2023-03-02T13:51:40,294 Created temporary directory: /tmp/pip-ephem-wheel-cache-dfe12092
2023-03-02T13:51:40,297 Created temporary directory: /tmp/pip-build-tracker-cgsegp9u
2023-03-02T13:51:40,297 Initialized build tracking at /tmp/pip-build-tracker-cgsegp9u
2023-03-02T13:51:40,298 Created build tracker: /tmp/pip-build-tracker-cgsegp9u
2023-03-02T13:51:40,298 Entered build tracker: /tmp/pip-build-tracker-cgsegp9u
2023-03-02T13:51:40,298 Created temporary directory: /tmp/pip-wheel-wn8dfbo2
2023-03-02T13:51:40,303 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-02T13:51:40,306 Created temporary directory: /tmp/pip-ephem-wheel-cache-mrvpsp56
2023-03-02T13:51:40,334 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-02T13:51:40,337 2 location(s) to search for versions of cool-seq-tool:
2023-03-02T13:51:40,337 * https://pypi.org/simple/cool-seq-tool/
2023-03-02T13:51:40,337 * https://www.piwheels.org/simple/cool-seq-tool/
2023-03-02T13:51:40,338 Fetching project page and analyzing links: https://pypi.org/simple/cool-seq-tool/
2023-03-02T13:51:40,338 Getting page https://pypi.org/simple/cool-seq-tool/
2023-03-02T13:51:40,340 Found index url https://pypi.org/simple
2023-03-02T13:51:40,391 Fetched page https://pypi.org/simple/cool-seq-tool/ as application/vnd.pypi.simple.v1+json
2023-03-02T13:51:40,393   Skipping link: No binaries permitted for cool-seq-tool: https://files.pythonhosted.org/packages/fa/06/a3365ef2f3aa1e7370d16a48e8f058ba6f924d314e1f1e84d8fda49c0085/cool_seq_tool-0.1.4-py3-none-any.whl (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.8)
2023-03-02T13:51:40,394   Found link https://files.pythonhosted.org/packages/c0/ca/6a1e8e05147b03a4ddfcecfeee10e744bb25afe636633e5d1749189760bd/cool_seq_tool-0.1.4.tar.gz (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.8), version: 0.1.4
2023-03-02T13:51:40,394   Skipping link: No binaries permitted for cool-seq-tool: https://files.pythonhosted.org/packages/02/21/8d61ea0ffb7c583c3348e7ef0bc98ac57fc386410c2488bfbb3b770133d2/cool_seq_tool-0.1.5-py3-none-any.whl (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.8)
2023-03-02T13:51:40,395   Found link https://files.pythonhosted.org/packages/0a/bf/88f64dd3906c3ac1a79b3d72f11ca950ce3028bea0e114f526432cfdfb86/cool_seq_tool-0.1.5.tar.gz (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.8), version: 0.1.5
2023-03-02T13:51:40,395   Skipping link: No binaries permitted for cool-seq-tool: https://files.pythonhosted.org/packages/57/f5/818aab2637c0bdd1644118048728daa442748279b4d2637576976980cb85/cool_seq_tool-0.1.6-py3-none-any.whl (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.8)
2023-03-02T13:51:40,395   Found link https://files.pythonhosted.org/packages/0a/ac/aa2bc9770fa12cbc0bd4e704d49101dceb80ef70ec5222b140f056aff37a/cool_seq_tool-0.1.6.tar.gz (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.8), version: 0.1.6
2023-03-02T13:51:40,396   Skipping link: No binaries permitted for cool-seq-tool: https://files.pythonhosted.org/packages/67/b9/d4fbb005cfdbde80a5a6262754d6f0dff38ec200b33f4887c0390ea9d28d/cool_seq_tool-0.1.7-py3-none-any.whl (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.8)
2023-03-02T13:51:40,396   Found link https://files.pythonhosted.org/packages/4b/df/488b4dfef14e53f0968a58917733cc8793f4b52217d13c3a5a07ec771c55/cool_seq_tool-0.1.7.tar.gz (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.8), version: 0.1.7
2023-03-02T13:51:40,397 Fetching project page and analyzing links: https://www.piwheels.org/simple/cool-seq-tool/
2023-03-02T13:51:40,397 Getting page https://www.piwheels.org/simple/cool-seq-tool/
2023-03-02T13:51:40,398 Found index url https://www.piwheels.org/simple
2023-03-02T13:51:40,598 Fetched page https://www.piwheels.org/simple/cool-seq-tool/ as text/html
2023-03-02T13:51:40,601   Skipping link: No binaries permitted for cool-seq-tool: https://www.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.6-py3-none-any.whl#sha256=e6c7710a805b4fbe77f84fa23d8c451e374bef97e036352d2391888c3e6e22d6 (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8)
2023-03-02T13:51:40,601   Skipping link: No binaries permitted for cool-seq-tool: https://www.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.5-py3-none-any.whl#sha256=8c06d9425c581bc6b94bea9cf23a9ba058c0fa5d1999971d6c6b29797366163e (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8)
2023-03-02T13:51:40,602   Skipping link: No binaries permitted for cool-seq-tool: https://www.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.4-py3-none-any.whl#sha256=99837ef6073c54c2795f87af602a31fb916f37a7c1b365962a9e13f9049b0c3d (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8)
2023-03-02T13:51:40,602 Skipping link: not a file: https://www.piwheels.org/simple/cool-seq-tool/
2023-03-02T13:51:40,602 Skipping link: not a file: https://pypi.org/simple/cool-seq-tool/
2023-03-02T13:51:40,630 Given no hashes to check 1 links for project 'cool-seq-tool': discarding no candidates
2023-03-02T13:51:40,654 Collecting cool-seq-tool==0.1.7
2023-03-02T13:51:40,657   Created temporary directory: /tmp/pip-unpack-9s436_03
2023-03-02T13:51:41,167   Downloading cool_seq_tool-0.1.7.tar.gz (4.0 MB)
2023-03-02T13:51:42,856   Added cool-seq-tool==0.1.7 from https://files.pythonhosted.org/packages/4b/df/488b4dfef14e53f0968a58917733cc8793f4b52217d13c3a5a07ec771c55/cool_seq_tool-0.1.7.tar.gz to build tracker '/tmp/pip-build-tracker-cgsegp9u'
2023-03-02T13:51:42,857   Running setup.py (path:/tmp/pip-wheel-wn8dfbo2/cool-seq-tool_6dcd9ffe79824be59169677bc61e3b09/setup.py) egg_info for package cool-seq-tool
2023-03-02T13:51:42,858   Created temporary directory: /tmp/pip-pip-egg-info-qz3f5oj6
2023-03-02T13:51:42,858   Preparing metadata (setup.py): started
2023-03-02T13:51:42,859   Running command python setup.py egg_info
2023-03-02T13:51:43,619   running egg_info
2023-03-02T13:51:43,621   creating /tmp/pip-pip-egg-info-qz3f5oj6/cool_seq_tool.egg-info
2023-03-02T13:51:43,642   writing /tmp/pip-pip-egg-info-qz3f5oj6/cool_seq_tool.egg-info/PKG-INFO
2023-03-02T13:51:43,645   writing dependency_links to /tmp/pip-pip-egg-info-qz3f5oj6/cool_seq_tool.egg-info/dependency_links.txt
2023-03-02T13:51:43,648   writing requirements to /tmp/pip-pip-egg-info-qz3f5oj6/cool_seq_tool.egg-info/requires.txt
2023-03-02T13:51:43,649   writing top-level names to /tmp/pip-pip-egg-info-qz3f5oj6/cool_seq_tool.egg-info/top_level.txt
2023-03-02T13:51:43,651   writing manifest file '/tmp/pip-pip-egg-info-qz3f5oj6/cool_seq_tool.egg-info/SOURCES.txt'
2023-03-02T13:51:43,725   reading manifest file '/tmp/pip-pip-egg-info-qz3f5oj6/cool_seq_tool.egg-info/SOURCES.txt'
2023-03-02T13:51:43,727   adding license file 'LICENSE'
2023-03-02T13:51:43,730   writing manifest file '/tmp/pip-pip-egg-info-qz3f5oj6/cool_seq_tool.egg-info/SOURCES.txt'
2023-03-02T13:51:43,792   Preparing metadata (setup.py): finished with status 'done'
2023-03-02T13:51:43,799   Source in /tmp/pip-wheel-wn8dfbo2/cool-seq-tool_6dcd9ffe79824be59169677bc61e3b09 has version 0.1.7, which satisfies requirement cool-seq-tool==0.1.7 from https://files.pythonhosted.org/packages/4b/df/488b4dfef14e53f0968a58917733cc8793f4b52217d13c3a5a07ec771c55/cool_seq_tool-0.1.7.tar.gz
2023-03-02T13:51:43,800   Removed cool-seq-tool==0.1.7 from https://files.pythonhosted.org/packages/4b/df/488b4dfef14e53f0968a58917733cc8793f4b52217d13c3a5a07ec771c55/cool_seq_tool-0.1.7.tar.gz from build tracker '/tmp/pip-build-tracker-cgsegp9u'
2023-03-02T13:51:43,806 Created temporary directory: /tmp/pip-unpack-wachnwul
2023-03-02T13:51:43,807 Building wheels for collected packages: cool-seq-tool
2023-03-02T13:51:43,812   Created temporary directory: /tmp/pip-wheel-ibgzfx4r
2023-03-02T13:51:43,812   Building wheel for cool-seq-tool (setup.py): started
2023-03-02T13:51:43,813   Destination directory: /tmp/pip-wheel-ibgzfx4r
2023-03-02T13:51:43,813   Running command python setup.py bdist_wheel
2023-03-02T13:51:44,758   running bdist_wheel
2023-03-02T13:51:45,033   running build
2023-03-02T13:51:45,034   running build_py
2023-03-02T13:51:45,060   creating build
2023-03-02T13:51:45,061   creating build/lib
2023-03-02T13:51:45,061   creating build/lib/cool_seq_tool
2023-03-02T13:51:45,063   copying cool_seq_tool/schemas.py -> build/lib/cool_seq_tool
2023-03-02T13:51:45,066   copying cool_seq_tool/cool_seq_tool.py -> build/lib/cool_seq_tool
2023-03-02T13:51:45,069   copying cool_seq_tool/__init__.py -> build/lib/cool_seq_tool
2023-03-02T13:51:45,071   copying cool_seq_tool/main.py -> build/lib/cool_seq_tool
2023-03-02T13:51:45,073   copying cool_seq_tool/version.py -> build/lib/cool_seq_tool
2023-03-02T13:51:45,076   creating build/lib/cool_seq_tool/data_sources
2023-03-02T13:51:45,077   copying cool_seq_tool/data_sources/transcript_mappings.py -> build/lib/cool_seq_tool/data_sources
2023-03-02T13:51:45,079   copying cool_seq_tool/data_sources/uta_database.py -> build/lib/cool_seq_tool/data_sources
2023-03-02T13:51:45,083   copying cool_seq_tool/data_sources/alignment_mapper.py -> build/lib/cool_seq_tool/data_sources
2023-03-02T13:51:45,085   copying cool_seq_tool/data_sources/seqrepo_access.py -> build/lib/cool_seq_tool/data_sources
2023-03-02T13:51:45,087   copying cool_seq_tool/data_sources/gene_normalizer.py -> build/lib/cool_seq_tool/data_sources
2023-03-02T13:51:45,090   copying cool_seq_tool/data_sources/__init__.py -> build/lib/cool_seq_tool/data_sources
2023-03-02T13:51:45,092   copying cool_seq_tool/data_sources/mane_transcript_mappings.py -> build/lib/cool_seq_tool/data_sources
2023-03-02T13:51:45,094   copying cool_seq_tool/data_sources/mane_transcript.py -> build/lib/cool_seq_tool/data_sources
2023-03-02T13:51:45,097   copying cool_seq_tool/data_sources/residue_mode.py -> build/lib/cool_seq_tool/data_sources
2023-03-02T13:51:45,100   creating build/lib/cool_seq_tool/data
2023-03-02T13:51:45,101   copying cool_seq_tool/data/__init__.py -> build/lib/cool_seq_tool/data
2023-03-02T13:51:45,103   copying cool_seq_tool/data/data_downloads.py -> build/lib/cool_seq_tool/data
2023-03-02T13:51:45,105   running egg_info
2023-03-02T13:51:45,161   writing cool_seq_tool.egg-info/PKG-INFO
2023-03-02T13:51:45,163   writing dependency_links to cool_seq_tool.egg-info/dependency_links.txt
2023-03-02T13:51:45,166   writing requirements to cool_seq_tool.egg-info/requires.txt
2023-03-02T13:51:45,167   writing top-level names to cool_seq_tool.egg-info/top_level.txt
2023-03-02T13:51:45,192   reading manifest file 'cool_seq_tool.egg-info/SOURCES.txt'
2023-03-02T13:51:45,195   adding license file 'LICENSE'
2023-03-02T13:51:45,197   writing manifest file 'cool_seq_tool.egg-info/SOURCES.txt'
2023-03-02T13:51:45,200   copying cool_seq_tool/data/transcript_mapping.tsv -> build/lib/cool_seq_tool/data
2023-03-02T13:51:45,643   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2023-03-02T13:51:45,644     warnings.warn(
2023-03-02T13:51:45,666   installing to build/bdist.linux-armv7l/wheel
2023-03-02T13:51:45,667   running install
2023-03-02T13:51:45,692   running install_lib
2023-03-02T13:51:45,716   creating build/bdist.linux-armv7l
2023-03-02T13:51:45,716   creating build/bdist.linux-armv7l/wheel
2023-03-02T13:51:45,719   creating build/bdist.linux-armv7l/wheel/cool_seq_tool
2023-03-02T13:51:45,720   copying build/lib/cool_seq_tool/schemas.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool
2023-03-02T13:51:45,723   copying build/lib/cool_seq_tool/cool_seq_tool.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool
2023-03-02T13:51:45,726   creating build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources
2023-03-02T13:51:45,727   copying build/lib/cool_seq_tool/data_sources/transcript_mappings.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources
2023-03-02T13:51:45,730   copying build/lib/cool_seq_tool/data_sources/uta_database.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources
2023-03-02T13:51:45,733   copying build/lib/cool_seq_tool/data_sources/alignment_mapper.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources
2023-03-02T13:51:45,736   copying build/lib/cool_seq_tool/data_sources/seqrepo_access.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources
2023-03-02T13:51:45,738   copying build/lib/cool_seq_tool/data_sources/gene_normalizer.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources
2023-03-02T13:51:45,740   copying build/lib/cool_seq_tool/data_sources/__init__.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources
2023-03-02T13:51:45,742   copying build/lib/cool_seq_tool/data_sources/mane_transcript_mappings.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources
2023-03-02T13:51:45,744   copying build/lib/cool_seq_tool/data_sources/mane_transcript.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources
2023-03-02T13:51:45,747   copying build/lib/cool_seq_tool/data_sources/residue_mode.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources
2023-03-02T13:51:45,749   copying build/lib/cool_seq_tool/__init__.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool
2023-03-02T13:51:45,752   creating build/bdist.linux-armv7l/wheel/cool_seq_tool/data
2023-03-02T13:51:45,753   copying build/lib/cool_seq_tool/data/transcript_mapping.tsv -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data
2023-03-02T13:51:46,234   copying build/lib/cool_seq_tool/data/__init__.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data
2023-03-02T13:51:46,236   copying build/lib/cool_seq_tool/data/data_downloads.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data
2023-03-02T13:51:46,238   copying build/lib/cool_seq_tool/main.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool
2023-03-02T13:51:46,241   copying build/lib/cool_seq_tool/version.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool
2023-03-02T13:51:46,242   running install_egg_info
2023-03-02T13:51:46,270   Copying cool_seq_tool.egg-info to build/bdist.linux-armv7l/wheel/cool_seq_tool-0.1.7-py3.9.egg-info
2023-03-02T13:51:46,285   running install_scripts
2023-03-02T13:51:46,304   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2023-03-02T13:51:46,309   creating build/bdist.linux-armv7l/wheel/cool_seq_tool-0.1.7.dist-info/WHEEL
2023-03-02T13:51:46,312   creating '/tmp/pip-wheel-ibgzfx4r/cool_seq_tool-0.1.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-03-02T13:51:46,314   adding 'cool_seq_tool/__init__.py'
2023-03-02T13:51:46,318   adding 'cool_seq_tool/cool_seq_tool.py'
2023-03-02T13:51:46,321   adding 'cool_seq_tool/main.py'
2023-03-02T13:51:46,324   adding 'cool_seq_tool/schemas.py'
2023-03-02T13:51:46,325   adding 'cool_seq_tool/version.py'
2023-03-02T13:51:46,327   adding 'cool_seq_tool/data/__init__.py'
2023-03-02T13:51:46,329   adding 'cool_seq_tool/data/data_downloads.py'
2023-03-02T13:51:48,997   adding 'cool_seq_tool/data/transcript_mapping.tsv'
2023-03-02T13:51:49,149   adding 'cool_seq_tool/data_sources/__init__.py'
2023-03-02T13:51:49,151   adding 'cool_seq_tool/data_sources/alignment_mapper.py'
2023-03-02T13:51:49,152   adding 'cool_seq_tool/data_sources/gene_normalizer.py'
2023-03-02T13:51:49,157   adding 'cool_seq_tool/data_sources/mane_transcript.py'
2023-03-02T13:51:49,159   adding 'cool_seq_tool/data_sources/mane_transcript_mappings.py'
2023-03-02T13:51:49,160   adding 'cool_seq_tool/data_sources/residue_mode.py'
2023-03-02T13:51:49,162   adding 'cool_seq_tool/data_sources/seqrepo_access.py'
2023-03-02T13:51:49,163   adding 'cool_seq_tool/data_sources/transcript_mappings.py'
2023-03-02T13:51:49,168   adding 'cool_seq_tool/data_sources/uta_database.py'
2023-03-02T13:51:49,171   adding 'cool_seq_tool-0.1.7.dist-info/LICENSE'
2023-03-02T13:51:49,172   adding 'cool_seq_tool-0.1.7.dist-info/METADATA'
2023-03-02T13:51:49,173   adding 'cool_seq_tool-0.1.7.dist-info/WHEEL'
2023-03-02T13:51:49,174   adding 'cool_seq_tool-0.1.7.dist-info/top_level.txt'
2023-03-02T13:51:49,175   adding 'cool_seq_tool-0.1.7.dist-info/RECORD'
2023-03-02T13:51:49,234   removing build/bdist.linux-armv7l/wheel
2023-03-02T13:51:49,340   Building wheel for cool-seq-tool (setup.py): finished with status 'done'
2023-03-02T13:51:49,387   Created wheel for cool-seq-tool: filename=cool_seq_tool-0.1.7-py3-none-any.whl size=4034978 sha256=6ebd28a20e3317ada82c3fc3d97c1d24a48fc0ef80fcb469cd23d49692da5d66
2023-03-02T13:51:49,388   Stored in directory: /tmp/pip-ephem-wheel-cache-mrvpsp56/wheels/73/1e/42/f4611c135f5e2703c1dad0278de5def1577abdb459c89069bd
2023-03-02T13:51:49,403 Successfully built cool-seq-tool
2023-03-02T13:51:49,534 Removed build tracker: '/tmp/pip-build-tracker-cgsegp9u'