2023-03-02T02:49:59,348 Created temporary directory: /tmp/pip-ephem-wheel-cache-k8sxfjia
2023-03-02T02:49:59,353 Created temporary directory: /tmp/pip-build-tracker-7iiaa9dm
2023-03-02T02:49:59,354 Initialized build tracking at /tmp/pip-build-tracker-7iiaa9dm
2023-03-02T02:49:59,354 Created build tracker: /tmp/pip-build-tracker-7iiaa9dm
2023-03-02T02:49:59,355 Entered build tracker: /tmp/pip-build-tracker-7iiaa9dm
2023-03-02T02:49:59,356 Created temporary directory: /tmp/pip-wheel-2lope1gx
2023-03-02T02:49:59,366 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-02T02:49:59,372 Created temporary directory: /tmp/pip-ephem-wheel-cache-x96yt7zo
2023-03-02T02:49:59,426 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-02T02:49:59,433 2 location(s) to search for versions of cryodrgn:
2023-03-02T02:49:59,433 * https://pypi.org/simple/cryodrgn/
2023-03-02T02:49:59,433 * https://www.piwheels.org/simple/cryodrgn/
2023-03-02T02:49:59,434 Fetching project page and analyzing links: https://pypi.org/simple/cryodrgn/
2023-03-02T02:49:59,435 Getting page https://pypi.org/simple/cryodrgn/
2023-03-02T02:49:59,439 Found index url https://pypi.org/simple
2023-03-02T02:49:59,546 Fetched page https://pypi.org/simple/cryodrgn/ as application/vnd.pypi.simple.v1+json
2023-03-02T02:49:59,550   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/50/91/1306b78002812cfa9932e2691070f765b75d4385e4bbf559d211a4e71025/cryodrgn-1.1.1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-03-02T02:49:59,552   Found link https://files.pythonhosted.org/packages/24/08/8de601e5f4fe8a5177c4191c0be1848d2952dad0ef149820aadadbee2e08/cryodrgn-1.1.1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 1.1.1
2023-03-02T02:49:59,552   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/e9/78/bdf1fd8d9394a0025206a4d1478b21170d7392e35132522c5ef87855fe73/cryodrgn-2.1.0b5-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-03-02T02:49:59,554   Found link https://files.pythonhosted.org/packages/68/26/6669e39abe77e36bd49d1f21f68ed04961bdd0a76f909b497c96ce78b60b/cryodrgn-2.1.0b5.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.1.0b5
2023-03-02T02:49:59,554 Fetching project page and analyzing links: https://www.piwheels.org/simple/cryodrgn/
2023-03-02T02:49:59,555 Getting page https://www.piwheels.org/simple/cryodrgn/
2023-03-02T02:49:59,557 Found index url https://www.piwheels.org/simple
2023-03-02T02:49:59,783 Fetched page https://www.piwheels.org/simple/cryodrgn/ as text/html
2023-03-02T02:49:59,786   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-1.1.1-py3-none-any.whl#sha256=b3cc3928fe1cc0f347265449cd329a61f3b7eadb9f833c26748b681c220cb4ad (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-03-02T02:49:59,787 Skipping link: not a file: https://www.piwheels.org/simple/cryodrgn/
2023-03-02T02:49:59,787 Skipping link: not a file: https://pypi.org/simple/cryodrgn/
2023-03-02T02:49:59,821 Given no hashes to check 1 links for project 'cryodrgn': discarding no candidates
2023-03-02T02:49:59,849 Collecting cryodrgn==2.1.0b5
2023-03-02T02:49:59,853   Created temporary directory: /tmp/pip-unpack-7c4bgcer
2023-03-02T02:49:59,950   Downloading cryodrgn-2.1.0b5.tar.gz (31.4 MB)
2023-03-02T02:50:12,285   Added cryodrgn==2.1.0b5 from https://files.pythonhosted.org/packages/68/26/6669e39abe77e36bd49d1f21f68ed04961bdd0a76f909b497c96ce78b60b/cryodrgn-2.1.0b5.tar.gz to build tracker '/tmp/pip-build-tracker-7iiaa9dm'
2023-03-02T02:50:12,300   Created temporary directory: /tmp/pip-build-env-1z2ps965
2023-03-02T02:50:12,322   Installing build dependencies: started
2023-03-02T02:50:12,324   Running command pip subprocess to install build dependencies
2023-03-02T02:50:15,161   Using pip 23.0.1 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7)
2023-03-02T02:50:16,385   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-02T02:50:16,451   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-02T02:50:20,269   Collecting setuptools>=61.0
2023-03-02T02:50:20,514     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.4.0-py3-none-any.whl (1.1 MB)
2023-03-02T02:50:21,397   Collecting setuptools_scm>=6.2
2023-03-02T02:50:21,430     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.1.0-py3-none-any.whl (43 kB)
2023-03-02T02:50:21,772   Collecting tomli>=1.0.0
2023-03-02T02:50:21,805     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-03-02T02:50:22,203   Collecting packaging>=20.0
2023-03-02T02:50:22,248     Using cached https://www.piwheels.org/simple/packaging/packaging-23.0-py3-none-any.whl (42 kB)
2023-03-02T02:50:22,470   Collecting typing-extensions
2023-03-02T02:50:22,502     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.5.0-py3-none-any.whl (27 kB)
2023-03-02T02:50:23,423   Collecting importlib-metadata
2023-03-02T02:50:23,454     Using cached https://www.piwheels.org/simple/importlib-metadata/importlib_metadata-6.0.0-py3-none-any.whl (21 kB)
2023-03-02T02:50:24,091   Collecting zipp>=0.5
2023-03-02T02:50:24,121     Using cached https://www.piwheels.org/simple/zipp/zipp-3.15.0-py3-none-any.whl (6.8 kB)
2023-03-02T02:50:29,396   Installing collected packages: zipp, typing-extensions, tomli, setuptools, packaging, importlib-metadata, setuptools_scm
2023-03-02T02:50:34,742   Successfully installed importlib-metadata-6.0.0 packaging-23.0 setuptools-67.4.0 setuptools_scm-7.1.0 tomli-2.0.1 typing-extensions-4.5.0 zipp-3.15.0
2023-03-02T02:50:35,729   Installing build dependencies: finished with status 'done'
2023-03-02T02:50:35,740   Getting requirements to build wheel: started
2023-03-02T02:50:35,742   Running command Getting requirements to build wheel
2023-03-02T02:50:37,832   running egg_info
2023-03-02T02:50:37,848   writing cryodrgn.egg-info/PKG-INFO
2023-03-02T02:50:37,855   writing dependency_links to cryodrgn.egg-info/dependency_links.txt
2023-03-02T02:50:37,860   writing entry points to cryodrgn.egg-info/entry_points.txt
2023-03-02T02:50:37,863   writing requirements to cryodrgn.egg-info/requires.txt
2023-03-02T02:50:37,865   writing top-level names to cryodrgn.egg-info/top_level.txt
2023-03-02T02:50:37,976   /tmp/pip-build-env-1z2ps965/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-03-02T02:50:37,977     warnings.warn(msg, _BetaConfiguration)
2023-03-02T02:50:37,977   listing git files failed - pretending there aren't any
2023-03-02T02:50:37,995   reading manifest file 'cryodrgn.egg-info/SOURCES.txt'
2023-03-02T02:50:38,015   reading manifest template 'MANIFEST.in'
2023-03-02T02:50:38,020   adding license file 'LICENSE.txt'
2023-03-02T02:50:38,048   writing manifest file 'cryodrgn.egg-info/SOURCES.txt'
2023-03-02T02:50:38,252   Getting requirements to build wheel: finished with status 'done'
2023-03-02T02:50:38,294   Installing backend dependencies: started
2023-03-02T02:50:38,296   Running command pip subprocess to install backend dependencies
2023-03-02T02:50:40,991   Using pip 23.0.1 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7)
2023-03-02T02:50:42,176   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-02T02:50:42,234   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-02T02:50:43,181   Collecting wheel
2023-03-02T02:50:43,216     Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB)
2023-03-02T02:50:47,002   Installing collected packages: wheel
2023-03-02T02:50:47,278     Creating /tmp/pip-build-env-1z2ps965/normal/bin
2023-03-02T02:50:47,282     changing mode of /tmp/pip-build-env-1z2ps965/normal/bin/wheel to 755
2023-03-02T02:50:47,307   Successfully installed wheel-0.38.4
2023-03-02T02:50:48,172   Installing backend dependencies: finished with status 'done'
2023-03-02T02:50:48,178   Created temporary directory: /tmp/pip-modern-metadata-15o50ggk
2023-03-02T02:50:48,184   Preparing metadata (pyproject.toml): started
2023-03-02T02:50:48,186   Running command Preparing metadata (pyproject.toml)
2023-03-02T02:50:50,312   running dist_info
2023-03-02T02:50:50,330   creating /tmp/pip-modern-metadata-15o50ggk/cryodrgn.egg-info
2023-03-02T02:50:50,344   writing /tmp/pip-modern-metadata-15o50ggk/cryodrgn.egg-info/PKG-INFO
2023-03-02T02:50:50,352   writing dependency_links to /tmp/pip-modern-metadata-15o50ggk/cryodrgn.egg-info/dependency_links.txt
2023-03-02T02:50:50,357   writing entry points to /tmp/pip-modern-metadata-15o50ggk/cryodrgn.egg-info/entry_points.txt
2023-03-02T02:50:50,360   writing requirements to /tmp/pip-modern-metadata-15o50ggk/cryodrgn.egg-info/requires.txt
2023-03-02T02:50:50,362   writing top-level names to /tmp/pip-modern-metadata-15o50ggk/cryodrgn.egg-info/top_level.txt
2023-03-02T02:50:50,364   writing manifest file '/tmp/pip-modern-metadata-15o50ggk/cryodrgn.egg-info/SOURCES.txt'
2023-03-02T02:50:50,494   /tmp/pip-build-env-1z2ps965/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-03-02T02:50:50,495     warnings.warn(msg, _BetaConfiguration)
2023-03-02T02:50:50,495   listing git files failed - pretending there aren't any
2023-03-02T02:50:50,514   reading manifest file '/tmp/pip-modern-metadata-15o50ggk/cryodrgn.egg-info/SOURCES.txt'
2023-03-02T02:50:50,522   reading manifest template 'MANIFEST.in'
2023-03-02T02:50:50,527   adding license file 'LICENSE.txt'
2023-03-02T02:50:50,539   writing manifest file '/tmp/pip-modern-metadata-15o50ggk/cryodrgn.egg-info/SOURCES.txt'
2023-03-02T02:50:50,541   creating '/tmp/pip-modern-metadata-15o50ggk/cryodrgn-2.1.0b5.dist-info'
2023-03-02T02:50:50,861   Preparing metadata (pyproject.toml): finished with status 'done'
2023-03-02T02:50:50,882   Source in /tmp/pip-wheel-2lope1gx/cryodrgn_65fd153d36d44b2b8c53a5dac2f21f95 has version 2.1.0b5, which satisfies requirement cryodrgn==2.1.0b5 from https://files.pythonhosted.org/packages/68/26/6669e39abe77e36bd49d1f21f68ed04961bdd0a76f909b497c96ce78b60b/cryodrgn-2.1.0b5.tar.gz
2023-03-02T02:50:50,884   Removed cryodrgn==2.1.0b5 from https://files.pythonhosted.org/packages/68/26/6669e39abe77e36bd49d1f21f68ed04961bdd0a76f909b497c96ce78b60b/cryodrgn-2.1.0b5.tar.gz from build tracker '/tmp/pip-build-tracker-7iiaa9dm'
2023-03-02T02:50:50,903 Created temporary directory: /tmp/pip-unpack-amqw5yp7
2023-03-02T02:50:50,905 Building wheels for collected packages: cryodrgn
2023-03-02T02:50:50,913   Created temporary directory: /tmp/pip-wheel-g_lzbode
2023-03-02T02:50:50,914   Destination directory: /tmp/pip-wheel-g_lzbode
2023-03-02T02:50:50,919   Building wheel for cryodrgn (pyproject.toml): started
2023-03-02T02:50:50,921   Running command Building wheel for cryodrgn (pyproject.toml)
2023-03-02T02:50:52,882   running bdist_wheel
2023-03-02T02:50:52,932   running build
2023-03-02T02:50:52,933   running build_py
2023-03-02T02:50:52,951   creating build
2023-03-02T02:50:52,952   creating build/lib
2023-03-02T02:50:52,953   creating build/lib/cryodrgn
2023-03-02T02:50:52,955   copying cryodrgn/shift_grid3.py -> build/lib/cryodrgn
2023-03-02T02:50:52,959   copying cryodrgn/config.py -> build/lib/cryodrgn
2023-03-02T02:50:52,962   copying cryodrgn/losses.py -> build/lib/cryodrgn
2023-03-02T02:50:52,965   copying cryodrgn/utils_exec.py -> build/lib/cryodrgn
2023-03-02T02:50:52,969   copying cryodrgn/_version.py -> build/lib/cryodrgn
2023-03-02T02:50:52,972   copying cryodrgn/mrc.py -> build/lib/cryodrgn
2023-03-02T02:50:52,976   copying cryodrgn/dataset.py -> build/lib/cryodrgn
2023-03-02T02:50:52,980   copying cryodrgn/make_healpy.py -> build/lib/cryodrgn
2023-03-02T02:50:52,983   copying cryodrgn/starfile.py -> build/lib/cryodrgn
2023-03-02T02:50:52,987   copying cryodrgn/__main__.py -> build/lib/cryodrgn
2023-03-02T02:50:52,991   copying cryodrgn/analysis.py -> build/lib/cryodrgn
2023-03-02T02:50:52,995   copying cryodrgn/utils.py -> build/lib/cryodrgn
2023-03-02T02:50:52,999   copying cryodrgn/ctf.py -> build/lib/cryodrgn
2023-03-02T02:50:53,003   copying cryodrgn/beta_schedule.py -> build/lib/cryodrgn
2023-03-02T02:50:53,006   copying cryodrgn/lie_tools.py -> build/lib/cryodrgn
2023-03-02T02:50:53,010   copying cryodrgn/__init__.py -> build/lib/cryodrgn
2023-03-02T02:50:53,013   copying cryodrgn/so3_grid.py -> build/lib/cryodrgn
2023-03-02T02:50:53,017   copying cryodrgn/shift_grid.py -> build/lib/cryodrgn
2023-03-02T02:50:53,020   copying cryodrgn/pose.py -> build/lib/cryodrgn
2023-03-02T02:50:53,024   copying cryodrgn/lattice.py -> build/lib/cryodrgn
2023-03-02T02:50:53,027   copying cryodrgn/models.py -> build/lib/cryodrgn
2023-03-02T02:50:53,033   copying cryodrgn/types.py -> build/lib/cryodrgn
2023-03-02T02:50:53,037   copying cryodrgn/pose_search.py -> build/lib/cryodrgn
2023-03-02T02:50:53,041   copying cryodrgn/fft.py -> build/lib/cryodrgn
2023-03-02T02:50:53,048   creating build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,049   copying cryodrgn/commands_utils/filter_mrcs.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,053   copying cryodrgn/commands_utils/filter_pkl.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,056   copying cryodrgn/commands_utils/filter_star.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,059   copying cryodrgn/commands_utils/view_header.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,062   copying cryodrgn/commands_utils/view_mrcs.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,066   copying cryodrgn/commands_utils/write_cs.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,069   copying cryodrgn/commands_utils/select_random.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,072   copying cryodrgn/commands_utils/select_clusters.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,075   copying cryodrgn/commands_utils/translate_mrcs.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,079   copying cryodrgn/commands_utils/flip_hand.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,082   copying cryodrgn/commands_utils/add_psize.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,085   copying cryodrgn/commands_utils/invert_contrast.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,088   copying cryodrgn/commands_utils/view_cs_header.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,091   copying cryodrgn/commands_utils/__init__.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,094   copying cryodrgn/commands_utils/write_star.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,098   copying cryodrgn/commands_utils/phase_flip.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,101   copying cryodrgn/commands_utils/concat_pkls.py -> build/lib/cryodrgn/commands_utils
2023-03-02T02:50:53,107   creating build/lib/cryodrgn/commands
2023-03-02T02:50:53,109   copying cryodrgn/commands/parse_ctf_star.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,113   copying cryodrgn/commands/downsample.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,116   copying cryodrgn/commands/abinit_homo.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,121   copying cryodrgn/commands/view_config.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,124   copying cryodrgn/commands/eval_vol.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,128   copying cryodrgn/commands/train_nn.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,132   copying cryodrgn/commands/parse_ctf_csparc.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,135   copying cryodrgn/commands/analyze.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,140   copying cryodrgn/commands/preprocess.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,143   copying cryodrgn/commands/eval_images.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,148   copying cryodrgn/commands/parse_pose_csparc.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,151   copying cryodrgn/commands/pc_traversal.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,154   copying cryodrgn/commands/graph_traversal.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,158   copying cryodrgn/commands/abinit_het.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,164   copying cryodrgn/commands/parse_pose_star.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,167   copying cryodrgn/commands/train_vae.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,172   copying cryodrgn/commands/analyze_landscape.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,176   copying cryodrgn/commands/backproject_voxel.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,180   copying cryodrgn/commands/__init__.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,183   copying cryodrgn/commands/analyze_landscape_full.py -> build/lib/cryodrgn/commands
2023-03-02T02:50:53,186   running egg_info
2023-03-02T02:50:53,214   writing cryodrgn.egg-info/PKG-INFO
2023-03-02T02:50:53,219   writing dependency_links to cryodrgn.egg-info/dependency_links.txt
2023-03-02T02:50:53,223   writing entry points to cryodrgn.egg-info/entry_points.txt
2023-03-02T02:50:53,226   writing requirements to cryodrgn.egg-info/requires.txt
2023-03-02T02:50:53,228   writing top-level names to cryodrgn.egg-info/top_level.txt
2023-03-02T02:50:53,313   /tmp/pip-build-env-1z2ps965/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-03-02T02:50:53,313     warnings.warn(msg, _BetaConfiguration)
2023-03-02T02:50:53,314   listing git files failed - pretending there aren't any
2023-03-02T02:50:53,332   reading manifest file 'cryodrgn.egg-info/SOURCES.txt'
2023-03-02T02:50:53,387   reading manifest template 'MANIFEST.in'
2023-03-02T02:50:53,392   adding license file 'LICENSE.txt'
2023-03-02T02:50:53,420   writing manifest file 'cryodrgn.egg-info/SOURCES.txt'
2023-03-02T02:50:53,445   copying cryodrgn/healpy_grid.json -> build/lib/cryodrgn
2023-03-02T02:50:53,948   creating build/lib/cryodrgn/templates
2023-03-02T02:50:53,950   copying cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/lib/cryodrgn/templates
2023-03-02T02:50:53,955   copying cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/lib/cryodrgn/templates
2023-03-02T02:50:53,961   copying cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/lib/cryodrgn/templates
2023-03-02T02:50:54,007   installing to build/bdist.linux-armv7l/wheel
2023-03-02T02:50:54,008   running install
2023-03-02T02:50:54,070   running install_lib
2023-03-02T02:50:54,086   creating build/bdist.linux-armv7l
2023-03-02T02:50:54,087   creating build/bdist.linux-armv7l/wheel
2023-03-02T02:50:54,092   creating build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,095   copying build/lib/cryodrgn/shift_grid3.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,099   copying build/lib/cryodrgn/config.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,103   copying build/lib/cryodrgn/losses.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,107   copying build/lib/cryodrgn/utils_exec.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,112   copying build/lib/cryodrgn/_version.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,116   creating build/bdist.linux-armv7l/wheel/cryodrgn/templates
2023-03-02T02:50:54,118   copying build/lib/cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2023-03-02T02:50:54,123   copying build/lib/cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2023-03-02T02:50:54,127   copying build/lib/cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2023-03-02T02:50:54,132   copying build/lib/cryodrgn/mrc.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,136   copying build/lib/cryodrgn/healpy_grid.json -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,545   copying build/lib/cryodrgn/dataset.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,550   copying build/lib/cryodrgn/make_healpy.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,553   copying build/lib/cryodrgn/starfile.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,557   copying build/lib/cryodrgn/__main__.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,562   creating build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,564   copying build/lib/cryodrgn/commands_utils/filter_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,567   copying build/lib/cryodrgn/commands_utils/filter_pkl.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,571   copying build/lib/cryodrgn/commands_utils/filter_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,574   copying build/lib/cryodrgn/commands_utils/view_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,577   copying build/lib/cryodrgn/commands_utils/view_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,581   copying build/lib/cryodrgn/commands_utils/write_cs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,585   copying build/lib/cryodrgn/commands_utils/select_random.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,589   copying build/lib/cryodrgn/commands_utils/select_clusters.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,593   copying build/lib/cryodrgn/commands_utils/translate_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,597   copying build/lib/cryodrgn/commands_utils/flip_hand.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,600   copying build/lib/cryodrgn/commands_utils/add_psize.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,604   copying build/lib/cryodrgn/commands_utils/invert_contrast.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,607   copying build/lib/cryodrgn/commands_utils/view_cs_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,611   copying build/lib/cryodrgn/commands_utils/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,614   copying build/lib/cryodrgn/commands_utils/write_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,618   copying build/lib/cryodrgn/commands_utils/phase_flip.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,621   copying build/lib/cryodrgn/commands_utils/concat_pkls.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-03-02T02:50:54,625   copying build/lib/cryodrgn/analysis.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,632   creating build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,634   copying build/lib/cryodrgn/commands/parse_ctf_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,639   copying build/lib/cryodrgn/commands/downsample.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,644   copying build/lib/cryodrgn/commands/abinit_homo.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,649   copying build/lib/cryodrgn/commands/view_config.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,653   copying build/lib/cryodrgn/commands/eval_vol.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,658   copying build/lib/cryodrgn/commands/train_nn.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,663   copying build/lib/cryodrgn/commands/parse_ctf_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,668   copying build/lib/cryodrgn/commands/analyze.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,673   copying build/lib/cryodrgn/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,678   copying build/lib/cryodrgn/commands/eval_images.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,682   copying build/lib/cryodrgn/commands/parse_pose_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,686   copying build/lib/cryodrgn/commands/pc_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,689   copying build/lib/cryodrgn/commands/graph_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,693   copying build/lib/cryodrgn/commands/abinit_het.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,699   copying build/lib/cryodrgn/commands/parse_pose_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,702   copying build/lib/cryodrgn/commands/train_vae.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,707   copying build/lib/cryodrgn/commands/analyze_landscape.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,713   copying build/lib/cryodrgn/commands/backproject_voxel.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,717   copying build/lib/cryodrgn/commands/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,721   copying build/lib/cryodrgn/commands/analyze_landscape_full.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-03-02T02:50:54,726   copying build/lib/cryodrgn/utils.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,730   copying build/lib/cryodrgn/ctf.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,735   copying build/lib/cryodrgn/beta_schedule.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,739   copying build/lib/cryodrgn/lie_tools.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,744   copying build/lib/cryodrgn/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,748   copying build/lib/cryodrgn/so3_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,752   copying build/lib/cryodrgn/shift_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,756   copying build/lib/cryodrgn/pose.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,760   copying build/lib/cryodrgn/lattice.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,765   copying build/lib/cryodrgn/models.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,771   copying build/lib/cryodrgn/types.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,774   copying build/lib/cryodrgn/pose_search.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,779   copying build/lib/cryodrgn/fft.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-03-02T02:50:54,782   running install_egg_info
2023-03-02T02:50:54,796   Copying cryodrgn.egg-info to build/bdist.linux-armv7l/wheel/cryodrgn-2.1.0b5-py3.7.egg-info
2023-03-02T02:50:54,823   running install_scripts
2023-03-02T02:50:54,886   creating build/bdist.linux-armv7l/wheel/cryodrgn-2.1.0b5.dist-info/WHEEL
2023-03-02T02:50:54,892   creating '/tmp/pip-wheel-g_lzbode/.tmp-ubw9d6p8/cryodrgn-2.1.0b5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-03-02T02:50:54,897   adding 'cryodrgn/__init__.py'
2023-03-02T02:50:54,900   adding 'cryodrgn/__main__.py'
2023-03-02T02:50:54,903   adding 'cryodrgn/_version.py'
2023-03-02T02:50:54,909   adding 'cryodrgn/analysis.py'
2023-03-02T02:50:54,912   adding 'cryodrgn/beta_schedule.py'
2023-03-02T02:50:54,914   adding 'cryodrgn/config.py'
2023-03-02T02:50:54,917   adding 'cryodrgn/ctf.py'
2023-03-02T02:50:54,922   adding 'cryodrgn/dataset.py'
2023-03-02T02:50:54,924   adding 'cryodrgn/fft.py'
2023-03-02T02:50:56,857   adding 'cryodrgn/healpy_grid.json'
2023-03-02T02:50:57,066   adding 'cryodrgn/lattice.py'
2023-03-02T02:50:57,070   adding 'cryodrgn/lie_tools.py'
2023-03-02T02:50:57,072   adding 'cryodrgn/losses.py'
2023-03-02T02:50:57,075   adding 'cryodrgn/make_healpy.py'
2023-03-02T02:50:57,084   adding 'cryodrgn/models.py'
2023-03-02T02:50:57,089   adding 'cryodrgn/mrc.py'
2023-03-02T02:50:57,092   adding 'cryodrgn/pose.py'
2023-03-02T02:50:57,098   adding 'cryodrgn/pose_search.py'
2023-03-02T02:50:57,101   adding 'cryodrgn/shift_grid.py'
2023-03-02T02:50:57,103   adding 'cryodrgn/shift_grid3.py'
2023-03-02T02:50:57,106   adding 'cryodrgn/so3_grid.py'
2023-03-02T02:50:57,110   adding 'cryodrgn/starfile.py'
2023-03-02T02:50:57,113   adding 'cryodrgn/types.py'
2023-03-02T02:50:57,116   adding 'cryodrgn/utils.py'
2023-03-02T02:50:57,119   adding 'cryodrgn/utils_exec.py'
2023-03-02T02:50:57,122   adding 'cryodrgn/commands/__init__.py'
2023-03-02T02:50:57,132   adding 'cryodrgn/commands/abinit_het.py'
2023-03-02T02:50:57,139   adding 'cryodrgn/commands/abinit_homo.py'
2023-03-02T02:50:57,144   adding 'cryodrgn/commands/analyze.py'
2023-03-02T02:50:57,149   adding 'cryodrgn/commands/analyze_landscape.py'
2023-03-02T02:50:57,154   adding 'cryodrgn/commands/analyze_landscape_full.py'
2023-03-02T02:50:57,158   adding 'cryodrgn/commands/backproject_voxel.py'
2023-03-02T02:50:57,161   adding 'cryodrgn/commands/downsample.py'
2023-03-02T02:50:57,165   adding 'cryodrgn/commands/eval_images.py'
2023-03-02T02:50:57,169   adding 'cryodrgn/commands/eval_vol.py'
2023-03-02T02:50:57,173   adding 'cryodrgn/commands/graph_traversal.py'
2023-03-02T02:50:57,176   adding 'cryodrgn/commands/parse_ctf_csparc.py'
2023-03-02T02:50:57,179   adding 'cryodrgn/commands/parse_ctf_star.py'
2023-03-02T02:50:57,181   adding 'cryodrgn/commands/parse_pose_csparc.py'
2023-03-02T02:50:57,184   adding 'cryodrgn/commands/parse_pose_star.py'
2023-03-02T02:50:57,187   adding 'cryodrgn/commands/pc_traversal.py'
2023-03-02T02:50:57,191   adding 'cryodrgn/commands/preprocess.py'
2023-03-02T02:50:57,196   adding 'cryodrgn/commands/train_nn.py'
2023-03-02T02:50:57,205   adding 'cryodrgn/commands/train_vae.py'
2023-03-02T02:50:57,208   adding 'cryodrgn/commands/view_config.py'
2023-03-02T02:50:57,212   adding 'cryodrgn/commands_utils/__init__.py'
2023-03-02T02:50:57,214   adding 'cryodrgn/commands_utils/add_psize.py'
2023-03-02T02:50:57,217   adding 'cryodrgn/commands_utils/concat_pkls.py'
2023-03-02T02:50:57,219   adding 'cryodrgn/commands_utils/filter_mrcs.py'
2023-03-02T02:50:57,222   adding 'cryodrgn/commands_utils/filter_pkl.py'
2023-03-02T02:50:57,225   adding 'cryodrgn/commands_utils/filter_star.py'
2023-03-02T02:50:57,227   adding 'cryodrgn/commands_utils/flip_hand.py'
2023-03-02T02:50:57,230   adding 'cryodrgn/commands_utils/invert_contrast.py'
2023-03-02T02:50:57,232   adding 'cryodrgn/commands_utils/phase_flip.py'
2023-03-02T02:50:57,235   adding 'cryodrgn/commands_utils/select_clusters.py'
2023-03-02T02:50:57,237   adding 'cryodrgn/commands_utils/select_random.py'
2023-03-02T02:50:57,240   adding 'cryodrgn/commands_utils/translate_mrcs.py'
2023-03-02T02:50:57,243   adding 'cryodrgn/commands_utils/view_cs_header.py'
2023-03-02T02:50:57,245   adding 'cryodrgn/commands_utils/view_header.py'
2023-03-02T02:50:57,248   adding 'cryodrgn/commands_utils/view_mrcs.py'
2023-03-02T02:50:57,251   adding 'cryodrgn/commands_utils/write_cs.py'
2023-03-02T02:50:57,254   adding 'cryodrgn/commands_utils/write_star.py'
2023-03-02T02:50:57,259   adding 'cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb'
2023-03-02T02:50:57,265   adding 'cryodrgn/templates/cryoDRGN_filtering_template.ipynb'
2023-03-02T02:50:57,270   adding 'cryodrgn/templates/cryoDRGN_viz_template.ipynb'
2023-03-02T02:50:57,287   adding 'cryodrgn-2.1.0b5.dist-info/LICENSE.txt'
2023-03-02T02:50:57,299   adding 'cryodrgn-2.1.0b5.dist-info/METADATA'
2023-03-02T02:50:57,301   adding 'cryodrgn-2.1.0b5.dist-info/WHEEL'
2023-03-02T02:50:57,303   adding 'cryodrgn-2.1.0b5.dist-info/entry_points.txt'
2023-03-02T02:50:57,305   adding 'cryodrgn-2.1.0b5.dist-info/top_level.txt'
2023-03-02T02:50:57,309   adding 'cryodrgn-2.1.0b5.dist-info/RECORD'
2023-03-02T02:50:57,354   removing build/bdist.linux-armv7l/wheel
2023-03-02T02:50:57,600   Building wheel for cryodrgn (pyproject.toml): finished with status 'done'
2023-03-02T02:50:57,682   Created wheel for cryodrgn: filename=cryodrgn-2.1.0b5-py3-none-any.whl size=1126552 sha256=f43221397e48ac64c02c3009e927ea1212a8ad59ed1e20421a65287c9e853652
2023-03-02T02:50:57,684   Stored in directory: /tmp/pip-ephem-wheel-cache-x96yt7zo/wheels/d7/a4/ce/b0b12a094955013dcd19c8e180e3abade85d3f02ca898f1eb1
2023-03-02T02:50:57,729 Successfully built cryodrgn
2023-03-02T02:50:57,815 Removed build tracker: '/tmp/pip-build-tracker-7iiaa9dm'