2023-02-27T10:43:47,950 Created temporary directory: /tmp/pip-ephem-wheel-cache-j5jv98mm
2023-02-27T10:43:47,952 Created temporary directory: /tmp/pip-build-tracker-nsyepbnd
2023-02-27T10:43:47,953 Initialized build tracking at /tmp/pip-build-tracker-nsyepbnd
2023-02-27T10:43:47,953 Created build tracker: /tmp/pip-build-tracker-nsyepbnd
2023-02-27T10:43:47,953 Entered build tracker: /tmp/pip-build-tracker-nsyepbnd
2023-02-27T10:43:47,954 Created temporary directory: /tmp/pip-wheel-ivkwknzo
2023-02-27T10:43:47,958 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-27T10:43:47,961 Created temporary directory: /tmp/pip-ephem-wheel-cache-odmrpeuh
2023-02-27T10:43:47,990 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-27T10:43:47,993 2 location(s) to search for versions of rattlesnp:
2023-02-27T10:43:47,993 * https://pypi.org/simple/rattlesnp/
2023-02-27T10:43:47,993 * https://www.piwheels.org/simple/rattlesnp/
2023-02-27T10:43:47,993 Fetching project page and analyzing links: https://pypi.org/simple/rattlesnp/
2023-02-27T10:43:47,994 Getting page https://pypi.org/simple/rattlesnp/
2023-02-27T10:43:47,995 Found index url https://pypi.org/simple
2023-02-27T10:43:48,049 Fetched page https://pypi.org/simple/rattlesnp/ as application/vnd.pypi.simple.v1+json
2023-02-27T10:43:48,050   Skipping link: No binaries permitted for rattlesnp: https://files.pythonhosted.org/packages/95/7c/5375b0373ced70a3896b867d20aa0f16c8e4e7df14c5b7aef1c4e76e8868/RattleSNP-1.0.0-py3-none-any.whl (from https://pypi.org/simple/rattlesnp/) (requires-python:>=3.6)
2023-02-27T10:43:48,051   Found link https://files.pythonhosted.org/packages/4a/ce/b196105d45b6009e8206ed2f40848b1772007394ef0fa070d7146e8aca64/RattleSNP-1.0.0.tar.gz (from https://pypi.org/simple/rattlesnp/) (requires-python:>=3.6), version: 1.0.0
2023-02-27T10:43:48,051   Skipping link: No binaries permitted for rattlesnp: https://files.pythonhosted.org/packages/ee/73/03d4f3662eeebb99e38cd92db265ee503ac2863026310ae4d44cacec1c5c/rattleSNP-1.1.0-py3-none-any.whl (from https://pypi.org/simple/rattlesnp/) (requires-python:>=3.8)
2023-02-27T10:43:48,052   Found link https://files.pythonhosted.org/packages/1c/2b/102f16412447ed3e220ebdef410461e5787730a8ef6c271f83474f08ebcb/rattleSNP-1.1.0.tar.gz (from https://pypi.org/simple/rattlesnp/) (requires-python:>=3.8), version: 1.1.0
2023-02-27T10:43:48,052 Fetching project page and analyzing links: https://www.piwheels.org/simple/rattlesnp/
2023-02-27T10:43:48,053 Getting page https://www.piwheels.org/simple/rattlesnp/
2023-02-27T10:43:48,053 Found index url https://www.piwheels.org/simple
2023-02-27T10:43:48,218 Fetched page https://www.piwheels.org/simple/rattlesnp/ as text/html
2023-02-27T10:43:48,220   Skipping link: No binaries permitted for rattlesnp: https://www.piwheels.org/simple/rattlesnp/RattleSNP-1.0.0-py3-none-any.whl#sha256=f5793df7ad81c491f6bd50529689f6b0f7a1fec980e1f9e3cf0ab73e089e7cca (from https://www.piwheels.org/simple/rattlesnp/) (requires-python:>=3.6)
2023-02-27T10:43:48,220 Skipping link: not a file: https://www.piwheels.org/simple/rattlesnp/
2023-02-27T10:43:48,221 Skipping link: not a file: https://pypi.org/simple/rattlesnp/
2023-02-27T10:43:48,245 Given no hashes to check 1 links for project 'rattlesnp': discarding no candidates
2023-02-27T10:43:48,267 Collecting rattlesnp==1.1.0
2023-02-27T10:43:48,270   Created temporary directory: /tmp/pip-unpack-0zqd2vwk
2023-02-27T10:43:48,776   Downloading rattleSNP-1.1.0.tar.gz (690 kB)
2023-02-27T10:43:49,135   Added rattlesnp==1.1.0 from https://files.pythonhosted.org/packages/1c/2b/102f16412447ed3e220ebdef410461e5787730a8ef6c271f83474f08ebcb/rattleSNP-1.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-nsyepbnd'
2023-02-27T10:43:49,143   Created temporary directory: /tmp/pip-build-env-5twe_04p
2023-02-27T10:43:49,154   Installing build dependencies: started
2023-02-27T10:43:49,155   Running command pip subprocess to install build dependencies
2023-02-27T10:43:50,360   Using pip 23.0.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-02-27T10:43:50,959   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-27T10:43:50,986   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-27T10:43:52,653   Collecting setuptools>=42
2023-02-27T10:43:52,757     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.4.0-py3-none-any.whl (1.1 MB)
2023-02-27T10:43:53,114   Collecting setuptools_scm[toml]>=6.2
2023-02-27T10:43:53,134     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.1.0-py3-none-any.whl (43 kB)
2023-02-27T10:43:53,343   Collecting packaging>=20.0
2023-02-27T10:43:53,362     Using cached https://www.piwheels.org/simple/packaging/packaging-23.0-py3-none-any.whl (42 kB)
2023-02-27T10:43:53,466   Collecting typing-extensions
2023-02-27T10:43:53,487     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.5.0-py3-none-any.whl (27 kB)
2023-02-27T10:43:53,626   Collecting tomli>=1.0.0
2023-02-27T10:43:53,643     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-02-27T10:43:55,453   Installing collected packages: typing-extensions, tomli, setuptools, packaging, setuptools_scm
2023-02-27T10:43:58,147   Successfully installed packaging-23.0 setuptools-67.4.0 setuptools_scm-7.1.0 tomli-2.0.1 typing-extensions-4.5.0
2023-02-27T10:43:58,648   Installing build dependencies: finished with status 'done'
2023-02-27T10:43:58,654   Getting requirements to build wheel: started
2023-02-27T10:43:58,655   Running command Getting requirements to build wheel
2023-02-27T10:43:59,586   running egg_info
2023-02-27T10:43:59,592   writing rattleSNP.egg-info/PKG-INFO
2023-02-27T10:43:59,596   writing dependency_links to rattleSNP.egg-info/dependency_links.txt
2023-02-27T10:43:59,599   writing entry points to rattleSNP.egg-info/entry_points.txt
2023-02-27T10:43:59,601   writing requirements to rattleSNP.egg-info/requires.txt
2023-02-27T10:43:59,602   writing top-level names to rattleSNP.egg-info/top_level.txt
2023-02-27T10:43:59,647   listing git files failed - pretending there aren't any
2023-02-27T10:43:59,657   reading manifest file 'rattleSNP.egg-info/SOURCES.txt'
2023-02-27T10:43:59,661   adding license file 'LICENCE'
2023-02-27T10:43:59,665   writing manifest file 'rattleSNP.egg-info/SOURCES.txt'
2023-02-27T10:43:59,777   Getting requirements to build wheel: finished with status 'done'
2023-02-27T10:43:59,795   Installing backend dependencies: started
2023-02-27T10:43:59,796   Running command pip subprocess to install backend dependencies
2023-02-27T10:44:01,012   Using pip 23.0.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-02-27T10:44:01,587   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-27T10:44:01,613   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-27T10:44:02,069   Collecting wheel
2023-02-27T10:44:02,087     Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB)
2023-02-27T10:44:03,533   Installing collected packages: wheel
2023-02-27T10:44:03,720     Creating /tmp/pip-build-env-5twe_04p/normal/bin
2023-02-27T10:44:03,723     changing mode of /tmp/pip-build-env-5twe_04p/normal/bin/wheel to 755
2023-02-27T10:44:03,736   Successfully installed wheel-0.38.4
2023-02-27T10:44:04,169   Installing backend dependencies: finished with status 'done'
2023-02-27T10:44:04,172   Created temporary directory: /tmp/pip-modern-metadata-cqsmjnk4
2023-02-27T10:44:04,176   Preparing metadata (pyproject.toml): started
2023-02-27T10:44:04,177   Running command Preparing metadata (pyproject.toml)
2023-02-27T10:44:05,185   running dist_info
2023-02-27T10:44:05,192   creating /tmp/pip-modern-metadata-cqsmjnk4/rattleSNP.egg-info
2023-02-27T10:44:05,198   writing /tmp/pip-modern-metadata-cqsmjnk4/rattleSNP.egg-info/PKG-INFO
2023-02-27T10:44:05,202   writing dependency_links to /tmp/pip-modern-metadata-cqsmjnk4/rattleSNP.egg-info/dependency_links.txt
2023-02-27T10:44:05,204   writing entry points to /tmp/pip-modern-metadata-cqsmjnk4/rattleSNP.egg-info/entry_points.txt
2023-02-27T10:44:05,206   writing requirements to /tmp/pip-modern-metadata-cqsmjnk4/rattleSNP.egg-info/requires.txt
2023-02-27T10:44:05,207   writing top-level names to /tmp/pip-modern-metadata-cqsmjnk4/rattleSNP.egg-info/top_level.txt
2023-02-27T10:44:05,208   writing manifest file '/tmp/pip-modern-metadata-cqsmjnk4/rattleSNP.egg-info/SOURCES.txt'
2023-02-27T10:44:05,252   listing git files failed - pretending there aren't any
2023-02-27T10:44:05,262   reading manifest file '/tmp/pip-modern-metadata-cqsmjnk4/rattleSNP.egg-info/SOURCES.txt'
2023-02-27T10:44:05,266   adding license file 'LICENCE'
2023-02-27T10:44:05,269   writing manifest file '/tmp/pip-modern-metadata-cqsmjnk4/rattleSNP.egg-info/SOURCES.txt'
2023-02-27T10:44:05,270   creating '/tmp/pip-modern-metadata-cqsmjnk4/rattleSNP-1.1.0.dist-info'
2023-02-27T10:44:05,436   Preparing metadata (pyproject.toml): finished with status 'done'
2023-02-27T10:44:05,447   Source in /tmp/pip-wheel-ivkwknzo/rattlesnp_0e94a233eea440a98fd2c02d6825b3ae has version 1.1.0, which satisfies requirement rattlesnp==1.1.0 from https://files.pythonhosted.org/packages/1c/2b/102f16412447ed3e220ebdef410461e5787730a8ef6c271f83474f08ebcb/rattleSNP-1.1.0.tar.gz
2023-02-27T10:44:05,448   Removed rattlesnp==1.1.0 from https://files.pythonhosted.org/packages/1c/2b/102f16412447ed3e220ebdef410461e5787730a8ef6c271f83474f08ebcb/rattleSNP-1.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-nsyepbnd'
2023-02-27T10:44:05,462 Created temporary directory: /tmp/pip-unpack-z_dwdqjq
2023-02-27T10:44:05,462 Building wheels for collected packages: rattlesnp
2023-02-27T10:44:05,468   Created temporary directory: /tmp/pip-wheel-sb8yxrnc
2023-02-27T10:44:05,468   Destination directory: /tmp/pip-wheel-sb8yxrnc
2023-02-27T10:44:05,470   Building wheel for rattlesnp (pyproject.toml): started
2023-02-27T10:44:05,471   Running command Building wheel for rattlesnp (pyproject.toml)
2023-02-27T10:44:06,349   running bdist_wheel
2023-02-27T10:44:06,370   running build
2023-02-27T10:44:06,371   running build_py
2023-02-27T10:44:06,378   creating build
2023-02-27T10:44:06,378   creating build/lib
2023-02-27T10:44:06,379   creating build/lib/rattleSNP
2023-02-27T10:44:06,381   copying rattleSNP/global_variables.py -> build/lib/rattleSNP
2023-02-27T10:44:06,383   copying rattleSNP/__init__.py -> build/lib/rattleSNP
2023-02-27T10:44:06,384   copying rattleSNP/_version.py -> build/lib/rattleSNP
2023-02-27T10:44:06,386   copying rattleSNP/main.py -> build/lib/rattleSNP
2023-02-27T10:44:06,388   copying rattleSNP/snakemake_module.py -> build/lib/rattleSNP
2023-02-27T10:44:06,392   creating build/lib/rattleSNP/scripts
2023-02-27T10:44:06,393   copying rattleSNP/scripts/vcf2phylip.py -> build/lib/rattleSNP/scripts
2023-02-27T10:44:06,396   copying rattleSNP/scripts/__init__.py -> build/lib/rattleSNP/scripts
2023-02-27T10:44:06,398   copying rattleSNP/scripts/vcf2geno.py -> build/lib/rattleSNP/scripts
2023-02-27T10:44:06,401   creating build/lib/rattleSNP/snakemake_scripts
2023-02-27T10:44:06,402   copying rattleSNP/snakemake_scripts/rattleSNP_module.py -> build/lib/rattleSNP/snakemake_scripts
2023-02-27T10:44:06,406   creating build/lib/rattleSNP/default_profile
2023-02-27T10:44:06,407   copying rattleSNP/default_profile/slurm-sidecar.py -> build/lib/rattleSNP/default_profile
2023-02-27T10:44:06,410   copying rattleSNP/default_profile/slurm-status.py -> build/lib/rattleSNP/default_profile
2023-02-27T10:44:06,412   copying rattleSNP/default_profile/slurm_utils.py -> build/lib/rattleSNP/default_profile
2023-02-27T10:44:06,415   copying rattleSNP/default_profile/CookieCutter.py -> build/lib/rattleSNP/default_profile
2023-02-27T10:44:06,417   copying rattleSNP/default_profile/slurm-submit.py -> build/lib/rattleSNP/default_profile
2023-02-27T10:44:06,419   running egg_info
2023-02-27T10:44:06,430   writing rattleSNP.egg-info/PKG-INFO
2023-02-27T10:44:06,434   writing dependency_links to rattleSNP.egg-info/dependency_links.txt
2023-02-27T10:44:06,436   writing entry points to rattleSNP.egg-info/entry_points.txt
2023-02-27T10:44:06,437   writing requirements to rattleSNP.egg-info/requires.txt
2023-02-27T10:44:06,439   writing top-level names to rattleSNP.egg-info/top_level.txt
2023-02-27T10:44:06,472   listing git files failed - pretending there aren't any
2023-02-27T10:44:06,482   reading manifest file 'rattleSNP.egg-info/SOURCES.txt'
2023-02-27T10:44:06,491   adding license file 'LICENCE'
2023-02-27T10:44:06,496   writing manifest file 'rattleSNP.egg-info/SOURCES.txt'
2023-02-27T10:44:06,501   copying rattleSNP/VERSION -> build/lib/rattleSNP
2023-02-27T10:44:06,504   copying rattleSNP/rattleSNP-complete.sh -> build/lib/rattleSNP
2023-02-27T10:44:06,506   copying rattleSNP/rattleSNP_logo.png -> build/lib/rattleSNP
2023-02-27T10:44:06,531   creating build/lib/rattleSNP/install_files
2023-02-27T10:44:06,532   copying rattleSNP/install_files/cluster_config_SLURM.yaml -> build/lib/rattleSNP/install_files
2023-02-27T10:44:06,534   copying rattleSNP/install_files/config.yaml -> build/lib/rattleSNP/install_files
2023-02-27T10:44:06,536   copying rattleSNP/install_files/tools_path.yaml -> build/lib/rattleSNP/install_files
2023-02-27T10:44:06,539   creating build/lib/rattleSNP/containers
2023-02-27T10:44:06,540   copying rattleSNP/containers/Dockerfile_test -> build/lib/rattleSNP/containers
2023-02-27T10:44:06,542   copying rattleSNP/containers/Singularity.rattleSNP_tools.def -> build/lib/rattleSNP/containers
2023-02-27T10:44:06,545   copying rattleSNP/containers/Singularity.report.def -> build/lib/rattleSNP/containers
2023-02-27T10:44:06,547   copying rattleSNP/snakemake_scripts/report.Rmd -> build/lib/rattleSNP/snakemake_scripts
2023-02-27T10:44:06,549   copying rattleSNP/snakemake_scripts/report_vcf.Rmd -> build/lib/rattleSNP/snakemake_scripts
2023-02-27T10:44:06,552   creating build/lib/rattleSNP/snakefiles
2023-02-27T10:44:06,553   copying rattleSNP/snakefiles/Snakefile -> build/lib/rattleSNP/snakefiles
2023-02-27T10:44:06,557   copying rattleSNP/snakefiles/mapping_stat.snake -> build/lib/rattleSNP/snakefiles
2023-02-27T10:44:06,561   creating build/lib/rattleSNP/install_files/config_test
2023-02-27T10:44:06,562   copying rattleSNP/install_files/config_test/config_CMSR.yaml -> build/lib/rattleSNP/install_files/config_test
2023-02-27T10:44:06,579   installing to build/bdist.linux-armv7l/wheel
2023-02-27T10:44:06,580   running install
2023-02-27T10:44:06,605   running install_lib
2023-02-27T10:44:06,612   creating build/bdist.linux-armv7l
2023-02-27T10:44:06,612   creating build/bdist.linux-armv7l/wheel
2023-02-27T10:44:06,614   creating build/bdist.linux-armv7l/wheel/rattleSNP
2023-02-27T10:44:06,616   copying build/lib/rattleSNP/global_variables.py -> build/bdist.linux-armv7l/wheel/rattleSNP
2023-02-27T10:44:06,618   copying build/lib/rattleSNP/rattleSNP_logo.png -> build/bdist.linux-armv7l/wheel/rattleSNP
2023-02-27T10:44:06,642   creating build/bdist.linux-armv7l/wheel/rattleSNP/install_files
2023-02-27T10:44:06,643   copying build/lib/rattleSNP/install_files/cluster_config_SLURM.yaml -> build/bdist.linux-armv7l/wheel/rattleSNP/install_files
2023-02-27T10:44:06,645   copying build/lib/rattleSNP/install_files/config.yaml -> build/bdist.linux-armv7l/wheel/rattleSNP/install_files
2023-02-27T10:44:06,647   copying build/lib/rattleSNP/install_files/tools_path.yaml -> build/bdist.linux-armv7l/wheel/rattleSNP/install_files
2023-02-27T10:44:06,650   creating build/bdist.linux-armv7l/wheel/rattleSNP/install_files/config_test
2023-02-27T10:44:06,651   copying build/lib/rattleSNP/install_files/config_test/config_CMSR.yaml -> build/bdist.linux-armv7l/wheel/rattleSNP/install_files/config_test
2023-02-27T10:44:06,653   creating build/bdist.linux-armv7l/wheel/rattleSNP/scripts
2023-02-27T10:44:06,654   copying build/lib/rattleSNP/scripts/vcf2phylip.py -> build/bdist.linux-armv7l/wheel/rattleSNP/scripts
2023-02-27T10:44:06,657   copying build/lib/rattleSNP/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/rattleSNP/scripts
2023-02-27T10:44:06,659   copying build/lib/rattleSNP/scripts/vcf2geno.py -> build/bdist.linux-armv7l/wheel/rattleSNP/scripts
2023-02-27T10:44:06,662   creating build/bdist.linux-armv7l/wheel/rattleSNP/containers
2023-02-27T10:44:06,662   copying build/lib/rattleSNP/containers/Dockerfile_test -> build/bdist.linux-armv7l/wheel/rattleSNP/containers
2023-02-27T10:44:06,664   copying build/lib/rattleSNP/containers/Singularity.rattleSNP_tools.def -> build/bdist.linux-armv7l/wheel/rattleSNP/containers
2023-02-27T10:44:06,666   copying build/lib/rattleSNP/containers/Singularity.report.def -> build/bdist.linux-armv7l/wheel/rattleSNP/containers
2023-02-27T10:44:06,668   copying build/lib/rattleSNP/VERSION -> build/bdist.linux-armv7l/wheel/rattleSNP
2023-02-27T10:44:06,671   creating build/bdist.linux-armv7l/wheel/rattleSNP/snakemake_scripts
2023-02-27T10:44:06,671   copying build/lib/rattleSNP/snakemake_scripts/report_vcf.Rmd -> build/bdist.linux-armv7l/wheel/rattleSNP/snakemake_scripts
2023-02-27T10:44:06,674   copying build/lib/rattleSNP/snakemake_scripts/report.Rmd -> build/bdist.linux-armv7l/wheel/rattleSNP/snakemake_scripts
2023-02-27T10:44:06,676   copying build/lib/rattleSNP/snakemake_scripts/rattleSNP_module.py -> build/bdist.linux-armv7l/wheel/rattleSNP/snakemake_scripts
2023-02-27T10:44:06,678   copying build/lib/rattleSNP/__init__.py -> build/bdist.linux-armv7l/wheel/rattleSNP
2023-02-27T10:44:06,681   creating build/bdist.linux-armv7l/wheel/rattleSNP/snakefiles
2023-02-27T10:44:06,682   copying build/lib/rattleSNP/snakefiles/mapping_stat.snake -> build/bdist.linux-armv7l/wheel/rattleSNP/snakefiles
2023-02-27T10:44:06,684   copying build/lib/rattleSNP/snakefiles/Snakefile -> build/bdist.linux-armv7l/wheel/rattleSNP/snakefiles
2023-02-27T10:44:06,688   creating build/bdist.linux-armv7l/wheel/rattleSNP/default_profile
2023-02-27T10:44:06,689   copying build/lib/rattleSNP/default_profile/slurm-sidecar.py -> build/bdist.linux-armv7l/wheel/rattleSNP/default_profile
2023-02-27T10:44:06,691   copying build/lib/rattleSNP/default_profile/slurm-status.py -> build/bdist.linux-armv7l/wheel/rattleSNP/default_profile
2023-02-27T10:44:06,693   copying build/lib/rattleSNP/default_profile/slurm_utils.py -> build/bdist.linux-armv7l/wheel/rattleSNP/default_profile
2023-02-27T10:44:06,695   copying build/lib/rattleSNP/default_profile/CookieCutter.py -> build/bdist.linux-armv7l/wheel/rattleSNP/default_profile
2023-02-27T10:44:06,697   copying build/lib/rattleSNP/default_profile/slurm-submit.py -> build/bdist.linux-armv7l/wheel/rattleSNP/default_profile
2023-02-27T10:44:06,699   copying build/lib/rattleSNP/_version.py -> build/bdist.linux-armv7l/wheel/rattleSNP
2023-02-27T10:44:06,701   copying build/lib/rattleSNP/main.py -> build/bdist.linux-armv7l/wheel/rattleSNP
2023-02-27T10:44:06,703   copying build/lib/rattleSNP/snakemake_module.py -> build/bdist.linux-armv7l/wheel/rattleSNP
2023-02-27T10:44:06,705   copying build/lib/rattleSNP/rattleSNP-complete.sh -> build/bdist.linux-armv7l/wheel/rattleSNP
2023-02-27T10:44:06,707   running install_egg_info
2023-02-27T10:44:06,713   Copying rattleSNP.egg-info to build/bdist.linux-armv7l/wheel/rattleSNP-1.1.0-py3.9.egg-info
2023-02-27T10:44:06,727   running install_scripts
2023-02-27T10:44:06,756   creating build/bdist.linux-armv7l/wheel/rattleSNP-1.1.0.dist-info/WHEEL
2023-02-27T10:44:06,758   creating '/tmp/pip-wheel-sb8yxrnc/.tmp-ty49a7lz/rattleSNP-1.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-02-27T10:44:06,761   adding 'rattleSNP/VERSION'
2023-02-27T10:44:06,763   adding 'rattleSNP/__init__.py'
2023-02-27T10:44:06,764   adding 'rattleSNP/_version.py'
2023-02-27T10:44:06,765   adding 'rattleSNP/global_variables.py'
2023-02-27T10:44:06,766   adding 'rattleSNP/main.py'
2023-02-27T10:44:06,767   adding 'rattleSNP/rattleSNP-complete.sh'
2023-02-27T10:44:06,809   adding 'rattleSNP/rattleSNP_logo.png'
2023-02-27T10:44:06,818   adding 'rattleSNP/snakemake_module.py'
2023-02-27T10:44:06,820   adding 'rattleSNP/containers/Dockerfile_test'
2023-02-27T10:44:06,821   adding 'rattleSNP/containers/Singularity.rattleSNP_tools.def'
2023-02-27T10:44:06,823   adding 'rattleSNP/containers/Singularity.report.def'
2023-02-27T10:44:06,824   adding 'rattleSNP/default_profile/CookieCutter.py'
2023-02-27T10:44:06,826   adding 'rattleSNP/default_profile/slurm-sidecar.py'
2023-02-27T10:44:06,828   adding 'rattleSNP/default_profile/slurm-status.py'
2023-02-27T10:44:06,829   adding 'rattleSNP/default_profile/slurm-submit.py'
2023-02-27T10:44:06,831   adding 'rattleSNP/default_profile/slurm_utils.py'
2023-02-27T10:44:06,833   adding 'rattleSNP/install_files/cluster_config_SLURM.yaml'
2023-02-27T10:44:06,834   adding 'rattleSNP/install_files/config.yaml'
2023-02-27T10:44:06,836   adding 'rattleSNP/install_files/tools_path.yaml'
2023-02-27T10:44:06,838   adding 'rattleSNP/install_files/config_test/config_CMSR.yaml'
2023-02-27T10:44:06,839   adding 'rattleSNP/scripts/__init__.py'
2023-02-27T10:44:06,841   adding 'rattleSNP/scripts/vcf2geno.py'
2023-02-27T10:44:06,844   adding 'rattleSNP/scripts/vcf2phylip.py'
2023-02-27T10:44:06,848   adding 'rattleSNP/snakefiles/Snakefile'
2023-02-27T10:44:06,850   adding 'rattleSNP/snakefiles/mapping_stat.snake'
2023-02-27T10:44:06,852   adding 'rattleSNP/snakemake_scripts/rattleSNP_module.py'
2023-02-27T10:44:06,853   adding 'rattleSNP/snakemake_scripts/report.Rmd'
2023-02-27T10:44:06,856   adding 'rattleSNP/snakemake_scripts/report_vcf.Rmd'
2023-02-27T10:44:06,863   adding 'rattleSNP-1.1.0.dist-info/LICENCE'
2023-02-27T10:44:06,870   adding 'rattleSNP-1.1.0.dist-info/METADATA'
2023-02-27T10:44:06,872   adding 'rattleSNP-1.1.0.dist-info/WHEEL'
2023-02-27T10:44:06,873   adding 'rattleSNP-1.1.0.dist-info/entry_points.txt'
2023-02-27T10:44:06,874   adding 'rattleSNP-1.1.0.dist-info/top_level.txt'
2023-02-27T10:44:06,875   adding 'rattleSNP-1.1.0.dist-info/RECORD'
2023-02-27T10:44:06,880   removing build/bdist.linux-armv7l/wheel
2023-02-27T10:44:07,005   Building wheel for rattlesnp (pyproject.toml): finished with status 'done'
2023-02-27T10:44:07,017   Created wheel for rattlesnp: filename=rattleSNP-1.1.0-py3-none-any.whl size=240603 sha256=87383a28b1cb733371175777f5c4fbbd3a317e224daad475a62067d6b1db04b3
2023-02-27T10:44:07,018   Stored in directory: /tmp/pip-ephem-wheel-cache-odmrpeuh/wheels/2b/40/4f/d976bc76d9ac935c6a015ffccb8d5f3a7e2981cef3f1314341
2023-02-27T10:44:07,037 Successfully built rattlesnp
2023-02-27T10:44:07,048 Removed build tracker: '/tmp/pip-build-tracker-nsyepbnd'