mitos/mergefeature 2023-02-23T12:57:11,098 copying mitos/mergefeature/__init__.py -> build/lib/mitos/mergefeature 2023-02-23T12:57:11,106 creating build/lib/mitos/update 2023-02-23T12:57:11,107 copying mitos/update/__init__.py -> build/lib/mitos/update 2023-02-23T12:57:11,115 creating build/lib/mitos/draw 2023-02-23T12:57:11,116 copying mitos/draw/__init__.py -> build/lib/mitos/draw 2023-02-23T12:57:11,122 creating build/lib/mitos/sequence 2023-02-23T12:57:11,124 copying mitos/sequence/degenerate.py -> build/lib/mitos/sequence 2023-02-23T12:57:11,127 copying mitos/sequence/__init__.py -> build/lib/mitos/sequence 2023-02-23T12:57:11,134 creating build/lib/mitos/bedfile 2023-02-23T12:57:11,135 copying mitos/bedfile/__init__.py -> build/lib/mitos/bedfile 2023-02-23T12:57:11,140 running egg_info 2023-02-23T12:57:11,263 writing mitos.egg-info/PKG-INFO 2023-02-23T12:57:11,267 writing dependency_links to mitos.egg-info/dependency_links.txt 2023-02-23T12:57:11,271 writing requirements to mitos.egg-info/requires.txt 2023-02-23T12:57:11,273 writing top-level names to mitos.egg-info/top_level.txt 2023-02-23T12:57:11,354 reading manifest file 'mitos.egg-info/SOURCES.txt' 2023-02-23T12:57:11,365 reading manifest template 'MANIFEST.in' 2023-02-23T12:57:11,366 warning: no files found matching 'mitos/codons/gc.prt' 2023-02-23T12:57:11,370 adding license file 'LICENSE' 2023-02-23T12:57:11,384 writing manifest file 'mitos.egg-info/SOURCES.txt' 2023-02-23T12:57:11,391 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'mitos.mitfi.parser' as data is deprecated, please list it in `packages`. 2023-02-23T12:57:11,392 !! 2023-02-23T12:57:11,393 ############################ 2023-02-23T12:57:11,393 # Package would be ignored # 2023-02-23T12:57:11,393 ############################ 2023-02-23T12:57:11,394 Python recognizes 'mitos.mitfi.parser' as an importable package, 2023-02-23T12:57:11,394 but it is not listed in the `packages` configuration of setuptools. 2023-02-23T12:57:11,395 'mitos.mitfi.parser' has been automatically added to the distribution only 2023-02-23T12:57:11,395 because it may contain data files, but this behavior is likely to change 2023-02-23T12:57:11,395 in future versions of setuptools (and therefore is considered deprecated). 2023-02-23T12:57:11,396 Please make sure that 'mitos.mitfi.parser' is included as a package by using 2023-02-23T12:57:11,396 the `packages` configuration field or the proper discovery methods 2023-02-23T12:57:11,397 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-23T12:57:11,397 instead of `find_packages(...)`/`find:`). 2023-02-23T12:57:11,397 You can read more about "package discovery" and "data files" on setuptools 2023-02-23T12:57:11,398 documentation page. 2023-02-23T12:57:11,399 !! 2023-02-23T12:57:11,399 check.warn(importable) 2023-02-23T12:57:11,405 copying mitos/plotprot.R -> build/lib/mitos 2023-02-23T12:57:11,409 copying mitos/plotrna.R -> build/lib/mitos 2023-02-23T12:57:11,413 copying mitos/plotstst.R -> build/lib/mitos 2023-02-23T12:57:11,419 creating build/lib/mitos/mitfi/parser 2023-02-23T12:57:11,421 copying mitos/mitfi/parser/improve_infernal_structure.jar -> build/lib/mitos/mitfi/parser 2023-02-23T12:57:11,425 copying mitos/mitfi/parser/mitfiGeneticCodes -> build/lib/mitos/mitfi/parser 2023-02-23T12:57:11,430 copying mitos/mitfi/parser/mitfi_import-1.1.jar -> build/lib/mitos/mitfi/parser 2023-02-23T12:57:11,437 copying mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/lib/mitos/mitfi/parser 2023-02-23T12:57:11,443 copying mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/lib/mitos/mitfi/parser 2023-02-23T12:57:11,449 copying mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/lib/mitos/mitfi/parser 2023-02-23T12:57:11,455 copying mitos/mitfi/parser/mitfi_import.jar -> build/lib/mitos/mitfi/parser 2023-02-23T12:57:11,461 copying mitos/webserver/help.txt -> build/lib/mitos/webserver 2023-02-23T12:57:11,467 copying mitos/webserver/history.txt -> build/lib/mitos/webserver 2023-02-23T12:57:11,471 copying mitos/webserver/index.txt -> build/lib/mitos/webserver 2023-02-23T12:57:11,476 copying mitos/webserver/news.txt -> build/lib/mitos/webserver 2023-02-23T12:57:11,481 copying mitos/webserver/upload.txt -> build/lib/mitos/webserver 2023-02-23T12:57:11,485 copying mitos/webserver/wait.txt -> build/lib/mitos/webserver 2023-02-23T12:57:11,510 running build_scripts 2023-02-23T12:57:11,511 creating build/scripts-3.7 2023-02-23T12:57:11,514 copying and adjusting runmitos.py -> build/scripts-3.7 2023-02-23T12:57:11,524 copying and adjusting drawmitos.py -> build/scripts-3.7 2023-02-23T12:57:11,528 copying and adjusting analyse.py -> build/scripts-3.7 2023-02-23T12:57:11,534 copying and adjusting gcpp.py -> build/scripts-3.7 2023-02-23T12:57:11,539 copying and adjusting geneorder.py -> build/scripts-3.7 2023-02-23T12:57:11,545 copying and adjusting getfeatures.py -> build/scripts-3.7 2023-02-23T12:57:11,550 copying and adjusting getinfo.py -> build/scripts-3.7 2023-02-23T12:57:11,554 copying and adjusting refseqsplit.py -> build/scripts-3.7 2023-02-23T12:57:11,558 copying and adjusting subseq.py -> build/scripts-3.7 2023-02-23T12:57:11,562 copying and adjusting taxtree.py -> build/scripts-3.7 2023-02-23T12:57:11,567 copying update-blastdb.py -> build/scripts-3.7 2023-02-23T12:57:11,571 copying mitos/plotprot.R -> build/scripts-3.7 2023-02-23T12:57:11,575 copying mitos/plotstst.R -> build/scripts-3.7 2023-02-23T12:57:11,580 copying mitos/plotrna.R -> build/scripts-3.7 2023-02-23T12:57:11,583 changing mode of build/scripts-3.7/runmitos.py from 644 to 755 2023-02-23T12:57:11,584 changing mode of build/scripts-3.7/drawmitos.py from 644 to 755 2023-02-23T12:57:11,584 changing mode of build/scripts-3.7/analyse.py from 644 to 755 2023-02-23T12:57:11,585 changing mode of build/scripts-3.7/gcpp.py from 644 to 755 2023-02-23T12:57:11,586 changing mode of build/scripts-3.7/geneorder.py from 644 to 755 2023-02-23T12:57:11,587 changing mode of build/scripts-3.7/getfeatures.py from 644 to 755 2023-02-23T12:57:11,587 changing mode of build/scripts-3.7/getinfo.py from 644 to 755 2023-02-23T12:57:11,588 changing mode of build/scripts-3.7/refseqsplit.py from 644 to 755 2023-02-23T12:57:11,589 changing mode of build/scripts-3.7/subseq.py from 644 to 755 2023-02-23T12:57:11,590 changing mode of build/scripts-3.7/taxtree.py from 644 to 755 2023-02-23T12:57:11,590 changing mode of build/scripts-3.7/update-blastdb.py from 644 to 755 2023-02-23T12:57:11,649 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-02-23T12:57:11,649 setuptools.SetuptoolsDeprecationWarning, 2023-02-23T12:57:11,702 installing to build/bdist.linux-armv7l/wheel 2023-02-23T12:57:11,703 running install 2023-02-23T12:57:11,764 running install_lib 2023-02-23T12:57:11,820 creating build/bdist.linux-armv7l 2023-02-23T12:57:11,821 creating build/bdist.linux-armv7l/wheel 2023-02-23T12:57:11,826 creating build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:11,829 creating build/bdist.linux-armv7l/wheel/mitos/gfffile 2023-02-23T12:57:11,831 copying build/lib/mitos/gfffile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gfffile 2023-02-23T12:57:11,836 creating build/bdist.linux-armv7l/wheel/mitos/mitfi 2023-02-23T12:57:11,839 creating build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-23T12:57:11,841 copying build/lib/mitos/mitfi/parser/improve_infernal_structure.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-23T12:57:11,845 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-23T12:57:11,851 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-23T12:57:11,857 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-23T12:57:11,862 copying build/lib/mitos/mitfi/parser/mitfi_import.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-23T12:57:11,867 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-23T12:57:11,873 copying build/lib/mitos/mitfi/parser/mitfiGeneticCodes -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-23T12:57:11,877 copying build/lib/mitos/mitfi/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitfi 2023-02-23T12:57:11,882 copying build/lib/mitos/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:11,886 copying build/lib/mitos/mitoch_revisions.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:11,894 creating build/bdist.linux-armv7l/wheel/mitos/protfeat 2023-02-23T12:57:11,897 copying build/lib/mitos/protfeat/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/protfeat 2023-02-23T12:57:11,903 copying build/lib/mitos/trnascan_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:11,909 creating build/bdist.linux-armv7l/wheel/mitos/mitofile 2023-02-23T12:57:11,911 copying build/lib/mitos/mitofile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitofile 2023-02-23T12:57:11,917 creating build/bdist.linux-armv7l/wheel/mitos/sequin 2023-02-23T12:57:11,919 copying build/lib/mitos/sequin/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequin 2023-02-23T12:57:11,925 creating build/bdist.linux-armv7l/wheel/mitos/blast 2023-02-23T12:57:11,927 copying build/lib/mitos/blast/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/blast 2023-02-23T12:57:11,937 copying build/lib/mitos/names.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:11,942 creating build/bdist.linux-armv7l/wheel/mitos/tbl 2023-02-23T12:57:11,944 copying build/lib/mitos/tbl/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tbl 2023-02-23T12:57:11,949 copying build/lib/mitos/mumcmp.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:11,955 creating build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T12:57:11,957 copying build/lib/mitos/webserver/history.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T12:57:11,962 copying build/lib/mitos/webserver/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T12:57:11,967 copying build/lib/mitos/webserver/index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T12:57:11,972 copying build/lib/mitos/webserver/upload.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T12:57:11,976 copying build/lib/mitos/webserver/wait.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T12:57:11,980 copying build/lib/mitos/webserver/help.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T12:57:11,986 copying build/lib/mitos/webserver/news.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T12:57:11,991 copying build/lib/mitos/mitoloc.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:11,995 copying build/lib/mitos/create_prot_fasta.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,001 copying build/lib/mitos/trna-cm.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,013 copying build/lib/mitos/get-wancy.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,018 copying build/lib/mitos/__init__.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,023 creating build/bdist.linux-armv7l/wheel/mitos/feature 2023-02-23T12:57:12,025 copying build/lib/mitos/feature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/feature 2023-02-23T12:57:12,032 copying build/lib/mitos/convert_tree.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,037 copying build/lib/mitos/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,042 creating build/bdist.linux-armv7l/wheel/mitos/mito 2023-02-23T12:57:12,043 copying build/lib/mitos/mito/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mito 2023-02-23T12:57:12,049 creating build/bdist.linux-armv7l/wheel/mitos/trna 2023-02-23T12:57:12,051 copying build/lib/mitos/trna/arwenscan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2023-02-23T12:57:12,056 copying build/lib/mitos/trna/trnascan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2023-02-23T12:57:12,062 copying build/lib/mitos/trna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2023-02-23T12:57:12,066 copying build/lib/mitos/codoncount.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,069 copying build/lib/mitos/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,073 copying build/lib/mitos/skew.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,079 creating build/bdist.linux-armv7l/wheel/mitos/gb 2023-02-23T12:57:12,081 copying build/lib/mitos/gb/unify.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2023-02-23T12:57:12,085 copying build/lib/mitos/gb/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2023-02-23T12:57:12,093 creating build/bdist.linux-armv7l/wheel/mitos/tax 2023-02-23T12:57:12,095 copying build/lib/mitos/tax/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tax 2023-02-23T12:57:12,099 creating build/bdist.linux-armv7l/wheel/mitos/extprog 2023-02-23T12:57:12,101 copying build/lib/mitos/extprog/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/extprog 2023-02-23T12:57:12,106 copying build/lib/mitos/removegene.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,109 copying build/lib/mitos/merge_results.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,113 copying build/lib/mitos/prepareFiles.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,117 copying build/lib/mitos/mitoscs.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,123 copying build/lib/mitos/inihit.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,127 copying build/lib/mitos/mitos-extension2.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,132 copying build/lib/mitos/CONFIG.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,136 copying build/lib/mitos/mitos-extension.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,141 copying build/lib/mitos/booreparser.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,146 creating build/bdist.linux-armv7l/wheel/mitos/rna 2023-02-23T12:57:12,148 copying build/lib/mitos/rna/forester.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2023-02-23T12:57:12,152 copying build/lib/mitos/rna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2023-02-23T12:57:12,155 copying build/lib/mitos/rna/vienna.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2023-02-23T12:57:12,159 copying build/lib/mitos/cmsearch_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,163 copying build/lib/mitos/ogre-geneorder.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,167 creating build/bdist.linux-armv7l/wheel/mitos/mergefeature 2023-02-23T12:57:12,169 copying build/lib/mitos/mergefeature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mergefeature 2023-02-23T12:57:12,174 copying build/lib/mitos/update-mitolog.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,178 copying build/lib/mitos/trnadist.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T12:57:12,184 creating build/bdist.linux-armv7l/wheel/mitos/update 2023-02-23T12:57:12,186 copying build/lib/mitos/update/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/update 2023-02-23T12:57:12,192 creating build/bdist.linux-armv7l/wheel/mitos/draw 2023-02-23T12:57:12,194 copying build/lib/mitos/draw/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/draw 2023-02-23T12:57:12,222 creating build/bdist.linux-armv7l/wheel/mitos/sequence 2023-02-23T12:57:12,223 copying build/lib/mitos/sequence/degenerate.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2023-02-23T12:57:12,227 copying build/lib/mitos/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2023-02-23T12:57:12,233 creating build/bdist.linux-armv7l/wheel/mitos/bedfile 2023-02-23T12:57:12,234 copying build/lib/mitos/bedfile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/bedfile 2023-02-23T12:57:12,238 running install_egg_info 2023-02-23T12:57:12,303 Copying mitos.egg-info to build/bdist.linux-armv7l/wheel/mitos-2.1.2-py3.7.egg-info 2023-02-23T12:57:12,321 running install_scripts 2023-02-23T12:57:12,323 creating build/bdist.linux-armv7l/wheel/mitos-2.1.2.data 2023-02-23T12:57:12,324 creating build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts 2023-02-23T12:57:12,326 copying build/scripts-3.7/subseq.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts 2023-02-23T12:57:12,331 copying build/scripts-3.7/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts 2023-02-23T12:57:12,334 copying build/scripts-3.7/analyse.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts 2023-02-23T12:57:12,339 copying build/scripts-3.7/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts 2023-02-23T12:57:12,343 copying build/scripts-3.7/getfeatures.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts 2023-02-23T12:57:12,347 copying build/scripts-3.7/geneorder.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts 2023-02-23T12:57:12,351 copying build/scripts-3.7/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts 2023-02-23T12:57:12,355 copying build/scripts-3.7/update-blastdb.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts 2023-02-23T12:57:12,358 copying build/scripts-3.7/getinfo.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts 2023-02-23T12:57:12,362 copying build/scripts-3.7/drawmitos.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts 2023-02-23T12:57:12,365 copying build/scripts-3.7/refseqsplit.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts 2023-02-23T12:57:12,369 copying build/scripts-3.7/taxtree.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts 2023-02-23T12:57:12,373 copying build/scripts-3.7/gcpp.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts 2023-02-23T12:57:12,377 copying build/scripts-3.7/runmitos.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts 2023-02-23T12:57:12,382 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts/subseq.py to 755 2023-02-23T12:57:12,383 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts/plotprot.R to 755 2023-02-23T12:57:12,384 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts/analyse.py to 755 2023-02-23T12:57:12,384 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts/plotrna.R to 755 2023-02-23T12:57:12,385 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts/getfeatures.py to 755 2023-02-23T12:57:12,386 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts/geneorder.py to 755 2023-02-23T12:57:12,387 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts/plotstst.R to 755 2023-02-23T12:57:12,387 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts/update-blastdb.py to 755 2023-02-23T12:57:12,388 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts/getinfo.py to 755 2023-02-23T12:57:12,389 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts/drawmitos.py to 755 2023-02-23T12:57:12,389 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts/refseqsplit.py to 755 2023-02-23T12:57:12,390 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts/taxtree.py to 755 2023-02-23T12:57:12,391 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts/gcpp.py to 755 2023-02-23T12:57:12,391 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.2.data/scripts/runmitos.py to 755 2023-02-23T12:57:12,421 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-02-23T12:57:12,429 creating build/bdist.linux-armv7l/wheel/mitos-2.1.2.dist-info/WHEEL 2023-02-23T12:57:12,433 creating '/tmp/pip-wheel-y07i6e5j/mitos-2.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-02-23T12:57:12,441 adding 'mitos/CONFIG.py' 2023-02-23T12:57:12,443 adding 'mitos/__init__.py' 2023-02-23T12:57:12,447 adding 'mitos/booreparser.py' 2023-02-23T12:57:12,451 adding 'mitos/cmsearch_parse_separate.py' 2023-02-23T12:57:12,453 adding 'mitos/codoncount.py' 2023-02-23T12:57:12,462 adding 'mitos/convert_tree.py' 2023-02-23T12:57:12,467 adding 'mitos/create_prot_fasta.py' 2023-02-23T12:57:12,470 adding 'mitos/get-wancy.py' 2023-02-23T12:57:12,474 adding 'mitos/inihit.py' 2023-02-23T12:57:12,478 adding 'mitos/merge_results.py' 2023-02-23T12:57:12,490 adding 'mitos/mitoch_revisions.py' 2023-02-23T12:57:12,495 adding 'mitos/mitoloc.py' 2023-02-23T12:57:12,500 adding 'mitos/mitos-extension.py' 2023-02-23T12:57:12,505 adding 'mitos/mitos-extension2.py' 2023-02-23T12:57:12,518 adding 'mitos/mitoscs.py' 2023-02-23T12:57:12,522 adding 'mitos/mumcmp.py' 2023-02-23T12:57:12,524 adding 'mitos/names.py' 2023-02-23T12:57:12,527 adding 'mitos/ogre-geneorder.py' 2023-02-23T12:57:12,530 adding 'mitos/plotprot.R' 2023-02-23T12:57:12,533 adding 'mitos/plotrna.R' 2023-02-23T12:57:12,535 adding 'mitos/plotstst.R' 2023-02-23T12:57:12,538 adding 'mitos/prepareFiles.py' 2023-02-23T12:57:12,541 adding 'mitos/removegene.py' 2023-02-23T12:57:12,546 adding 'mitos/skew.py' 2023-02-23T12:57:12,585 adding 'mitos/trna-cm.py' 2023-02-23T12:57:12,596 adding 'mitos/trnadist.py' 2023-02-23T12:57:12,599 adding 'mitos/trnascan_parse_separate.py' 2023-02-23T12:57:12,602 adding 'mitos/update-mitolog.py' 2023-02-23T12:57:12,607 adding 'mitos/bedfile/__init__.py' 2023-02-23T12:57:12,634 adding 'mitos/blast/__init__.py' 2023-02-23T12:57:12,639 adding 'mitos/draw/__init__.py' 2023-02-23T12:57:12,643 adding 'mitos/extprog/__init__.py' 2023-02-23T12:57:12,657 adding 'mitos/feature/__init__.py' 2023-02-23T12:57:12,673 adding 'mitos/gb/__init__.py' 2023-02-23T12:57:12,678 adding 'mitos/gb/unify.py' 2023-02-23T12:57:12,682 adding 'mitos/gfffile/__init__.py' 2023-02-23T12:57:12,691 adding 'mitos/mergefeature/__init__.py' 2023-02-23T12:57:12,699 adding 'mitos/mitfi/__init__.py' 2023-02-23T12:57:12,704 adding 'mitos/mitfi/parser/improve_infernal_structure.jar' 2023-02-23T12:57:12,707 adding 'mitos/mitfi/parser/mitfiGeneticCodes' 2023-02-23T12:57:12,716 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar' 2023-02-23T12:57:12,726 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.old' 2023-02-23T12:57:12,736 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.org' 2023-02-23T12:57:12,745 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ' 2023-02-23T12:57:12,755 adding 'mitos/mitfi/parser/mitfi_import.jar' 2023-02-23T12:57:12,760 adding 'mitos/mito/__init__.py' 2023-02-23T12:57:12,764 adding 'mitos/mitofile/__init__.py' 2023-02-23T12:57:12,773 adding 'mitos/protfeat/__init__.py' 2023-02-23T12:57:12,777 adding 'mitos/rna/__init__.py' 2023-02-23T12:57:12,780 adding 'mitos/rna/forester.py' 2023-02-23T12:57:12,786 adding 'mitos/rna/vienna.py' 2023-02-23T12:57:12,793 adding 'mitos/sequence/__init__.py' 2023-02-23T12:57:12,796 adding 'mitos/sequence/degenerate.py' 2023-02-23T12:57:12,800 adding 'mitos/sequin/__init__.py' 2023-02-23T12:57:12,804 adding 'mitos/tax/__init__.py' 2023-02-23T12:57:12,808 adding 'mitos/tbl/__init__.py' 2023-02-23T12:57:12,812 adding 'mitos/trna/__init__.py' 2023-02-23T12:57:12,816 adding 'mitos/trna/arwenscan.py' 2023-02-23T12:57:12,821 adding 'mitos/trna/trnascan.py' 2023-02-23T12:57:12,829 adding 'mitos/update/__init__.py' 2023-02-23T12:57:12,835 adding 'mitos/webserver/__init__.py' 2023-02-23T12:57:12,844 adding 'mitos/webserver/help.txt' 2023-02-23T12:57:12,847 adding 'mitos/webserver/history.txt' 2023-02-23T12:57:12,850 adding 'mitos/webserver/index.txt' 2023-02-23T12:57:12,853 adding 'mitos/webserver/news.txt' 2023-02-23T12:57:12,856 adding 'mitos/webserver/upload.txt' 2023-02-23T12:57:12,858 adding 'mitos/webserver/wait.txt' 2023-02-23T12:57:12,865 adding 'mitos-2.1.2.data/scripts/analyse.py' 2023-02-23T12:57:12,868 adding 'mitos-2.1.2.data/scripts/drawmitos.py' 2023-02-23T12:57:12,871 adding 'mitos-2.1.2.data/scripts/gcpp.py' 2023-02-23T12:57:12,877 adding 'mitos-2.1.2.data/scripts/geneorder.py' 2023-02-23T12:57:12,880 adding 'mitos-2.1.2.data/scripts/getfeatures.py' 2023-02-23T12:57:12,883 adding 'mitos-2.1.2.data/scripts/getinfo.py' 2023-02-23T12:57:12,886 adding 'mitos-2.1.2.data/scripts/plotprot.R' 2023-02-23T12:57:12,889 adding 'mitos-2.1.2.data/scripts/plotrna.R' 2023-02-23T12:57:12,892 adding 'mitos-2.1.2.data/scripts/plotstst.R' 2023-02-23T12:57:12,895 adding 'mitos-2.1.2.data/scripts/refseqsplit.py' 2023-02-23T12:57:12,908 adding 'mitos-2.1.2.data/scripts/runmitos.py' 2023-02-23T12:57:12,913 adding 'mitos-2.1.2.data/scripts/subseq.py' 2023-02-23T12:57:12,916 adding 'mitos-2.1.2.data/scripts/taxtree.py' 2023-02-23T12:57:12,919 adding 'mitos-2.1.2.data/scripts/update-blastdb.py' 2023-02-23T12:57:12,924 adding 'mitos-2.1.2.dist-info/LICENSE' 2023-02-23T12:57:12,926 adding 'mitos-2.1.2.dist-info/METADATA' 2023-02-23T12:57:12,928 adding 'mitos-2.1.2.dist-info/WHEEL' 2023-02-23T12:57:12,929 adding 'mitos-2.1.2.dist-info/top_level.txt' 2023-02-23T12:57:12,932 adding 'mitos-2.1.2.dist-info/RECORD' 2023-02-23T12:57:12,950 removing build/bdist.linux-armv7l/wheel 2023-02-23T12:57:13,150 Building wheel for mitos (setup.py): finished with status 'done' 2023-02-23T12:57:13,167 Created wheel for mitos: filename=mitos-2.1.2-py3-none-any.whl size=349982 sha256=c98234624cb7939861858030fbac10b88073159ea24b334b42e1cfd70254088d 2023-02-23T12:57:13,169 Stored in directory: /tmp/pip-ephem-wheel-cache-ykq9fu1t/wheels/27/40/f3/470905ea548137346d3673794ee0f290c07cc539a1f0d2bfaa 2023-02-23T12:57:13,200 Successfully built mitos 2023-02-23T12:57:13,240 Removed build tracker: '/tmp/pip-build-tracker-yty0eb2x'