2023-03-02T00:10:54,514 Created temporary directory: /tmp/pip-ephem-wheel-cache-b8sxu2mf
2023-03-02T00:10:54,520 Created temporary directory: /tmp/pip-build-tracker-1k0fheeu
2023-03-02T00:10:54,520 Initialized build tracking at /tmp/pip-build-tracker-1k0fheeu
2023-03-02T00:10:54,521 Created build tracker: /tmp/pip-build-tracker-1k0fheeu
2023-03-02T00:10:54,521 Entered build tracker: /tmp/pip-build-tracker-1k0fheeu
2023-03-02T00:10:54,522 Created temporary directory: /tmp/pip-wheel-hs2m7uk_
2023-03-02T00:10:54,532 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-02T00:10:54,538 Created temporary directory: /tmp/pip-ephem-wheel-cache-xux6el2o
2023-03-02T00:10:54,591 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-02T00:10:54,598 2 location(s) to search for versions of cryodrgn:
2023-03-02T00:10:54,598 * https://pypi.org/simple/cryodrgn/
2023-03-02T00:10:54,598 * https://www.piwheels.org/simple/cryodrgn/
2023-03-02T00:10:54,599 Fetching project page and analyzing links: https://pypi.org/simple/cryodrgn/
2023-03-02T00:10:54,600 Getting page https://pypi.org/simple/cryodrgn/
2023-03-02T00:10:54,604 Found index url https://pypi.org/simple
2023-03-02T00:10:54,711 Fetched page https://pypi.org/simple/cryodrgn/ as application/vnd.pypi.simple.v1+json
2023-03-02T00:10:54,715   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/50/91/1306b78002812cfa9932e2691070f765b75d4385e4bbf559d211a4e71025/cryodrgn-1.1.1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-03-02T00:10:54,717   Found link https://files.pythonhosted.org/packages/24/08/8de601e5f4fe8a5177c4191c0be1848d2952dad0ef149820aadadbee2e08/cryodrgn-1.1.1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 1.1.1
2023-03-02T00:10:54,717   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/e9/78/bdf1fd8d9394a0025206a4d1478b21170d7392e35132522c5ef87855fe73/cryodrgn-2.1.0b5-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-03-02T00:10:54,719   Found link https://files.pythonhosted.org/packages/68/26/6669e39abe77e36bd49d1f21f68ed04961bdd0a76f909b497c96ce78b60b/cryodrgn-2.1.0b5.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.1.0b5
2023-03-02T00:10:54,719 Fetching project page and analyzing links: https://www.piwheels.org/simple/cryodrgn/
2023-03-02T00:10:54,720 Getting page https://www.piwheels.org/simple/cryodrgn/
2023-03-02T00:10:54,722 Found index url https://www.piwheels.org/simple
2023-03-02T00:10:54,960 Fetched page https://www.piwheels.org/simple/cryodrgn/ as text/html
2023-03-02T00:10:54,962 Skipping link: not a file: https://www.piwheels.org/simple/cryodrgn/
2023-03-02T00:10:54,962 Skipping link: not a file: https://pypi.org/simple/cryodrgn/
2023-03-02T00:10:54,999 Given no hashes to check 1 links for project 'cryodrgn': discarding no candidates
2023-03-02T00:10:55,029 Collecting cryodrgn==1.1.1
2023-03-02T00:10:55,034   Created temporary directory: /tmp/pip-unpack-q0981prp
2023-03-02T00:10:55,438   Downloading cryodrgn-1.1.1.tar.gz (27.4 MB)
2023-03-02T00:11:10,509   Added cryodrgn==1.1.1 from https://files.pythonhosted.org/packages/24/08/8de601e5f4fe8a5177c4191c0be1848d2952dad0ef149820aadadbee2e08/cryodrgn-1.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-1k0fheeu'
2023-03-02T00:11:10,523   Created temporary directory: /tmp/pip-build-env-lo9z9coj
2023-03-02T00:11:10,543   Installing build dependencies: started
2023-03-02T00:11:10,545   Running command pip subprocess to install build dependencies
2023-03-02T00:11:13,222   Using pip 23.0.1 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7)
2023-03-02T00:11:14,421   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-02T00:11:14,482   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-02T00:11:18,284   Collecting setuptools>=61.0
2023-03-02T00:11:18,524     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.4.0-py3-none-any.whl (1.1 MB)
2023-03-02T00:11:19,416   Collecting setuptools_scm>=6.2
2023-03-02T00:11:19,455     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.1.0-py3-none-any.whl (43 kB)
2023-03-02T00:11:20,463   Collecting importlib-metadata
2023-03-02T00:11:20,496     Using cached https://www.piwheels.org/simple/importlib-metadata/importlib_metadata-6.0.0-py3-none-any.whl (21 kB)
2023-03-02T00:11:20,907   Collecting packaging>=20.0
2023-03-02T00:11:20,943     Using cached https://www.piwheels.org/simple/packaging/packaging-23.0-py3-none-any.whl (42 kB)
2023-03-02T00:11:21,172   Collecting typing-extensions
2023-03-02T00:11:21,207     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.5.0-py3-none-any.whl (27 kB)
2023-03-02T00:11:21,467   Collecting tomli>=1.0.0
2023-03-02T00:11:21,499     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-03-02T00:11:22,179   Collecting zipp>=0.5
2023-03-02T00:11:22,212     Using cached https://www.piwheels.org/simple/zipp/zipp-3.15.0-py3-none-any.whl (6.8 kB)
2023-03-02T00:11:27,685   Installing collected packages: zipp, typing-extensions, tomli, setuptools, packaging, importlib-metadata, setuptools_scm
2023-03-02T00:11:33,381   Successfully installed importlib-metadata-6.0.0 packaging-23.0 setuptools-67.4.0 setuptools_scm-7.1.0 tomli-2.0.1 typing-extensions-4.5.0 zipp-3.15.0
2023-03-02T00:11:34,380   Installing build dependencies: finished with status 'done'
2023-03-02T00:11:34,395   Getting requirements to build wheel: started
2023-03-02T00:11:34,397   Running command Getting requirements to build wheel
2023-03-02T00:11:36,523   running egg_info
2023-03-02T00:11:36,539   writing cryodrgn.egg-info/PKG-INFO
2023-03-02T00:11:36,545   writing dependency_links to cryodrgn.egg-info/dependency_links.txt
2023-03-02T00:11:36,550   writing entry points to cryodrgn.egg-info/entry_points.txt
2023-03-02T00:11:36,553   writing requirements to cryodrgn.egg-info/requires.txt
2023-03-02T00:11:36,555   writing top-level names to cryodrgn.egg-info/top_level.txt
2023-03-02T00:11:36,665   /tmp/pip-build-env-lo9z9coj/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-03-02T00:11:36,665     warnings.warn(msg, _BetaConfiguration)
2023-03-02T00:11:36,666   listing git files failed - pretending there aren't any
2023-03-02T00:11:36,684   reading manifest file 'cryodrgn.egg-info/SOURCES.txt'
2023-03-02T00:11:36,702   reading manifest template 'MANIFEST.in'
2023-03-02T00:11:36,707   adding license file 'LICENSE.txt'
2023-03-02T00:11:36,734   writing manifest file 'cryodrgn.egg-info/SOURCES.txt'
2023-03-02T00:11:36,938   Getting requirements to build wheel: finished with status 'done'
2023-03-02T00:11:36,979   Installing backend dependencies: started
2023-03-02T00:11:36,981   Running command pip subprocess to install backend dependencies
2023-03-02T00:11:39,875   Using pip 23.0.1 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7)
2023-03-02T00:11:41,114   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-02T00:11:41,180   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-02T00:11:42,053   Collecting wheel
2023-03-02T00:11:42,090     Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB)
2023-03-02T00:11:46,188   Installing collected packages: wheel
2023-03-02T00:11:46,468     Creating /tmp/pip-build-env-lo9z9coj/normal/bin
2023-03-02T00:11:46,473     changing mode of /tmp/pip-build-env-lo9z9coj/normal/bin/wheel to 755
2023-03-02T00:11:46,498   Successfully installed wheel-0.38.4
2023-03-02T00:11:47,344   Installing backend dependencies: finished with status 'done'
2023-03-02T00:11:47,350   Created temporary directory: /tmp/pip-modern-metadata-6jj3jew1
2023-03-02T00:11:47,356   Preparing metadata (pyproject.toml): started
2023-03-02T00:11:47,359   Running command Preparing metadata (pyproject.toml)
2023-03-02T00:11:49,488   running dist_info
2023-03-02T00:11:49,504   creating /tmp/pip-modern-metadata-6jj3jew1/cryodrgn.egg-info
2023-03-02T00:11:49,518   writing /tmp/pip-modern-metadata-6jj3jew1/cryodrgn.egg-info/PKG-INFO
2023-03-02T00:11:49,525   writing dependency_links to /tmp/pip-modern-metadata-6jj3jew1/cryodrgn.egg-info/dependency_links.txt
2023-03-02T00:11:49,529   writing entry points to /tmp/pip-modern-metadata-6jj3jew1/cryodrgn.egg-info/entry_points.txt
2023-03-02T00:11:49,533   writing requirements to /tmp/pip-modern-metadata-6jj3jew1/cryodrgn.egg-info/requires.txt
2023-03-02T00:11:49,535   writing top-level names to /tmp/pip-modern-metadata-6jj3jew1/cryodrgn.egg-info/top_level.txt
2023-03-02T00:11:49,538   writing manifest file '/tmp/pip-modern-metadata-6jj3jew1/cryodrgn.egg-info/SOURCES.txt'
2023-03-02T00:11:49,665   /tmp/pip-build-env-lo9z9coj/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-03-02T00:11:49,665     warnings.warn(msg, _BetaConfiguration)
2023-03-02T00:11:49,665   listing git files failed - pretending there aren't any
2023-03-02T00:11:49,685   reading manifest file '/tmp/pip-modern-metadata-6jj3jew1/cryodrgn.egg-info/SOURCES.txt'
2023-03-02T00:11:49,691   reading manifest template 'MANIFEST.in'
2023-03-02T00:11:49,697   adding license file 'LICENSE.txt'
2023-03-02T00:11:49,708   writing manifest file '/tmp/pip-modern-metadata-6jj3jew1/cryodrgn.egg-info/SOURCES.txt'
2023-03-02T00:11:49,710   creating '/tmp/pip-modern-metadata-6jj3jew1/cryodrgn-1.1.1.dist-info'
2023-03-02T00:11:50,022   Preparing metadata (pyproject.toml): finished with status 'done'
2023-03-02T00:11:50,041   Source in /tmp/pip-wheel-hs2m7uk_/cryodrgn_e26bc1fc7915430ba83856c63ff18f7f has version 1.1.1, which satisfies requirement cryodrgn==1.1.1 from https://files.pythonhosted.org/packages/24/08/8de601e5f4fe8a5177c4191c0be1848d2952dad0ef149820aadadbee2e08/cryodrgn-1.1.1.tar.gz
2023-03-02T00:11:50,043   Removed cryodrgn==1.1.1 from https://files.pythonhosted.org/packages/24/08/8de601e5f4fe8a5177c4191c0be1848d2952dad0ef149820aadadbee2e08/cryodrgn-1.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-1k0fheeu'
2023-03-02T00:11:50,061 Created temporary directory: /tmp/pip-unpack-kkrejs0r
2023-03-02T00:11:50,062 Building wheels for collected packages: cryodrgn
2023-03-02T00:11:50,071   Created temporary directory: /tmp/pip-wheel-rh1dnjg2
2023-03-02T00:11:50,072   Destination directory: /tmp/pip-wheel-rh1dnjg2
2023-03-02T00:11:50,077   Building wheel for cryodrgn (pyproject.toml): started
2023-03-02T00:11:50,079   Running command Building wheel for cryodrgn (pyproject.toml)
2023-03-02T00:11:52,059   running bdist_wheel
2023-03-02T00:11:52,110   running build
2023-03-02T00:11:52,111   running build_py
2023-03-02T00:11:52,129   creating build
2023-03-02T00:11:52,130   creating build/lib
2023-03-02T00:11:52,132   creating build/lib/cryodrgn
2023-03-02T00:11:52,134   copying cryodrgn/dataset.py -> build/lib/cryodrgn
2023-03-02T00:11:52,138   copying cryodrgn/pose.py -> build/lib/cryodrgn
2023-03-02T00:11:52,142   copying cryodrgn/models.py -> build/lib/cryodrgn
2023-03-02T00:11:52,148   copying cryodrgn/__init__.py -> build/lib/cryodrgn
2023-03-02T00:11:52,151   copying cryodrgn/shift_grid.py -> build/lib/cryodrgn
2023-03-02T00:11:52,154   copying cryodrgn/ctf.py -> build/lib/cryodrgn
2023-03-02T00:11:52,157   copying cryodrgn/beta_schedule.py -> build/lib/cryodrgn
2023-03-02T00:11:52,161   copying cryodrgn/utils.py -> build/lib/cryodrgn
2023-03-02T00:11:52,165   copying cryodrgn/lattice.py -> build/lib/cryodrgn
2023-03-02T00:11:52,169   copying cryodrgn/_version.py -> build/lib/cryodrgn
2023-03-02T00:11:52,172   copying cryodrgn/fft.py -> build/lib/cryodrgn
2023-03-02T00:11:52,175   copying cryodrgn/mrc.py -> build/lib/cryodrgn
2023-03-02T00:11:52,179   copying cryodrgn/utils_exec.py -> build/lib/cryodrgn
2023-03-02T00:11:52,182   copying cryodrgn/analysis.py -> build/lib/cryodrgn
2023-03-02T00:11:52,187   copying cryodrgn/so3_grid.py -> build/lib/cryodrgn
2023-03-02T00:11:52,190   copying cryodrgn/lie_tools.py -> build/lib/cryodrgn
2023-03-02T00:11:52,194   copying cryodrgn/config.py -> build/lib/cryodrgn
2023-03-02T00:11:52,197   copying cryodrgn/shift_grid3.py -> build/lib/cryodrgn
2023-03-02T00:11:52,201   copying cryodrgn/losses.py -> build/lib/cryodrgn
2023-03-02T00:11:52,204   copying cryodrgn/__main__.py -> build/lib/cryodrgn
2023-03-02T00:11:52,208   copying cryodrgn/starfile.py -> build/lib/cryodrgn
2023-03-02T00:11:52,214   creating build/lib/cryodrgn/commands
2023-03-02T00:11:52,216   copying cryodrgn/commands/analyze_landscape.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,221   copying cryodrgn/commands/train_vae.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,226   copying cryodrgn/commands/view_config.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,229   copying cryodrgn/commands/parse_pose_star.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,233   copying cryodrgn/commands/parse_pose_csparc.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,237   copying cryodrgn/commands/analyze.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,241   copying cryodrgn/commands/train_nn.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,246   copying cryodrgn/commands/__init__.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,249   copying cryodrgn/commands/preprocess.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,253   copying cryodrgn/commands/analyze_landscape_full.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,257   copying cryodrgn/commands/parse_ctf_csparc.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,260   copying cryodrgn/commands/downsample.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,264   copying cryodrgn/commands/graph_traversal.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,268   copying cryodrgn/commands/eval_images.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,273   copying cryodrgn/commands/pc_traversal.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,276   copying cryodrgn/commands/eval_vol.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,280   copying cryodrgn/commands/backproject_voxel.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,284   copying cryodrgn/commands/parse_ctf_star.py -> build/lib/cryodrgn/commands
2023-03-02T00:11:52,291   creating build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,292   copying cryodrgn/commands_utils/select_clusters.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,296   copying cryodrgn/commands_utils/filter_mrcs.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,299   copying cryodrgn/commands_utils/write_star.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,304   copying cryodrgn/commands_utils/phase_flip.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,307   copying cryodrgn/commands_utils/__init__.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,310   copying cryodrgn/commands_utils/filter_pkl.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,314   copying cryodrgn/commands_utils/filter_star.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,317   copying cryodrgn/commands_utils/translate_mrcs.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,321   copying cryodrgn/commands_utils/add_psize.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,324   copying cryodrgn/commands_utils/view_header.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,328   copying cryodrgn/commands_utils/flip_hand.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,331   copying cryodrgn/commands_utils/invert_contrast.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,334   copying cryodrgn/commands_utils/select_random.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,338   copying cryodrgn/commands_utils/view_cs_header.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,342   copying cryodrgn/commands_utils/concat_pkls.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,345   copying cryodrgn/commands_utils/view_mrcs.py -> build/lib/cryodrgn/commands_utils
2023-03-02T00:11:52,349   running egg_info
2023-03-02T00:11:52,377   writing cryodrgn.egg-info/PKG-INFO
2023-03-02T00:11:52,382   writing dependency_links to cryodrgn.egg-info/dependency_links.txt
2023-03-02T00:11:52,386   writing entry points to cryodrgn.egg-info/entry_points.txt
2023-03-02T00:11:52,389   writing requirements to cryodrgn.egg-info/requires.txt
2023-03-02T00:11:52,391   writing top-level names to cryodrgn.egg-info/top_level.txt
2023-03-02T00:11:52,477   /tmp/pip-build-env-lo9z9coj/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-03-02T00:11:52,478     warnings.warn(msg, _BetaConfiguration)
2023-03-02T00:11:52,478   listing git files failed - pretending there aren't any
2023-03-02T00:11:52,496   reading manifest file 'cryodrgn.egg-info/SOURCES.txt'
2023-03-02T00:11:52,551   reading manifest template 'MANIFEST.in'
2023-03-02T00:11:52,555   adding license file 'LICENSE.txt'
2023-03-02T00:11:52,582   writing manifest file 'cryodrgn.egg-info/SOURCES.txt'
2023-03-02T00:11:52,605   creating build/lib/cryodrgn/templates
2023-03-02T00:11:52,607   copying cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/lib/cryodrgn/templates
2023-03-02T00:11:52,613   copying cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/lib/cryodrgn/templates
2023-03-02T00:11:52,619   copying cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/lib/cryodrgn/templates
2023-03-02T00:11:52,662   installing to build/bdist.linux-armv7l/wheel
2023-03-02T00:11:52,663   running install
2023-03-02T00:11:52,726   running install_lib
2023-03-02T00:11:52,741   creating build/bdist.linux-armv7l
2023-03-02T00:11:52,742   creating build/bdist.linux-armv7l/wheel
2023-03-02T00:11:52,747   creating build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,749   copying build/lib/cryodrgn/dataset.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,754   copying build/lib/cryodrgn/pose.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,758   copying build/lib/cryodrgn/models.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,764   copying build/lib/cryodrgn/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,768   copying build/lib/cryodrgn/shift_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,771   copying build/lib/cryodrgn/ctf.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,775   copying build/lib/cryodrgn/beta_schedule.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,779   copying build/lib/cryodrgn/utils.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,783   copying build/lib/cryodrgn/lattice.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,788   copying build/lib/cryodrgn/_version.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,791   copying build/lib/cryodrgn/fft.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,795   copying build/lib/cryodrgn/mrc.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,801   creating build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,802   copying build/lib/cryodrgn/commands/analyze_landscape.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,808   copying build/lib/cryodrgn/commands/train_vae.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,813   copying build/lib/cryodrgn/commands/view_config.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,817   copying build/lib/cryodrgn/commands/parse_pose_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,821   copying build/lib/cryodrgn/commands/parse_pose_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,825   copying build/lib/cryodrgn/commands/analyze.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,829   copying build/lib/cryodrgn/commands/train_nn.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,834   copying build/lib/cryodrgn/commands/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,837   copying build/lib/cryodrgn/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,842   copying build/lib/cryodrgn/commands/analyze_landscape_full.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,847   copying build/lib/cryodrgn/commands/parse_ctf_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,851   copying build/lib/cryodrgn/commands/downsample.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,855   copying build/lib/cryodrgn/commands/graph_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,859   copying build/lib/cryodrgn/commands/eval_images.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,864   copying build/lib/cryodrgn/commands/pc_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,868   copying build/lib/cryodrgn/commands/eval_vol.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,872   copying build/lib/cryodrgn/commands/backproject_voxel.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,877   copying build/lib/cryodrgn/commands/parse_ctf_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T00:11:52,882   creating build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,884   copying build/lib/cryodrgn/commands_utils/select_clusters.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,888   copying build/lib/cryodrgn/commands_utils/filter_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,891   copying build/lib/cryodrgn/commands_utils/write_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,896   copying build/lib/cryodrgn/commands_utils/phase_flip.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,900   copying build/lib/cryodrgn/commands_utils/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,903   copying build/lib/cryodrgn/commands_utils/filter_pkl.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,906   copying build/lib/cryodrgn/commands_utils/filter_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,910   copying build/lib/cryodrgn/commands_utils/translate_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,914   copying build/lib/cryodrgn/commands_utils/add_psize.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,917   copying build/lib/cryodrgn/commands_utils/view_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,921   copying build/lib/cryodrgn/commands_utils/flip_hand.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,925   copying build/lib/cryodrgn/commands_utils/invert_contrast.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,928   copying build/lib/cryodrgn/commands_utils/select_random.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,932   copying build/lib/cryodrgn/commands_utils/view_cs_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,936   copying build/lib/cryodrgn/commands_utils/concat_pkls.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,939   copying build/lib/cryodrgn/commands_utils/view_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T00:11:52,943   copying build/lib/cryodrgn/utils_exec.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,947   copying build/lib/cryodrgn/analysis.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,952   copying build/lib/cryodrgn/so3_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,956   copying build/lib/cryodrgn/lie_tools.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,960   copying build/lib/cryodrgn/config.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,964   copying build/lib/cryodrgn/shift_grid3.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,969   creating build/bdist.linux-armv7l/wheel/cryodrgn/templates
2023-03-02T00:11:52,971   copying build/lib/cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2023-03-02T00:11:52,977   copying build/lib/cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2023-03-02T00:11:52,981   copying build/lib/cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2023-03-02T00:11:52,987   copying build/lib/cryodrgn/losses.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,991   copying build/lib/cryodrgn/__main__.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,994   copying build/lib/cryodrgn/starfile.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T00:11:52,998   running install_egg_info
2023-03-02T00:11:53,013   Copying cryodrgn.egg-info to build/bdist.linux-armv7l/wheel/cryodrgn-1.1.1-py3.7.egg-info
2023-03-02T00:11:53,043   running install_scripts
2023-03-02T00:11:53,097   creating build/bdist.linux-armv7l/wheel/cryodrgn-1.1.1.dist-info/WHEEL
2023-03-02T00:11:53,102   creating '/tmp/pip-wheel-rh1dnjg2/.tmp-483s5mkl/cryodrgn-1.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-03-02T00:11:53,108   adding 'cryodrgn/__init__.py'
2023-03-02T00:11:53,111   adding 'cryodrgn/__main__.py'
2023-03-02T00:11:53,113   adding 'cryodrgn/_version.py'
2023-03-02T00:11:53,119   adding 'cryodrgn/analysis.py'
2023-03-02T00:11:53,122   adding 'cryodrgn/beta_schedule.py'
2023-03-02T00:11:53,125   adding 'cryodrgn/config.py'
2023-03-02T00:11:53,128   adding 'cryodrgn/ctf.py'
2023-03-02T00:11:53,132   adding 'cryodrgn/dataset.py'
2023-03-02T00:11:53,134   adding 'cryodrgn/fft.py'
2023-03-02T00:11:53,138   adding 'cryodrgn/lattice.py'
2023-03-02T00:11:53,142   adding 'cryodrgn/lie_tools.py'
2023-03-02T00:11:53,145   adding 'cryodrgn/losses.py'
2023-03-02T00:11:53,153   adding 'cryodrgn/models.py'
2023-03-02T00:11:53,157   adding 'cryodrgn/mrc.py'
2023-03-02T00:11:53,160   adding 'cryodrgn/pose.py'
2023-03-02T00:11:53,163   adding 'cryodrgn/shift_grid.py'
2023-03-02T00:11:53,166   adding 'cryodrgn/shift_grid3.py'
2023-03-02T00:11:53,168   adding 'cryodrgn/so3_grid.py'
2023-03-02T00:11:53,172   adding 'cryodrgn/starfile.py'
2023-03-02T00:11:53,175   adding 'cryodrgn/utils.py'
2023-03-02T00:11:53,178   adding 'cryodrgn/utils_exec.py'
2023-03-02T00:11:53,182   adding 'cryodrgn/commands/__init__.py'
2023-03-02T00:11:53,185   adding 'cryodrgn/commands/analyze.py'
2023-03-02T00:11:53,190   adding 'cryodrgn/commands/analyze_landscape.py'
2023-03-02T00:11:53,195   adding 'cryodrgn/commands/analyze_landscape_full.py'
2023-03-02T00:11:53,198   adding 'cryodrgn/commands/backproject_voxel.py'
2023-03-02T00:11:53,202   adding 'cryodrgn/commands/downsample.py'
2023-03-02T00:11:53,206   adding 'cryodrgn/commands/eval_images.py'
2023-03-02T00:11:53,209   adding 'cryodrgn/commands/eval_vol.py'
2023-03-02T00:11:53,213   adding 'cryodrgn/commands/graph_traversal.py'
2023-03-02T00:11:53,215   adding 'cryodrgn/commands/parse_ctf_csparc.py'
2023-03-02T00:11:53,218   adding 'cryodrgn/commands/parse_ctf_star.py'
2023-03-02T00:11:53,221   adding 'cryodrgn/commands/parse_pose_csparc.py'
2023-03-02T00:11:53,224   adding 'cryodrgn/commands/parse_pose_star.py'
2023-03-02T00:11:53,227   adding 'cryodrgn/commands/pc_traversal.py'
2023-03-02T00:11:53,231   adding 'cryodrgn/commands/preprocess.py'
2023-03-02T00:11:53,236   adding 'cryodrgn/commands/train_nn.py'
2023-03-02T00:11:53,244   adding 'cryodrgn/commands/train_vae.py'
2023-03-02T00:11:53,247   adding 'cryodrgn/commands/view_config.py'
2023-03-02T00:11:53,250   adding 'cryodrgn/commands_utils/__init__.py'
2023-03-02T00:11:53,253   adding 'cryodrgn/commands_utils/add_psize.py'
2023-03-02T00:11:53,255   adding 'cryodrgn/commands_utils/concat_pkls.py'
2023-03-02T00:11:53,258   adding 'cryodrgn/commands_utils/filter_mrcs.py'
2023-03-02T00:11:53,261   adding 'cryodrgn/commands_utils/filter_pkl.py'
2023-03-02T00:11:53,263   adding 'cryodrgn/commands_utils/filter_star.py'
2023-03-02T00:11:53,266   adding 'cryodrgn/commands_utils/flip_hand.py'
2023-03-02T00:11:53,268   adding 'cryodrgn/commands_utils/invert_contrast.py'
2023-03-02T00:11:53,271   adding 'cryodrgn/commands_utils/phase_flip.py'
2023-03-02T00:11:53,273   adding 'cryodrgn/commands_utils/select_clusters.py'
2023-03-02T00:11:53,276   adding 'cryodrgn/commands_utils/select_random.py'
2023-03-02T00:11:53,279   adding 'cryodrgn/commands_utils/translate_mrcs.py'
2023-03-02T00:11:53,282   adding 'cryodrgn/commands_utils/view_cs_header.py'
2023-03-02T00:11:53,284   adding 'cryodrgn/commands_utils/view_header.py'
2023-03-02T00:11:53,287   adding 'cryodrgn/commands_utils/view_mrcs.py'
2023-03-02T00:11:53,290   adding 'cryodrgn/commands_utils/write_star.py'
2023-03-02T00:11:53,295   adding 'cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb'
2023-03-02T00:11:53,301   adding 'cryodrgn/templates/cryoDRGN_filtering_template.ipynb'
2023-03-02T00:11:53,307   adding 'cryodrgn/templates/cryoDRGN_viz_template.ipynb'
2023-03-02T00:11:53,324   adding 'cryodrgn-1.1.1.dist-info/LICENSE.txt'
2023-03-02T00:11:53,333   adding 'cryodrgn-1.1.1.dist-info/METADATA'
2023-03-02T00:11:53,336   adding 'cryodrgn-1.1.1.dist-info/WHEEL'
2023-03-02T00:11:53,338   adding 'cryodrgn-1.1.1.dist-info/entry_points.txt'
2023-03-02T00:11:53,340   adding 'cryodrgn-1.1.1.dist-info/top_level.txt'
2023-03-02T00:11:53,343   adding 'cryodrgn-1.1.1.dist-info/RECORD'
2023-03-02T00:11:53,351   removing build/bdist.linux-armv7l/wheel
2023-03-02T00:11:53,591   Building wheel for cryodrgn (pyproject.toml): finished with status 'done'
2023-03-02T00:11:53,609   Created wheel for cryodrgn: filename=cryodrgn-1.1.1-py3-none-any.whl size=124516 sha256=b3cc3928fe1cc0f347265449cd329a61f3b7eadb9f833c26748b681c220cb4ad
2023-03-02T00:11:53,611   Stored in directory: /tmp/pip-ephem-wheel-cache-xux6el2o/wheels/d1/64/a4/7138e16a6f8c0bf73d9cf907387c774fa816505ea5c9381543
2023-03-02T00:11:53,652 Successfully built cryodrgn
2023-03-02T00:11:53,669 Removed build tracker: '/tmp/pip-build-tracker-1k0fheeu'