2023-03-01T23:59:01,450 Created temporary directory: /tmp/pip-ephem-wheel-cache-6sxrujfd 2023-03-01T23:59:01,452 Created temporary directory: /tmp/pip-build-tracker-lmgcbgky 2023-03-01T23:59:01,453 Initialized build tracking at /tmp/pip-build-tracker-lmgcbgky 2023-03-01T23:59:01,453 Created build tracker: /tmp/pip-build-tracker-lmgcbgky 2023-03-01T23:59:01,453 Entered build tracker: /tmp/pip-build-tracker-lmgcbgky 2023-03-01T23:59:01,454 Created temporary directory: /tmp/pip-wheel-lk0okjpm 2023-03-01T23:59:01,458 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-03-01T23:59:01,461 Created temporary directory: /tmp/pip-ephem-wheel-cache-lv96_geb 2023-03-01T23:59:01,486 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-03-01T23:59:01,489 2 location(s) to search for versions of superpang: 2023-03-01T23:59:01,489 * https://pypi.org/simple/superpang/ 2023-03-01T23:59:01,489 * https://www.piwheels.org/simple/superpang/ 2023-03-01T23:59:01,490 Fetching project page and analyzing links: https://pypi.org/simple/superpang/ 2023-03-01T23:59:01,490 Getting page https://pypi.org/simple/superpang/ 2023-03-01T23:59:01,492 Found index url https://pypi.org/simple 2023-03-01T23:59:01,545 Fetched page https://pypi.org/simple/superpang/ as application/vnd.pypi.simple.v1+json 2023-03-01T23:59:01,548 Found link https://files.pythonhosted.org/packages/9c/57/83a3974eb6f1728623e29d7fc3c5f3ccb0702c44d756e2b1f6f1b92798e1/SuperPang-0.7.0.post1.tar.gz (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.7.0.post1 2023-03-01T23:59:01,549 Found link https://files.pythonhosted.org/packages/e8/23/ca26f8c2506d465d8b8383c1b8b60d052a2f86b58de691502e328dc925b0/SuperPang-0.8.0.tar.gz (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.8.0 2023-03-01T23:59:01,549 Found link https://files.pythonhosted.org/packages/4a/4f/ece0df30b902a9e6ff8d63632251d4c67ecd909cd7bde08a142d56a24880/SuperPang-0.8.1.tar.gz (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.8.1 2023-03-01T23:59:01,550 Found link https://files.pythonhosted.org/packages/fc/fb/e92ac7479a7f8edb9864ece82b66104ad145015cc3abc02a4a37c60c4e32/SuperPang-0.9.0.tar.gz (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.9.0 2023-03-01T23:59:01,550 Found link https://files.pythonhosted.org/packages/fa/30/f59e38f3c4cde22e00716f8478fbcbe73d4e0b7c4ac11bf7354f4682794f/SuperPang-0.9.1.tar.gz (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.9.1 2023-03-01T23:59:01,551 Found link https://files.pythonhosted.org/packages/7d/52/14b5e6e30655f1a4aa2fc6f1d66126075c5b8e9a204344f34ddf7f15300a/SuperPang-0.9.3.post1.tar.gz (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.9.3.post1 2023-03-01T23:59:01,552 Found link https://files.pythonhosted.org/packages/36/82/bb9265ecfc16b64ed3851e8f46d6c63fe91763416f59cc1cc39bb1db03c3/SuperPang-0.9.4b1.tar.gz (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.9.4b1 2023-03-01T23:59:01,552 Found link https://files.pythonhosted.org/packages/31/6c/17a442b028bf9c3e55011670d5d787513bcd761172b94bee703eeac53c77/SuperPang-0.9.4.tar.gz (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.9.4 2023-03-01T23:59:01,553 Found link https://files.pythonhosted.org/packages/c1/54/331e16a3c04b5e29d33ab3b4a2ca0e0f2eea68cc545f325f4181c41c3009/SuperPang-0.9.5.tar.gz (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.9.5 2023-03-01T23:59:01,553 Found link https://files.pythonhosted.org/packages/48/8e/57bc26eee0cbc2b81934e0b0b949baa13ceb6f906b5c0fd950a905ba7426/SuperPang-0.9.6.tar.gz (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.9.6 2023-03-01T23:59:01,554 Fetching project page and analyzing links: https://www.piwheels.org/simple/superpang/ 2023-03-01T23:59:01,554 Getting page https://www.piwheels.org/simple/superpang/ 2023-03-01T23:59:01,555 Found index url https://www.piwheels.org/simple 2023-03-01T23:59:01,750 Fetched page https://www.piwheels.org/simple/superpang/ as text/html 2023-03-01T23:59:01,753 Skipping link: No binaries permitted for superpang: https://www.piwheels.org/simple/superpang/SuperPang-0.7.0.post1-py3-none-any.whl#sha256=7b5427f75343e311a397b472cfed232b2549783866aa715ac6cee45857734501 (from https://www.piwheels.org/simple/superpang/) (requires-python:>=3.8) 2023-03-01T23:59:01,754 Skipping link: not a file: https://www.piwheels.org/simple/superpang/ 2023-03-01T23:59:01,754 Skipping link: not a file: https://pypi.org/simple/superpang/ 2023-03-01T23:59:01,797 Given no hashes to check 1 links for project 'superpang': discarding no candidates 2023-03-01T23:59:01,834 Collecting superpang==0.9.6 2023-03-01T23:59:01,838 Created temporary directory: /tmp/pip-unpack-eo1vuhfd 2023-03-01T23:59:02,223 Downloading SuperPang-0.9.6.tar.gz (6.3 MB) 2023-03-01T23:59:04,461 Added superpang==0.9.6 from https://files.pythonhosted.org/packages/48/8e/57bc26eee0cbc2b81934e0b0b949baa13ceb6f906b5c0fd950a905ba7426/SuperPang-0.9.6.tar.gz to build tracker '/tmp/pip-build-tracker-lmgcbgky' 2023-03-01T23:59:04,463 Running setup.py (path:/tmp/pip-wheel-lk0okjpm/superpang_ad3bf4626d124333aa94cfe0b6565eda/setup.py) egg_info for package superpang 2023-03-01T23:59:04,463 Created temporary directory: /tmp/pip-pip-egg-info-ksp6c18g 2023-03-01T23:59:04,463 Preparing metadata (setup.py): started 2023-03-01T23:59:04,464 Running command python setup.py egg_info 2023-03-01T23:59:05,063 running egg_info 2023-03-01T23:59:05,064 creating /tmp/pip-pip-egg-info-ksp6c18g/SuperPang.egg-info 2023-03-01T23:59:05,089 writing /tmp/pip-pip-egg-info-ksp6c18g/SuperPang.egg-info/PKG-INFO 2023-03-01T23:59:05,091 writing dependency_links to /tmp/pip-pip-egg-info-ksp6c18g/SuperPang.egg-info/dependency_links.txt 2023-03-01T23:59:05,094 writing requirements to /tmp/pip-pip-egg-info-ksp6c18g/SuperPang.egg-info/requires.txt 2023-03-01T23:59:05,095 writing top-level names to /tmp/pip-pip-egg-info-ksp6c18g/SuperPang.egg-info/top_level.txt 2023-03-01T23:59:05,097 writing manifest file '/tmp/pip-pip-egg-info-ksp6c18g/SuperPang.egg-info/SOURCES.txt' 2023-03-01T23:59:05,401 reading manifest file '/tmp/pip-pip-egg-info-ksp6c18g/SuperPang.egg-info/SOURCES.txt' 2023-03-01T23:59:05,402 reading manifest template 'MANIFEST.in' 2023-03-01T23:59:05,405 adding license file 'LICENSE' 2023-03-01T23:59:05,407 writing manifest file '/tmp/pip-pip-egg-info-ksp6c18g/SuperPang.egg-info/SOURCES.txt' 2023-03-01T23:59:05,479 Preparing metadata (setup.py): finished with status 'done' 2023-03-01T23:59:05,485 Source in /tmp/pip-wheel-lk0okjpm/superpang_ad3bf4626d124333aa94cfe0b6565eda has version 0.9.6, which satisfies requirement superpang==0.9.6 from https://files.pythonhosted.org/packages/48/8e/57bc26eee0cbc2b81934e0b0b949baa13ceb6f906b5c0fd950a905ba7426/SuperPang-0.9.6.tar.gz 2023-03-01T23:59:05,486 Removed superpang==0.9.6 from https://files.pythonhosted.org/packages/48/8e/57bc26eee0cbc2b81934e0b0b949baa13ceb6f906b5c0fd950a905ba7426/SuperPang-0.9.6.tar.gz from build tracker '/tmp/pip-build-tracker-lmgcbgky' 2023-03-01T23:59:05,493 Created temporary directory: /tmp/pip-unpack-qnt2x9f7 2023-03-01T23:59:05,494 Building wheels for collected packages: superpang 2023-03-01T23:59:05,498 Created temporary directory: /tmp/pip-wheel-tradx8ul 2023-03-01T23:59:05,499 Building wheel for superpang (setup.py): started 2023-03-01T23:59:05,500 Destination directory: /tmp/pip-wheel-tradx8ul 2023-03-01T23:59:05,500 Running command python setup.py bdist_wheel 2023-03-01T23:59:06,372 running bdist_wheel 2023-03-01T23:59:06,642 running build 2023-03-01T23:59:06,642 running build_py 2023-03-01T23:59:06,667 creating build 2023-03-01T23:59:06,667 creating build/lib.linux-armv7l-cpython-39 2023-03-01T23:59:06,668 creating build/lib.linux-armv7l-cpython-39/SuperPang 2023-03-01T23:59:06,669 copying SuperPang/__init__.py -> build/lib.linux-armv7l-cpython-39/SuperPang 2023-03-01T23:59:06,671 creating build/lib.linux-armv7l-cpython-39/SuperPang/lib 2023-03-01T23:59:06,672 copying SuperPang/lib/__init__.py -> build/lib.linux-armv7l-cpython-39/SuperPang/lib 2023-03-01T23:59:06,674 copying SuperPang/lib/Assembler.py -> build/lib.linux-armv7l-cpython-39/SuperPang/lib 2023-03-01T23:59:06,678 copying SuperPang/lib/utils.py -> build/lib.linux-armv7l-cpython-39/SuperPang/lib 2023-03-01T23:59:06,679 running egg_info 2023-03-01T23:59:06,731 writing SuperPang.egg-info/PKG-INFO 2023-03-01T23:59:06,735 writing dependency_links to SuperPang.egg-info/dependency_links.txt 2023-03-01T23:59:06,739 writing requirements to SuperPang.egg-info/requires.txt 2023-03-01T23:59:06,741 writing top-level names to SuperPang.egg-info/top_level.txt 2023-03-01T23:59:06,773 reading manifest file 'SuperPang.egg-info/SOURCES.txt' 2023-03-01T23:59:06,776 reading manifest template 'MANIFEST.in' 2023-03-01T23:59:06,778 adding license file 'LICENSE' 2023-03-01T23:59:06,781 writing manifest file 'SuperPang.egg-info/SOURCES.txt' 2023-03-01T23:59:06,783 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SuperPang.scripts' as data is deprecated, please list it in `packages`. 2023-03-01T23:59:06,783 !! 2023-03-01T23:59:06,784 ############################ 2023-03-01T23:59:06,784 # Package would be ignored # 2023-03-01T23:59:06,784 ############################ 2023-03-01T23:59:06,784 Python recognizes 'SuperPang.scripts' as an importable package, 2023-03-01T23:59:06,784 but it is not listed in the `packages` configuration of setuptools. 2023-03-01T23:59:06,784 'SuperPang.scripts' has been automatically added to the distribution only 2023-03-01T23:59:06,784 because it may contain data files, but this behavior is likely to change 2023-03-01T23:59:06,785 in future versions of setuptools (and therefore is considered deprecated). 2023-03-01T23:59:06,785 Please make sure that 'SuperPang.scripts' is included as a package by using 2023-03-01T23:59:06,785 the `packages` configuration field or the proper discovery methods 2023-03-01T23:59:06,785 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-01T23:59:06,785 instead of `find_packages(...)`/`find:`). 2023-03-01T23:59:06,785 You can read more about "package discovery" and "data files" on setuptools 2023-03-01T23:59:06,786 documentation page. 2023-03-01T23:59:06,786 !! 2023-03-01T23:59:06,786 check.warn(importable) 2023-03-01T23:59:06,786 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SuperPang.test_data' as data is deprecated, please list it in `packages`. 2023-03-01T23:59:06,787 !! 2023-03-01T23:59:06,787 ############################ 2023-03-01T23:59:06,787 # Package would be ignored # 2023-03-01T23:59:06,787 ############################ 2023-03-01T23:59:06,788 Python recognizes 'SuperPang.test_data' as an importable package, 2023-03-01T23:59:06,788 but it is not listed in the `packages` configuration of setuptools. 2023-03-01T23:59:06,788 'SuperPang.test_data' has been automatically added to the distribution only 2023-03-01T23:59:06,788 because it may contain data files, but this behavior is likely to change 2023-03-01T23:59:06,788 in future versions of setuptools (and therefore is considered deprecated). 2023-03-01T23:59:06,789 Please make sure that 'SuperPang.test_data' is included as a package by using 2023-03-01T23:59:06,789 the `packages` configuration field or the proper discovery methods 2023-03-01T23:59:06,789 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-01T23:59:06,789 instead of `find_packages(...)`/`find:`). 2023-03-01T23:59:06,789 You can read more about "package discovery" and "data files" on setuptools 2023-03-01T23:59:06,790 documentation page. 2023-03-01T23:59:06,790 !! 2023-03-01T23:59:06,790 check.warn(importable) 2023-03-01T23:59:06,791 copying SuperPang/VERSION -> build/lib.linux-armv7l-cpython-39/SuperPang 2023-03-01T23:59:06,791 creating build/lib.linux-armv7l-cpython-39/SuperPang/scripts 2023-03-01T23:59:06,791 copying SuperPang/scripts/SuperPang.py -> build/lib.linux-armv7l-cpython-39/SuperPang/scripts 2023-03-01T23:59:06,793 copying SuperPang/scripts/condense-edges.py -> build/lib.linux-armv7l-cpython-39/SuperPang/scripts 2023-03-01T23:59:06,796 copying SuperPang/scripts/homogenize.py -> build/lib.linux-armv7l-cpython-39/SuperPang/scripts 2023-03-01T23:59:06,799 copying SuperPang/scripts/test-SuperPang.py -> build/lib.linux-armv7l-cpython-39/SuperPang/scripts 2023-03-01T23:59:06,801 creating build/lib.linux-armv7l-cpython-39/SuperPang/test_data 2023-03-01T23:59:06,802 copying SuperPang/test_data/2636415981.fna -> build/lib.linux-armv7l-cpython-39/SuperPang/test_data 2023-03-01T23:59:06,854 copying SuperPang/test_data/2636416036.fna -> build/lib.linux-armv7l-cpython-39/SuperPang/test_data 2023-03-01T23:59:06,902 copying SuperPang/test_data/2636416061.fna -> build/lib.linux-armv7l-cpython-39/SuperPang/test_data 2023-03-01T23:59:06,959 copying SuperPang/test_data/2636416062.fna -> build/lib.linux-armv7l-cpython-39/SuperPang/test_data 2023-03-01T23:59:07,011 copying SuperPang/test_data/2639762512.fna -> build/lib.linux-armv7l-cpython-39/SuperPang/test_data 2023-03-01T23:59:07,062 copying SuperPang/test_data/2639762514.fna -> build/lib.linux-armv7l-cpython-39/SuperPang/test_data 2023-03-01T23:59:07,109 copying SuperPang/test_data/2639762515.fna -> build/lib.linux-armv7l-cpython-39/SuperPang/test_data 2023-03-01T23:59:07,160 copying SuperPang/test_data/2639762516.fna -> build/lib.linux-armv7l-cpython-39/SuperPang/test_data 2023-03-01T23:59:07,207 copying SuperPang/test_data/2844342787.fna -> build/lib.linux-armv7l-cpython-39/SuperPang/test_data 2023-03-01T23:59:07,266 copying SuperPang/lib/Compressor.c -> build/lib.linux-armv7l-cpython-39/SuperPang/lib 2023-03-01T23:59:07,289 running build_ext 2023-03-01T23:59:07,295 building 'SuperPang.lib.Compressor' extension 2023-03-01T23:59:07,296 creating build/temp.linux-armv7l-cpython-39 2023-03-01T23:59:07,297 creating build/temp.linux-armv7l-cpython-39/SuperPang 2023-03-01T23:59:07,297 creating build/temp.linux-armv7l-cpython-39/SuperPang/lib 2023-03-01T23:59:07,298 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c SuperPang/lib/Compressor.c -o build/temp.linux-armv7l-cpython-39/SuperPang/lib/Compressor.o 2023-03-01T23:59:07,683 SuperPang/lib/Compressor.c:711:10: fatal error: numpy/arrayobject.h: No such file or directory 2023-03-01T23:59:07,683 711 | #include "numpy/arrayobject.h" 2023-03-01T23:59:07,683 | ^~~~~~~~~~~~~~~~~~~~~ 2023-03-01T23:59:07,684 compilation terminated. 2023-03-01T23:59:07,689 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-03-01T23:59:07,785 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-03-01T23:59:07,803 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-03-01T23:59:07,803 exec(compile('"'"''"'"''"'"' 2023-03-01T23:59:07,803 # This is -- a caller that pip uses to run setup.py 2023-03-01T23:59:07,803 # 2023-03-01T23:59:07,803 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-03-01T23:59:07,803 # import from `distutils.core` to work with newer packaging standards. 2023-03-01T23:59:07,803 # - It provides a clear error message when setuptools is not installed. 2023-03-01T23:59:07,803 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-03-01T23:59:07,803 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-03-01T23:59:07,803 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-03-01T23:59:07,803 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-03-01T23:59:07,803 import os, sys, tokenize 2023-03-01T23:59:07,803 2023-03-01T23:59:07,803 try: 2023-03-01T23:59:07,803 import setuptools 2023-03-01T23:59:07,803 except ImportError as error: 2023-03-01T23:59:07,803 print( 2023-03-01T23:59:07,803 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-03-01T23:59:07,803 "the build environment.", 2023-03-01T23:59:07,803 file=sys.stderr, 2023-03-01T23:59:07,803 ) 2023-03-01T23:59:07,803 sys.exit(1) 2023-03-01T23:59:07,803 2023-03-01T23:59:07,803 __file__ = %r 2023-03-01T23:59:07,803 sys.argv[0] = __file__ 2023-03-01T23:59:07,803 2023-03-01T23:59:07,803 if os.path.exists(__file__): 2023-03-01T23:59:07,803 filename = __file__ 2023-03-01T23:59:07,803 with tokenize.open(__file__) as f: 2023-03-01T23:59:07,803 setup_py_code = f.read() 2023-03-01T23:59:07,803 else: 2023-03-01T23:59:07,803 filename = "" 2023-03-01T23:59:07,803 setup_py_code = "from setuptools import setup; setup()" 2023-03-01T23:59:07,803 2023-03-01T23:59:07,803 exec(compile(setup_py_code, filename, "exec")) 2023-03-01T23:59:07,803 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-lk0okjpm/superpang_ad3bf4626d124333aa94cfe0b6565eda/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-tradx8ul[/] 2023-03-01T23:59:07,803 [bold magenta]cwd[/]: /tmp/pip-wheel-lk0okjpm/superpang_ad3bf4626d124333aa94cfe0b6565eda/ 2023-03-01T23:59:07,803 Building wheel for superpang (setup.py): finished with status 'error' 2023-03-01T23:59:07,804 ERROR: Failed building wheel for superpang 2023-03-01T23:59:07,805 Running setup.py clean for superpang 2023-03-01T23:59:07,806 Running command python setup.py clean 2023-03-01T23:59:08,437 running clean 2023-03-01T23:59:08,481 removing 'build/temp.linux-armv7l-cpython-39' (and everything under it) 2023-03-01T23:59:08,484 removing 'build/lib.linux-armv7l-cpython-39' (and everything under it) 2023-03-01T23:59:08,860 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-03-01T23:59:08,860 'build/scripts-3.9' does not exist -- can't clean it 2023-03-01T23:59:08,861 removing 'build' 2023-03-01T23:59:08,934 Failed to build superpang 2023-03-01T23:59:08,937 ERROR: Failed to build one or more wheels 2023-03-01T23:59:08,939 Exception information: 2023-03-01T23:59:08,939 Traceback (most recent call last): 2023-03-01T23:59:08,939 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2023-03-01T23:59:08,939 status = run_func(*args) 2023-03-01T23:59:08,939 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2023-03-01T23:59:08,939 return func(self, options, args) 2023-03-01T23:59:08,939 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2023-03-01T23:59:08,939 raise CommandError("Failed to build one or more wheels") 2023-03-01T23:59:08,939 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-03-01T23:59:08,943 Removed build tracker: '/tmp/pip-build-tracker-lmgcbgky'