2023-02-27T11:58:42,565 Created temporary directory: /tmp/pip-ephem-wheel-cache-yhlmnrr9 2023-02-27T11:58:42,571 Created temporary directory: /tmp/pip-build-tracker-0afrbot7 2023-02-27T11:58:42,573 Initialized build tracking at /tmp/pip-build-tracker-0afrbot7 2023-02-27T11:58:42,574 Created build tracker: /tmp/pip-build-tracker-0afrbot7 2023-02-27T11:58:42,576 Entered build tracker: /tmp/pip-build-tracker-0afrbot7 2023-02-27T11:58:42,578 Created temporary directory: /tmp/pip-wheel-lzovu3vm 2023-02-27T11:58:42,590 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-27T11:58:42,594 Created temporary directory: /tmp/pip-ephem-wheel-cache-5cz47e4i 2023-02-27T11:58:42,629 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-27T11:58:42,633 2 location(s) to search for versions of relion: 2023-02-27T11:58:42,633 * https://pypi.org/simple/relion/ 2023-02-27T11:58:42,633 * https://www.piwheels.org/simple/relion/ 2023-02-27T11:58:42,633 Fetching project page and analyzing links: https://pypi.org/simple/relion/ 2023-02-27T11:58:42,634 Getting page https://pypi.org/simple/relion/ 2023-02-27T11:58:42,636 Found index url https://pypi.org/simple 2023-02-27T11:58:42,703 Fetched page https://pypi.org/simple/relion/ as application/vnd.pypi.simple.v1+json 2023-02-27T11:58:42,748 Skipping link: No binaries permitted for relion: 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2023-02-27T11:58:42,756 Skipping link: No binaries permitted for relion: https://files.pythonhosted.org/packages/f9/7c/f7b5d5cc96b0eca7206a6639a3e2f01e68d7d4db763e226e2d53a2e37565/relion-0.3.1-py3-none-any.whl (from https://pypi.org/simple/relion/) (requires-python:>=3.6) 2023-02-27T11:58:42,757 Found link https://files.pythonhosted.org/packages/9c/37/3583f271d8a5957d92ee1aa2e3d650b47999f686a210c6353c2e7fe7e06e/relion-0.3.1.tar.gz (from https://pypi.org/simple/relion/) (requires-python:>=3.6), version: 0.3.1 2023-02-27T11:58:42,758 Skipping link: No binaries permitted for relion: https://files.pythonhosted.org/packages/ac/03/74089ec74885f3505b78b69e3004da050896dd806ae778cde66aeb2cff3d/relion-0.3.2-py3-none-any.whl (from https://pypi.org/simple/relion/) (requires-python:>=3.6) 2023-02-27T11:58:42,759 Found link https://files.pythonhosted.org/packages/31/a5/ddd4777af0c3a0150c267fdd1e13ec4054a13f598e4dd89386ab3bd69399/relion-0.3.2.tar.gz (from https://pypi.org/simple/relion/) 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2023-02-27T11:58:42,772 Found link https://files.pythonhosted.org/packages/f2/21/e9a407cd3cb5529c588396b553b1b329b32155d8b3a91d9d4ca872f33c63/relion-0.4.4.tar.gz (from https://pypi.org/simple/relion/) (requires-python:>=3.6), version: 0.4.4 2023-02-27T11:58:42,773 Skipping link: No binaries permitted for relion: https://files.pythonhosted.org/packages/15/bd/9a6d8865a437c2c11ab9526272fb4d1397f8519c90fc51b17b44f10d5c69/relion-0.4.5-py3-none-any.whl (from https://pypi.org/simple/relion/) (requires-python:>=3.6) 2023-02-27T11:58:42,773 Found link https://files.pythonhosted.org/packages/ed/94/59b7db1506cbb3d91a57319887f88d2460fa9549a19768adc2c0a3baa912/relion-0.4.5.tar.gz (from https://pypi.org/simple/relion/) (requires-python:>=3.6), version: 0.4.5 2023-02-27T11:58:42,774 Skipping link: No binaries permitted for relion: https://files.pythonhosted.org/packages/9a/f7/15a18e0b95b7eea7178dd0aea6beebe79d683c50dae0a8d80df651d4e727/relion-0.4.6-py3-none-any.whl (from 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2023-02-27T11:58:42,783 Skipping link: No binaries permitted for relion: https://files.pythonhosted.org/packages/9c/e6/028d16d0dafc15704307c514fc7d45e7535bf082f184d6e4f97cac398b2b/relion-0.4.12-py3-none-any.whl (from https://pypi.org/simple/relion/) (requires-python:>=3.6) 2023-02-27T11:58:42,784 Found link https://files.pythonhosted.org/packages/39/43/d277d02dc7c862cc6944d3792a41eadd3b7c71a634c2ae73a4a5665c0375/relion-0.4.12.tar.gz (from https://pypi.org/simple/relion/) (requires-python:>=3.6), version: 0.4.12 2023-02-27T11:58:42,785 Skipping link: No binaries permitted for relion: https://files.pythonhosted.org/packages/1d/17/0779d13e44fdb0fdb61bc7fe2319bcd3fa6779bdeef69be91a55f737018e/relion-0.4.13-py3-none-any.whl (from https://pypi.org/simple/relion/) (requires-python:>=3.6) 2023-02-27T11:58:42,786 Found link https://files.pythonhosted.org/packages/7a/84/cf2a8353268edcaa46b30919526f70048c3908ba5558d05a60da55411ee9/relion-0.4.13.tar.gz (from https://pypi.org/simple/relion/) 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(requires-python:>=3.8) 2023-02-27T11:58:42,923 Found link https://files.pythonhosted.org/packages/4b/37/f66a4700cd850cbff999cd613e987237e9caf1598e7d510ec394a1ff9337/relion-0.10.27.tar.gz (from https://pypi.org/simple/relion/) (requires-python:>=3.8), version: 0.10.27 2023-02-27T11:58:42,923 Skipping link: No binaries permitted for relion: https://files.pythonhosted.org/packages/87/2f/7d92023b11c39d9ae72f8c6eea42cecc5e45cb2f806fb717b379507c24ad/relion-0.10.28-py3-none-any.whl (from https://pypi.org/simple/relion/) (requires-python:>=3.8) 2023-02-27T11:58:42,924 Found link https://files.pythonhosted.org/packages/58/a9/79b748d7c16fefeefafbb129167ba8438e95c2e7dcf53a6109829b5bace6/relion-0.10.28.tar.gz (from https://pypi.org/simple/relion/) (requires-python:>=3.8), version: 0.10.28 2023-02-27T11:58:42,925 Fetching project page and analyzing links: https://www.piwheels.org/simple/relion/ 2023-02-27T11:58:42,926 Getting page https://www.piwheels.org/simple/relion/ 2023-02-27T11:58:42,927 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https://www.piwheels.org/simple/relion/relion-0.4.1-py3-none-any.whl#sha256=be9f6ca0dc84b2c1ad9128ad001ee3187bc3d15aa9ccd65cb1a35f85fbf0ef8b (from https://www.piwheels.org/simple/relion/) (requires-python:>=3.6) 2023-02-27T11:58:43,182 Skipping link: No binaries permitted for relion: https://www.piwheels.org/simple/relion/relion-0.4.0-py3-none-any.whl#sha256=a62f613b85ca29a734a7e327710886a0b504abf31dc19e158a7c553ffaaa27ca (from https://www.piwheels.org/simple/relion/) (requires-python:>=3.6) 2023-02-27T11:58:43,182 Skipping link: No binaries permitted for relion: https://www.piwheels.org/simple/relion/relion-0.3.3-py3-none-any.whl#sha256=8f8a5c783940d43765c8ce18fc6ca9df5a448f888261c00fdaeffe8026326cf2 (from https://www.piwheels.org/simple/relion/) (requires-python:>=3.6) 2023-02-27T11:58:43,183 Skipping link: No binaries permitted for relion: https://www.piwheels.org/simple/relion/relion-0.3.2-py3-none-any.whl#sha256=cd54925858411d45e45c2ce6a3e4fb5a5f09b73a543edec14b09c267a45a77f0 (from https://www.piwheels.org/simple/relion/) (requires-python:>=3.6) 2023-02-27T11:58:43,183 Skipping link: No binaries permitted for relion: https://www.piwheels.org/simple/relion/relion-0.3.1-py3-none-any.whl#sha256=c5ccfeea88962746b7e5fd0e70838bf6e66c43d16cc2091945e7d1aa0d983a72 (from https://www.piwheels.org/simple/relion/) (requires-python:>=3.6) 2023-02-27T11:58:43,183 Skipping link: No binaries permitted for relion: https://www.piwheels.org/simple/relion/relion-0.3.0-py3-none-any.whl#sha256=6127a2215d23fdbd3a43cc43eb5827b2c91038c9d289788778bb9c387dde52b4 (from https://www.piwheels.org/simple/relion/) (requires-python:>=3.6) 2023-02-27T11:58:43,183 Skipping link: No binaries permitted for relion: https://www.piwheels.org/simple/relion/relion-0.2.0-py3-none-any.whl#sha256=6779c0a4d4ae1b4284ac7ff6f37976c1305e3706567bb89d6ff8ed860a16ba2a (from https://www.piwheels.org/simple/relion/) (requires-python:>=3.6) 2023-02-27T11:58:43,184 Skipping link: No binaries permitted for relion: https://www.piwheels.org/simple/relion/relion-0.1.0-py3-none-any.whl#sha256=972794377b903c69e924a90476376af08e585baf66a956cda343d5c74c20d7ba (from https://www.piwheels.org/simple/relion/) (requires-python:>=3.6) 2023-02-27T11:58:43,184 Skipping link: No binaries permitted for relion: https://www.piwheels.org/simple/relion/relion-0.0.1-py2.py3-none-any.whl#sha256=9a322b10951bd180d61cdaaa163cc4823057d899b104628ac5e0cadebff0818e (from https://www.piwheels.org/simple/relion/) (requires-python:>=3.5) 2023-02-27T11:58:43,184 Skipping link: not a file: https://www.piwheels.org/simple/relion/ 2023-02-27T11:58:43,185 Skipping link: not a file: https://pypi.org/simple/relion/ 2023-02-27T11:58:43,224 Given no hashes to check 1 links for project 'relion': discarding no candidates 2023-02-27T11:58:43,250 Collecting relion==0.10.28 2023-02-27T11:58:43,253 Created temporary directory: /tmp/pip-unpack-w9k6hd6g 2023-02-27T11:58:43,463 Downloading relion-0.10.28.tar.gz (114 kB) 2023-02-27T11:58:43,784 Added relion==0.10.28 from https://files.pythonhosted.org/packages/58/a9/79b748d7c16fefeefafbb129167ba8438e95c2e7dcf53a6109829b5bace6/relion-0.10.28.tar.gz to build tracker '/tmp/pip-build-tracker-0afrbot7' 2023-02-27T11:58:43,791 Created temporary directory: /tmp/pip-build-env-hyhcxxn3 2023-02-27T11:58:43,805 Installing build dependencies: started 2023-02-27T11:58:43,807 Running command pip subprocess to install build dependencies 2023-02-27T11:58:45,650 Using pip 23.0.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-02-27T11:58:46,486 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-27T11:58:46,525 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-27T11:58:48,805 Collecting setuptools>=40.6.0 2023-02-27T11:58:48,953 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.4.0-py3-none-any.whl (1.1 MB) 2023-02-27T11:58:49,375 Collecting wheel 2023-02-27T11:58:49,400 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2023-02-27T11:58:52,069 Installing collected packages: wheel, setuptools 2023-02-27T11:58:52,313 Creating /tmp/pip-build-env-hyhcxxn3/overlay/bin 2023-02-27T11:58:52,316 changing mode of /tmp/pip-build-env-hyhcxxn3/overlay/bin/wheel to 755 2023-02-27T11:58:55,545 Successfully installed setuptools-67.4.0 wheel-0.38.4 2023-02-27T11:58:56,225 Installing build dependencies: finished with status 'done' 2023-02-27T11:58:56,234 Getting requirements to build wheel: started 2023-02-27T11:58:56,235 Running command Getting requirements to build wheel 2023-02-27T11:58:57,007 /tmp/pip-build-env-hyhcxxn3/overlay/lib/python3.9/site-packages/setuptools/dist.py:788: UserWarning: Usage of dash-separated 'project-urls' will not be supported in future versions. Please use the underscore name 'project_urls' instead 2023-02-27T11:58:57,008 warnings.warn( 2023-02-27T11:58:57,072 /tmp/pip-build-env-hyhcxxn3/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:520: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2023-02-27T11:58:57,073 warnings.warn(msg, warning_class) 2023-02-27T11:58:57,248 running egg_info 2023-02-27T11:58:57,255 writing src/relion.egg-info/PKG-INFO 2023-02-27T11:58:57,258 writing dependency_links to src/relion.egg-info/dependency_links.txt 2023-02-27T11:58:57,263 writing entry points to src/relion.egg-info/entry_points.txt 2023-02-27T11:58:57,265 writing requirements to src/relion.egg-info/requires.txt 2023-02-27T11:58:57,267 writing top-level names to src/relion.egg-info/top_level.txt 2023-02-27T11:58:57,312 reading manifest file 'src/relion.egg-info/SOURCES.txt' 2023-02-27T11:58:57,319 adding license file 'LICENSE' 2023-02-27T11:58:57,329 writing manifest file 'src/relion.egg-info/SOURCES.txt' 2023-02-27T11:58:57,425 Getting requirements to build wheel: finished with status 'done' 2023-02-27T11:58:57,437 Created temporary directory: /tmp/pip-modern-metadata-5i38bhvw 2023-02-27T11:58:57,440 Preparing metadata (pyproject.toml): started 2023-02-27T11:58:57,442 Running command Preparing metadata (pyproject.toml) 2023-02-27T11:58:58,181 /tmp/pip-build-env-hyhcxxn3/overlay/lib/python3.9/site-packages/setuptools/dist.py:788: UserWarning: Usage of dash-separated 'project-urls' will not be supported in future versions. Please use the underscore name 'project_urls' instead 2023-02-27T11:58:58,182 warnings.warn( 2023-02-27T11:58:58,245 /tmp/pip-build-env-hyhcxxn3/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:520: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2023-02-27T11:58:58,245 warnings.warn(msg, warning_class) 2023-02-27T11:58:58,276 running dist_info 2023-02-27T11:58:58,307 creating /tmp/pip-modern-metadata-5i38bhvw/relion.egg-info 2023-02-27T11:58:58,317 writing /tmp/pip-modern-metadata-5i38bhvw/relion.egg-info/PKG-INFO 2023-02-27T11:58:58,321 writing dependency_links to /tmp/pip-modern-metadata-5i38bhvw/relion.egg-info/dependency_links.txt 2023-02-27T11:58:58,325 writing entry points to /tmp/pip-modern-metadata-5i38bhvw/relion.egg-info/entry_points.txt 2023-02-27T11:58:58,328 writing requirements to /tmp/pip-modern-metadata-5i38bhvw/relion.egg-info/requires.txt 2023-02-27T11:58:58,329 writing top-level names to /tmp/pip-modern-metadata-5i38bhvw/relion.egg-info/top_level.txt 2023-02-27T11:58:58,332 writing manifest file '/tmp/pip-modern-metadata-5i38bhvw/relion.egg-info/SOURCES.txt' 2023-02-27T11:58:58,367 reading manifest file '/tmp/pip-modern-metadata-5i38bhvw/relion.egg-info/SOURCES.txt' 2023-02-27T11:58:58,371 adding license file 'LICENSE' 2023-02-27T11:58:58,376 writing manifest file '/tmp/pip-modern-metadata-5i38bhvw/relion.egg-info/SOURCES.txt' 2023-02-27T11:58:58,377 creating '/tmp/pip-modern-metadata-5i38bhvw/relion-0.10.28.dist-info' 2023-02-27T11:58:58,754 Preparing metadata (pyproject.toml): finished with status 'done' 2023-02-27T11:58:58,765 Source in /tmp/pip-wheel-lzovu3vm/relion_75e587a10d834720bf16c28e284d48ee has version 0.10.28, which satisfies requirement relion==0.10.28 from https://files.pythonhosted.org/packages/58/a9/79b748d7c16fefeefafbb129167ba8438e95c2e7dcf53a6109829b5bace6/relion-0.10.28.tar.gz 2023-02-27T11:58:58,767 Removed relion==0.10.28 from https://files.pythonhosted.org/packages/58/a9/79b748d7c16fefeefafbb129167ba8438e95c2e7dcf53a6109829b5bace6/relion-0.10.28.tar.gz from build tracker '/tmp/pip-build-tracker-0afrbot7' 2023-02-27T11:58:58,778 Created temporary directory: /tmp/pip-unpack-thgf9p7p 2023-02-27T11:58:58,778 Building wheels for collected packages: relion 2023-02-27T11:58:58,786 Created temporary directory: /tmp/pip-wheel-3a_czhgg 2023-02-27T11:58:58,786 Destination directory: /tmp/pip-wheel-3a_czhgg 2023-02-27T11:58:58,790 Building wheel for relion (pyproject.toml): started 2023-02-27T11:58:58,792 Running command Building wheel for relion (pyproject.toml) 2023-02-27T11:58:59,760 /tmp/pip-build-env-hyhcxxn3/overlay/lib/python3.9/site-packages/setuptools/dist.py:788: UserWarning: Usage of dash-separated 'project-urls' will not be supported in future versions. Please use the underscore name 'project_urls' instead 2023-02-27T11:58:59,761 warnings.warn( 2023-02-27T11:58:59,822 /tmp/pip-build-env-hyhcxxn3/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:520: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2023-02-27T11:58:59,822 warnings.warn(msg, warning_class) 2023-02-27T11:59:00,029 running bdist_wheel 2023-02-27T11:59:00,091 running build 2023-02-27T11:59:00,092 running build_py 2023-02-27T11:59:00,115 creating build 2023-02-27T11:59:00,116 creating build/lib 2023-02-27T11:59:00,117 creating build/lib/relion 2023-02-27T11:59:00,119 copying src/relion/__init__.py -> build/lib/relion 2023-02-27T11:59:00,123 copying src/relion/parse_project.py -> build/lib/relion 2023-02-27T11:59:00,128 creating build/lib/relion/dbmodel 2023-02-27T11:59:00,129 copying src/relion/dbmodel/__init__.py -> build/lib/relion/dbmodel 2023-02-27T11:59:00,134 copying src/relion/dbmodel/dbnode.py -> build/lib/relion/dbmodel 2023-02-27T11:59:00,138 copying src/relion/dbmodel/modeltables.py -> build/lib/relion/dbmodel 2023-02-27T11:59:00,142 copying src/relion/dbmodel/dbgraph.py -> build/lib/relion/dbmodel 2023-02-27T11:59:00,147 creating build/lib/relion/zocalo 2023-02-27T11:59:00,148 copying src/relion/zocalo/motioncorr.py -> build/lib/relion/zocalo 2023-02-27T11:59:00,153 copying src/relion/zocalo/__init__.py -> build/lib/relion/zocalo 2023-02-27T11:59:00,155 copying src/relion/zocalo/alchemy.py -> build/lib/relion/zocalo 2023-02-27T11:59:00,158 copying src/relion/zocalo/images_service_plugin.py -> build/lib/relion/zocalo 2023-02-27T11:59:00,163 copying src/relion/zocalo/cryolo.py -> build/lib/relion/zocalo 2023-02-27T11:59:00,167 copying src/relion/zocalo/ctffind.py -> build/lib/relion/zocalo 2023-02-27T11:59:00,173 copying src/relion/zocalo/tomo_align.py -> build/lib/relion/zocalo 2023-02-27T11:59:00,179 copying src/relion/zocalo/service.py -> build/lib/relion/zocalo 2023-02-27T11:59:00,182 copying src/relion/zocalo/wrapper.py -> build/lib/relion/zocalo 2023-02-27T11:59:00,187 creating build/lib/relion/_parser 2023-02-27T11:59:00,188 copying src/relion/_parser/processnode.py -> build/lib/relion/_parser 2023-02-27T11:59:00,191 copying src/relion/_parser/autopick.py -> build/lib/relion/_parser 2023-02-27T11:59:00,195 copying src/relion/_parser/processgraph.py -> build/lib/relion/_parser 2023-02-27T11:59:00,198 copying src/relion/_parser/class3D.py -> build/lib/relion/_parser 2023-02-27T11:59:00,202 copying src/relion/_parser/__init__.py -> build/lib/relion/_parser 2023-02-27T11:59:00,206 copying src/relion/_parser/motioncorrection.py -> build/lib/relion/_parser 2023-02-27T11:59:00,210 copying src/relion/_parser/initialmodel.py -> build/lib/relion/_parser 2023-02-27T11:59:00,213 copying src/relion/_parser/class2D.py -> build/lib/relion/_parser 2023-02-27T11:59:00,217 copying src/relion/_parser/cryolo.py -> build/lib/relion/_parser 2023-02-27T11:59:00,221 copying src/relion/_parser/ctffind.py -> build/lib/relion/_parser 2023-02-27T11:59:00,224 copying src/relion/_parser/relativeicethickness.py -> build/lib/relion/_parser 2023-02-27T11:59:00,227 copying src/relion/_parser/relion_pipeline.py -> build/lib/relion/_parser 2023-02-27T11:59:00,232 copying src/relion/_parser/jobtype.py -> build/lib/relion/_parser 2023-02-27T11:59:00,235 creating build/lib/relion/node 2023-02-27T11:59:00,237 copying src/relion/node/__init__.py -> build/lib/relion/node 2023-02-27T11:59:00,241 copying src/relion/node/environment.py -> build/lib/relion/node 2023-02-27T11:59:00,244 copying src/relion/node/graph.py -> build/lib/relion/node 2023-02-27T11:59:00,249 creating build/lib/relion/pipeline 2023-02-27T11:59:00,250 copying src/relion/pipeline/__init__.py -> build/lib/relion/pipeline 2023-02-27T11:59:00,255 copying src/relion/pipeline/options.py -> build/lib/relion/pipeline 2023-02-27T11:59:00,259 copying src/relion/pipeline/refine.py -> build/lib/relion/pipeline 2023-02-27T11:59:00,262 copying src/relion/pipeline/extra_options.py -> build/lib/relion/pipeline 2023-02-27T11:59:00,269 creating build/lib/relion/cryolo_relion_it 2023-02-27T11:59:00,271 copying src/relion/cryolo_relion_it/icebreaker_histogram.py -> build/lib/relion/cryolo_relion_it 2023-02-27T11:59:00,277 copying src/relion/cryolo_relion_it/__init__.py -> build/lib/relion/cryolo_relion_it 2023-02-27T11:59:00,282 copying src/relion/cryolo_relion_it/cryolo_external_job.py -> build/lib/relion/cryolo_relion_it 2023-02-27T11:59:00,289 copying src/relion/cryolo_relion_it/select_and_split_external_job.py -> build/lib/relion/cryolo_relion_it 2023-02-27T11:59:00,292 copying src/relion/cryolo_relion_it/fsc_fitting_external_job.py -> build/lib/relion/cryolo_relion_it 2023-02-27T11:59:00,294 copying src/relion/cryolo_relion_it/cryolo_relion_it.py -> build/lib/relion/cryolo_relion_it 2023-02-27T11:59:00,305 copying src/relion/cryolo_relion_it/dls_options.py -> build/lib/relion/cryolo_relion_it 2023-02-27T11:59:00,308 copying src/relion/cryolo_relion_it/mask_soft_edge_external_job.py -> build/lib/relion/cryolo_relion_it 2023-02-27T11:59:00,310 copying src/relion/cryolo_relion_it/reconstruct_halves_external_job.py -> build/lib/relion/cryolo_relion_it 2023-02-27T11:59:00,313 copying src/relion/cryolo_relion_it/cryolo_fine_tune_job.py -> build/lib/relion/cryolo_relion_it 2023-02-27T11:59:00,317 creating build/lib/relion/cli 2023-02-27T11:59:00,318 copying src/relion/cli/project_linker.py -> build/lib/relion/cli 2023-02-27T11:59:00,320 copying src/relion/cli/__init__.py -> build/lib/relion/cli 2023-02-27T11:59:00,322 copying src/relion/cli/refine_pipeline.py -> build/lib/relion/cli 2023-02-27T11:59:00,325 copying src/relion/cli/current_job.py -> build/lib/relion/cli 2023-02-27T11:59:00,328 copying src/relion/cli/run_pipeline.py -> build/lib/relion/cli 2023-02-27T11:59:00,331 copying src/relion/cli/pipeline_viewer.py -> build/lib/relion/cli 2023-02-27T11:59:00,334 copying src/relion/cli/print_default_options.py -> build/lib/relion/cli 2023-02-27T11:59:00,336 running egg_info 2023-02-27T11:59:00,371 writing src/relion.egg-info/PKG-INFO 2023-02-27T11:59:00,374 writing dependency_links to src/relion.egg-info/dependency_links.txt 2023-02-27T11:59:00,377 writing entry points to src/relion.egg-info/entry_points.txt 2023-02-27T11:59:00,379 writing requirements to src/relion.egg-info/requires.txt 2023-02-27T11:59:00,380 writing top-level names to src/relion.egg-info/top_level.txt 2023-02-27T11:59:00,399 reading manifest file 'src/relion.egg-info/SOURCES.txt' 2023-02-27T11:59:00,403 adding license file 'LICENSE' 2023-02-27T11:59:00,409 writing manifest file 'src/relion.egg-info/SOURCES.txt' 2023-02-27T11:59:00,446 installing to build/bdist.linux-armv7l/wheel 2023-02-27T11:59:00,447 running install 2023-02-27T11:59:00,478 running install_lib 2023-02-27T11:59:00,489 creating build/bdist.linux-armv7l 2023-02-27T11:59:00,490 creating build/bdist.linux-armv7l/wheel 2023-02-27T11:59:00,494 creating build/bdist.linux-armv7l/wheel/relion 2023-02-27T11:59:00,497 creating build/bdist.linux-armv7l/wheel/relion/dbmodel 2023-02-27T11:59:00,498 copying build/lib/relion/dbmodel/__init__.py -> build/bdist.linux-armv7l/wheel/relion/dbmodel 2023-02-27T11:59:00,502 copying build/lib/relion/dbmodel/dbnode.py -> build/bdist.linux-armv7l/wheel/relion/dbmodel 2023-02-27T11:59:00,506 copying build/lib/relion/dbmodel/modeltables.py -> build/bdist.linux-armv7l/wheel/relion/dbmodel 2023-02-27T11:59:00,510 copying build/lib/relion/dbmodel/dbgraph.py -> build/bdist.linux-armv7l/wheel/relion/dbmodel 2023-02-27T11:59:00,514 creating build/bdist.linux-armv7l/wheel/relion/zocalo 2023-02-27T11:59:00,515 copying build/lib/relion/zocalo/motioncorr.py -> build/bdist.linux-armv7l/wheel/relion/zocalo 2023-02-27T11:59:00,520 copying build/lib/relion/zocalo/__init__.py -> build/bdist.linux-armv7l/wheel/relion/zocalo 2023-02-27T11:59:00,523 copying build/lib/relion/zocalo/alchemy.py -> build/bdist.linux-armv7l/wheel/relion/zocalo 2023-02-27T11:59:00,526 copying build/lib/relion/zocalo/images_service_plugin.py -> build/bdist.linux-armv7l/wheel/relion/zocalo 2023-02-27T11:59:00,530 copying build/lib/relion/zocalo/cryolo.py -> build/bdist.linux-armv7l/wheel/relion/zocalo 2023-02-27T11:59:00,534 copying build/lib/relion/zocalo/ctffind.py -> build/bdist.linux-armv7l/wheel/relion/zocalo 2023-02-27T11:59:00,538 copying build/lib/relion/zocalo/tomo_align.py -> build/bdist.linux-armv7l/wheel/relion/zocalo 2023-02-27T11:59:00,542 copying build/lib/relion/zocalo/service.py -> build/bdist.linux-armv7l/wheel/relion/zocalo 2023-02-27T11:59:00,545 copying build/lib/relion/zocalo/wrapper.py -> build/bdist.linux-armv7l/wheel/relion/zocalo 2023-02-27T11:59:00,552 creating build/bdist.linux-armv7l/wheel/relion/_parser 2023-02-27T11:59:00,553 copying build/lib/relion/_parser/processnode.py -> build/bdist.linux-armv7l/wheel/relion/_parser 2023-02-27T11:59:00,557 copying build/lib/relion/_parser/autopick.py -> build/bdist.linux-armv7l/wheel/relion/_parser 2023-02-27T11:59:00,563 copying build/lib/relion/_parser/processgraph.py -> build/bdist.linux-armv7l/wheel/relion/_parser 2023-02-27T11:59:00,567 copying build/lib/relion/_parser/class3D.py -> build/bdist.linux-armv7l/wheel/relion/_parser 2023-02-27T11:59:00,571 copying build/lib/relion/_parser/__init__.py -> build/bdist.linux-armv7l/wheel/relion/_parser 2023-02-27T11:59:00,573 copying build/lib/relion/_parser/motioncorrection.py -> build/bdist.linux-armv7l/wheel/relion/_parser 2023-02-27T11:59:00,577 copying build/lib/relion/_parser/initialmodel.py -> build/bdist.linux-armv7l/wheel/relion/_parser 2023-02-27T11:59:00,581 copying build/lib/relion/_parser/class2D.py -> build/bdist.linux-armv7l/wheel/relion/_parser 2023-02-27T11:59:00,584 copying build/lib/relion/_parser/cryolo.py -> build/bdist.linux-armv7l/wheel/relion/_parser 2023-02-27T11:59:00,588 copying build/lib/relion/_parser/ctffind.py -> build/bdist.linux-armv7l/wheel/relion/_parser 2023-02-27T11:59:00,593 copying build/lib/relion/_parser/relativeicethickness.py -> build/bdist.linux-armv7l/wheel/relion/_parser 2023-02-27T11:59:00,596 copying build/lib/relion/_parser/relion_pipeline.py -> build/bdist.linux-armv7l/wheel/relion/_parser 2023-02-27T11:59:00,601 copying build/lib/relion/_parser/jobtype.py -> build/bdist.linux-armv7l/wheel/relion/_parser 2023-02-27T11:59:00,604 copying build/lib/relion/__init__.py -> build/bdist.linux-armv7l/wheel/relion 2023-02-27T11:59:00,609 creating build/bdist.linux-armv7l/wheel/relion/node 2023-02-27T11:59:00,610 copying build/lib/relion/node/__init__.py -> build/bdist.linux-armv7l/wheel/relion/node 2023-02-27T11:59:00,614 copying build/lib/relion/node/environment.py -> build/bdist.linux-armv7l/wheel/relion/node 2023-02-27T11:59:00,618 copying build/lib/relion/node/graph.py -> build/bdist.linux-armv7l/wheel/relion/node 2023-02-27T11:59:00,623 creating build/bdist.linux-armv7l/wheel/relion/pipeline 2023-02-27T11:59:00,625 copying build/lib/relion/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/relion/pipeline 2023-02-27T11:59:00,631 copying build/lib/relion/pipeline/options.py -> build/bdist.linux-armv7l/wheel/relion/pipeline 2023-02-27T11:59:00,636 copying build/lib/relion/pipeline/refine.py -> build/bdist.linux-armv7l/wheel/relion/pipeline 2023-02-27T11:59:00,642 copying build/lib/relion/pipeline/extra_options.py -> build/bdist.linux-armv7l/wheel/relion/pipeline 2023-02-27T11:59:00,648 copying build/lib/relion/parse_project.py -> build/bdist.linux-armv7l/wheel/relion 2023-02-27T11:59:00,657 creating build/bdist.linux-armv7l/wheel/relion/cryolo_relion_it 2023-02-27T11:59:00,661 copying build/lib/relion/cryolo_relion_it/icebreaker_histogram.py -> build/bdist.linux-armv7l/wheel/relion/cryolo_relion_it 2023-02-27T11:59:00,669 copying build/lib/relion/cryolo_relion_it/__init__.py -> build/bdist.linux-armv7l/wheel/relion/cryolo_relion_it 2023-02-27T11:59:00,674 copying build/lib/relion/cryolo_relion_it/cryolo_external_job.py -> build/bdist.linux-armv7l/wheel/relion/cryolo_relion_it 2023-02-27T11:59:00,677 copying build/lib/relion/cryolo_relion_it/select_and_split_external_job.py -> build/bdist.linux-armv7l/wheel/relion/cryolo_relion_it 2023-02-27T11:59:00,680 copying build/lib/relion/cryolo_relion_it/fsc_fitting_external_job.py -> build/bdist.linux-armv7l/wheel/relion/cryolo_relion_it 2023-02-27T11:59:00,683 copying build/lib/relion/cryolo_relion_it/cryolo_relion_it.py -> build/bdist.linux-armv7l/wheel/relion/cryolo_relion_it 2023-02-27T11:59:00,691 copying build/lib/relion/cryolo_relion_it/dls_options.py -> build/bdist.linux-armv7l/wheel/relion/cryolo_relion_it 2023-02-27T11:59:00,694 copying build/lib/relion/cryolo_relion_it/mask_soft_edge_external_job.py -> build/bdist.linux-armv7l/wheel/relion/cryolo_relion_it 2023-02-27T11:59:00,697 copying build/lib/relion/cryolo_relion_it/reconstruct_halves_external_job.py -> build/bdist.linux-armv7l/wheel/relion/cryolo_relion_it 2023-02-27T11:59:00,699 copying build/lib/relion/cryolo_relion_it/cryolo_fine_tune_job.py -> build/bdist.linux-armv7l/wheel/relion/cryolo_relion_it 2023-02-27T11:59:00,705 creating build/bdist.linux-armv7l/wheel/relion/cli 2023-02-27T11:59:00,706 copying build/lib/relion/cli/project_linker.py -> build/bdist.linux-armv7l/wheel/relion/cli 2023-02-27T11:59:00,709 copying build/lib/relion/cli/__init__.py -> build/bdist.linux-armv7l/wheel/relion/cli 2023-02-27T11:59:00,711 copying build/lib/relion/cli/refine_pipeline.py -> build/bdist.linux-armv7l/wheel/relion/cli 2023-02-27T11:59:00,714 copying build/lib/relion/cli/current_job.py -> build/bdist.linux-armv7l/wheel/relion/cli 2023-02-27T11:59:00,716 copying build/lib/relion/cli/run_pipeline.py -> build/bdist.linux-armv7l/wheel/relion/cli 2023-02-27T11:59:00,719 copying build/lib/relion/cli/pipeline_viewer.py -> build/bdist.linux-armv7l/wheel/relion/cli 2023-02-27T11:59:00,722 copying build/lib/relion/cli/print_default_options.py -> build/bdist.linux-armv7l/wheel/relion/cli 2023-02-27T11:59:00,724 running install_egg_info 2023-02-27T11:59:00,739 Copying src/relion.egg-info to build/bdist.linux-armv7l/wheel/relion-0.10.28-py3.9.egg-info 2023-02-27T11:59:00,761 running install_scripts 2023-02-27T11:59:00,788 creating build/bdist.linux-armv7l/wheel/relion-0.10.28.dist-info/WHEEL 2023-02-27T11:59:00,792 creating '/tmp/pip-wheel-3a_czhgg/.tmp-gitfm4rh/relion-0.10.28-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-02-27T11:59:00,798 adding 'relion/__init__.py' 2023-02-27T11:59:00,801 adding 'relion/parse_project.py' 2023-02-27T11:59:00,803 adding 'relion/_parser/__init__.py' 2023-02-27T11:59:00,805 adding 'relion/_parser/autopick.py' 2023-02-27T11:59:00,807 adding 'relion/_parser/class2D.py' 2023-02-27T11:59:00,810 adding 'relion/_parser/class3D.py' 2023-02-27T11:59:00,812 adding 'relion/_parser/cryolo.py' 2023-02-27T11:59:00,814 adding 'relion/_parser/ctffind.py' 2023-02-27T11:59:00,816 adding 'relion/_parser/initialmodel.py' 2023-02-27T11:59:00,818 adding 'relion/_parser/jobtype.py' 2023-02-27T11:59:00,821 adding 'relion/_parser/motioncorrection.py' 2023-02-27T11:59:00,824 adding 'relion/_parser/processgraph.py' 2023-02-27T11:59:00,828 adding 'relion/_parser/processnode.py' 2023-02-27T11:59:00,833 adding 'relion/_parser/relativeicethickness.py' 2023-02-27T11:59:00,839 adding 'relion/_parser/relion_pipeline.py' 2023-02-27T11:59:00,844 adding 'relion/cli/__init__.py' 2023-02-27T11:59:00,846 adding 'relion/cli/current_job.py' 2023-02-27T11:59:00,847 adding 'relion/cli/pipeline_viewer.py' 2023-02-27T11:59:00,849 adding 'relion/cli/print_default_options.py' 2023-02-27T11:59:00,851 adding 'relion/cli/project_linker.py' 2023-02-27T11:59:00,853 adding 'relion/cli/refine_pipeline.py' 2023-02-27T11:59:00,856 adding 'relion/cli/run_pipeline.py' 2023-02-27T11:59:00,858 adding 'relion/cryolo_relion_it/__init__.py' 2023-02-27T11:59:00,861 adding 'relion/cryolo_relion_it/cryolo_external_job.py' 2023-02-27T11:59:00,864 adding 'relion/cryolo_relion_it/cryolo_fine_tune_job.py' 2023-02-27T11:59:00,887 adding 'relion/cryolo_relion_it/cryolo_relion_it.py' 2023-02-27T11:59:00,890 adding 'relion/cryolo_relion_it/dls_options.py' 2023-02-27T11:59:00,892 adding 'relion/cryolo_relion_it/fsc_fitting_external_job.py' 2023-02-27T11:59:00,894 adding 'relion/cryolo_relion_it/icebreaker_histogram.py' 2023-02-27T11:59:00,896 adding 'relion/cryolo_relion_it/mask_soft_edge_external_job.py' 2023-02-27T11:59:00,899 adding 'relion/cryolo_relion_it/reconstruct_halves_external_job.py' 2023-02-27T11:59:00,901 adding 'relion/cryolo_relion_it/select_and_split_external_job.py' 2023-02-27T11:59:00,904 adding 'relion/dbmodel/__init__.py' 2023-02-27T11:59:00,906 adding 'relion/dbmodel/dbgraph.py' 2023-02-27T11:59:00,908 adding 'relion/dbmodel/dbnode.py' 2023-02-27T11:59:00,910 adding 'relion/dbmodel/modeltables.py' 2023-02-27T11:59:00,914 adding 'relion/node/__init__.py' 2023-02-27T11:59:00,916 adding 'relion/node/environment.py' 2023-02-27T11:59:00,918 adding 'relion/node/graph.py' 2023-02-27T11:59:00,924 adding 'relion/pipeline/__init__.py' 2023-02-27T11:59:00,926 adding 'relion/pipeline/extra_options.py' 2023-02-27T11:59:00,928 adding 'relion/pipeline/options.py' 2023-02-27T11:59:00,931 adding 'relion/pipeline/refine.py' 2023-02-27T11:59:00,934 adding 'relion/zocalo/__init__.py' 2023-02-27T11:59:00,936 adding 'relion/zocalo/alchemy.py' 2023-02-27T11:59:00,938 adding 'relion/zocalo/cryolo.py' 2023-02-27T11:59:00,940 adding 'relion/zocalo/ctffind.py' 2023-02-27T11:59:00,943 adding 'relion/zocalo/images_service_plugin.py' 2023-02-27T11:59:00,946 adding 'relion/zocalo/motioncorr.py' 2023-02-27T11:59:00,948 adding 'relion/zocalo/service.py' 2023-02-27T11:59:00,951 adding 'relion/zocalo/tomo_align.py' 2023-02-27T11:59:00,955 adding 'relion/zocalo/wrapper.py' 2023-02-27T11:59:00,963 adding 'relion-0.10.28.dist-info/LICENSE' 2023-02-27T11:59:00,964 adding 'relion-0.10.28.dist-info/METADATA' 2023-02-27T11:59:00,966 adding 'relion-0.10.28.dist-info/WHEEL' 2023-02-27T11:59:00,967 adding 'relion-0.10.28.dist-info/entry_points.txt' 2023-02-27T11:59:00,969 adding 'relion-0.10.28.dist-info/top_level.txt' 2023-02-27T11:59:00,970 adding 'relion-0.10.28.dist-info/RECORD' 2023-02-27T11:59:00,977 removing build/bdist.linux-armv7l/wheel 2023-02-27T11:59:01,138 Building wheel for relion (pyproject.toml): finished with status 'done' 2023-02-27T11:59:01,157 Created wheel for relion: filename=relion-0.10.28-py3-none-any.whl size=140858 sha256=22602455e0b78bd06f61b822fcafb8d0990106fa34a0ebb2d0abdde968a4aba6 2023-02-27T11:59:01,158 Stored in directory: /tmp/pip-ephem-wheel-cache-5cz47e4i/wheels/32/c2/64/daec10fcf82dc8ff247ed3179725ea532b210cc2afa332f4f5 2023-02-27T11:59:01,182 Successfully built relion 2023-02-27T11:59:01,203 Removed build tracker: '/tmp/pip-build-tracker-0afrbot7'