2023-02-24T13:38:39,810 Created temporary directory: /tmp/pip-ephem-wheel-cache-eqc5q1f_ 2023-02-24T13:38:39,815 Created temporary directory: /tmp/pip-build-tracker-oo2rgs7q 2023-02-24T13:38:39,816 Initialized build tracking at /tmp/pip-build-tracker-oo2rgs7q 2023-02-24T13:38:39,816 Created build tracker: /tmp/pip-build-tracker-oo2rgs7q 2023-02-24T13:38:39,817 Entered build tracker: /tmp/pip-build-tracker-oo2rgs7q 2023-02-24T13:38:39,818 Created temporary directory: /tmp/pip-wheel-uo4ujvvb 2023-02-24T13:38:39,828 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-24T13:38:39,834 Created temporary directory: /tmp/pip-ephem-wheel-cache-1fxa3k6y 2023-02-24T13:38:39,887 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-24T13:38:39,894 2 location(s) to search for versions of vsc-install: 2023-02-24T13:38:39,894 * https://pypi.org/simple/vsc-install/ 2023-02-24T13:38:39,894 * https://www.piwheels.org/simple/vsc-install/ 2023-02-24T13:38:39,896 Fetching project page and analyzing links: https://pypi.org/simple/vsc-install/ 2023-02-24T13:38:39,897 Getting page https://pypi.org/simple/vsc-install/ 2023-02-24T13:38:39,901 Found index url https://pypi.org/simple 2023-02-24T13:38:40,165 Fetched page https://pypi.org/simple/vsc-install/ as application/vnd.pypi.simple.v1+json 2023-02-24T13:38:40,223 Found link https://files.pythonhosted.org/packages/bf/fd/c157ef76d4cef527610493b2784ebed9697ece3546f513e732eead1c394d/vsc-install-0.9.3.tar.gz (from 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https://www.piwheels.org/simple/vsc-install/vsc_install-0.11.1-py3-none-any.whl#sha256=e5f0940f775c0881bc95986fab03986fae518a5bc7d87102c8bf0ff536d9a7c2 (from https://www.piwheels.org/simple/vsc-install/) 2023-02-24T13:38:40,654 Skipping link: No binaries permitted for vsc-install: https://www.piwheels.org/simple/vsc-install/vsc_install-0.11.0-py3-none-any.whl#sha256=26c50896baf3ec02771809a10c92a6330d9113cc972b27bf12c64d023fca8dc0 (from https://www.piwheels.org/simple/vsc-install/) 2023-02-24T13:38:40,654 Skipping link: not a file: https://www.piwheels.org/simple/vsc-install/ 2023-02-24T13:38:40,655 Skipping link: not a file: https://pypi.org/simple/vsc-install/ 2023-02-24T13:38:40,729 Given no hashes to check 1 links for project 'vsc-install': discarding no candidates 2023-02-24T13:38:40,757 Collecting vsc-install==0.18.0 2023-02-24T13:38:40,761 Created temporary directory: /tmp/pip-unpack-b_p4586f 2023-02-24T13:38:40,999 Downloading vsc-install-0.18.0.tar.gz (80 kB) 2023-02-24T13:38:41,184 Added vsc-install==0.18.0 from https://files.pythonhosted.org/packages/67/11/76facb36222c66c4a7efc1c2d1f4b8b7522ecdb03e6c2d45256b5b2b9411/vsc-install-0.18.0.tar.gz to build tracker '/tmp/pip-build-tracker-oo2rgs7q' 2023-02-24T13:38:41,187 Running setup.py (path:/tmp/pip-wheel-uo4ujvvb/vsc-install_3010ab950f574cb78146744e267ce5ed/setup.py) egg_info for package vsc-install 2023-02-24T13:38:41,188 Created temporary directory: /tmp/pip-pip-egg-info-qx454vlj 2023-02-24T13:38:41,189 Preparing metadata (setup.py): started 2023-02-24T13:38:41,191 Running command python setup.py egg_info 2023-02-24T13:38:42,880 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/log.py:46: UserWarning: None 2023-02-24T13:38:42,882 warnings.warn(Log.__doc__) # avoid DeprecationWarning to ensure warn is shown 2023-02-24T13:38:42,882 WARN: cleanup lib/vsc_install.egg-info 2023-02-24T13:38:43,325 new target {'cmdclass': {'bdist_rpm': , 'egg_info': , 'install_scripts': , 'sdist': , 'test': , 'vsc_release': }, 'command_packages': ['vsc.install.shared_setup', 'shared_setup_dist_only', 'setuptools.command', 'distutils.command'], 'download_url': '', 'package_dir': {'': 'lib'}, 'setup_requires': ['setuptools'], 'test_suite': 'test', 'url': 'https://github.com/hpcugent/vsc-install', 'dependency_links': [], 'install_requires': ['setuptools < 42.0', 'mock'], 'tests_require': ['mock', 'flake8 < 5.0.0', 'astroid <= 2.12.0-dev0', 'pyflakes < 2.5.0', 'pylint~=2.14.4', 'prospector~=1.7.7'], 'packages': dict_keys(['vsc', 'vsc.install']), 'classifiers': ['License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)'], 'license': 'LGPLv2+', 'description': "vsc-install provides shared setuptools functions and classes for python libraries developed by UGent's HPC group", 'long_description': 'Description\n===========\nvsc-install provides shared setuptools functions and classes for python libraries developed by UGent\'s HPC group\n\nCommon pitfalls\n=========\nbdist_rpm will fail if your install_requires = \'setuptools\' because it will fail to find a setuptools rpm.\n```\nexport VSC_RPM_PYTHON=1\n```\nwill make sure the `python-` prefix is added to the packages in install_requires for building RPM\'s so python-setuptools will be used.\n\nAdd tests\n=========\n\nTest are python modules in the `test` directory which have subclass of `TestCase`\nand at least one method that has a name starting with `test_`\n\nYou are advised to use\n```python\nfrom vsc.install.testing import TestCase\n```\n(instead of basic `TestCase` from `unittest`).\n\nAnd any `__main__` or `suite()` is not needed (anymore).\n\nInitialise the test directory with\n\n```bash\nmkdir -p test\necho \'\' > test/__init__.py\necho \'from vsc.install.commontest import CommonTest\' > test/00-import.py\n```\n\nWhen the tests are run, `test`, `lib` and `bin` (if relevant) are added to `sys.path`,\nso no need to do so in the tets modules.\n\nRun tests\n=========\n\n```bash\npython setup.py test\n```\n\nFilter tests with `-F` (test module names) and `-f` (test method names)\n\nSee also\n\n```bash\npython setup.py test --help\n```\n\nThe dependencies are installed automatically in the `.eggs` directory. It will first try\n`github.ugent.be` and then `github.com` to install them. The same method is used as through\nwhich the original repository was cloned (http, ssh, ...). In case you need private\ndependencies, always clone with ssh.\n\nIn case following error occurs, it means there is a test module `XYZ` that cannot be imported.\n\n```txt\nFile "setup.py", line 499, in loadTestsFromModule\n testsuites = ScanningLoader.loadTestsFromModule(self, module)\nFile "build/bdist.linux-x86_64/egg/setuptools/command/test.py", line 37, in loadTestsFromModule\nFile "/usr/lib64/python2.7/unittest/loader.py", line 100, in loadTestsFromName\n parent, obj = obj, getattr(obj, part)\nAttributeError: \'module\' object has no attribute \'XYZ\'\n```\n\nYou can try get the actual import error for fixing the issue with\n```bash\npython -c \'import sys;sys.path.insert(0, "test");import XYZ;\'\n```\n\nFix failing tests\n=================\n\n* Missing / incorrect `LICENSE`\n\n * Copy the appropirate license file under `known_licenses` in the project directory and name the file `LICENSE`\n\n* Missing `README.md`\n\n * Create a `README.md` file with at least a `Description` section\n\n* Fix license headers as described in https://github.com/hpcugent/vsc-install/blob/master/lib/vsc/install/headers.py\n\n ```\n cd \n REPO_BASE_DIR=$PWD python -m vsc.install.headers path/to/file script_or_not\n ```\n\n Fix them all at once using find\n\n ```\n find ./{lib,test} -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\'\n find ./bin -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\' 1\n ```\n\n Do not forget to check the diff.\n Modules/scripts without docstring (or magic comment \'### END OF HEADER\') (incl. test modules)\n will get correct header appended to existing one. Add a docstring (or magic comment) to resolve this.\n* Python scripts (i.e. with a python shebang and installed as scripts in setup) have to use `#!/usr/bin/env python` as shebang\n* Remove any `build_rpms_settings.sh` leftovers\n* The `TARGET` dict in `setup.py` should be minimal unless you really know what you are doing (i.e. if it is truly different from defaults)\n\n * Remove `name`, `scripts`, ...\n\n* `Exception: vsc namespace packages do not allow non-shared namespace`\n\n * Add to the `__init__.py`\n\n ```python\n """\n Allow other packages to extend this namespace, zip safe setuptools style\n """\n import pkg_resources\n pkg_resources.declare_namespace(__name__)\n ```\n\n\nbare-except\n-----------\n```python\ntry:\n # something\nexcept:\n```\nThis is bad, because this except will also catch sys.exit() or Keyboardinterupts, something you\ntypically do not want, if you catch these the program will be in a weird state and then continue on,\nwhilst the person who just pressed ctrl+c is wondering what is going on and why it is not stopping.\n\nso at the very least make this\nexcept Exception (which doesn\'t catch sys.exit and KeyboardInterupt)\nand it would be appreciated if you could actually figure out what exceptions to expect and only catch those\nand let your program crash if something you did not intend happens\nbecause it helps developers catch weird errors on their side better.\n\nif you do something like\n```python\ntry:\n open(int(somestring)).write(\'important data\')\nexcept Exception:\n pass # if somestring is not an integer, we didn\'t need to write anyway, but otherwise we do\n```\nbecause you know sometimes this string does not contain an integer, so the int() call can fail\nyou should really only catch ValueError, because this will also fail when your disk is full, or you don\'t have permissions\nor xxx other reasons, and the important data will not be written out and nobody will notice anything!\n\n\n\nif not \'a\' in somelist -> if \'a\' not in somelist\n-------------------------------------------------\n\nthis isn\'t that big of a deal, but if everyone is consistent it\'s less likely to introduce bugs when a not is added or removed where it didn\'t need to.\nAlso helps code review, not in reads better, like english.\n\n\narguments-differ\n-----------------\n\nthis will give you errors if you override a function of a superclass but don\'t use the same amount of arguments,\nusing less will surely give you errors, so the linter catches this for you now\n\nunused-argument\n-----------------\nif you have a function definition witch accepts an argument that is never used in the function body this will now give an error.\nclean up your function definition, or fix the error where you actually do need to take this argument into account\n\nunused-variable\n----------------\ndefining a variable and then not using it anymore smells bad, why did you do that?\nsometimes you do things like\n```python\nout, exit_code = run_command(something)\n```\nbut you are not interested in the out, only in the exit code,\nin this case, write\n```python\n_, exit_code = run_command(something)\n```\n\nusing _ as a variable name lets pylint and other readers know you do not intend to use that output in the first place.\n\n\nreimported\n-------------\nwhen you re import a name somewhere else,\nusually this is just an import to much, or 2 imports with the same name, pay attention.\n```python\nimport six\nfrom django import six\n```\n=>\n```python\nimport six\nfrom django import six as django_six\n```\n\nredefinition of unused name\n----------------------------\nthis usually also points to something you did not expect\n```python\nfrom vsc.accountpageclient import VscGroup\n\n\nclass VscGroup(object):\n pass\n```\n\n=> do you need the import? use import as\ndid you mean to use the same name? ...\n\nRedefined builtin\n-----------------\nuse different name, for example change\n\n```python\ndef filter(b_b):\n """Function filter"""\n return b_b\n```\n=>\n```python\ndef new_filter(b_b):\n """Function filter"""\n return b_b\n```\n\nlogging-not-lazy\n----------------\n\nDon\'t use string interpolation when logging if not needed:\n\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\' % (name, program))\n```\n=>\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\', name, program)\n```\n\n\nFix Python 3 failing tests\n==========================\n\n* We try to follow https://docs.python.org/3/howto/pyporting.html\n* some useful info can be found here as well https://portingguide.readthedocs.io/en/latest/index.html\n\nunpacking-in-except / redefine-in-handler\n-----------------------------------------\n\nMultiple exception have to be grouped in a tuple like\n\n```python\n ...\nexcept (ExceptionOne, ExceptionTwo) ...\n ...\n```\n\n(espcially when used like `except A, B:` which should be `except (A, B):`.\n\nOld raise syntax\n----------------\nPython 2’s **raise** statement was designed at a time when exceptions weren’t classes, and an exception’s _type_, _value_, and _traceback_ components were three separate objects. In Python 3, one single object includes all information about an exception.\n\n```python\nraise NameError, "Error"\n```\n=>\n```python\nraise NameError("Error")\n```\n\nor change\n```python\nraise NameError, "Error", some_traceback\n```\n=>\n```python\nraise NameError("Error")\n\ne = NameError("Error")\ne.__traceback__ = some_traceback\n```\n\nbacktick\n--------\n\n```python\nA = 2\nB = `A`\n```\n=>\n```python\nA = 2\nB = str(A)\n```\n\nOld ne operator\n---------------\n\n```python\nif 2 <> 3:\n```\n=>\n```python\nif 2 != 3:\n```\n\nOctal literal\n-------------\n\n```python\nos.chmod(foo, 0700)\n```\n=>\n```python\nos.chmod(foo, 0o700)\n```\n\nImport star module level\n------------------------\nDo not import \\*, be more specific. If it is impossible, import it in the top level (and suppress the pyflakes error F403.)\n```python\ndef coords(angle, distance):\n """Function coords"""\n from math import *\n return distance * cos(angle), distance * sin(angle)\n```\n=>\n```python\nfrom math import * # noqa: F403\ndef coords(angle, distance):\n """Function coords"""\n return distance * cos(angle), distance * sin(angle)\n```\n\nRaising string\n--------------\n```python\nraise ValueError, \'message\'\n```\n=>\n```python\nraise ValueError(\'message\')\n```\n\nIndexing exception\n------------------\n```python\nexcept IndexError as err:\n err[0]\n```\n=>\n```python\nexcept IndexError as err:\n IndexError.args[0]\n```\n\nturning off these errors\n-------------------------\n\nIf in any of these cases you think: yes, I really needed to do this,\nI\'m monkeypatching things, I\'m adding extra functionality that does indeed have an extra(default) paramenter, etc, etc\nyou can let pylint know to ignore this error in this one specific block of code\nby adding e.g. the comment `# pylint: disable=`\n\n```python\nclass Something(object):\n def dosomething(self, some, thing):\n # do something\n\nclass MyFancyThing(SomeThing):\n # pylint: disable=arguments-differ\n def dosomething(self, some, thing, fancy=None):\n # do something fancy\n```\n\nFull list with all codes is available at http://pylint-messages.wikidot.com/all-codes\n\nAuto-generated `Jenkinsfile` / `tox.ini`\n========================================\n\n`vsc-install` has support for auto-generating the `Jenkinsfile` (and accompanying `tox.ini`), via:\n\n python -m vsc.install.ci\n\nFailing check on (contents of) `Jenkinsfile` or `tox.ini`\n---------------------------------------------------------\n\nThere are dedicated tests that check whether the `Jenkinsfile` and `tox.ini` files were auto-generated\nby `vsc-install`.\n\nTo fix the tests, simply run `python -m vsc.install.ci` using the latest version of `vsc-install`\nto re-generate `Jenkinsfile` and `tox.ini`, and then commit & push the changes.\n\nIf the contents of the file that is auto-generated by the latest version of `vsc-install` is incorrect\nfor whatever reason, you can temporarily bypass the failing test by adding an a file named `Jenkinsfile.NOT_AUTOGENERATED_YET` or `tox.ini.NOT_AUTOGENERATED_YET`.\n\nThe file **must** contain the URL of a vsc-install issue, created via via https://github.com/hpcugent/vsc-install/issues/new, where the incorrectly generated file is reported.\n\nExample:\n\n echo "see https://github.com/hpcugent/vsc-install/issues/1234 for more info" > Jenkinsfile.NOT_AUTOGENERATED_YET\n\n\nRequiring JIRA issue ref in PR title\n------------------------------------\n\nTo also include a check in the `Jenkinsfile` for having a JIRA issue ref (like `[HPC-1234]`) in the pull request title,\nadd a configuration file for `python -m vsc.install.ci` named `vsc-ci.ini` like this into the repository:\n\n```ini\n[vsc-ci]\njira_issue_id_in_pr_title=1\n```\n\nRunning shellcheck\n------------------\n\nTo also run `shellcheck` in the generated `Jenkinsfile`, specify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\nrun_shellcheck=1\n```\n\nAdding additional test commands to Jenkinsfile\n----------------------------------------------\n\nIf additional custom test commands (other than `shellcheck`) need to be run by the `Jenkinsfile`,\nyou can speicfy this in `vsc-ci.ini` via `additional_test_commands`.\n\nTo add a single custom test command:\n\n```ini\n[vsc-ci]\nadditional_test_commands=./more_test.sh\n```\n\nTo add multiple test commands:\n\n```ini\n[vsc-ci]\nadditional_test_commands=\n first-test-cmd\n second-test-cmd\n third-test-cmd\n```\n\nOverriding install location of scripts\n--------------------------------------\n\nIn some repositories we specify a system-wide install location for scripts via `setup.cfg`\n(see for example the `icinga-checks` repository), which causes problems when installing `vsc-install` in the tox\nenvironment.\n\nTo override the installation prefix for scripts (only in the tox environment where the tests are run),\nspecify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\ninstall_scripts_prefix_override=1\n```\n\nRequiring that tests pass using Python 3\n----------------------------------------\n\nTo require that the test suite passes when run with Python 3, you must opt-in to generating a tox configuration file\n(tox.ini) that does not ignore a missing interpreter or failing tests, using a `vsc-ci.ini` configuration file like:\n\n```ini\n[vsc-ci]\npy3_tests_must_pass=1\n```\n\nOnly testing with Python 3\n--------------------------\n\nTo only test with Python 3 and skip running the tests with Python, you can set `py3_only` in ` vsc-ci.ini`:\n\n```ini\n[vsc-ci]\npy3_tests_must_pass=1\npy3_only=1\n```\n\nThis is useful for repositories where we start adding stuff that only works in Python 3.\n\n**Note:** make sure you also enable `py3_tests_must_pass`, since that\'s not enabled by default (yet)!\n\nUse \'pip3\' to install tox\n-------------------------\n\nOn systems that have Python 3 and `pip3` installed, it is recommended to opt-in to use `pip3 install` to install tox:\n\n```ini\n[vsc-ci]\npip3_install_tox=1\n```\n\nAvoid running ``pip install`` in repo checkout\n----------------------------------------------\n\nFor some repositories, running ``pip install`` to install ``tox`` from the checked out repository is problematic,\nbecause of the ``setup.cfg`` containing things that should not be picked up by ``pip``.\n\nFor those repositories, you can specify that the installation commands in the ``Jenkinsfile`` should be\nrun from ``$HOME``, via:\n\n```ini\n[vsc-ci]\nhome_install=1\n```\n\nLeveraging system (Python) packages\n-----------------------------------\n\nIf a repository requires Python packages as dependencies that are installed as OS packages (for example, ``pyslurm``),\ntox must be configured to inherit these packages in the test environment. This can be enabled via:\n\n```ini\n[vsc-ci]\ninherit_site_packages=1\n```\n\nPre-installing dependencies before running tests\n------------------------------------------------\n\nAlthough ``vsc-install`` will automatically install all dependencies listed in ``setup.py`` prior to running the\ntests, there are cases where this doesn\'t work out as expected.\nSome Python packages only support being installed with ``pip install`` (for example because they use a namespace\nthat is spread across multiple different Python packages, like ``fs`` and ``fs.sshfs``).\n\nYou can specify Python packages that should be installed (with ``pip install``) before running the tests via\n``pip_install_test_deps`` in ``vsc-ci.ini``:\n\n```ini\n[vsc-ci]\npip_install_test_deps=\n foo\n bar<1.0\n```\n\nThis results in corresponding ``pip install`` commands being added to the ``commands_pre`` section in ``tox.ini``:\n\n```ini\n[testenv]\ncommands_pre =\n pip install \'foo\'\n pip install \'bar<1.0\'\n pip install \'setuptools<42.0\'\n python -m easy_install -U vsc-install\n```\n', 'long_description_content_type': 'text/markdown', 'scripts': ['bin/python-noenv.sh', 'bin/python-stripped-env'], 'namespace_packages': ['vsc'], 'version': '0.18.0', 'author': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'author_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'maintainer': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'maintainer_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'name': 'vsc-install'} 2023-02-24T13:38:43,326 running egg_info 2023-02-24T13:38:43,333 creating /tmp/pip-pip-egg-info-qx454vlj/vsc_install.egg-info 2023-02-24T13:38:43,399 writing manifest file '/tmp/pip-pip-egg-info-qx454vlj/vsc_install.egg-info/SOURCES.txt' 2023-02-24T13:38:43,621 writing manifest file '/tmp/pip-pip-egg-info-qx454vlj/vsc_install.egg-info/SOURCES.txt' 2023-02-24T13:38:43,623 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2023-02-24T13:38:43,624 % (opt, underscore_opt) 2023-02-24T13:38:43,625 /usr/local/lib/python3.7/dist-packages/setuptools/__init__.py:85: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. 2023-02-24T13:38:43,625 dist.fetch_build_eggs(dist.setup_requires) 2023-02-24T13:38:43,625 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:287: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated, consider using implicit namespaces instead (PEP 420). See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 2023-02-24T13:38:43,626 warnings.warn(msg, SetuptoolsDeprecationWarning) 2023-02-24T13:38:43,776 Preparing metadata (setup.py): finished with status 'done' 2023-02-24T13:38:43,792 Source in /tmp/pip-wheel-uo4ujvvb/vsc-install_3010ab950f574cb78146744e267ce5ed has version 0.18.0, which satisfies requirement vsc-install==0.18.0 from https://files.pythonhosted.org/packages/67/11/76facb36222c66c4a7efc1c2d1f4b8b7522ecdb03e6c2d45256b5b2b9411/vsc-install-0.18.0.tar.gz 2023-02-24T13:38:43,794 Removed vsc-install==0.18.0 from https://files.pythonhosted.org/packages/67/11/76facb36222c66c4a7efc1c2d1f4b8b7522ecdb03e6c2d45256b5b2b9411/vsc-install-0.18.0.tar.gz from build tracker '/tmp/pip-build-tracker-oo2rgs7q' 2023-02-24T13:38:43,809 Created temporary directory: /tmp/pip-unpack-nnefxor4 2023-02-24T13:38:43,811 Building wheels for collected packages: vsc-install 2023-02-24T13:38:43,820 Created temporary directory: /tmp/pip-wheel-k1wwi_ey 2023-02-24T13:38:43,821 Building wheel for vsc-install (setup.py): started 2023-02-24T13:38:43,823 Destination directory: /tmp/pip-wheel-k1wwi_ey 2023-02-24T13:38:43,823 Running command python setup.py bdist_wheel 2023-02-24T13:38:45,440 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/log.py:46: UserWarning: None 2023-02-24T13:38:45,442 warnings.warn(Log.__doc__) # avoid DeprecationWarning to ensure warn is shown 2023-02-24T13:38:45,490 new target {'cmdclass': {'bdist_rpm': , 'egg_info': , 'install_scripts': , 'sdist': , 'test': , 'vsc_release': }, 'command_packages': ['vsc.install.shared_setup', 'shared_setup_dist_only', 'setuptools.command', 'distutils.command'], 'download_url': '', 'package_dir': {'': 'lib'}, 'setup_requires': ['setuptools'], 'test_suite': 'test', 'url': 'https://github.com/hpcugent/vsc-install', 'dependency_links': [], 'install_requires': ['setuptools < 42.0', 'mock'], 'tests_require': ['mock', 'flake8 < 5.0.0', 'astroid <= 2.12.0-dev0', 'pyflakes < 2.5.0', 'pylint~=2.14.4', 'prospector~=1.7.7'], 'packages': dict_keys(['vsc', 'vsc.install']), 'classifiers': ['License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)'], 'license': 'LGPLv2+', 'description': "vsc-install provides shared setuptools functions and classes for python libraries developed by UGent's HPC group", 'long_description': 'Description\n===========\nvsc-install provides shared setuptools functions and classes for python libraries developed by UGent\'s HPC group\n\nCommon pitfalls\n=========\nbdist_rpm will fail if your install_requires = \'setuptools\' because it will fail to find a setuptools rpm.\n```\nexport VSC_RPM_PYTHON=1\n```\nwill make sure the `python-` prefix is added to the packages in install_requires for building RPM\'s so python-setuptools will be used.\n\nAdd tests\n=========\n\nTest are python modules in the `test` directory which have subclass of `TestCase`\nand at least one method that has a name starting with `test_`\n\nYou are advised to use\n```python\nfrom vsc.install.testing import TestCase\n```\n(instead of basic `TestCase` from `unittest`).\n\nAnd any `__main__` or `suite()` is not needed (anymore).\n\nInitialise the test directory with\n\n```bash\nmkdir -p test\necho \'\' > test/__init__.py\necho \'from vsc.install.commontest import CommonTest\' > test/00-import.py\n```\n\nWhen the tests are run, `test`, `lib` and `bin` (if relevant) are added to `sys.path`,\nso no need to do so in the tets modules.\n\nRun tests\n=========\n\n```bash\npython setup.py test\n```\n\nFilter tests with `-F` (test module names) and `-f` (test method names)\n\nSee also\n\n```bash\npython setup.py test --help\n```\n\nThe dependencies are installed automatically in the `.eggs` directory. It will first try\n`github.ugent.be` and then `github.com` to install them. The same method is used as through\nwhich the original repository was cloned (http, ssh, ...). In case you need private\ndependencies, always clone with ssh.\n\nIn case following error occurs, it means there is a test module `XYZ` that cannot be imported.\n\n```txt\nFile "setup.py", line 499, in loadTestsFromModule\n testsuites = ScanningLoader.loadTestsFromModule(self, module)\nFile "build/bdist.linux-x86_64/egg/setuptools/command/test.py", line 37, in loadTestsFromModule\nFile "/usr/lib64/python2.7/unittest/loader.py", line 100, in loadTestsFromName\n parent, obj = obj, getattr(obj, part)\nAttributeError: \'module\' object has no attribute \'XYZ\'\n```\n\nYou can try get the actual import error for fixing the issue with\n```bash\npython -c \'import sys;sys.path.insert(0, "test");import XYZ;\'\n```\n\nFix failing tests\n=================\n\n* Missing / incorrect `LICENSE`\n\n * Copy the appropirate license file under `known_licenses` in the project directory and name the file `LICENSE`\n\n* Missing `README.md`\n\n * Create a `README.md` file with at least a `Description` section\n\n* Fix license headers as described in https://github.com/hpcugent/vsc-install/blob/master/lib/vsc/install/headers.py\n\n ```\n cd \n REPO_BASE_DIR=$PWD python -m vsc.install.headers path/to/file script_or_not\n ```\n\n Fix them all at once using find\n\n ```\n find ./{lib,test} -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\'\n find ./bin -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\' 1\n ```\n\n Do not forget to check the diff.\n Modules/scripts without docstring (or magic comment \'### END OF HEADER\') (incl. test modules)\n will get correct header appended to existing one. Add a docstring (or magic comment) to resolve this.\n* Python scripts (i.e. with a python shebang and installed as scripts in setup) have to use `#!/usr/bin/env python` as shebang\n* Remove any `build_rpms_settings.sh` leftovers\n* The `TARGET` dict in `setup.py` should be minimal unless you really know what you are doing (i.e. if it is truly different from defaults)\n\n * Remove `name`, `scripts`, ...\n\n* `Exception: vsc namespace packages do not allow non-shared namespace`\n\n * Add to the `__init__.py`\n\n ```python\n """\n Allow other packages to extend this namespace, zip safe setuptools style\n """\n import pkg_resources\n pkg_resources.declare_namespace(__name__)\n ```\n\n\nbare-except\n-----------\n```python\ntry:\n # something\nexcept:\n```\nThis is bad, because this except will also catch sys.exit() or Keyboardinterupts, something you\ntypically do not want, if you catch these the program will be in a weird state and then continue on,\nwhilst the person who just pressed ctrl+c is wondering what is going on and why it is not stopping.\n\nso at the very least make this\nexcept Exception (which doesn\'t catch sys.exit and KeyboardInterupt)\nand it would be appreciated if you could actually figure out what exceptions to expect and only catch those\nand let your program crash if something you did not intend happens\nbecause it helps developers catch weird errors on their side better.\n\nif you do something like\n```python\ntry:\n open(int(somestring)).write(\'important data\')\nexcept Exception:\n pass # if somestring is not an integer, we didn\'t need to write anyway, but otherwise we do\n```\nbecause you know sometimes this string does not contain an integer, so the int() call can fail\nyou should really only catch ValueError, because this will also fail when your disk is full, or you don\'t have permissions\nor xxx other reasons, and the important data will not be written out and nobody will notice anything!\n\n\n\nif not \'a\' in somelist -> if \'a\' not in somelist\n-------------------------------------------------\n\nthis isn\'t that big of a deal, but if everyone is consistent it\'s less likely to introduce bugs when a not is added or removed where it didn\'t need to.\nAlso helps code review, not in reads better, like english.\n\n\narguments-differ\n-----------------\n\nthis will give you errors if you override a function of a superclass but don\'t use the same amount of arguments,\nusing less will surely give you errors, so the linter catches this for you now\n\nunused-argument\n-----------------\nif you have a function definition witch accepts an argument that is never used in the function body this will now give an error.\nclean up your function definition, or fix the error where you actually do need to take this argument into account\n\nunused-variable\n----------------\ndefining a variable and then not using it anymore smells bad, why did you do that?\nsometimes you do things like\n```python\nout, exit_code = run_command(something)\n```\nbut you are not interested in the out, only in the exit code,\nin this case, write\n```python\n_, exit_code = run_command(something)\n```\n\nusing _ as a variable name lets pylint and other readers know you do not intend to use that output in the first place.\n\n\nreimported\n-------------\nwhen you re import a name somewhere else,\nusually this is just an import to much, or 2 imports with the same name, pay attention.\n```python\nimport six\nfrom django import six\n```\n=>\n```python\nimport six\nfrom django import six as django_six\n```\n\nredefinition of unused name\n----------------------------\nthis usually also points to something you did not expect\n```python\nfrom vsc.accountpageclient import VscGroup\n\n\nclass VscGroup(object):\n pass\n```\n\n=> do you need the import? use import as\ndid you mean to use the same name? ...\n\nRedefined builtin\n-----------------\nuse different name, for example change\n\n```python\ndef filter(b_b):\n """Function filter"""\n return b_b\n```\n=>\n```python\ndef new_filter(b_b):\n """Function filter"""\n return b_b\n```\n\nlogging-not-lazy\n----------------\n\nDon\'t use string interpolation when logging if not needed:\n\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\' % (name, program))\n```\n=>\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\', name, program)\n```\n\n\nFix Python 3 failing tests\n==========================\n\n* We try to follow https://docs.python.org/3/howto/pyporting.html\n* some useful info can be found here as well https://portingguide.readthedocs.io/en/latest/index.html\n\nunpacking-in-except / redefine-in-handler\n-----------------------------------------\n\nMultiple exception have to be grouped in a tuple like\n\n```python\n ...\nexcept (ExceptionOne, ExceptionTwo) ...\n ...\n```\n\n(espcially when used like `except A, B:` which should be `except (A, B):`.\n\nOld raise syntax\n----------------\nPython 2’s **raise** statement was designed at a time when exceptions weren’t classes, and an exception’s _type_, _value_, and _traceback_ components were three separate objects. In Python 3, one single object includes all information about an exception.\n\n```python\nraise NameError, "Error"\n```\n=>\n```python\nraise NameError("Error")\n```\n\nor change\n```python\nraise NameError, "Error", some_traceback\n```\n=>\n```python\nraise NameError("Error")\n\ne = NameError("Error")\ne.__traceback__ = some_traceback\n```\n\nbacktick\n--------\n\n```python\nA = 2\nB = `A`\n```\n=>\n```python\nA = 2\nB = str(A)\n```\n\nOld ne operator\n---------------\n\n```python\nif 2 <> 3:\n```\n=>\n```python\nif 2 != 3:\n```\n\nOctal literal\n-------------\n\n```python\nos.chmod(foo, 0700)\n```\n=>\n```python\nos.chmod(foo, 0o700)\n```\n\nImport star module level\n------------------------\nDo not import \\*, be more specific. If it is impossible, import it in the top level (and suppress the pyflakes error F403.)\n```python\ndef coords(angle, distance):\n """Function coords"""\n from math import *\n return distance * cos(angle), distance * sin(angle)\n```\n=>\n```python\nfrom math import * # noqa: F403\ndef coords(angle, distance):\n """Function coords"""\n return distance * cos(angle), distance * sin(angle)\n```\n\nRaising string\n--------------\n```python\nraise ValueError, \'message\'\n```\n=>\n```python\nraise ValueError(\'message\')\n```\n\nIndexing exception\n------------------\n```python\nexcept IndexError as err:\n err[0]\n```\n=>\n```python\nexcept IndexError as err:\n IndexError.args[0]\n```\n\nturning off these errors\n-------------------------\n\nIf in any of these cases you think: yes, I really needed to do this,\nI\'m monkeypatching things, I\'m adding extra functionality that does indeed have an extra(default) paramenter, etc, etc\nyou can let pylint know to ignore this error in this one specific block of code\nby adding e.g. the comment `# pylint: disable=`\n\n```python\nclass Something(object):\n def dosomething(self, some, thing):\n # do something\n\nclass MyFancyThing(SomeThing):\n # pylint: disable=arguments-differ\n def dosomething(self, some, thing, fancy=None):\n # do something fancy\n```\n\nFull list with all codes is available at http://pylint-messages.wikidot.com/all-codes\n\nAuto-generated `Jenkinsfile` / `tox.ini`\n========================================\n\n`vsc-install` has support for auto-generating the `Jenkinsfile` (and accompanying `tox.ini`), via:\n\n python -m vsc.install.ci\n\nFailing check on (contents of) `Jenkinsfile` or `tox.ini`\n---------------------------------------------------------\n\nThere are dedicated tests that check whether the `Jenkinsfile` and `tox.ini` files were auto-generated\nby `vsc-install`.\n\nTo fix the tests, simply run `python -m vsc.install.ci` using the latest version of `vsc-install`\nto re-generate `Jenkinsfile` and `tox.ini`, and then commit & push the changes.\n\nIf the contents of the file that is auto-generated by the latest version of `vsc-install` is incorrect\nfor whatever reason, you can temporarily bypass the failing test by adding an a file named `Jenkinsfile.NOT_AUTOGENERATED_YET` or `tox.ini.NOT_AUTOGENERATED_YET`.\n\nThe file **must** contain the URL of a vsc-install issue, created via via https://github.com/hpcugent/vsc-install/issues/new, where the incorrectly generated file is reported.\n\nExample:\n\n echo "see https://github.com/hpcugent/vsc-install/issues/1234 for more info" > Jenkinsfile.NOT_AUTOGENERATED_YET\n\n\nRequiring JIRA issue ref in PR title\n------------------------------------\n\nTo also include a check in the `Jenkinsfile` for having a JIRA issue ref (like `[HPC-1234]`) in the pull request title,\nadd a configuration file for `python -m vsc.install.ci` named `vsc-ci.ini` like this into the repository:\n\n```ini\n[vsc-ci]\njira_issue_id_in_pr_title=1\n```\n\nRunning shellcheck\n------------------\n\nTo also run `shellcheck` in the generated `Jenkinsfile`, specify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\nrun_shellcheck=1\n```\n\nAdding additional test commands to Jenkinsfile\n----------------------------------------------\n\nIf additional custom test commands (other than `shellcheck`) need to be run by the `Jenkinsfile`,\nyou can speicfy this in `vsc-ci.ini` via `additional_test_commands`.\n\nTo add a single custom test command:\n\n```ini\n[vsc-ci]\nadditional_test_commands=./more_test.sh\n```\n\nTo add multiple test commands:\n\n```ini\n[vsc-ci]\nadditional_test_commands=\n first-test-cmd\n second-test-cmd\n third-test-cmd\n```\n\nOverriding install location of scripts\n--------------------------------------\n\nIn some repositories we specify a system-wide install location for scripts via `setup.cfg`\n(see for example the `icinga-checks` repository), which causes problems when installing `vsc-install` in the tox\nenvironment.\n\nTo override the installation prefix for scripts (only in the tox environment where the tests are run),\nspecify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\ninstall_scripts_prefix_override=1\n```\n\nRequiring that tests pass using Python 3\n----------------------------------------\n\nTo require that the test suite passes when run with Python 3, you must opt-in to generating a tox configuration file\n(tox.ini) that does not ignore a missing interpreter or failing tests, using a `vsc-ci.ini` configuration file like:\n\n```ini\n[vsc-ci]\npy3_tests_must_pass=1\n```\n\nOnly testing with Python 3\n--------------------------\n\nTo only test with Python 3 and skip running the tests with Python, you can set `py3_only` in ` vsc-ci.ini`:\n\n```ini\n[vsc-ci]\npy3_tests_must_pass=1\npy3_only=1\n```\n\nThis is useful for repositories where we start adding stuff that only works in Python 3.\n\n**Note:** make sure you also enable `py3_tests_must_pass`, since that\'s not enabled by default (yet)!\n\nUse \'pip3\' to install tox\n-------------------------\n\nOn systems that have Python 3 and `pip3` installed, it is recommended to opt-in to use `pip3 install` to install tox:\n\n```ini\n[vsc-ci]\npip3_install_tox=1\n```\n\nAvoid running ``pip install`` in repo checkout\n----------------------------------------------\n\nFor some repositories, running ``pip install`` to install ``tox`` from the checked out repository is problematic,\nbecause of the ``setup.cfg`` containing things that should not be picked up by ``pip``.\n\nFor those repositories, you can specify that the installation commands in the ``Jenkinsfile`` should be\nrun from ``$HOME``, via:\n\n```ini\n[vsc-ci]\nhome_install=1\n```\n\nLeveraging system (Python) packages\n-----------------------------------\n\nIf a repository requires Python packages as dependencies that are installed as OS packages (for example, ``pyslurm``),\ntox must be configured to inherit these packages in the test environment. This can be enabled via:\n\n```ini\n[vsc-ci]\ninherit_site_packages=1\n```\n\nPre-installing dependencies before running tests\n------------------------------------------------\n\nAlthough ``vsc-install`` will automatically install all dependencies listed in ``setup.py`` prior to running the\ntests, there are cases where this doesn\'t work out as expected.\nSome Python packages only support being installed with ``pip install`` (for example because they use a namespace\nthat is spread across multiple different Python packages, like ``fs`` and ``fs.sshfs``).\n\nYou can specify Python packages that should be installed (with ``pip install``) before running the tests via\n``pip_install_test_deps`` in ``vsc-ci.ini``:\n\n```ini\n[vsc-ci]\npip_install_test_deps=\n foo\n bar<1.0\n```\n\nThis results in corresponding ``pip install`` commands being added to the ``commands_pre`` section in ``tox.ini``:\n\n```ini\n[testenv]\ncommands_pre =\n pip install \'foo\'\n pip install \'bar<1.0\'\n pip install \'setuptools<42.0\'\n python -m easy_install -U vsc-install\n```\n', 'long_description_content_type': 'text/markdown', 'scripts': ['bin/python-noenv.sh', 'bin/python-stripped-env'], 'namespace_packages': ['vsc'], 'version': '0.18.0', 'author': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'author_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'maintainer': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'maintainer_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'name': 'vsc-install'} 2023-02-24T13:38:45,582 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2023-02-24T13:38:45,583 % (opt, underscore_opt) 2023-02-24T13:38:45,607 /usr/local/lib/python3.7/dist-packages/setuptools/__init__.py:85: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. 2023-02-24T13:38:45,607 dist.fetch_build_eggs(dist.setup_requires) 2023-02-24T13:38:45,866 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:287: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated, consider using implicit namespaces instead (PEP 420). See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 2023-02-24T13:38:45,867 warnings.warn(msg, SetuptoolsDeprecationWarning) 2023-02-24T13:38:45,979 running bdist_wheel 2023-02-24T13:38:46,134 running build 2023-02-24T13:38:46,135 running build_py 2023-02-24T13:38:46,187 creating build 2023-02-24T13:38:46,188 creating build/lib 2023-02-24T13:38:46,189 creating build/lib/vsc 2023-02-24T13:38:46,191 copying lib/vsc/__init__.py -> build/lib/vsc 2023-02-24T13:38:46,196 creating build/lib/vsc/install 2023-02-24T13:38:46,198 copying lib/vsc/install/commontest.py -> build/lib/vsc/install 2023-02-24T13:38:46,203 copying lib/vsc/install/methodinspector.py -> build/lib/vsc/install 2023-02-24T13:38:46,207 copying lib/vsc/install/shared_setup.py -> build/lib/vsc/install 2023-02-24T13:38:46,215 copying lib/vsc/install/__init__.py -> build/lib/vsc/install 2023-02-24T13:38:46,218 copying lib/vsc/install/headers.py -> build/lib/vsc/install 2023-02-24T13:38:46,223 copying lib/vsc/install/ci.py -> build/lib/vsc/install 2023-02-24T13:38:46,228 copying lib/vsc/install/testing.py -> build/lib/vsc/install 2023-02-24T13:38:46,235 running build_scripts 2023-02-24T13:38:46,236 creating build/scripts-3.7 2023-02-24T13:38:46,239 copying bin/python-noenv.sh -> build/scripts-3.7 2023-02-24T13:38:46,243 copying bin/python-stripped-env -> build/scripts-3.7 2023-02-24T13:38:46,246 changing mode of build/scripts-3.7/python-noenv.sh from 644 to 755 2023-02-24T13:38:46,304 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-02-24T13:38:46,305 setuptools.SetuptoolsDeprecationWarning, 2023-02-24T13:38:46,305 running install 2023-02-24T13:38:46,366 running install_lib 2023-02-24T13:38:46,422 WARN: Skipping installation of build/bdist.linux-armv7l/wheel/vsc/__init__.py (namespace package) 2023-02-24T13:38:46,467 running install_egg_info 2023-02-24T13:38:46,527 running egg_info 2023-02-24T13:38:46,528 creating lib/vsc_install.egg-info 2023-02-24T13:38:46,593 writing manifest file 'lib/vsc_install.egg-info/SOURCES.txt' 2023-02-24T13:38:46,659 writing manifest file 'lib/vsc_install.egg-info/SOURCES.txt' 2023-02-24T13:38:46,662 Copying lib/vsc_install.egg-info to build/bdist.linux-armv7l/wheel/vsc_install-0.18.0-py3.7.egg-info 2023-02-24T13:38:46,692 running install_scripts 2023-02-24T13:38:46,695 creating build/bdist.linux-armv7l/wheel/vsc_install-0.18.0.data 2023-02-24T13:38:46,695 creating build/bdist.linux-armv7l/wheel/vsc_install-0.18.0.data/scripts 2023-02-24T13:38:46,698 copying build/scripts-3.7/python-noenv.sh -> build/bdist.linux-armv7l/wheel/vsc_install-0.18.0.data/scripts 2023-02-24T13:38:46,702 copying build/scripts-3.7/python-stripped-env -> build/bdist.linux-armv7l/wheel/vsc_install-0.18.0.data/scripts 2023-02-24T13:38:46,705 changing mode of build/bdist.linux-armv7l/wheel/vsc_install-0.18.0.data/scripts/python-noenv.sh to 755 2023-02-24T13:38:46,705 changing mode of build/bdist.linux-armv7l/wheel/vsc_install-0.18.0.data/scripts/python-stripped-env to 755 2023-02-24T13:38:47,024 Building wheel for vsc-install (setup.py): finished with status 'done' 2023-02-24T13:38:47,033 Created wheel for vsc-install: filename=vsc_install-0.18.0-py3-none-any.whl size=60627 sha256=ef9bcc4992666e9f9d40b18fa9c22c3d9eb9ae34398df431d8d6979819e3eeff 2023-02-24T13:38:47,035 Stored in directory: /tmp/pip-ephem-wheel-cache-1fxa3k6y/wheels/73/db/02/00b38e087238a0fbad39d9870b375f3fd9ba437de2c4c18d7c 2023-02-24T13:38:47,067 Successfully built vsc-install 2023-02-24T13:38:47,078 Removed build tracker: '/tmp/pip-build-tracker-oo2rgs7q'