2023-02-25T13:16:20,382 Created temporary directory: /tmp/pip-ephem-wheel-cache-v7bk9jw0 2023-02-25T13:16:20,388 Created temporary directory: /tmp/pip-build-tracker-zd3ravjt 2023-02-25T13:16:20,389 Initialized build tracking at /tmp/pip-build-tracker-zd3ravjt 2023-02-25T13:16:20,389 Created build tracker: /tmp/pip-build-tracker-zd3ravjt 2023-02-25T13:16:20,390 Entered build tracker: /tmp/pip-build-tracker-zd3ravjt 2023-02-25T13:16:20,391 Created temporary directory: /tmp/pip-wheel-84gw9pn6 2023-02-25T13:16:20,401 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-25T13:16:20,407 Created temporary directory: /tmp/pip-ephem-wheel-cache-mczipmrw 2023-02-25T13:16:20,460 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-25T13:16:20,467 2 location(s) to search for versions of mitos: 2023-02-25T13:16:20,467 * https://pypi.org/simple/mitos/ 2023-02-25T13:16:20,467 * https://www.piwheels.org/simple/mitos/ 2023-02-25T13:16:20,468 Fetching project page and analyzing links: https://pypi.org/simple/mitos/ 2023-02-25T13:16:20,469 Getting page https://pypi.org/simple/mitos/ 2023-02-25T13:16:20,473 Found index url https://pypi.org/simple 2023-02-25T13:16:20,661 Fetched page https://pypi.org/simple/mitos/ as application/vnd.pypi.simple.v1+json 2023-02-25T13:16:20,673 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/ae/2d/5f1e66a046e59cf6088f44d4a02cae66d498e226365af5fd42e2d660a814/mitos-1.0-py2-none-any.whl (from https://pypi.org/simple/mitos/) 2023-02-25T13:16:20,674 Found link https://files.pythonhosted.org/packages/c5/6e/e1aae4079b0ebbce64897f54f5cd4a3953a0cb741026d16e14e7ae272a48/mitos-1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0 2023-02-25T13:16:20,675 Found link https://files.pythonhosted.org/packages/d7/19/816780e09ecc6a783f146d80bcde73eb7940d074f4feea137ec954bfd437/mitos-1.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.1 2023-02-25T13:16:20,675 Found link https://files.pythonhosted.org/packages/38/c7/3dd90bcf0d61c69226ef1632baa3ad0e96d798de36053b4b56ed7660dfdb/mitos-1.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.2 2023-02-25T13:16:20,676 Found link https://files.pythonhosted.org/packages/e2/d4/864af2605cc1f45cc78cfed740bbdfba1da59ea9a42c24ef5077c9218501/mitos-1.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.3 2023-02-25T13:16:20,677 Found link https://files.pythonhosted.org/packages/8d/32/1aa5eb88f964c3cf5441622648cc4ae30f115db32bdd5dc5bf194a3c112c/mitos-1.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.4 2023-02-25T13:16:20,678 Found link https://files.pythonhosted.org/packages/ff/49/f4c711126604aa86abeeda44378786a0903bc53970acf4afa5feb68f72b8/mitos-1.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.5 2023-02-25T13:16:20,678 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/c3/cd/96e0e1ad1551b8fff56ab89e61231809494dec3ee80f51117b4f5d432452/mitos-1.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2023-02-25T13:16:20,679 Found link https://files.pythonhosted.org/packages/ce/33/46fd40fd9f4c11f5bf296c2c092f59e36dee233d71a0f032b34c2a64c7ba/mitos-1.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.0 2023-02-25T13:16:20,680 Found link https://files.pythonhosted.org/packages/b3/a0/5268d8fec841240195c19e704b552a8b3060768c6710c67c67350ea60f13/mitos-1.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.1 2023-02-25T13:16:20,680 Found link https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.1 2023-02-25T13:16:20,681 Found link https://files.pythonhosted.org/packages/d7/53/5d215fe8689055dd329a27202f9dc7f66e23548f3d2ad3fa55d98dc56988/mitos-2.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.2 2023-02-25T13:16:20,682 Found link https://files.pythonhosted.org/packages/cd/97/a8bf95d5e26b51071d9f342dc475891425b223b6add347a6dbf9412937f1/mitos-2.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.3 2023-02-25T13:16:20,682 Found link https://files.pythonhosted.org/packages/39/9f/6cdac19a8d50915e2e5285b447077459af9c6524f980ded6657dc205593d/mitos-2.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.4 2023-02-25T13:16:20,683 Found link https://files.pythonhosted.org/packages/d0/16/8040a37887377e3992b0874ab441af54e16030fd23eb844bbf5293597c99/mitos-2.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.5 2023-02-25T13:16:20,684 Found link https://files.pythonhosted.org/packages/40/ef/5a93579c1ebc63ca8fe71cfe541bca389a0f9410b9a2c1ceff148f83af79/mitos-2.0.6.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.6 2023-02-25T13:16:20,689 Found link https://files.pythonhosted.org/packages/1f/a2/32eb96227aae3a719794cc922d839b8c38ee5c315087bf095792c48f996d/mitos-2.0.7.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.7 2023-02-25T13:16:20,690 Found link https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.8 2023-02-25T13:16:20,690 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/9d/93/5f2a1097bfa507acbf7dd6ac677f6df14df61692cccb42d28c34edb7ca5b/mitos-2.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2023-02-25T13:16:20,691 Found link https://files.pythonhosted.org/packages/f8/f4/2950dea175f0bda896b88ac2ac13007a1d007252a583ddd328b176fb54a5/mitos-2.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.0 2023-02-25T13:16:20,691 Found link https://files.pythonhosted.org/packages/57/78/2fde036a6c767aa5fb8c1102526af749ee13ad426b295289265c548384f9/mitos-2.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.1 2023-02-25T13:16:20,692 Found link https://files.pythonhosted.org/packages/74/63/f90f359df86c01e68f5c678eef30d929b9311e7bb80f16071a1532515a0a/mitos-2.1.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.2 2023-02-25T13:16:20,693 Found link https://files.pythonhosted.org/packages/d6/1f/b6dbc4704555e91e3efa3184fc90b04e901dc6e787c37091d445dd50bd4b/mitos-2.1.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.3 2023-02-25T13:16:20,694 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitos/ 2023-02-25T13:16:20,694 Getting page https://www.piwheels.org/simple/mitos/ 2023-02-25T13:16:20,697 Found index url https://www.piwheels.org/simple 2023-02-25T13:16:21,092 Fetched page https://www.piwheels.org/simple/mitos/ as text/html 2023-02-25T13:16:21,107 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.2-py3-none-any.whl#sha256=c98234624cb7939861858030fbac10b88073159ea24b334b42e1cfd70254088d (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,107 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.1-py3-none-any.whl#sha256=698670abccda0918af0b490888cb195f86172e217766c9672bfedae33666ac82 (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,108 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.0-py3-none-any.whl#sha256=d4b006045b98620155cbed38de6ecf0d0ffb030cebc4d6e6e947cb015b8ce746 (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,108 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.8-py3-none-any.whl#sha256=5e88aa49c5bba746d511e0e619295e3c59916c71ba94246f984e44dcfef6a06c (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,109 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.7-py3-none-any.whl#sha256=97e98856e946735f44b3df83d67645e0dac8b411edb7774df74c00a44832e1d6 (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,110 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.6-py3-none-any.whl#sha256=8fba2e7cf9c22c6a728a1f8141764a77a6a4a27d7f7e50106b6e43832857b149 (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,110 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.5-py3-none-any.whl#sha256=ed4998969ebae7bf1688b78cdac8f19ca359f123ea79c2acd2654dd454a53f22 (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,111 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.4-py3-none-any.whl#sha256=71ac10ffdc0a236d68e4fd82a700ae35a92f0b23a09242c8b99485ccbadb10cc (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,111 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.3-py3-none-any.whl#sha256=4da7d3530901e0732adc63ab4afa0c5d9a40558469b2ccee71ea4fbad466603b (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,112 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.2-py3-none-any.whl#sha256=0cd775b72e2dca4acf2f9c6f4d591abaeb00b983e4882fcf536d934a8263d342 (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,112 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.1-py3-none-any.whl#sha256=307713427f698c0f3449d782d86287f1494fd2ff773a9fc407fbd29a0de53aed (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,113 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.1-py3-none-any.whl#sha256=f0970e0e530a2a7759daafc81f1c79460dc85d15c1f34551d8394dce187dfe1c (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,113 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.0-py3-none-any.whl#sha256=424b5172258baf2837d8a45e89224c12fdc3cc2a8f4ba0894e5c74111e754e5d (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,114 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.5-py3-none-any.whl#sha256=f27a041efc520420cbffbb63a6c428a2ace092d6ffdc47942d6b9c434a281629 (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,114 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.4-py3-none-any.whl#sha256=4c35b6595c7a62189502f6becaed4b2fe147f7ed6c6ee8d6b69fb4fda5e2139a (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,115 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.3-py3-none-any.whl#sha256=7b62f2fcef8414d2a429f2f3c033e85c9377805612113e7103fa6793aa083cbc (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,115 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.2-py3-none-any.whl#sha256=ba6a5f7a1d3a0a95106d401e13f7639c5ed2ecb367ab7899e2204b14aa9930a1 (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,116 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.1-py3-none-any.whl#sha256=d216729f10eb3463d947658451c8f70fd97a9b2ca94cea55221f7a50f85749e2 (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,116 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0-py3-none-any.whl#sha256=4f914c63f700f85163b395353782bcb87e49392f63c151f387dd4514694d0ac1 (from https://www.piwheels.org/simple/mitos/) 2023-02-25T13:16:21,117 Skipping link: not a file: https://www.piwheels.org/simple/mitos/ 2023-02-25T13:16:21,117 Skipping link: not a file: https://pypi.org/simple/mitos/ 2023-02-25T13:16:21,154 Given no hashes to check 1 links for project 'mitos': discarding no candidates 2023-02-25T13:16:21,181 Collecting mitos==2.1.3 2023-02-25T13:16:21,186 Created temporary directory: /tmp/pip-unpack-s6wufw1m 2023-02-25T13:16:21,422 Downloading mitos-2.1.3.tar.gz (290 kB) 2023-02-25T13:16:21,979 Added mitos==2.1.3 from https://files.pythonhosted.org/packages/d6/1f/b6dbc4704555e91e3efa3184fc90b04e901dc6e787c37091d445dd50bd4b/mitos-2.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-zd3ravjt' 2023-02-25T13:16:21,982 Running setup.py (path:/tmp/pip-wheel-84gw9pn6/mitos_7f220bf7132b4f7493934f0d025ef455/setup.py) egg_info for package mitos 2023-02-25T13:16:21,983 Created temporary directory: /tmp/pip-pip-egg-info-e3w62agc 2023-02-25T13:16:21,983 Preparing metadata (setup.py): started 2023-02-25T13:16:21,986 Running command python setup.py egg_info 2023-02-25T13:16:23,455 running egg_info 2023-02-25T13:16:23,458 creating /tmp/pip-pip-egg-info-e3w62agc/mitos.egg-info 2023-02-25T13:16:23,508 writing /tmp/pip-pip-egg-info-e3w62agc/mitos.egg-info/PKG-INFO 2023-02-25T13:16:23,512 writing dependency_links to /tmp/pip-pip-egg-info-e3w62agc/mitos.egg-info/dependency_links.txt 2023-02-25T13:16:23,517 writing requirements to /tmp/pip-pip-egg-info-e3w62agc/mitos.egg-info/requires.txt 2023-02-25T13:16:23,519 writing top-level names to /tmp/pip-pip-egg-info-e3w62agc/mitos.egg-info/top_level.txt 2023-02-25T13:16:23,522 writing manifest file '/tmp/pip-pip-egg-info-e3w62agc/mitos.egg-info/SOURCES.txt' 2023-02-25T13:16:23,766 reading manifest file '/tmp/pip-pip-egg-info-e3w62agc/mitos.egg-info/SOURCES.txt' 2023-02-25T13:16:23,769 reading manifest template 'MANIFEST.in' 2023-02-25T13:16:23,771 warning: no files found matching 'mitos/codons/gc.prt' 2023-02-25T13:16:23,776 adding license file 'LICENSE' 2023-02-25T13:16:23,787 writing manifest file '/tmp/pip-pip-egg-info-e3w62agc/mitos.egg-info/SOURCES.txt' 2023-02-25T13:16:23,905 Preparing metadata (setup.py): finished with status 'done' 2023-02-25T13:16:23,917 Source in /tmp/pip-wheel-84gw9pn6/mitos_7f220bf7132b4f7493934f0d025ef455 has version 2.1.3, which satisfies requirement mitos==2.1.3 from https://files.pythonhosted.org/packages/d6/1f/b6dbc4704555e91e3efa3184fc90b04e901dc6e787c37091d445dd50bd4b/mitos-2.1.3.tar.gz 2023-02-25T13:16:23,919 Removed mitos==2.1.3 from https://files.pythonhosted.org/packages/d6/1f/b6dbc4704555e91e3efa3184fc90b04e901dc6e787c37091d445dd50bd4b/mitos-2.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-zd3ravjt' 2023-02-25T13:16:23,930 Created temporary directory: /tmp/pip-unpack-arw09kcd 2023-02-25T13:16:23,931 Building wheels for collected packages: mitos 2023-02-25T13:16:23,940 Created temporary directory: /tmp/pip-wheel-q1xu15h6 2023-02-25T13:16:23,941 Building wheel for mitos (setup.py): started 2023-02-25T13:16:23,943 Destination directory: /tmp/pip-wheel-q1xu15h6 2023-02-25T13:16:23,944 Running command python setup.py bdist_wheel 2023-02-25T13:16:25,830 running bdist_wheel 2023-02-25T13:16:25,985 running build 2023-02-25T13:16:25,985 running build_py 2023-02-25T13:16:26,044 creating build 2023-02-25T13:16:26,045 creating build/lib 2023-02-25T13:16:26,047 creating build/lib/mitos 2023-02-25T13:16:26,049 copying mitos/mitoch_revisions.py -> build/lib/mitos 2023-02-25T13:16:26,057 copying mitos/trnascan_parse_separate.py -> build/lib/mitos 2023-02-25T13:16:26,061 copying mitos/names.py -> build/lib/mitos 2023-02-25T13:16:26,065 copying mitos/mumcmp.py -> build/lib/mitos 2023-02-25T13:16:26,069 copying mitos/mitoloc.py -> build/lib/mitos 2023-02-25T13:16:26,073 copying mitos/create_prot_fasta.py -> build/lib/mitos 2023-02-25T13:16:26,078 copying mitos/trna-cm.py -> build/lib/mitos 2023-02-25T13:16:26,093 copying mitos/get-wancy.py -> build/lib/mitos 2023-02-25T13:16:26,096 copying mitos/__init__.py -> build/lib/mitos 2023-02-25T13:16:26,100 copying mitos/convert_tree.py -> build/lib/mitos 2023-02-25T13:16:26,106 copying mitos/codoncount.py -> build/lib/mitos 2023-02-25T13:16:26,109 copying mitos/skew.py -> build/lib/mitos 2023-02-25T13:16:26,114 copying mitos/removegene.py -> build/lib/mitos 2023-02-25T13:16:26,117 copying mitos/merge_results.py -> build/lib/mitos 2023-02-25T13:16:26,122 copying mitos/prepareFiles.py -> build/lib/mitos 2023-02-25T13:16:26,125 copying mitos/mitoscs.py -> build/lib/mitos 2023-02-25T13:16:26,131 copying mitos/inihit.py -> build/lib/mitos 2023-02-25T13:16:26,136 copying mitos/mitos-extension2.py -> build/lib/mitos 2023-02-25T13:16:26,141 copying mitos/CONFIG.py -> build/lib/mitos 2023-02-25T13:16:26,145 copying mitos/mitos-extension.py -> build/lib/mitos 2023-02-25T13:16:26,150 copying mitos/booreparser.py -> build/lib/mitos 2023-02-25T13:16:26,154 copying mitos/cmsearch_parse_separate.py -> build/lib/mitos 2023-02-25T13:16:26,157 copying mitos/ogre-geneorder.py -> build/lib/mitos 2023-02-25T13:16:26,161 copying mitos/update-mitolog.py -> build/lib/mitos 2023-02-25T13:16:26,165 copying mitos/trnadist.py -> build/lib/mitos 2023-02-25T13:16:26,171 creating build/lib/mitos/gfffile 2023-02-25T13:16:26,173 copying mitos/gfffile/__init__.py -> build/lib/mitos/gfffile 2023-02-25T13:16:26,177 creating build/lib/mitos/mitfi 2023-02-25T13:16:26,179 copying mitos/mitfi/__init__.py -> build/lib/mitos/mitfi 2023-02-25T13:16:26,185 creating build/lib/mitos/protfeat 2023-02-25T13:16:26,187 copying mitos/protfeat/__init__.py -> build/lib/mitos/protfeat 2023-02-25T13:16:26,193 creating build/lib/mitos/mitofile 2023-02-25T13:16:26,194 copying mitos/mitofile/__init__.py -> build/lib/mitos/mitofile 2023-02-25T13:16:26,200 creating build/lib/mitos/sequin 2023-02-25T13:16:26,201 copying mitos/sequin/__init__.py -> build/lib/mitos/sequin 2023-02-25T13:16:26,207 creating build/lib/mitos/blast 2023-02-25T13:16:26,208 copying mitos/blast/__init__.py -> build/lib/mitos/blast 2023-02-25T13:16:26,218 creating build/lib/mitos/tbl 2023-02-25T13:16:26,220 copying mitos/tbl/__init__.py -> build/lib/mitos/tbl 2023-02-25T13:16:26,226 creating build/lib/mitos/webserver 2023-02-25T13:16:26,228 copying mitos/webserver/__init__.py -> build/lib/mitos/webserver 2023-02-25T13:16:26,234 creating build/lib/mitos/feature 2023-02-25T13:16:26,235 copying mitos/feature/__init__.py -> build/lib/mitos/feature 2023-02-25T13:16:26,243 creating build/lib/mitos/mito 2023-02-25T13:16:26,244 copying mitos/mito/__init__.py -> build/lib/mitos/mito 2023-02-25T13:16:26,250 creating build/lib/mitos/trna 2023-02-25T13:16:26,252 copying mitos/trna/arwenscan.py -> build/lib/mitos/trna 2023-02-25T13:16:26,256 copying mitos/trna/trnascan.py -> build/lib/mitos/trna 2023-02-25T13:16:26,261 copying mitos/trna/__init__.py -> build/lib/mitos/trna 2023-02-25T13:16:26,266 creating build/lib/mitos/gb 2023-02-25T13:16:26,268 copying mitos/gb/unify.py -> build/lib/mitos/gb 2023-02-25T13:16:26,272 copying mitos/gb/__init__.py -> build/lib/mitos/gb 2023-02-25T13:16:26,280 creating build/lib/mitos/tax 2023-02-25T13:16:26,281 copying mitos/tax/__init__.py -> build/lib/mitos/tax 2023-02-25T13:16:26,286 creating build/lib/mitos/extprog 2023-02-25T13:16:26,287 copying mitos/extprog/__init__.py -> build/lib/mitos/extprog 2023-02-25T13:16:26,293 creating build/lib/mitos/rna 2023-02-25T13:16:26,295 copying mitos/rna/forester.py -> build/lib/mitos/rna 2023-02-25T13:16:26,299 copying mitos/rna/__init__.py -> build/lib/mitos/rna 2023-02-25T13:16:26,302 copying mitos/rna/vienna.py -> build/lib/mitos/rna 2023-02-25T13:16:26,308 creating build/lib/mitos/mergefeature 2023-02-25T13:16:26,310 copying mitos/mergefeature/__init__.py -> build/lib/mitos/mergefeature 2023-02-25T13:16:26,317 creating build/lib/mitos/update 2023-02-25T13:16:26,318 copying mitos/update/__init__.py -> build/lib/mitos/update 2023-02-25T13:16:26,325 creating build/lib/mitos/draw 2023-02-25T13:16:26,327 copying mitos/draw/__init__.py -> build/lib/mitos/draw 2023-02-25T13:16:26,333 creating build/lib/mitos/sequence 2023-02-25T13:16:26,335 copying mitos/sequence/degenerate.py -> build/lib/mitos/sequence 2023-02-25T13:16:26,338 copying mitos/sequence/__init__.py -> build/lib/mitos/sequence 2023-02-25T13:16:26,344 creating build/lib/mitos/bedfile 2023-02-25T13:16:26,346 copying mitos/bedfile/__init__.py -> build/lib/mitos/bedfile 2023-02-25T13:16:26,350 running egg_info 2023-02-25T13:16:26,473 writing mitos.egg-info/PKG-INFO 2023-02-25T13:16:26,477 writing dependency_links to mitos.egg-info/dependency_links.txt 2023-02-25T13:16:26,481 writing requirements to mitos.egg-info/requires.txt 2023-02-25T13:16:26,483 writing top-level names to mitos.egg-info/top_level.txt 2023-02-25T13:16:26,564 reading manifest file 'mitos.egg-info/SOURCES.txt' 2023-02-25T13:16:26,574 reading manifest template 'MANIFEST.in' 2023-02-25T13:16:26,576 warning: no files found matching 'mitos/codons/gc.prt' 2023-02-25T13:16:26,580 adding license file 'LICENSE' 2023-02-25T13:16:26,595 writing manifest file 'mitos.egg-info/SOURCES.txt' 2023-02-25T13:16:26,601 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'mitos.mitfi.parser' as data is deprecated, please list it in `packages`. 2023-02-25T13:16:26,602 !! 2023-02-25T13:16:26,603 ############################ 2023-02-25T13:16:26,603 # Package would be ignored # 2023-02-25T13:16:26,603 ############################ 2023-02-25T13:16:26,604 Python recognizes 'mitos.mitfi.parser' as an importable package, 2023-02-25T13:16:26,604 but it is not listed in the `packages` configuration of setuptools. 2023-02-25T13:16:26,605 'mitos.mitfi.parser' has been automatically added to the distribution only 2023-02-25T13:16:26,605 because it may contain data files, but this behavior is likely to change 2023-02-25T13:16:26,605 in future versions of setuptools (and therefore is considered deprecated). 2023-02-25T13:16:26,606 Please make sure that 'mitos.mitfi.parser' is included as a package by using 2023-02-25T13:16:26,606 the `packages` configuration field or the proper discovery methods 2023-02-25T13:16:26,607 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-25T13:16:26,607 instead of `find_packages(...)`/`find:`). 2023-02-25T13:16:26,607 You can read more about "package discovery" and "data files" on setuptools 2023-02-25T13:16:26,608 documentation page. 2023-02-25T13:16:26,609 !! 2023-02-25T13:16:26,609 check.warn(importable) 2023-02-25T13:16:26,615 copying mitos/plotprot.R -> build/lib/mitos 2023-02-25T13:16:26,619 copying mitos/plotrna.R -> build/lib/mitos 2023-02-25T13:16:26,623 copying mitos/plotstst.R -> build/lib/mitos 2023-02-25T13:16:26,630 creating build/lib/mitos/mitfi/parser 2023-02-25T13:16:26,631 copying mitos/mitfi/parser/improve_infernal_structure.jar -> build/lib/mitos/mitfi/parser 2023-02-25T13:16:26,636 copying mitos/mitfi/parser/mitfiGeneticCodes -> build/lib/mitos/mitfi/parser 2023-02-25T13:16:26,641 copying mitos/mitfi/parser/mitfi_import-1.1.jar -> build/lib/mitos/mitfi/parser 2023-02-25T13:16:26,649 copying mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/lib/mitos/mitfi/parser 2023-02-25T13:16:26,655 copying mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/lib/mitos/mitfi/parser 2023-02-25T13:16:26,661 copying mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/lib/mitos/mitfi/parser 2023-02-25T13:16:26,667 copying mitos/mitfi/parser/mitfi_import.jar -> build/lib/mitos/mitfi/parser 2023-02-25T13:16:26,674 copying mitos/webserver/help.txt -> build/lib/mitos/webserver 2023-02-25T13:16:26,680 copying mitos/webserver/history.txt -> build/lib/mitos/webserver 2023-02-25T13:16:26,684 copying mitos/webserver/index.txt -> build/lib/mitos/webserver 2023-02-25T13:16:26,689 copying mitos/webserver/news.txt -> build/lib/mitos/webserver 2023-02-25T13:16:26,693 copying mitos/webserver/upload.txt -> build/lib/mitos/webserver 2023-02-25T13:16:26,697 copying mitos/webserver/wait.txt -> build/lib/mitos/webserver 2023-02-25T13:16:26,721 running build_scripts 2023-02-25T13:16:26,723 creating build/scripts-3.7 2023-02-25T13:16:26,725 copying and adjusting runmitos.py -> build/scripts-3.7 2023-02-25T13:16:26,734 copying and adjusting drawmitos.py -> build/scripts-3.7 2023-02-25T13:16:26,738 copying and adjusting analyse.py -> build/scripts-3.7 2023-02-25T13:16:26,743 copying and adjusting gcpp.py -> build/scripts-3.7 2023-02-25T13:16:26,747 copying and adjusting geneorder.py -> build/scripts-3.7 2023-02-25T13:16:26,753 copying and adjusting getfeatures.py -> build/scripts-3.7 2023-02-25T13:16:26,757 copying and adjusting getinfo.py -> build/scripts-3.7 2023-02-25T13:16:26,760 copying and adjusting refseqsplit.py -> build/scripts-3.7 2023-02-25T13:16:26,763 copying and adjusting subseq.py -> build/scripts-3.7 2023-02-25T13:16:26,768 copying and adjusting taxtree.py -> build/scripts-3.7 2023-02-25T13:16:26,772 copying update-blastdb.py -> build/scripts-3.7 2023-02-25T13:16:26,777 copying mitos/plotprot.R -> build/scripts-3.7 2023-02-25T13:16:26,781 copying mitos/plotstst.R -> build/scripts-3.7 2023-02-25T13:16:26,786 copying mitos/plotrna.R -> build/scripts-3.7 2023-02-25T13:16:26,788 changing mode of build/scripts-3.7/runmitos.py from 644 to 755 2023-02-25T13:16:26,789 changing mode of build/scripts-3.7/drawmitos.py from 644 to 755 2023-02-25T13:16:26,790 changing mode of build/scripts-3.7/analyse.py from 644 to 755 2023-02-25T13:16:26,790 changing mode of build/scripts-3.7/gcpp.py from 644 to 755 2023-02-25T13:16:26,791 changing mode of build/scripts-3.7/geneorder.py from 644 to 755 2023-02-25T13:16:26,792 changing mode of build/scripts-3.7/getfeatures.py from 644 to 755 2023-02-25T13:16:26,793 changing mode of build/scripts-3.7/getinfo.py from 644 to 755 2023-02-25T13:16:26,793 changing mode of build/scripts-3.7/refseqsplit.py from 644 to 755 2023-02-25T13:16:26,794 changing mode of build/scripts-3.7/subseq.py from 644 to 755 2023-02-25T13:16:26,795 changing mode of build/scripts-3.7/taxtree.py from 644 to 755 2023-02-25T13:16:26,795 changing mode of build/scripts-3.7/update-blastdb.py from 644 to 755 2023-02-25T13:16:26,853 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-02-25T13:16:26,854 setuptools.SetuptoolsDeprecationWarning, 2023-02-25T13:16:26,907 installing to build/bdist.linux-armv7l/wheel 2023-02-25T13:16:26,907 running install 2023-02-25T13:16:26,968 running install_lib 2023-02-25T13:16:27,024 creating build/bdist.linux-armv7l 2023-02-25T13:16:27,024 creating build/bdist.linux-armv7l/wheel 2023-02-25T13:16:27,030 creating build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,033 creating build/bdist.linux-armv7l/wheel/mitos/gfffile 2023-02-25T13:16:27,035 copying build/lib/mitos/gfffile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gfffile 2023-02-25T13:16:27,040 creating build/bdist.linux-armv7l/wheel/mitos/mitfi 2023-02-25T13:16:27,043 creating build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-25T13:16:27,045 copying build/lib/mitos/mitfi/parser/improve_infernal_structure.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-25T13:16:27,050 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-25T13:16:27,056 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-25T13:16:27,062 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-25T13:16:27,068 copying build/lib/mitos/mitfi/parser/mitfi_import.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-25T13:16:27,073 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-25T13:16:27,078 copying build/lib/mitos/mitfi/parser/mitfiGeneticCodes -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-02-25T13:16:27,083 copying build/lib/mitos/mitfi/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitfi 2023-02-25T13:16:27,088 copying build/lib/mitos/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,092 copying build/lib/mitos/mitoch_revisions.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,101 creating build/bdist.linux-armv7l/wheel/mitos/protfeat 2023-02-25T13:16:27,103 copying build/lib/mitos/protfeat/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/protfeat 2023-02-25T13:16:27,110 copying build/lib/mitos/trnascan_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,115 creating build/bdist.linux-armv7l/wheel/mitos/mitofile 2023-02-25T13:16:27,118 copying build/lib/mitos/mitofile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitofile 2023-02-25T13:16:27,123 creating build/bdist.linux-armv7l/wheel/mitos/sequin 2023-02-25T13:16:27,125 copying build/lib/mitos/sequin/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequin 2023-02-25T13:16:27,129 creating build/bdist.linux-armv7l/wheel/mitos/blast 2023-02-25T13:16:27,131 copying build/lib/mitos/blast/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/blast 2023-02-25T13:16:27,140 copying build/lib/mitos/names.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,144 creating build/bdist.linux-armv7l/wheel/mitos/tbl 2023-02-25T13:16:27,146 copying build/lib/mitos/tbl/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tbl 2023-02-25T13:16:27,151 copying build/lib/mitos/mumcmp.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,155 creating build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-25T13:16:27,157 copying build/lib/mitos/webserver/history.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-25T13:16:27,161 copying build/lib/mitos/webserver/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-25T13:16:27,165 copying build/lib/mitos/webserver/index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-25T13:16:27,170 copying build/lib/mitos/webserver/upload.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-25T13:16:27,173 copying build/lib/mitos/webserver/wait.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-25T13:16:27,177 copying build/lib/mitos/webserver/help.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-25T13:16:27,183 copying build/lib/mitos/webserver/news.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-02-25T13:16:27,187 copying build/lib/mitos/mitoloc.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,191 copying build/lib/mitos/create_prot_fasta.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,195 copying build/lib/mitos/trna-cm.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,207 copying build/lib/mitos/get-wancy.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,211 copying build/lib/mitos/__init__.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,216 creating build/bdist.linux-armv7l/wheel/mitos/feature 2023-02-25T13:16:27,218 copying build/lib/mitos/feature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/feature 2023-02-25T13:16:27,224 copying build/lib/mitos/convert_tree.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,230 copying build/lib/mitos/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,234 creating build/bdist.linux-armv7l/wheel/mitos/mito 2023-02-25T13:16:27,236 copying build/lib/mitos/mito/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mito 2023-02-25T13:16:27,242 creating build/bdist.linux-armv7l/wheel/mitos/trna 2023-02-25T13:16:27,244 copying build/lib/mitos/trna/arwenscan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2023-02-25T13:16:27,248 copying build/lib/mitos/trna/trnascan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2023-02-25T13:16:27,253 copying build/lib/mitos/trna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2023-02-25T13:16:27,258 copying build/lib/mitos/codoncount.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,261 copying build/lib/mitos/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,266 copying build/lib/mitos/skew.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,271 creating build/bdist.linux-armv7l/wheel/mitos/gb 2023-02-25T13:16:27,273 copying build/lib/mitos/gb/unify.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2023-02-25T13:16:27,278 copying build/lib/mitos/gb/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2023-02-25T13:16:27,285 creating build/bdist.linux-armv7l/wheel/mitos/tax 2023-02-25T13:16:27,287 copying build/lib/mitos/tax/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tax 2023-02-25T13:16:27,292 creating build/bdist.linux-armv7l/wheel/mitos/extprog 2023-02-25T13:16:27,294 copying build/lib/mitos/extprog/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/extprog 2023-02-25T13:16:27,298 copying build/lib/mitos/removegene.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,302 copying build/lib/mitos/merge_results.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,306 copying build/lib/mitos/prepareFiles.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,310 copying build/lib/mitos/mitoscs.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,316 copying build/lib/mitos/inihit.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,369 copying build/lib/mitos/mitos-extension2.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,374 copying build/lib/mitos/CONFIG.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,378 copying build/lib/mitos/mitos-extension.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,383 copying build/lib/mitos/booreparser.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,388 creating build/bdist.linux-armv7l/wheel/mitos/rna 2023-02-25T13:16:27,390 copying build/lib/mitos/rna/forester.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2023-02-25T13:16:27,395 copying build/lib/mitos/rna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2023-02-25T13:16:27,398 copying build/lib/mitos/rna/vienna.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2023-02-25T13:16:27,403 copying build/lib/mitos/cmsearch_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,406 copying build/lib/mitos/ogre-geneorder.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,411 creating build/bdist.linux-armv7l/wheel/mitos/mergefeature 2023-02-25T13:16:27,413 copying build/lib/mitos/mergefeature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mergefeature 2023-02-25T13:16:27,418 copying build/lib/mitos/update-mitolog.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,422 copying build/lib/mitos/trnadist.py -> build/bdist.linux-armv7l/wheel/mitos 2023-02-25T13:16:27,429 creating build/bdist.linux-armv7l/wheel/mitos/update 2023-02-25T13:16:27,430 copying build/lib/mitos/update/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/update 2023-02-25T13:16:27,436 creating build/bdist.linux-armv7l/wheel/mitos/draw 2023-02-25T13:16:27,438 copying build/lib/mitos/draw/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/draw 2023-02-25T13:16:27,443 creating build/bdist.linux-armv7l/wheel/mitos/sequence 2023-02-25T13:16:27,445 copying build/lib/mitos/sequence/degenerate.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2023-02-25T13:16:27,449 copying build/lib/mitos/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2023-02-25T13:16:27,455 creating build/bdist.linux-armv7l/wheel/mitos/bedfile 2023-02-25T13:16:27,456 copying build/lib/mitos/bedfile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/bedfile 2023-02-25T13:16:27,460 running install_egg_info 2023-02-25T13:16:27,527 Copying mitos.egg-info to build/bdist.linux-armv7l/wheel/mitos-2.1.3-py3.7.egg-info 2023-02-25T13:16:27,545 running install_scripts 2023-02-25T13:16:27,548 creating build/bdist.linux-armv7l/wheel/mitos-2.1.3.data 2023-02-25T13:16:27,549 creating build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts 2023-02-25T13:16:27,551 copying build/scripts-3.7/subseq.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts 2023-02-25T13:16:27,555 copying build/scripts-3.7/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts 2023-02-25T13:16:27,559 copying build/scripts-3.7/analyse.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts 2023-02-25T13:16:27,563 copying build/scripts-3.7/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts 2023-02-25T13:16:27,567 copying build/scripts-3.7/getfeatures.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts 2023-02-25T13:16:27,571 copying build/scripts-3.7/geneorder.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts 2023-02-25T13:16:27,576 copying build/scripts-3.7/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts 2023-02-25T13:16:27,580 copying build/scripts-3.7/update-blastdb.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts 2023-02-25T13:16:27,583 copying build/scripts-3.7/getinfo.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts 2023-02-25T13:16:27,587 copying build/scripts-3.7/drawmitos.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts 2023-02-25T13:16:27,590 copying build/scripts-3.7/refseqsplit.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts 2023-02-25T13:16:27,594 copying build/scripts-3.7/taxtree.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts 2023-02-25T13:16:27,598 copying build/scripts-3.7/gcpp.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts 2023-02-25T13:16:27,602 copying build/scripts-3.7/runmitos.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts 2023-02-25T13:16:27,608 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts/subseq.py to 755 2023-02-25T13:16:27,609 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts/plotprot.R to 755 2023-02-25T13:16:27,610 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts/analyse.py to 755 2023-02-25T13:16:27,610 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts/plotrna.R to 755 2023-02-25T13:16:27,611 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts/getfeatures.py to 755 2023-02-25T13:16:27,612 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts/geneorder.py to 755 2023-02-25T13:16:27,612 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts/plotstst.R to 755 2023-02-25T13:16:27,613 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts/update-blastdb.py to 755 2023-02-25T13:16:27,614 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts/getinfo.py to 755 2023-02-25T13:16:27,615 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts/drawmitos.py to 755 2023-02-25T13:16:27,615 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts/refseqsplit.py to 755 2023-02-25T13:16:27,616 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts/taxtree.py to 755 2023-02-25T13:16:27,617 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts/gcpp.py to 755 2023-02-25T13:16:27,618 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.3.data/scripts/runmitos.py to 755 2023-02-25T13:16:27,646 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-02-25T13:16:27,654 creating build/bdist.linux-armv7l/wheel/mitos-2.1.3.dist-info/WHEEL 2023-02-25T13:16:27,658 creating '/tmp/pip-wheel-q1xu15h6/mitos-2.1.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-02-25T13:16:27,665 adding 'mitos/CONFIG.py' 2023-02-25T13:16:27,668 adding 'mitos/__init__.py' 2023-02-25T13:16:27,672 adding 'mitos/booreparser.py' 2023-02-25T13:16:27,675 adding 'mitos/cmsearch_parse_separate.py' 2023-02-25T13:16:27,678 adding 'mitos/codoncount.py' 2023-02-25T13:16:27,686 adding 'mitos/convert_tree.py' 2023-02-25T13:16:27,692 adding 'mitos/create_prot_fasta.py' 2023-02-25T13:16:27,695 adding 'mitos/get-wancy.py' 2023-02-25T13:16:27,699 adding 'mitos/inihit.py' 2023-02-25T13:16:27,703 adding 'mitos/merge_results.py' 2023-02-25T13:16:27,715 adding 'mitos/mitoch_revisions.py' 2023-02-25T13:16:27,719 adding 'mitos/mitoloc.py' 2023-02-25T13:16:27,724 adding 'mitos/mitos-extension.py' 2023-02-25T13:16:27,729 adding 'mitos/mitos-extension2.py' 2023-02-25T13:16:27,742 adding 'mitos/mitoscs.py' 2023-02-25T13:16:27,745 adding 'mitos/mumcmp.py' 2023-02-25T13:16:27,748 adding 'mitos/names.py' 2023-02-25T13:16:27,751 adding 'mitos/ogre-geneorder.py' 2023-02-25T13:16:27,754 adding 'mitos/plotprot.R' 2023-02-25T13:16:27,757 adding 'mitos/plotrna.R' 2023-02-25T13:16:27,760 adding 'mitos/plotstst.R' 2023-02-25T13:16:27,763 adding 'mitos/prepareFiles.py' 2023-02-25T13:16:27,765 adding 'mitos/removegene.py' 2023-02-25T13:16:27,770 adding 'mitos/skew.py' 2023-02-25T13:16:27,810 adding 'mitos/trna-cm.py' 2023-02-25T13:16:27,820 adding 'mitos/trnadist.py' 2023-02-25T13:16:27,824 adding 'mitos/trnascan_parse_separate.py' 2023-02-25T13:16:27,827 adding 'mitos/update-mitolog.py' 2023-02-25T13:16:27,831 adding 'mitos/bedfile/__init__.py' 2023-02-25T13:16:27,859 adding 'mitos/blast/__init__.py' 2023-02-25T13:16:27,864 adding 'mitos/draw/__init__.py' 2023-02-25T13:16:27,869 adding 'mitos/extprog/__init__.py' 2023-02-25T13:16:27,882 adding 'mitos/feature/__init__.py' 2023-02-25T13:16:27,898 adding 'mitos/gb/__init__.py' 2023-02-25T13:16:27,903 adding 'mitos/gb/unify.py' 2023-02-25T13:16:27,906 adding 'mitos/gfffile/__init__.py' 2023-02-25T13:16:27,915 adding 'mitos/mergefeature/__init__.py' 2023-02-25T13:16:27,923 adding 'mitos/mitfi/__init__.py' 2023-02-25T13:16:27,928 adding 'mitos/mitfi/parser/improve_infernal_structure.jar' 2023-02-25T13:16:27,931 adding 'mitos/mitfi/parser/mitfiGeneticCodes' 2023-02-25T13:16:27,941 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar' 2023-02-25T13:16:27,951 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.old' 2023-02-25T13:16:27,960 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.org' 2023-02-25T13:16:27,970 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ' 2023-02-25T13:16:27,980 adding 'mitos/mitfi/parser/mitfi_import.jar' 2023-02-25T13:16:27,985 adding 'mitos/mito/__init__.py' 2023-02-25T13:16:27,989 adding 'mitos/mitofile/__init__.py' 2023-02-25T13:16:27,998 adding 'mitos/protfeat/__init__.py' 2023-02-25T13:16:28,002 adding 'mitos/rna/__init__.py' 2023-02-25T13:16:28,005 adding 'mitos/rna/forester.py' 2023-02-25T13:16:28,011 adding 'mitos/rna/vienna.py' 2023-02-25T13:16:28,018 adding 'mitos/sequence/__init__.py' 2023-02-25T13:16:28,021 adding 'mitos/sequence/degenerate.py' 2023-02-25T13:16:28,024 adding 'mitos/sequin/__init__.py' 2023-02-25T13:16:28,028 adding 'mitos/tax/__init__.py' 2023-02-25T13:16:28,032 adding 'mitos/tbl/__init__.py' 2023-02-25T13:16:28,037 adding 'mitos/trna/__init__.py' 2023-02-25T13:16:28,041 adding 'mitos/trna/arwenscan.py' 2023-02-25T13:16:28,046 adding 'mitos/trna/trnascan.py' 2023-02-25T13:16:28,054 adding 'mitos/update/__init__.py' 2023-02-25T13:16:28,060 adding 'mitos/webserver/__init__.py' 2023-02-25T13:16:28,069 adding 'mitos/webserver/help.txt' 2023-02-25T13:16:28,072 adding 'mitos/webserver/history.txt' 2023-02-25T13:16:28,076 adding 'mitos/webserver/index.txt' 2023-02-25T13:16:28,078 adding 'mitos/webserver/news.txt' 2023-02-25T13:16:28,081 adding 'mitos/webserver/upload.txt' 2023-02-25T13:16:28,083 adding 'mitos/webserver/wait.txt' 2023-02-25T13:16:28,090 adding 'mitos-2.1.3.data/scripts/analyse.py' 2023-02-25T13:16:28,093 adding 'mitos-2.1.3.data/scripts/drawmitos.py' 2023-02-25T13:16:28,097 adding 'mitos-2.1.3.data/scripts/gcpp.py' 2023-02-25T13:16:28,102 adding 'mitos-2.1.3.data/scripts/geneorder.py' 2023-02-25T13:16:28,106 adding 'mitos-2.1.3.data/scripts/getfeatures.py' 2023-02-25T13:16:28,109 adding 'mitos-2.1.3.data/scripts/getinfo.py' 2023-02-25T13:16:28,112 adding 'mitos-2.1.3.data/scripts/plotprot.R' 2023-02-25T13:16:28,114 adding 'mitos-2.1.3.data/scripts/plotrna.R' 2023-02-25T13:16:28,117 adding 'mitos-2.1.3.data/scripts/plotstst.R' 2023-02-25T13:16:28,120 adding 'mitos-2.1.3.data/scripts/refseqsplit.py' 2023-02-25T13:16:28,133 adding 'mitos-2.1.3.data/scripts/runmitos.py' 2023-02-25T13:16:28,138 adding 'mitos-2.1.3.data/scripts/subseq.py' 2023-02-25T13:16:28,142 adding 'mitos-2.1.3.data/scripts/taxtree.py' 2023-02-25T13:16:28,145 adding 'mitos-2.1.3.data/scripts/update-blastdb.py' 2023-02-25T13:16:28,149 adding 'mitos-2.1.3.dist-info/LICENSE' 2023-02-25T13:16:28,151 adding 'mitos-2.1.3.dist-info/METADATA' 2023-02-25T13:16:28,153 adding 'mitos-2.1.3.dist-info/WHEEL' 2023-02-25T13:16:28,155 adding 'mitos-2.1.3.dist-info/top_level.txt' 2023-02-25T13:16:28,158 adding 'mitos-2.1.3.dist-info/RECORD' 2023-02-25T13:16:28,177 removing build/bdist.linux-armv7l/wheel 2023-02-25T13:16:28,383 Building wheel for mitos (setup.py): finished with status 'done' 2023-02-25T13:16:28,400 Created wheel for mitos: filename=mitos-2.1.3-py3-none-any.whl size=349989 sha256=dd19f4a9b02b695465d7d7861d7f611d1c73f231e6205b881d1617cd733bdd87 2023-02-25T13:16:28,403 Stored in directory: /tmp/pip-ephem-wheel-cache-mczipmrw/wheels/5f/04/c3/d529f1feac60acb2e3f7c1d5b8628f92e799c5c8727edd3aa2 2023-02-25T13:16:28,433 Successfully built mitos 2023-02-25T13:16:28,467 Removed build tracker: '/tmp/pip-build-tracker-zd3ravjt'