2023-02-23T13:29:10,999 Created temporary directory: /tmp/pip-ephem-wheel-cache-fprzer56 2023-02-23T13:29:11,005 Created temporary directory: /tmp/pip-build-tracker-sl4ns46j 2023-02-23T13:29:11,006 Initialized build tracking at /tmp/pip-build-tracker-sl4ns46j 2023-02-23T13:29:11,006 Created build tracker: /tmp/pip-build-tracker-sl4ns46j 2023-02-23T13:29:11,006 Entered build tracker: /tmp/pip-build-tracker-sl4ns46j 2023-02-23T13:29:11,008 Created temporary directory: /tmp/pip-wheel-5vsdd4gw 2023-02-23T13:29:11,018 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-23T13:29:11,024 Created temporary directory: /tmp/pip-ephem-wheel-cache-s_a49jaf 2023-02-23T13:29:11,084 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-23T13:29:11,091 2 location(s) to search for versions of mitos: 2023-02-23T13:29:11,091 * https://pypi.org/simple/mitos/ 2023-02-23T13:29:11,091 * https://www.piwheels.org/simple/mitos/ 2023-02-23T13:29:11,092 Fetching project page and analyzing links: https://pypi.org/simple/mitos/ 2023-02-23T13:29:11,093 Getting page https://pypi.org/simple/mitos/ 2023-02-23T13:29:11,097 Found index url https://pypi.org/simple 2023-02-23T13:29:11,340 Fetched page https://pypi.org/simple/mitos/ as application/vnd.pypi.simple.v1+json 2023-02-23T13:29:11,352 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/ae/2d/5f1e66a046e59cf6088f44d4a02cae66d498e226365af5fd42e2d660a814/mitos-1.0-py2-none-any.whl (from https://pypi.org/simple/mitos/) 2023-02-23T13:29:11,353 Found link https://files.pythonhosted.org/packages/c5/6e/e1aae4079b0ebbce64897f54f5cd4a3953a0cb741026d16e14e7ae272a48/mitos-1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0 2023-02-23T13:29:11,354 Found link https://files.pythonhosted.org/packages/d7/19/816780e09ecc6a783f146d80bcde73eb7940d074f4feea137ec954bfd437/mitos-1.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.1 2023-02-23T13:29:11,354 Found link https://files.pythonhosted.org/packages/38/c7/3dd90bcf0d61c69226ef1632baa3ad0e96d798de36053b4b56ed7660dfdb/mitos-1.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.2 2023-02-23T13:29:11,355 Found link https://files.pythonhosted.org/packages/e2/d4/864af2605cc1f45cc78cfed740bbdfba1da59ea9a42c24ef5077c9218501/mitos-1.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.3 2023-02-23T13:29:11,356 Found link https://files.pythonhosted.org/packages/8d/32/1aa5eb88f964c3cf5441622648cc4ae30f115db32bdd5dc5bf194a3c112c/mitos-1.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.4 2023-02-23T13:29:11,356 Found link https://files.pythonhosted.org/packages/ff/49/f4c711126604aa86abeeda44378786a0903bc53970acf4afa5feb68f72b8/mitos-1.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.5 2023-02-23T13:29:11,357 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/c3/cd/96e0e1ad1551b8fff56ab89e61231809494dec3ee80f51117b4f5d432452/mitos-1.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2023-02-23T13:29:11,358 Found link https://files.pythonhosted.org/packages/ce/33/46fd40fd9f4c11f5bf296c2c092f59e36dee233d71a0f032b34c2a64c7ba/mitos-1.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.0 2023-02-23T13:29:11,359 Found link https://files.pythonhosted.org/packages/b3/a0/5268d8fec841240195c19e704b552a8b3060768c6710c67c67350ea60f13/mitos-1.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.1 2023-02-23T13:29:11,359 Found link https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.1 2023-02-23T13:29:11,360 Found link https://files.pythonhosted.org/packages/d7/53/5d215fe8689055dd329a27202f9dc7f66e23548f3d2ad3fa55d98dc56988/mitos-2.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.2 2023-02-23T13:29:11,361 Found link https://files.pythonhosted.org/packages/cd/97/a8bf95d5e26b51071d9f342dc475891425b223b6add347a6dbf9412937f1/mitos-2.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.3 2023-02-23T13:29:11,361 Found link https://files.pythonhosted.org/packages/39/9f/6cdac19a8d50915e2e5285b447077459af9c6524f980ded6657dc205593d/mitos-2.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.4 2023-02-23T13:29:11,362 Found link https://files.pythonhosted.org/packages/d0/16/8040a37887377e3992b0874ab441af54e16030fd23eb844bbf5293597c99/mitos-2.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.5 2023-02-23T13:29:11,363 Found link https://files.pythonhosted.org/packages/40/ef/5a93579c1ebc63ca8fe71cfe541bca389a0f9410b9a2c1ceff148f83af79/mitos-2.0.6.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.6 2023-02-23T13:29:11,363 Found link https://files.pythonhosted.org/packages/1f/a2/32eb96227aae3a719794cc922d839b8c38ee5c315087bf095792c48f996d/mitos-2.0.7.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.7 2023-02-23T13:29:11,368 Found link https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.8 2023-02-23T13:29:11,369 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/9d/93/5f2a1097bfa507acbf7dd6ac677f6df14df61692cccb42d28c34edb7ca5b/mitos-2.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2023-02-23T13:29:11,370 Found link https://files.pythonhosted.org/packages/f8/f4/2950dea175f0bda896b88ac2ac13007a1d007252a583ddd328b176fb54a5/mitos-2.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.0 2023-02-23T13:29:11,370 Found link https://files.pythonhosted.org/packages/57/78/2fde036a6c767aa5fb8c1102526af749ee13ad426b295289265c548384f9/mitos-2.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.1 2023-02-23T13:29:11,371 Found link https://files.pythonhosted.org/packages/74/63/f90f359df86c01e68f5c678eef30d929b9311e7bb80f16071a1532515a0a/mitos-2.1.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.2 2023-02-23T13:29:11,372 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitos/ 2023-02-23T13:29:11,373 Getting page https://www.piwheels.org/simple/mitos/ 2023-02-23T13:29:11,375 Found index url https://www.piwheels.org/simple 2023-02-23T13:29:11,602 Fetched page https://www.piwheels.org/simple/mitos/ as text/html 2023-02-23T13:29:11,617 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.2-py3-none-any.whl#sha256=c98234624cb7939861858030fbac10b88073159ea24b334b42e1cfd70254088d (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,617 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.1-py3-none-any.whl#sha256=698670abccda0918af0b490888cb195f86172e217766c9672bfedae33666ac82 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,618 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.0-py3-none-any.whl#sha256=d4b006045b98620155cbed38de6ecf0d0ffb030cebc4d6e6e947cb015b8ce746 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,618 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.8-py3-none-any.whl#sha256=5e88aa49c5bba746d511e0e619295e3c59916c71ba94246f984e44dcfef6a06c (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,619 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.7-py3-none-any.whl#sha256=97e98856e946735f44b3df83d67645e0dac8b411edb7774df74c00a44832e1d6 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,620 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.6-py3-none-any.whl#sha256=8fba2e7cf9c22c6a728a1f8141764a77a6a4a27d7f7e50106b6e43832857b149 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,620 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.5-py3-none-any.whl#sha256=ed4998969ebae7bf1688b78cdac8f19ca359f123ea79c2acd2654dd454a53f22 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,621 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.4-py3-none-any.whl#sha256=71ac10ffdc0a236d68e4fd82a700ae35a92f0b23a09242c8b99485ccbadb10cc (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,621 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.3-py3-none-any.whl#sha256=4da7d3530901e0732adc63ab4afa0c5d9a40558469b2ccee71ea4fbad466603b (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,622 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.2-py3-none-any.whl#sha256=0cd775b72e2dca4acf2f9c6f4d591abaeb00b983e4882fcf536d934a8263d342 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,622 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.1-py3-none-any.whl#sha256=307713427f698c0f3449d782d86287f1494fd2ff773a9fc407fbd29a0de53aed (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,623 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.0-py3-none-any.whl#sha256=424b5172258baf2837d8a45e89224c12fdc3cc2a8f4ba0894e5c74111e754e5d (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,623 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.5-py3-none-any.whl#sha256=f27a041efc520420cbffbb63a6c428a2ace092d6ffdc47942d6b9c434a281629 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,624 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.4-py3-none-any.whl#sha256=4c35b6595c7a62189502f6becaed4b2fe147f7ed6c6ee8d6b69fb4fda5e2139a (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,624 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.3-py3-none-any.whl#sha256=7b62f2fcef8414d2a429f2f3c033e85c9377805612113e7103fa6793aa083cbc (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,625 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.2-py3-none-any.whl#sha256=ba6a5f7a1d3a0a95106d401e13f7639c5ed2ecb367ab7899e2204b14aa9930a1 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,625 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.1-py3-none-any.whl#sha256=d216729f10eb3463d947658451c8f70fd97a9b2ca94cea55221f7a50f85749e2 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,626 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0-py3-none-any.whl#sha256=4f914c63f700f85163b395353782bcb87e49392f63c151f387dd4514694d0ac1 (from https://www.piwheels.org/simple/mitos/) 2023-02-23T13:29:11,626 Skipping link: not a file: https://www.piwheels.org/simple/mitos/ 2023-02-23T13:29:11,627 Skipping link: not a file: https://pypi.org/simple/mitos/ 2023-02-23T13:29:11,663 Given no hashes to check 1 links for project 'mitos': discarding no candidates 2023-02-23T13:29:11,691 Collecting mitos==1.1.1 2023-02-23T13:29:11,696 Created temporary directory: /tmp/pip-unpack-il1wg145 2023-02-23T13:29:11,937 Downloading mitos-1.1.1.tar.gz (246 kB) 2023-02-23T13:29:12,438 Added mitos==1.1.1 from https://files.pythonhosted.org/packages/b3/a0/5268d8fec841240195c19e704b552a8b3060768c6710c67c67350ea60f13/mitos-1.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-sl4ns46j' 2023-02-23T13:29:12,440 Running setup.py (path:/tmp/pip-wheel-5vsdd4gw/mitos_3918985e24ea46b1b29f60e75e1779c1/setup.py) egg_info for package mitos 2023-02-23T13:29:12,442 Created temporary directory: /tmp/pip-pip-egg-info-ahoq4d57 2023-02-23T13:29:12,442 Preparing metadata (setup.py): started 2023-02-23T13:29:12,444 Running command python setup.py egg_info 2023-02-23T13:29:13,929 running egg_info 2023-02-23T13:29:13,931 creating /tmp/pip-pip-egg-info-ahoq4d57/mitos.egg-info 2023-02-23T13:29:13,983 writing /tmp/pip-pip-egg-info-ahoq4d57/mitos.egg-info/PKG-INFO 2023-02-23T13:29:13,987 writing dependency_links to /tmp/pip-pip-egg-info-ahoq4d57/mitos.egg-info/dependency_links.txt 2023-02-23T13:29:13,992 writing requirements to /tmp/pip-pip-egg-info-ahoq4d57/mitos.egg-info/requires.txt 2023-02-23T13:29:13,994 writing top-level names to /tmp/pip-pip-egg-info-ahoq4d57/mitos.egg-info/top_level.txt 2023-02-23T13:29:13,997 writing manifest file '/tmp/pip-pip-egg-info-ahoq4d57/mitos.egg-info/SOURCES.txt' 2023-02-23T13:29:14,247 reading manifest file '/tmp/pip-pip-egg-info-ahoq4d57/mitos.egg-info/SOURCES.txt' 2023-02-23T13:29:14,250 reading manifest template 'MANIFEST.in' 2023-02-23T13:29:14,256 adding license file 'LICENSE' 2023-02-23T13:29:14,266 writing manifest file '/tmp/pip-pip-egg-info-ahoq4d57/mitos.egg-info/SOURCES.txt' 2023-02-23T13:29:14,383 Preparing metadata (setup.py): finished with status 'done' 2023-02-23T13:29:14,396 Source in /tmp/pip-wheel-5vsdd4gw/mitos_3918985e24ea46b1b29f60e75e1779c1 has version 1.1.1, which satisfies requirement mitos==1.1.1 from https://files.pythonhosted.org/packages/b3/a0/5268d8fec841240195c19e704b552a8b3060768c6710c67c67350ea60f13/mitos-1.1.1.tar.gz 2023-02-23T13:29:14,398 Removed mitos==1.1.1 from https://files.pythonhosted.org/packages/b3/a0/5268d8fec841240195c19e704b552a8b3060768c6710c67c67350ea60f13/mitos-1.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-sl4ns46j' 2023-02-23T13:29:14,409 Created temporary directory: /tmp/pip-unpack-upd8u3vs 2023-02-23T13:29:14,410 Building wheels for collected packages: mitos 2023-02-23T13:29:14,420 Created temporary directory: /tmp/pip-wheel-uaeddiih 2023-02-23T13:29:14,420 Building wheel for mitos (setup.py): started 2023-02-23T13:29:14,422 Destination directory: /tmp/pip-wheel-uaeddiih 2023-02-23T13:29:14,423 Running command python setup.py bdist_wheel 2023-02-23T13:29:16,379 running bdist_wheel 2023-02-23T13:29:16,537 running build 2023-02-23T13:29:16,538 running build_py 2023-02-23T13:29:16,597 creating build 2023-02-23T13:29:16,598 creating build/lib 2023-02-23T13:29:16,600 creating build/lib/mitos 2023-02-23T13:29:16,602 copying mitos/ogre-geneorder.py -> build/lib/mitos 2023-02-23T13:29:16,607 copying mitos/mitoloc.py -> build/lib/mitos 2023-02-23T13:29:16,611 copying mitos/skew.py -> build/lib/mitos 2023-02-23T13:29:16,616 copying mitos/create_prot_fasta.py -> build/lib/mitos 2023-02-23T13:29:16,621 copying mitos/update-mitolog.py -> build/lib/mitos 2023-02-23T13:29:16,626 copying mitos/trna-cm.py -> build/lib/mitos 2023-02-23T13:29:16,644 copying mitos/prepareFiles.py -> build/lib/mitos 2023-02-23T13:29:16,647 copying mitos/mitoch_revisions.py -> build/lib/mitos 2023-02-23T13:29:16,655 copying mitos/mitos-extension2.py -> build/lib/mitos 2023-02-23T13:29:16,660 copying mitos/booreparser.py -> build/lib/mitos 2023-02-23T13:29:16,665 copying mitos/trnadist.py -> build/lib/mitos 2023-02-23T13:29:16,671 copying mitos/__init__.py -> build/lib/mitos 2023-02-23T13:29:16,675 copying mitos/CONFIG.py -> build/lib/mitos 2023-02-23T13:29:16,679 copying mitos/inihit.py -> build/lib/mitos 2023-02-23T13:29:16,685 copying mitos/removegene.py -> build/lib/mitos 2023-02-23T13:29:16,689 copying mitos/mitos-extension.py -> build/lib/mitos 2023-02-23T13:29:16,694 copying mitos/convert_tree.py -> build/lib/mitos 2023-02-23T13:29:16,700 copying mitos/update-blastdb.py -> build/lib/mitos 2023-02-23T13:29:16,705 creating build/lib/mitos/mitfi 2023-02-23T13:29:16,708 copying mitos/mitfi/__init__.py -> build/lib/mitos/mitfi 2023-02-23T13:29:16,714 creating build/lib/mitos/gfffile 2023-02-23T13:29:16,716 copying mitos/gfffile/__init__.py -> build/lib/mitos/gfffile 2023-02-23T13:29:16,721 creating build/lib/mitos/mitofile 2023-02-23T13:29:16,723 copying mitos/mitofile/__init__.py -> build/lib/mitos/mitofile 2023-02-23T13:29:16,728 creating build/lib/mitos/draw 2023-02-23T13:29:16,729 copying mitos/draw/__init__.py -> build/lib/mitos/draw 2023-02-23T13:29:16,735 creating build/lib/mitos/rna 2023-02-23T13:29:16,738 copying mitos/rna/vienna.py -> build/lib/mitos/rna 2023-02-23T13:29:16,744 copying mitos/rna/forester.py -> build/lib/mitos/rna 2023-02-23T13:29:16,749 copying mitos/rna/__init__.py -> build/lib/mitos/rna 2023-02-23T13:29:16,753 creating build/lib/mitos/codon 2023-02-23T13:29:16,756 copying mitos/codon/__init__.py -> build/lib/mitos/codon 2023-02-23T13:29:16,762 creating build/lib/mitos/mergefeature 2023-02-23T13:29:16,764 copying mitos/mergefeature/__init__.py -> build/lib/mitos/mergefeature 2023-02-23T13:29:16,771 creating build/lib/mitos/update 2023-02-23T13:29:16,773 copying mitos/update/__init__.py -> build/lib/mitos/update 2023-02-23T13:29:16,780 creating build/lib/mitos/trna 2023-02-23T13:29:16,783 copying mitos/trna/trnascan.py -> build/lib/mitos/trna 2023-02-23T13:29:16,788 copying mitos/trna/__init__.py -> build/lib/mitos/trna 2023-02-23T13:29:16,792 copying mitos/trna/arwenscan.py -> build/lib/mitos/trna 2023-02-23T13:29:16,799 creating build/lib/mitos/tax 2023-02-23T13:29:16,801 copying mitos/tax/__init__.py -> build/lib/mitos/tax 2023-02-23T13:29:16,807 creating build/lib/mitos/mito 2023-02-23T13:29:16,810 copying mitos/mito/__init__.py -> build/lib/mitos/mito 2023-02-23T13:29:16,815 creating build/lib/mitos/feature 2023-02-23T13:29:16,818 copying mitos/feature/__init__.py -> build/lib/mitos/feature 2023-02-23T13:29:16,826 creating build/lib/mitos/sequence 2023-02-23T13:29:16,828 copying mitos/sequence/__init__.py -> build/lib/mitos/sequence 2023-02-23T13:29:16,834 copying mitos/sequence/degenerate.py -> build/lib/mitos/sequence 2023-02-23T13:29:16,840 creating build/lib/mitos/webserver 2023-02-23T13:29:16,842 copying mitos/webserver/__init__.py -> build/lib/mitos/webserver 2023-02-23T13:29:16,849 creating build/lib/mitos/blast 2023-02-23T13:29:16,851 copying mitos/blast/__init__.py -> build/lib/mitos/blast 2023-02-23T13:29:16,859 creating build/lib/mitos/extprog 2023-02-23T13:29:16,861 copying mitos/extprog/__init__.py -> build/lib/mitos/extprog 2023-02-23T13:29:16,868 creating build/lib/mitos/gb 2023-02-23T13:29:16,870 copying mitos/gb/unify.py -> build/lib/mitos/gb 2023-02-23T13:29:16,875 copying mitos/gb/__init__.py -> build/lib/mitos/gb 2023-02-23T13:29:16,884 creating build/lib/mitos/bedfile 2023-02-23T13:29:16,886 copying mitos/bedfile/__init__.py -> build/lib/mitos/bedfile 2023-02-23T13:29:16,892 creating build/lib/mitos/tbl 2023-02-23T13:29:16,894 copying mitos/tbl/__init__.py -> build/lib/mitos/tbl 2023-02-23T13:29:16,899 running egg_info 2023-02-23T13:29:17,029 writing mitos.egg-info/PKG-INFO 2023-02-23T13:29:17,034 writing dependency_links to mitos.egg-info/dependency_links.txt 2023-02-23T13:29:17,039 writing requirements to mitos.egg-info/requires.txt 2023-02-23T13:29:17,042 writing top-level names to mitos.egg-info/top_level.txt 2023-02-23T13:29:17,120 reading manifest file 'mitos.egg-info/SOURCES.txt' 2023-02-23T13:29:17,131 reading manifest template 'MANIFEST.in' 2023-02-23T13:29:17,137 adding license file 'LICENSE' 2023-02-23T13:29:17,151 writing manifest file 'mitos.egg-info/SOURCES.txt' 2023-02-23T13:29:17,158 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'mitos.codons' as data is deprecated, please list it in `packages`. 2023-02-23T13:29:17,158 !! 2023-02-23T13:29:17,159 ############################ 2023-02-23T13:29:17,159 # Package would be ignored # 2023-02-23T13:29:17,160 ############################ 2023-02-23T13:29:17,160 Python recognizes 'mitos.codons' as an importable package, 2023-02-23T13:29:17,160 but it is not listed in the `packages` configuration of setuptools. 2023-02-23T13:29:17,161 'mitos.codons' has been automatically added to the distribution only 2023-02-23T13:29:17,161 because it may contain data files, but this behavior is likely to change 2023-02-23T13:29:17,161 in future versions of setuptools (and therefore is considered deprecated). 2023-02-23T13:29:17,162 Please make sure that 'mitos.codons' is included as a package by using 2023-02-23T13:29:17,162 the `packages` configuration field or the proper discovery methods 2023-02-23T13:29:17,162 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-23T13:29:17,163 instead of `find_packages(...)`/`find:`). 2023-02-23T13:29:17,163 You can read more about "package discovery" and "data files" on setuptools 2023-02-23T13:29:17,164 documentation page. 2023-02-23T13:29:17,164 !! 2023-02-23T13:29:17,165 check.warn(importable) 2023-02-23T13:29:17,167 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'mitos.mitfi.parser' as data is deprecated, please list it in `packages`. 2023-02-23T13:29:17,168 !! 2023-02-23T13:29:17,169 ############################ 2023-02-23T13:29:17,169 # Package would be ignored # 2023-02-23T13:29:17,169 ############################ 2023-02-23T13:29:17,170 Python recognizes 'mitos.mitfi.parser' as an importable package, 2023-02-23T13:29:17,170 but it is not listed in the `packages` configuration of setuptools. 2023-02-23T13:29:17,171 'mitos.mitfi.parser' has been automatically added to the distribution only 2023-02-23T13:29:17,171 because it may contain data files, but this behavior is likely to change 2023-02-23T13:29:17,171 in future versions of setuptools (and therefore is considered deprecated). 2023-02-23T13:29:17,172 Please make sure that 'mitos.mitfi.parser' is included as a package by using 2023-02-23T13:29:17,172 the `packages` configuration field or the proper discovery methods 2023-02-23T13:29:17,172 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-23T13:29:17,173 instead of `find_packages(...)`/`find:`). 2023-02-23T13:29:17,173 You can read more about "package discovery" and "data files" on setuptools 2023-02-23T13:29:17,174 documentation page. 2023-02-23T13:29:17,175 !! 2023-02-23T13:29:17,175 check.warn(importable) 2023-02-23T13:29:17,178 copying mitos/plotprot.R -> build/lib/mitos 2023-02-23T13:29:17,182 copying mitos/plotrna.R -> build/lib/mitos 2023-02-23T13:29:17,189 creating build/lib/mitos/codons 2023-02-23T13:29:17,191 copying mitos/codons/gc.prt -> build/lib/mitos/codons 2023-02-23T13:29:17,197 creating build/lib/mitos/mitfi/parser 2023-02-23T13:29:17,199 copying mitos/mitfi/parser/improve_infernal_structure.jar -> build/lib/mitos/mitfi/parser 2023-02-23T13:29:17,203 copying mitos/mitfi/parser/mitfiGeneticCodes -> build/lib/mitos/mitfi/parser 2023-02-23T13:29:17,208 copying mitos/mitfi/parser/mitfi_import-1.1.jar -> build/lib/mitos/mitfi/parser 2023-02-23T13:29:17,214 copying mitos/mitfi/parser/mitfi_import.jar -> build/lib/mitos/mitfi/parser 2023-02-23T13:29:17,220 copying mitos/webserver/DB_index.txt -> build/lib/mitos/webserver 2023-02-23T13:29:17,224 copying mitos/webserver/DB_search.txt -> build/lib/mitos/webserver 2023-02-23T13:29:17,228 copying mitos/webserver/help.txt -> build/lib/mitos/webserver 2023-02-23T13:29:17,241 copying mitos/webserver/history.txt -> build/lib/mitos/webserver 2023-02-23T13:29:17,246 copying mitos/webserver/index.txt -> build/lib/mitos/webserver 2023-02-23T13:29:17,251 copying mitos/webserver/news.txt -> build/lib/mitos/webserver 2023-02-23T13:29:17,255 copying mitos/webserver/upload.txt -> build/lib/mitos/webserver 2023-02-23T13:29:17,259 copying mitos/webserver/wait.txt -> build/lib/mitos/webserver 2023-02-23T13:29:17,283 running build_scripts 2023-02-23T13:29:17,284 creating build/scripts-3.7 2023-02-23T13:29:17,286 copying and adjusting runmitos.py -> build/scripts-3.7 2023-02-23T13:29:17,292 copying and adjusting drawmitos.py -> build/scripts-3.7 2023-02-23T13:29:17,297 copying analyse.py -> build/scripts-3.7 2023-02-23T13:29:17,303 copying gcpp.py -> build/scripts-3.7 2023-02-23T13:29:17,308 copying and adjusting geneorder.py -> build/scripts-3.7 2023-02-23T13:29:17,314 copying and adjusting getfeatures.py -> build/scripts-3.7 2023-02-23T13:29:17,317 copying and adjusting getinfo.py -> build/scripts-3.7 2023-02-23T13:29:17,321 copying and adjusting refseqsplit.py -> build/scripts-3.7 2023-02-23T13:29:17,324 copying and adjusting subseq.py -> build/scripts-3.7 2023-02-23T13:29:17,328 copying and adjusting taxtree.py -> build/scripts-3.7 2023-02-23T13:29:17,333 copying mitos/plotprot.R -> build/scripts-3.7 2023-02-23T13:29:17,337 copying mitos/plotrna.R -> build/scripts-3.7 2023-02-23T13:29:17,340 changing mode of build/scripts-3.7/runmitos.py from 644 to 755 2023-02-23T13:29:17,341 changing mode of build/scripts-3.7/drawmitos.py from 644 to 755 2023-02-23T13:29:17,342 changing mode of build/scripts-3.7/analyse.py from 644 to 755 2023-02-23T13:29:17,342 changing mode of build/scripts-3.7/gcpp.py from 644 to 755 2023-02-23T13:29:17,343 changing mode of build/scripts-3.7/geneorder.py from 644 to 755 2023-02-23T13:29:17,344 changing mode of build/scripts-3.7/getfeatures.py from 644 to 755 2023-02-23T13:29:17,344 changing mode of build/scripts-3.7/getinfo.py from 644 to 755 2023-02-23T13:29:17,345 changing mode of build/scripts-3.7/refseqsplit.py from 644 to 755 2023-02-23T13:29:17,346 changing mode of build/scripts-3.7/subseq.py from 644 to 755 2023-02-23T13:29:17,347 changing mode of build/scripts-3.7/taxtree.py from 644 to 755 2023-02-23T13:29:17,408 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-02-23T13:29:17,409 setuptools.SetuptoolsDeprecationWarning, 2023-02-23T13:29:17,464 installing to build/bdist.linux-armv7l/wheel 2023-02-23T13:29:17,465 running install 2023-02-23T13:29:17,526 running install_lib 2023-02-23T13:29:17,583 creating build/bdist.linux-armv7l 2023-02-23T13:29:17,584 creating build/bdist.linux-armv7l/wheel 2023-02-23T13:29:17,589 creating build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,591 copying build/lib/mitos/ogre-geneorder.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,596 creating build/bdist.linux-armv7l/wheel/mitos/mitfi 2023-02-23T13:29:17,599 creating build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-23T13:29:17,602 copying build/lib/mitos/mitfi/parser/improve_infernal_structure.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-23T13:29:17,606 copying build/lib/mitos/mitfi/parser/mitfiGeneticCodes -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-23T13:29:17,611 copying build/lib/mitos/mitfi/parser/mitfi_import.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-23T13:29:17,617 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-23T13:29:17,622 copying build/lib/mitos/mitfi/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitfi 2023-02-23T13:29:17,628 creating build/bdist.linux-armv7l/wheel/mitos/gfffile 2023-02-23T13:29:17,630 copying build/lib/mitos/gfffile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gfffile 2023-02-23T13:29:17,635 creating build/bdist.linux-armv7l/wheel/mitos/mitofile 2023-02-23T13:29:17,637 copying build/lib/mitos/mitofile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitofile 2023-02-23T13:29:17,641 copying build/lib/mitos/mitoloc.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,646 creating build/bdist.linux-armv7l/wheel/mitos/draw 2023-02-23T13:29:17,648 copying build/lib/mitos/draw/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/draw 2023-02-23T13:29:17,652 copying build/lib/mitos/skew.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,657 copying build/lib/mitos/create_prot_fasta.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,663 creating build/bdist.linux-armv7l/wheel/mitos/rna 2023-02-23T13:29:17,665 copying build/lib/mitos/rna/vienna.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2023-02-23T13:29:17,671 copying build/lib/mitos/rna/forester.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2023-02-23T13:29:17,675 copying build/lib/mitos/rna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2023-02-23T13:29:17,678 copying build/lib/mitos/update-mitolog.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,683 copying build/lib/mitos/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,687 copying build/lib/mitos/trna-cm.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,703 creating build/bdist.linux-armv7l/wheel/mitos/codon 2023-02-23T13:29:17,705 copying build/lib/mitos/codon/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/codon 2023-02-23T13:29:17,710 creating build/bdist.linux-armv7l/wheel/mitos/mergefeature 2023-02-23T13:29:17,711 copying build/lib/mitos/mergefeature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mergefeature 2023-02-23T13:29:17,718 creating build/bdist.linux-armv7l/wheel/mitos/update 2023-02-23T13:29:17,719 copying build/lib/mitos/update/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/update 2023-02-23T13:29:17,725 creating build/bdist.linux-armv7l/wheel/mitos/trna 2023-02-23T13:29:17,727 copying build/lib/mitos/trna/trnascan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2023-02-23T13:29:17,732 copying build/lib/mitos/trna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2023-02-23T13:29:17,735 copying build/lib/mitos/trna/arwenscan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2023-02-23T13:29:17,740 copying build/lib/mitos/prepareFiles.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,743 copying build/lib/mitos/mitoch_revisions.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,751 copying build/lib/mitos/mitos-extension2.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,756 creating build/bdist.linux-armv7l/wheel/mitos/tax 2023-02-23T13:29:17,758 copying build/lib/mitos/tax/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tax 2023-02-23T13:29:17,763 creating build/bdist.linux-armv7l/wheel/mitos/mito 2023-02-23T13:29:17,764 copying build/lib/mitos/mito/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mito 2023-02-23T13:29:17,768 copying build/lib/mitos/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,772 copying build/lib/mitos/booreparser.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,776 copying build/lib/mitos/trnadist.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,782 copying build/lib/mitos/__init__.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,785 copying build/lib/mitos/CONFIG.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,790 creating build/bdist.linux-armv7l/wheel/mitos/feature 2023-02-23T13:29:17,792 copying build/lib/mitos/feature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/feature 2023-02-23T13:29:17,797 copying build/lib/mitos/inihit.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,803 creating build/bdist.linux-armv7l/wheel/mitos/sequence 2023-02-23T13:29:17,805 copying build/lib/mitos/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2023-02-23T13:29:17,810 copying build/lib/mitos/sequence/degenerate.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2023-02-23T13:29:17,814 copying build/lib/mitos/removegene.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,819 creating build/bdist.linux-armv7l/wheel/mitos/codons 2023-02-23T13:29:17,820 copying build/lib/mitos/codons/gc.prt -> build/bdist.linux-armv7l/wheel/mitos/codons 2023-02-23T13:29:17,826 creating build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T13:29:17,828 copying build/lib/mitos/webserver/upload.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T13:29:17,832 copying build/lib/mitos/webserver/help.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T13:29:17,845 copying build/lib/mitos/webserver/DB_index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T13:29:17,849 copying build/lib/mitos/webserver/index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T13:29:17,853 copying build/lib/mitos/webserver/history.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T13:29:17,857 copying build/lib/mitos/webserver/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T13:29:17,861 copying build/lib/mitos/webserver/DB_search.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T13:29:17,865 copying build/lib/mitos/webserver/wait.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T13:29:17,868 copying build/lib/mitos/webserver/news.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-23T13:29:17,872 creating build/bdist.linux-armv7l/wheel/mitos/blast 2023-02-23T13:29:17,874 copying build/lib/mitos/blast/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/blast 2023-02-23T13:29:17,882 creating build/bdist.linux-armv7l/wheel/mitos/extprog 2023-02-23T13:29:17,883 copying build/lib/mitos/extprog/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/extprog 2023-02-23T13:29:17,888 copying build/lib/mitos/mitos-extension.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,892 copying build/lib/mitos/convert_tree.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,899 creating build/bdist.linux-armv7l/wheel/mitos/gb 2023-02-23T13:29:17,900 copying build/lib/mitos/gb/unify.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2023-02-23T13:29:17,904 copying build/lib/mitos/gb/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2023-02-23T13:29:17,910 copying build/lib/mitos/update-blastdb.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-23T13:29:17,914 creating build/bdist.linux-armv7l/wheel/mitos/bedfile 2023-02-23T13:29:17,916 copying build/lib/mitos/bedfile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/bedfile 2023-02-23T13:29:17,921 creating build/bdist.linux-armv7l/wheel/mitos/tbl 2023-02-23T13:29:17,923 copying build/lib/mitos/tbl/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tbl 2023-02-23T13:29:17,927 running install_egg_info 2023-02-23T13:29:17,996 Copying mitos.egg-info to build/bdist.linux-armv7l/wheel/mitos-1.1.1-py3.7.egg-info 2023-02-23T13:29:18,016 running install_scripts 2023-02-23T13:29:18,018 creating build/bdist.linux-armv7l/wheel/mitos-1.1.1.data 2023-02-23T13:29:18,019 creating build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts 2023-02-23T13:29:18,022 copying build/scripts-3.7/subseq.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts 2023-02-23T13:29:18,026 copying build/scripts-3.7/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts 2023-02-23T13:29:18,030 copying build/scripts-3.7/runmitos.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts 2023-02-23T13:29:18,035 copying build/scripts-3.7/geneorder.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts 2023-02-23T13:29:18,040 copying build/scripts-3.7/drawmitos.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts 2023-02-23T13:29:18,043 copying build/scripts-3.7/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts 2023-02-23T13:29:18,047 copying build/scripts-3.7/refseqsplit.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts 2023-02-23T13:29:18,051 copying build/scripts-3.7/getfeatures.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts 2023-02-23T13:29:18,055 copying build/scripts-3.7/getinfo.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts 2023-02-23T13:29:18,060 copying build/scripts-3.7/analyse.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts 2023-02-23T13:29:18,066 copying build/scripts-3.7/taxtree.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts 2023-02-23T13:29:18,071 copying build/scripts-3.7/gcpp.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts 2023-02-23T13:29:18,075 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts/subseq.py to 755 2023-02-23T13:29:18,077 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts/plotprot.R to 755 2023-02-23T13:29:18,078 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts/runmitos.py to 755 2023-02-23T13:29:18,079 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts/geneorder.py to 755 2023-02-23T13:29:18,081 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts/drawmitos.py to 755 2023-02-23T13:29:18,082 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts/plotrna.R to 755 2023-02-23T13:29:18,083 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts/refseqsplit.py to 755 2023-02-23T13:29:18,085 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts/getfeatures.py to 755 2023-02-23T13:29:18,086 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts/getinfo.py to 755 2023-02-23T13:29:18,088 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts/analyse.py to 755 2023-02-23T13:29:18,089 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts/taxtree.py to 755 2023-02-23T13:29:18,090 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.1.data/scripts/gcpp.py to 755 2023-02-23T13:29:18,122 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-02-23T13:29:18,131 creating build/bdist.linux-armv7l/wheel/mitos-1.1.1.dist-info/WHEEL 2023-02-23T13:29:18,137 creating '/tmp/pip-wheel-uaeddiih/mitos-1.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-02-23T13:29:18,145 adding 'mitos/CONFIG.py' 2023-02-23T13:29:18,147 adding 'mitos/__init__.py' 2023-02-23T13:29:18,151 adding 'mitos/booreparser.py' 2023-02-23T13:29:18,160 adding 'mitos/convert_tree.py' 2023-02-23T13:29:18,165 adding 'mitos/create_prot_fasta.py' 2023-02-23T13:29:18,170 adding 'mitos/inihit.py' 2023-02-23T13:29:18,182 adding 'mitos/mitoch_revisions.py' 2023-02-23T13:29:18,186 adding 'mitos/mitoloc.py' 2023-02-23T13:29:18,192 adding 'mitos/mitos-extension.py' 2023-02-23T13:29:18,197 adding 'mitos/mitos-extension2.py' 2023-02-23T13:29:18,200 adding 'mitos/ogre-geneorder.py' 2023-02-23T13:29:18,203 adding 'mitos/plotprot.R' 2023-02-23T13:29:18,206 adding 'mitos/plotrna.R' 2023-02-23T13:29:18,209 adding 'mitos/prepareFiles.py' 2023-02-23T13:29:18,212 adding 'mitos/removegene.py' 2023-02-23T13:29:18,217 adding 'mitos/skew.py' 2023-02-23T13:29:18,254 adding 'mitos/trna-cm.py' 2023-02-23T13:29:18,265 adding 'mitos/trnadist.py' 2023-02-23T13:29:18,268 adding 'mitos/update-blastdb.py' 2023-02-23T13:29:18,271 adding 'mitos/update-mitolog.py' 2023-02-23T13:29:18,276 adding 'mitos/bedfile/__init__.py' 2023-02-23T13:29:18,288 adding 'mitos/blast/__init__.py' 2023-02-23T13:29:18,293 adding 'mitos/codon/__init__.py' 2023-02-23T13:29:18,298 adding 'mitos/codons/gc.prt' 2023-02-23T13:29:18,302 adding 'mitos/draw/__init__.py' 2023-02-23T13:29:18,307 adding 'mitos/extprog/__init__.py' 2023-02-23T13:29:18,315 adding 'mitos/feature/__init__.py' 2023-02-23T13:29:18,327 adding 'mitos/gb/__init__.py' 2023-02-23T13:29:18,331 adding 'mitos/gb/unify.py' 2023-02-23T13:29:18,335 adding 'mitos/gfffile/__init__.py' 2023-02-23T13:29:18,344 adding 'mitos/mergefeature/__init__.py' 2023-02-23T13:29:18,350 adding 'mitos/mitfi/__init__.py' 2023-02-23T13:29:18,355 adding 'mitos/mitfi/parser/improve_infernal_structure.jar' 2023-02-23T13:29:18,358 adding 'mitos/mitfi/parser/mitfiGeneticCodes' 2023-02-23T13:29:18,367 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar' 2023-02-23T13:29:18,376 adding 'mitos/mitfi/parser/mitfi_import.jar' 2023-02-23T13:29:18,381 adding 'mitos/mito/__init__.py' 2023-02-23T13:29:18,385 adding 'mitos/mitofile/__init__.py' 2023-02-23T13:29:18,388 adding 'mitos/rna/__init__.py' 2023-02-23T13:29:18,391 adding 'mitos/rna/forester.py' 2023-02-23T13:29:18,397 adding 'mitos/rna/vienna.py' 2023-02-23T13:29:18,405 adding 'mitos/sequence/__init__.py' 2023-02-23T13:29:18,408 adding 'mitos/sequence/degenerate.py' 2023-02-23T13:29:18,413 adding 'mitos/tax/__init__.py' 2023-02-23T13:29:18,417 adding 'mitos/tbl/__init__.py' 2023-02-23T13:29:18,421 adding 'mitos/trna/__init__.py' 2023-02-23T13:29:18,425 adding 'mitos/trna/arwenscan.py' 2023-02-23T13:29:18,430 adding 'mitos/trna/trnascan.py' 2023-02-23T13:29:18,436 adding 'mitos/update/__init__.py' 2023-02-23T13:29:18,440 adding 'mitos/webserver/DB_index.txt' 2023-02-23T13:29:18,442 adding 'mitos/webserver/DB_search.txt' 2023-02-23T13:29:18,446 adding 'mitos/webserver/__init__.py' 2023-02-23T13:29:18,505 adding 'mitos/webserver/help.txt' 2023-02-23T13:29:18,512 adding 'mitos/webserver/history.txt' 2023-02-23T13:29:18,515 adding 'mitos/webserver/index.txt' 2023-02-23T13:29:18,518 adding 'mitos/webserver/news.txt' 2023-02-23T13:29:18,520 adding 'mitos/webserver/upload.txt' 2023-02-23T13:29:18,523 adding 'mitos/webserver/wait.txt' 2023-02-23T13:29:18,531 adding 'mitos-1.1.1.data/scripts/analyse.py' 2023-02-23T13:29:18,534 adding 'mitos-1.1.1.data/scripts/drawmitos.py' 2023-02-23T13:29:18,538 adding 'mitos-1.1.1.data/scripts/gcpp.py' 2023-02-23T13:29:18,543 adding 'mitos-1.1.1.data/scripts/geneorder.py' 2023-02-23T13:29:18,546 adding 'mitos-1.1.1.data/scripts/getfeatures.py' 2023-02-23T13:29:18,549 adding 'mitos-1.1.1.data/scripts/getinfo.py' 2023-02-23T13:29:18,552 adding 'mitos-1.1.1.data/scripts/plotprot.R' 2023-02-23T13:29:18,555 adding 'mitos-1.1.1.data/scripts/plotrna.R' 2023-02-23T13:29:18,558 adding 'mitos-1.1.1.data/scripts/refseqsplit.py' 2023-02-23T13:29:18,564 adding 'mitos-1.1.1.data/scripts/runmitos.py' 2023-02-23T13:29:18,569 adding 'mitos-1.1.1.data/scripts/subseq.py' 2023-02-23T13:29:18,572 adding 'mitos-1.1.1.data/scripts/taxtree.py' 2023-02-23T13:29:18,577 adding 'mitos-1.1.1.dist-info/LICENSE' 2023-02-23T13:29:18,580 adding 'mitos-1.1.1.dist-info/METADATA' 2023-02-23T13:29:18,582 adding 'mitos-1.1.1.dist-info/WHEEL' 2023-02-23T13:29:18,584 adding 'mitos-1.1.1.dist-info/top_level.txt' 2023-02-23T13:29:18,586 adding 'mitos-1.1.1.dist-info/RECORD' 2023-02-23T13:29:18,602 removing build/bdist.linux-armv7l/wheel 2023-02-23T13:29:18,804 Building wheel for mitos (setup.py): finished with status 'done' 2023-02-23T13:29:18,820 Created wheel for mitos: filename=mitos-1.1.1-py3-none-any.whl size=281682 sha256=f0970e0e530a2a7759daafc81f1c79460dc85d15c1f34551d8394dce187dfe1c 2023-02-23T13:29:18,822 Stored in directory: /tmp/pip-ephem-wheel-cache-s_a49jaf/wheels/92/b0/72/aad3e02af6ba0a93b2982a4d61b3201acc2d50710807648269 2023-02-23T13:29:18,853 Successfully built mitos 2023-02-23T13:29:18,885 Removed build tracker: '/tmp/pip-build-tracker-sl4ns46j'