2023-03-02T17:59:19,007 Created temporary directory: /tmp/pip-ephem-wheel-cache-ia7j307z 2023-03-02T17:59:19,012 Created temporary directory: /tmp/pip-build-tracker-2air5f1n 2023-03-02T17:59:19,013 Initialized build tracking at /tmp/pip-build-tracker-2air5f1n 2023-03-02T17:59:19,013 Created build tracker: /tmp/pip-build-tracker-2air5f1n 2023-03-02T17:59:19,014 Entered build tracker: /tmp/pip-build-tracker-2air5f1n 2023-03-02T17:59:19,015 Created temporary directory: /tmp/pip-wheel-38m6o_nd 2023-03-02T17:59:19,026 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-03-02T17:59:19,032 Created temporary directory: /tmp/pip-ephem-wheel-cache-fnr5z2v_ 2023-03-02T17:59:19,084 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-03-02T17:59:19,091 2 location(s) to search for versions of humann: 2023-03-02T17:59:19,091 * https://pypi.org/simple/humann/ 2023-03-02T17:59:19,091 * https://www.piwheels.org/simple/humann/ 2023-03-02T17:59:19,092 Fetching project page and analyzing links: https://pypi.org/simple/humann/ 2023-03-02T17:59:19,093 Getting page https://pypi.org/simple/humann/ 2023-03-02T17:59:19,097 Found index url https://pypi.org/simple 2023-03-02T17:59:19,340 Fetched page https://pypi.org/simple/humann/ as application/vnd.pypi.simple.v1+json 2023-03-02T17:59:19,348 Found link https://files.pythonhosted.org/packages/7e/3e/3b393eba794e3a05678192a46d6aefb86ae30b43c667b5b73afc65174b6c/humann-3.0.0-alpha.tar.gz (from https://pypi.org/simple/humann/), version: 3.0.0-alpha 2023-03-02T17:59:19,349 Found link https://files.pythonhosted.org/packages/bd/4e/54eb4908295e3ad3f7be801be19929b7094e32ab3e2d247086e74a1fd45f/humann-3.0.0a1.tar.gz (from https://pypi.org/simple/humann/), version: 3.0.0a1 2023-03-02T17:59:19,350 Found link https://files.pythonhosted.org/packages/9d/57/08aa836c56651f0a4e03f5883860a803bc4aabb2d1357df5f0d6f0841edf/humann-3.0.0a2.tar.gz (from https://pypi.org/simple/humann/), version: 3.0.0a2 2023-03-02T17:59:19,350 Found link https://files.pythonhosted.org/packages/40/3a/6cc67078d99ffb75ad12ae6d9506f54240b36b798ba34a3740ade52b16d0/humann-3.0.0a3.tar.gz (from https://pypi.org/simple/humann/), version: 3.0.0a3 2023-03-02T17:59:19,351 Found link https://files.pythonhosted.org/packages/d6/65/894e7a8de495de13e8ecf3b7c5cddee491aa11b5511c0c8f71e1d71a924b/humann-3.0.0a4.tar.gz (from https://pypi.org/simple/humann/), version: 3.0.0a4 2023-03-02T17:59:19,352 Found link https://files.pythonhosted.org/packages/36/b5/9bc5bf8c3dc5fe5db3fb10337d5a1381eb4e01b127054e7b65cc54bf66d3/humann-3.0.0.tar.gz (from https://pypi.org/simple/humann/), version: 3.0.0 2023-03-02T17:59:19,353 Found link https://files.pythonhosted.org/packages/27/f9/d07bd76dd7dd5732c4d29d58849e96e4828c8a7dc95cf7ae58622f37591a/humann-3.0.1.tar.gz (from https://pypi.org/simple/humann/), version: 3.0.1 2023-03-02T17:59:19,353 Found link https://files.pythonhosted.org/packages/e6/40/ed1f9edffaa90ce98fff7c4c57563329081af37c0e45eaaa935646aadd5b/humann-3.1.0.tar.gz (from https://pypi.org/simple/humann/), version: 3.1.0 2023-03-02T17:59:19,354 Found link https://files.pythonhosted.org/packages/7b/a1/5c27a82b4c4eb136a6a5cd36b1289727bc3260a09e04c915e279698c1a56/humann-3.1.1.tar.gz (from https://pypi.org/simple/humann/), version: 3.1.1 2023-03-02T17:59:19,354 Found link https://files.pythonhosted.org/packages/5e/b9/d05361b73e1ae3d15317eafece9bcd779c5249f37c64d6c2f5c0d7f60f10/humann-3.5.tar.gz (from https://pypi.org/simple/humann/), version: 3.5 2023-03-02T17:59:19,355 Found link https://files.pythonhosted.org/packages/38/f9/7869ca1c6d7824d235d045dc9e2ad0c1cd27570962803f73980354f2c6bf/humann-3.6.tar.gz (from https://pypi.org/simple/humann/), version: 3.6 2023-03-02T17:59:19,356 Found link https://files.pythonhosted.org/packages/79/02/184aef0cea1ad47be1dc5a9227096dbce5db190f6ed1f164e352f85ca257/humann-3.6.1.tar.gz (from https://pypi.org/simple/humann/), version: 3.6.1 2023-03-02T17:59:19,357 Fetching project page and analyzing links: https://www.piwheels.org/simple/humann/ 2023-03-02T17:59:19,357 Getting page https://www.piwheels.org/simple/humann/ 2023-03-02T17:59:19,359 Found index url https://www.piwheels.org/simple 2023-03-02T17:59:19,566 Fetched page https://www.piwheels.org/simple/humann/ as text/html 2023-03-02T17:59:19,576 Skipping link: No binaries permitted for humann: https://www.piwheels.org/simple/humann/humann-3.6-py3-none-any.whl#sha256=c75da53695562b4d448176ae87a1163d78cca7ce803019fd9d71e4d228e737db (from https://www.piwheels.org/simple/humann/) 2023-03-02T17:59:19,576 Skipping link: No binaries permitted for humann: https://www.piwheels.org/simple/humann/humann-3.5-py3-none-any.whl#sha256=babd194ed5911f8f7ff83afd42101bc61188b193f2f84da75bb35fc6f6b9143c (from https://www.piwheels.org/simple/humann/) 2023-03-02T17:59:19,577 Skipping link: No binaries permitted for humann: https://www.piwheels.org/simple/humann/humann-3.1.1-py3-none-any.whl#sha256=c02728bf036d36d0217624152a2bcf92578d21ae959dddd11be39e82886c4d2c (from https://www.piwheels.org/simple/humann/) 2023-03-02T17:59:19,577 Skipping link: No binaries permitted for humann: https://www.piwheels.org/simple/humann/humann-3.1.0-py3-none-any.whl#sha256=04a5fc83729249e6cadb49919a45f9cbbfbb1809ead5ace32fd7b03d0c567e13 (from https://www.piwheels.org/simple/humann/) 2023-03-02T17:59:19,578 Skipping link: No binaries permitted for humann: https://www.piwheels.org/simple/humann/humann-3.0.1-py3-none-any.whl#sha256=676cb6868a9fb7f68be659cc08fff68a9158ff6e235a16c23913dc95dba6b520 (from https://www.piwheels.org/simple/humann/) 2023-03-02T17:59:19,579 Skipping link: No binaries permitted for humann: https://www.piwheels.org/simple/humann/humann-3.0.0-py3-none-any.whl#sha256=3772cfdcae8a82be794eebf43e2f1a961d808403de544ac283efefd618ff9c1f (from https://www.piwheels.org/simple/humann/) 2023-03-02T17:59:19,579 Skipping link: No binaries permitted for humann: https://www.piwheels.org/simple/humann/humann-3.0.0a4-py3-none-any.whl#sha256=92213a167d814f391bdcc36810255dead615275e60bc595960427447d783a2df (from https://www.piwheels.org/simple/humann/) 2023-03-02T17:59:19,580 Skipping link: No binaries permitted for humann: https://www.piwheels.org/simple/humann/humann-3.0.0a3-py3-none-any.whl#sha256=3cd01a2e6311527512b74debac25e6c03b20fbfbb68d08e103e4645800674c2c (from https://www.piwheels.org/simple/humann/) 2023-03-02T17:59:19,580 Skipping link: No binaries permitted for humann: https://www.piwheels.org/simple/humann/humann-3.0.0a2-py3-none-any.whl#sha256=77e67b553032a8f63c4e300d44bdefade70b09de2cf20b0c4dac37558ea30aab (from https://www.piwheels.org/simple/humann/) 2023-03-02T17:59:19,581 Skipping link: No binaries permitted for humann: https://www.piwheels.org/simple/humann/humann-3.0.0a1-py3-none-any.whl#sha256=fb5fb61ea5d9aa5cc63d242cbe22673227fe574774b41ca464ea79c4a902c071 (from https://www.piwheels.org/simple/humann/) 2023-03-02T17:59:19,581 Skipping link: No binaries permitted for humann: https://www.piwheels.org/simple/humann/humann-3.0.0a0-py3-none-any.whl#sha256=bb5187dad66ed6d7a2dad529b671825d8d3a3a244ff9e0cd8118a842086496f4 (from https://www.piwheels.org/simple/humann/) 2023-03-02T17:59:19,582 Skipping link: not a file: https://www.piwheels.org/simple/humann/ 2023-03-02T17:59:19,582 Skipping link: not a file: https://pypi.org/simple/humann/ 2023-03-02T17:59:19,617 Given no hashes to check 1 links for project 'humann': discarding no candidates 2023-03-02T17:59:19,647 Collecting humann==3.6.1 2023-03-02T17:59:19,651 Created temporary directory: /tmp/pip-unpack-c568impc 2023-03-02T17:59:19,925 Downloading humann-3.6.1.tar.gz (106.9 MB) 2023-03-02T18:00:12,469 Added humann==3.6.1 from https://files.pythonhosted.org/packages/79/02/184aef0cea1ad47be1dc5a9227096dbce5db190f6ed1f164e352f85ca257/humann-3.6.1.tar.gz to build tracker '/tmp/pip-build-tracker-2air5f1n' 2023-03-02T18:00:12,475 Running setup.py (path:/tmp/pip-wheel-38m6o_nd/humann_144365f949214baa8a2e468556df9cf7/setup.py) egg_info for package humann 2023-03-02T18:00:12,477 Created temporary directory: /tmp/pip-pip-egg-info-p5ktutcw 2023-03-02T18:00:12,477 Preparing metadata (setup.py): started 2023-03-02T18:00:12,479 Running command python setup.py egg_info 2023-03-02T18:00:14,072 running egg_info 2023-03-02T18:00:14,081 creating /tmp/pip-pip-egg-info-p5ktutcw/humann.egg-info 2023-03-02T18:00:14,135 writing /tmp/pip-pip-egg-info-p5ktutcw/humann.egg-info/PKG-INFO 2023-03-02T18:00:14,140 writing dependency_links to /tmp/pip-pip-egg-info-p5ktutcw/humann.egg-info/dependency_links.txt 2023-03-02T18:00:14,146 writing entry points to /tmp/pip-pip-egg-info-p5ktutcw/humann.egg-info/entry_points.txt 2023-03-02T18:00:14,150 writing top-level names to /tmp/pip-pip-egg-info-p5ktutcw/humann.egg-info/top_level.txt 2023-03-02T18:00:14,152 writing manifest file '/tmp/pip-pip-egg-info-p5ktutcw/humann.egg-info/SOURCES.txt' 2023-03-02T18:00:14,396 reading manifest file '/tmp/pip-pip-egg-info-p5ktutcw/humann.egg-info/SOURCES.txt' 2023-03-02T18:00:14,399 reading manifest template 'MANIFEST.in' 2023-03-02T18:00:14,404 warning: no files found matching 'humann/tools/README.txt' 2023-03-02T18:00:14,405 warning: no files found matching 'humann/maintenance/README.md' 2023-03-02T18:00:14,406 warning: no files found matching 'humann/maintenance/metacyc_swissprot_trembl_reference_databases.md' 2023-03-02T18:00:14,408 no previously-included directories found matching 'humann/quantify/MinPath' 2023-03-02T18:00:14,410 warning: no previously-included files found matching 'humann/data/misc/map_eggnog_name.txt.gz' 2023-03-02T18:00:14,413 warning: no previously-included files found matching 'humann/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' 2023-03-02T18:00:14,415 warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref50.txt.gz' 2023-03-02T18:00:14,417 warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref90.txt.gz' 2023-03-02T18:00:14,420 warning: no previously-included files found matching 'humann/data/misc/map_uniref90_name.txt.bz2' 2023-03-02T18:00:14,422 warning: no previously-included files found matching 'humann/data/misc/map_go_uniref50.txt.gz' 2023-03-02T18:00:14,424 warning: no previously-included files found matching 'humann/data/misc/map_go_uniref90.txt.gz' 2023-03-02T18:00:14,426 warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref50.txt.gz' 2023-03-02T18:00:14,428 warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref90.txt.gz' 2023-03-02T18:00:14,431 warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref50.txt.gz' 2023-03-02T18:00:14,433 warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref90.txt.gz' 2023-03-02T18:00:14,435 warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref50.txt.gz' 2023-03-02T18:00:14,437 warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref90.txt.gz' 2023-03-02T18:00:14,439 warning: no previously-included files found matching 'humann/data/misc/uniref50-tol-lca.dat.gz' 2023-03-02T18:00:14,441 warning: no previously-included files found matching 'humann/data/misc/uniref90-tol-lca.dat.gz' 2023-03-02T18:00:14,444 warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref50.txt.gz' 2023-03-02T18:00:14,446 warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref90.txt.gz' 2023-03-02T18:00:14,446 adding license file 'LICENSE' 2023-03-02T18:00:14,470 writing manifest file '/tmp/pip-pip-egg-info-p5ktutcw/humann.egg-info/SOURCES.txt' 2023-03-02T18:00:14,598 Preparing metadata (setup.py): finished with status 'done' 2023-03-02T18:00:14,611 Source in /tmp/pip-wheel-38m6o_nd/humann_144365f949214baa8a2e468556df9cf7 has version 3.6.1, which satisfies requirement humann==3.6.1 from https://files.pythonhosted.org/packages/79/02/184aef0cea1ad47be1dc5a9227096dbce5db190f6ed1f164e352f85ca257/humann-3.6.1.tar.gz 2023-03-02T18:00:14,613 Removed humann==3.6.1 from https://files.pythonhosted.org/packages/79/02/184aef0cea1ad47be1dc5a9227096dbce5db190f6ed1f164e352f85ca257/humann-3.6.1.tar.gz from build tracker '/tmp/pip-build-tracker-2air5f1n' 2023-03-02T18:00:14,622 Created temporary directory: /tmp/pip-unpack-2og5948m 2023-03-02T18:00:14,623 Building wheels for collected packages: humann 2023-03-02T18:00:14,633 Created temporary directory: /tmp/pip-wheel-rg566ne0 2023-03-02T18:00:14,634 Building wheel for humann (setup.py): started 2023-03-02T18:00:14,636 Destination directory: /tmp/pip-wheel-rg566ne0 2023-03-02T18:00:14,636 Running command python setup.py bdist_wheel 2023-03-02T18:00:16,617 running bdist_wheel 2023-03-02T18:00:16,782 running build 2023-03-02T18:00:16,782 running build_py 2023-03-02T18:00:16,843 creating build 2023-03-02T18:00:16,844 creating build/lib 2023-03-02T18:00:16,845 creating build/lib/humann 2023-03-02T18:00:16,848 copying humann/config.py -> build/lib/humann 2023-03-02T18:00:16,853 copying humann/check.py -> build/lib/humann 2023-03-02T18:00:16,856 copying humann/utilities.py -> build/lib/humann 2023-03-02T18:00:16,862 copying humann/store.py -> build/lib/humann 2023-03-02T18:00:16,869 copying humann/humann.py -> build/lib/humann 2023-03-02T18:00:16,875 copying humann/__init__.py -> build/lib/humann 2023-03-02T18:00:16,879 creating build/lib/humann/quantify 2023-03-02T18:00:16,881 copying humann/quantify/MinPath12hmp.py -> build/lib/humann/quantify 2023-03-02T18:00:16,887 copying humann/quantify/chi2cdf.py -> build/lib/humann/quantify 2023-03-02T18:00:16,891 copying humann/quantify/xipe.py -> build/lib/humann/quantify 2023-03-02T18:00:16,895 copying humann/quantify/families.py -> build/lib/humann/quantify 2023-03-02T18:00:16,899 copying humann/quantify/modules.py -> build/lib/humann/quantify 2023-03-02T18:00:16,904 copying humann/quantify/__init__.py -> build/lib/humann/quantify 2023-03-02T18:00:16,909 creating build/lib/humann/search 2023-03-02T18:00:16,911 copying humann/search/pick_frames.py -> build/lib/humann/search 2023-03-02T18:00:16,915 copying humann/search/nucleotide.py -> build/lib/humann/search 2023-03-02T18:00:16,920 copying humann/search/translated.py -> build/lib/humann/search 2023-03-02T18:00:16,924 copying humann/search/blastx_coverage.py -> build/lib/humann/search 2023-03-02T18:00:16,928 copying humann/search/prescreen.py -> build/lib/humann/search 2023-03-02T18:00:16,932 copying humann/search/__init__.py -> build/lib/humann/search 2023-03-02T18:00:16,938 creating build/lib/humann/tests 2023-03-02T18:00:16,940 copying humann/tests/functional_tests_tools.py -> build/lib/humann/tests 2023-03-02T18:00:16,944 copying humann/tests/functional_tests_humann.py -> build/lib/humann/tests 2023-03-02T18:00:16,949 copying humann/tests/advanced_tests_nucleotide_search.py -> build/lib/humann/tests 2023-03-02T18:00:16,954 copying humann/tests/cfg.py -> build/lib/humann/tests 2023-03-02T18:00:16,958 copying humann/tests/advanced_tests_quantify_modules.py -> build/lib/humann/tests 2023-03-02T18:00:16,964 copying humann/tests/advanced_tests_quantify_families.py -> build/lib/humann/tests 2023-03-02T18:00:16,968 copying humann/tests/utils.py -> build/lib/humann/tests 2023-03-02T18:00:16,972 copying humann/tests/functional_tests_biom_tools.py -> build/lib/humann/tests 2023-03-02T18:00:16,976 copying humann/tests/advanced_tests_translated_search.py -> build/lib/humann/tests 2023-03-02T18:00:16,980 copying humann/tests/basic_tests_utilities.py -> build/lib/humann/tests 2023-03-02T18:00:16,985 copying humann/tests/basic_tests_quantify_modules.py -> build/lib/humann/tests 2023-03-02T18:00:16,990 copying humann/tests/humann_test.py -> build/lib/humann/tests 2023-03-02T18:00:16,994 copying humann/tests/advanced_tests_utilities.py -> build/lib/humann/tests 2023-03-02T18:00:16,997 copying humann/tests/advanced_tests_store.py -> build/lib/humann/tests 2023-03-02T18:00:17,002 copying humann/tests/functional_tests_biom_humann.py -> build/lib/humann/tests 2023-03-02T18:00:17,006 copying humann/tests/basic_tests_store.py -> build/lib/humann/tests 2023-03-02T18:00:17,012 copying humann/tests/basic_tests_nucleotide_search.py -> build/lib/humann/tests 2023-03-02T18:00:17,016 copying humann/tests/advanced_tests_blastx_coverage.py -> build/lib/humann/tests 2023-03-02T18:00:17,020 copying humann/tests/__init__.py -> build/lib/humann/tests 2023-03-02T18:00:17,026 creating build/lib/humann/tools 2023-03-02T18:00:17,028 copying humann/tools/split_table.py -> build/lib/humann/tools 2023-03-02T18:00:17,033 copying humann/tools/rename_table.py -> build/lib/humann/tools 2023-03-02T18:00:17,037 copying humann/tools/genefamilies_genus_level.py -> build/lib/humann/tools 2023-03-02T18:00:17,040 copying humann/tools/split_stratified_table.py -> build/lib/humann/tools 2023-03-02T18:00:17,044 copying humann/tools/util.py -> build/lib/humann/tools 2023-03-02T18:00:17,049 copying humann/tools/renorm_table.py -> build/lib/humann/tools 2023-03-02T18:00:17,053 copying humann/tools/merge_abundance.py -> build/lib/humann/tools 2023-03-02T18:00:17,057 copying humann/tools/rna_dna_norm.py -> build/lib/humann/tools 2023-03-02T18:00:17,061 copying humann/tools/humann_expand_results_taxonomy.py -> build/lib/humann/tools 2023-03-02T18:00:17,066 copying humann/tools/humann_databases.py -> build/lib/humann/tools 2023-03-02T18:00:17,070 copying humann/tools/humann_barplot.py -> build/lib/humann/tools 2023-03-02T18:00:17,075 copying humann/tools/humann_benchmark.py -> build/lib/humann/tools 2023-03-02T18:00:17,078 copying humann/tools/expand_cluster.py -> build/lib/humann/tools 2023-03-02T18:00:17,082 copying humann/tools/humann_humann1_kegg.py -> build/lib/humann/tools 2023-03-02T18:00:17,087 copying humann/tools/regroup_table.py -> build/lib/humann/tools 2023-03-02T18:00:17,091 copying humann/tools/humann_associate.py -> build/lib/humann/tools 2023-03-02T18:00:17,095 copying humann/tools/infer_taxonomy.py -> build/lib/humann/tools 2023-03-02T18:00:17,099 copying humann/tools/reduce_table.py -> build/lib/humann/tools 2023-03-02T18:00:17,103 copying humann/tools/build_custom_database.py -> build/lib/humann/tools 2023-03-02T18:00:17,108 copying humann/tools/humann_config.py -> build/lib/humann/tools 2023-03-02T18:00:17,111 copying humann/tools/join_tables.py -> build/lib/humann/tools 2023-03-02T18:00:17,115 copying humann/tools/strain_profiler.py -> build/lib/humann/tools 2023-03-02T18:00:17,119 copying humann/tools/__init__.py -> build/lib/humann/tools 2023-03-02T18:00:17,166 copying humann/humann.cfg -> build/lib/humann 2023-03-02T18:00:17,171 creating build/lib/humann/data 2023-03-02T18:00:17,172 creating build/lib/humann/data/pathways 2023-03-02T18:00:17,174 copying humann/data/pathways/unipathway_uniprots.uniref.bz2 -> build/lib/humann/data/pathways 2023-03-02T18:00:17,232 copying humann/data/pathways/metacyc_pathways_structured_filtered -> build/lib/humann/data/pathways 2023-03-02T18:00:17,245 copying humann/data/pathways/metacyc_pathways_structured_v24 -> build/lib/humann/data/pathways 2023-03-02T18:00:17,266 copying humann/data/pathways/metacyc_pathways_structured_filtered_v24 -> build/lib/humann/data/pathways 2023-03-02T18:00:17,281 copying humann/data/pathways/metacyc_pathways_structured -> build/lib/humann/data/pathways 2023-03-02T18:00:17,299 copying humann/data/pathways/metacyc_pathways -> build/lib/humann/data/pathways 2023-03-02T18:00:17,316 copying humann/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2 -> build/lib/humann/data/pathways 2023-03-02T18:00:19,804 copying humann/data/pathways/metacyc_pathways_to_organisms -> build/lib/humann/data/pathways 2023-03-02T18:00:19,819 copying humann/data/pathways/unipathway_pathways -> build/lib/humann/data/pathways 2023-03-02T18:00:19,881 creating build/lib/humann/data/misc 2023-03-02T18:00:19,882 copying humann/data/misc/map_ko_name.txt.gz -> build/lib/humann/data/misc 2023-03-02T18:00:19,898 copying humann/data/misc/KeggOrgId2OrgNameTable.txt -> build/lib/humann/data/misc 2023-03-02T18:00:19,912 copying humann/data/misc/map_metacyc-pwy_name.txt.gz -> build/lib/humann/data/misc 2023-03-02T18:00:19,919 copying humann/data/misc/map_kegg-pwy_name.txt.gz -> build/lib/humann/data/misc 2023-03-02T18:00:19,923 copying humann/data/misc/map_go_name.txt.gz -> build/lib/humann/data/misc 2023-03-02T18:00:19,952 copying humann/data/misc/mpa_vJan21_CHOCOPhlAnSGB_202103.tsv -> build/lib/humann/data/misc 2023-03-02T18:00:20,013 copying humann/data/misc/map_level4ec_name.txt.gz -> build/lib/humann/data/misc 2023-03-02T18:00:20,021 copying humann/data/misc/map_kegg-mdl_name.txt.gz -> build/lib/humann/data/misc 2023-03-02T18:00:20,034 copying humann/data/misc/map_uniref50_name.txt.bz2 -> build/lib/humann/data/misc 2023-03-02T18:00:21,652 copying humann/data/misc/README.txt -> build/lib/humann/data/misc 2023-03-02T18:00:21,656 copying humann/data/misc/map_metacyc-rxn_name.txt.gz -> build/lib/humann/data/misc 2023-03-02T18:00:21,671 copying humann/data/misc/map_transporter_uniref50.txt.gz -> build/lib/humann/data/misc 2023-03-02T18:00:21,676 copying humann/data/misc/map_pfam_name.txt.gz -> build/lib/humann/data/misc 2023-03-02T18:00:21,693 creating build/lib/humann/data/uniref_DEMO 2023-03-02T18:00:21,695 copying humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.fna -> build/lib/humann/data/uniref_DEMO 2023-03-02T18:00:21,701 copying humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.dmnd -> build/lib/humann/data/uniref_DEMO 2023-03-02T18:00:21,707 creating build/lib/humann/data/chocophlan_DEMO 2023-03-02T18:00:21,709 copying humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v201901_v31.ffn.gz -> build/lib/humann/data/chocophlan_DEMO 2023-03-02T18:00:21,853 copying humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v201901_v31.ffn.gz -> build/lib/humann/data/chocophlan_DEMO 2023-03-02T18:00:22,047 creating build/lib/humann/tests/data 2023-03-02T18:00:22,049 copying humann/tests/data/gene_families.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,054 copying humann/tests/data/small_map_uniref50_name.txt.gz -> build/lib/humann/tests/data 2023-03-02T18:00:22,058 copying humann/tests/data/multi_sample_biom_genefamilies_sample1.biom -> build/lib/humann/tests/data 2023-03-02T18:00:22,065 copying humann/tests/data/file_with_header.sam -> build/lib/humann/tests/data 2023-03-02T18:00:22,069 copying humann/tests/data/rapsearch2_output_with_header.m8 -> build/lib/humann/tests/data 2023-03-02T18:00:22,074 copying humann/tests/data/test_pathways_flat.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,078 copying humann/tests/data/demo.m8 -> build/lib/humann/tests/data 2023-03-02T18:00:22,087 copying humann/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8 -> build/lib/humann/tests/data 2023-03-02T18:00:22,091 copying humann/tests/data/file_single_line_sequences.fasta -> build/lib/humann/tests/data 2023-03-02T18:00:22,096 copying humann/tests/data/rapsearch2_output_with_header_no_log.m8 -> build/lib/humann/tests/data 2023-03-02T18:00:22,100 copying humann/tests/data/file_without_header.sam -> build/lib/humann/tests/data 2023-03-02T18:00:22,104 copying humann/tests/data/id_mapping.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,108 copying humann/tests/data/demo.sam -> build/lib/humann/tests/data 2023-03-02T18:00:22,229 copying humann/tests/data/convert_file_pick_frames.fasta -> build/lib/humann/tests/data 2023-03-02T18:00:22,234 copying humann/tests/data/demo_genefamilies_with_names.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,250 copying humann/tests/data/multi_sample_genefamilies_sample1.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,255 copying humann/tests/data/id_mapping_coverage_filter.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,259 copying humann/tests/data/file.fastq -> build/lib/humann/tests/data 2023-03-02T18:00:22,264 copying humann/tests/data/id_mapping_gene_table.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,268 copying humann/tests/data/annotations.m8 -> build/lib/humann/tests/data 2023-03-02T18:00:22,272 copying humann/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8 -> build/lib/humann/tests/data 2023-03-02T18:00:22,277 copying humann/tests/data/file.bam -> build/lib/humann/tests/data 2023-03-02T18:00:22,281 copying humann/tests/data/test_pathways_results.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,285 copying humann/tests/data/file_without_header_with_tags.sam -> build/lib/humann/tests/data 2023-03-02T18:00:22,289 copying humann/tests/data/multi_sample_genefamilies.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,294 copying humann/tests/data/genefamilies.biom -> build/lib/humann/tests/data 2023-03-02T18:00:22,300 copying humann/tests/data/demo_pathabundance_with_names.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,304 copying humann/tests/data/demo.fasta -> build/lib/humann/tests/data 2023-03-02T18:00:22,452 copying humann/tests/data/rapsearch2_output_without_header_coverage_filter.m8 -> build/lib/humann/tests/data 2023-03-02T18:00:22,456 copying humann/tests/data/demo_pathcoverage_with_names.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,460 copying humann/tests/data/convert_file_at_character.fastq -> build/lib/humann/tests/data 2023-03-02T18:00:22,464 copying humann/tests/data/reactions.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,468 copying humann/tests/data/file_space_identifier.fastq -> build/lib/humann/tests/data 2023-03-02T18:00:22,472 copying humann/tests/data/convert_file_multiline.fasta -> build/lib/humann/tests/data 2023-03-02T18:00:22,476 copying humann/tests/data/gene_families_uniref50_with_names.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,480 copying humann/tests/data/genefamilies_biom_match.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,484 copying humann/tests/data/demo_metaphlan_bugs_list.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,488 copying humann/tests/data/convert_file.fasta -> build/lib/humann/tests/data 2023-03-02T18:00:22,492 copying humann/tests/data/file.fasta -> build/lib/humann/tests/data 2023-03-02T18:00:22,496 copying humann/tests/data/2_aligned_3_unaligned.sam -> build/lib/humann/tests/data 2023-03-02T18:00:22,500 copying humann/tests/data/rapsearch2_output_without_header.m8 -> build/lib/humann/tests/data 2023-03-02T18:00:22,504 copying humann/tests/data/multi_sample_genefamilies.biom -> build/lib/humann/tests/data 2023-03-02T18:00:22,510 copying humann/tests/data/convert_file.fastq -> build/lib/humann/tests/data 2023-03-02T18:00:22,514 copying humann/tests/data/annotations.sam -> build/lib/humann/tests/data 2023-03-02T18:00:22,518 copying humann/tests/data/multi_sample_biom_genefamilies_sample2.biom -> build/lib/humann/tests/data 2023-03-02T18:00:22,525 copying humann/tests/data/multi_sample_genefamilies_sample2.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,529 copying humann/tests/data/usearch_with_uniref50_output.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,533 copying humann/tests/data/file_no_space_identifier.fastq -> build/lib/humann/tests/data 2023-03-02T18:00:22,537 copying humann/tests/data/usearch_output.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,541 copying humann/tests/data/demo_genefamilies.biom -> build/lib/humann/tests/data 2023-03-02T18:00:22,561 copying humann/tests/data/demo.fastq -> build/lib/humann/tests/data 2023-03-02T18:00:22,766 copying humann/tests/data/test_pathways.dat -> build/lib/humann/tests/data 2023-03-02T18:00:22,772 copying humann/tests/data/demo_genefamilies.tsv -> build/lib/humann/tests/data 2023-03-02T18:00:22,789 creating build/lib/humann/tests/data/tooltest-renorm_table 2023-03-02T18:00:22,792 copying humann/tests/data/tooltest-renorm_table/renorm_table-input.txt -> build/lib/humann/tests/data/tooltest-renorm_table 2023-03-02T18:00:22,796 copying humann/tests/data/tooltest-renorm_table/renorm_table-input.biom -> build/lib/humann/tests/data/tooltest-renorm_table 2023-03-02T18:00:22,803 copying humann/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt -> build/lib/humann/tests/data/tooltest-renorm_table 2023-03-02T18:00:22,807 copying humann/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt -> build/lib/humann/tests/data/tooltest-renorm_table 2023-03-02T18:00:22,811 copying humann/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom -> build/lib/humann/tests/data/tooltest-renorm_table 2023-03-02T18:00:22,818 copying humann/tests/data/tooltest-renorm_table/renorm_table-command.sh -> build/lib/humann/tests/data/tooltest-renorm_table 2023-03-02T18:00:22,822 creating build/lib/humann/tests/data/tooltest-merge_abundance_tables 2023-03-02T18:00:22,824 copying humann/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh -> build/lib/humann/tests/data/tooltest-merge_abundance_tables 2023-03-02T18:00:22,829 copying humann/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv -> build/lib/humann/tests/data/tooltest-merge_abundance_tables 2023-03-02T18:00:22,833 copying humann/tests/data/tooltest-merge_abundance_tables/merge_output.tsv -> build/lib/humann/tests/data/tooltest-merge_abundance_tables 2023-03-02T18:00:22,838 copying humann/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv -> build/lib/humann/tests/data/tooltest-merge_abundance_tables 2023-03-02T18:00:22,855 copying humann/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv -> build/lib/humann/tests/data/tooltest-merge_abundance_tables 2023-03-02T18:00:22,861 creating build/lib/humann/tests/data/tooltest-strain_profiler 2023-03-02T18:00:22,863 copying humann/tests/data/tooltest-strain_profiler/strain_profiler-command.sh -> build/lib/humann/tests/data/tooltest-strain_profiler 2023-03-02T18:00:22,867 copying humann/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv -> build/lib/humann/tests/data/tooltest-strain_profiler 2023-03-02T18:00:22,872 copying humann/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv -> build/lib/humann/tests/data/tooltest-strain_profiler 2023-03-02T18:00:22,876 copying humann/tests/data/tooltest-strain_profiler/strain_profiler-input.txt -> build/lib/humann/tests/data/tooltest-strain_profiler 2023-03-02T18:00:22,881 creating build/lib/humann/tests/data/tooltest-infer_taxonomy 2023-03-02T18:00:22,883 copying humann/tests/data/tooltest-infer_taxonomy/genes.tsv -> build/lib/humann/tests/data/tooltest-infer_taxonomy 2023-03-02T18:00:22,887 copying humann/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh -> build/lib/humann/tests/data/tooltest-infer_taxonomy 2023-03-02T18:00:22,892 copying humann/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv -> build/lib/humann/tests/data/tooltest-infer_taxonomy 2023-03-02T18:00:22,896 creating build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,898 copying humann/tests/data/tooltest-rename_table/rename_table-input_ko.txt -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,903 copying humann/tests/data/tooltest-rename_table/rename_table-input_ec.txt -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,908 copying humann/tests/data/tooltest-rename_table/rename_table-input.biom -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,915 copying humann/tests/data/tooltest-rename_table/rename_table-builtin_output.txt -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,919 copying humann/tests/data/tooltest-rename_table/rename_table-custom.sh -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,923 copying humann/tests/data/tooltest-rename_table/rename_table-custom_command.sh -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,928 copying humann/tests/data/tooltest-rename_table/rename_table-input_rxn.txt -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,932 copying humann/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,937 copying humann/tests/data/tooltest-rename_table/rename_table-builtin_command.sh -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,941 copying humann/tests/data/tooltest-rename_table/rename_table-input.txt -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,946 copying humann/tests/data/tooltest-rename_table/pathabundance_without_names.txt -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,951 copying humann/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,955 copying humann/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,960 copying humann/tests/data/tooltest-rename_table/rename_table-custom.txt.gz -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,964 copying humann/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,969 copying humann/tests/data/tooltest-rename_table/rename_table-custom_output.txt -> build/lib/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:22,973 creating build/lib/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:22,975 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:22,980 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:22,984 copying humann/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:22,989 copying humann/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh -> build/lib/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:22,993 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:22,998 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:23,002 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:23,007 copying humann/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:23,011 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:23,015 copying humann/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:23,019 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh -> build/lib/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:23,024 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom -> build/lib/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:23,030 creating build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,032 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,037 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,042 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,046 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,050 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,054 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,058 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,063 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,067 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,072 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,076 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,080 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,085 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,089 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-relative_expression.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,093 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:23,111 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-03-02T18:00:23,112 setuptools.SetuptoolsDeprecationWarning, 2023-03-02T18:00:23,171 installing to build/bdist.linux-armv7l/wheel 2023-03-02T18:00:23,171 running install 2023-03-02T18:00:23,230 Installing minpath. 2023-03-02T18:00:23,230 Downloading http://omics.informatics.indiana.edu/mg/get.php?justdoit=yes&software=minpath1.2.tar.gz 2023-03-02T18:00:24,050 0.01 MB 2023-03-02T18:00:24,051 0.02 MB 2023-03-02T18:00:24,052 0.02 MB 2023-03-02T18:00:24,142 0.03 MB 2023-03-02T18:00:24,143 0.04 MB 2023-03-02T18:00:24,145 0.05 MB 2023-03-02T18:00:24,146 0.05 MB 2023-03-02T18:00:24,147 0.06 MB 2023-03-02T18:00:24,149 0.07 MB 2023-03-02T18:00:24,150 0.08 MB 2023-03-02T18:00:24,234 0.09 MB 2023-03-02T18:00:24,235 0.09 MB 2023-03-02T18:00:24,237 0.10 MB 2023-03-02T18:00:24,240 0.11 MB 2023-03-02T18:00:24,241 0.12 MB 2023-03-02T18:00:24,242 0.12 MB 2023-03-02T18:00:24,243 0.13 MB 2023-03-02T18:00:24,245 0.14 MB 2023-03-02T18:00:24,246 0.15 MB 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2023-03-02T18:00:31,152 12.66 MB 2023-03-02T18:00:31,153 12.67 MB 2023-03-02T18:00:31,154 12.68 MB 2023-03-02T18:00:31,156 12.69 MB 2023-03-02T18:00:31,158 12.70 MB 2023-03-02T18:00:31,159 12.70 MB 2023-03-02T18:00:31,160 12.71 MB 2023-03-02T18:00:31,161 12.72 MB 2023-03-02T18:00:31,162 12.73 MB 2023-03-02T18:00:31,164 12.73 MB 2023-03-02T18:00:31,529 12.74 MB 2023-03-02T18:00:36,403 running install_lib 2023-03-02T18:00:36,462 creating build/bdist.linux-armv7l 2023-03-02T18:00:36,462 creating build/bdist.linux-armv7l/wheel 2023-03-02T18:00:36,466 creating build/bdist.linux-armv7l/wheel/humann 2023-03-02T18:00:36,468 copying build/lib/humann/humann.cfg -> build/bdist.linux-armv7l/wheel/humann 2023-03-02T18:00:36,473 creating build/bdist.linux-armv7l/wheel/humann/quantify 2023-03-02T18:00:36,475 copying build/lib/humann/quantify/MinPath12hmp.py -> build/bdist.linux-armv7l/wheel/humann/quantify 2023-03-02T18:00:36,482 copying build/lib/humann/quantify/chi2cdf.py -> build/bdist.linux-armv7l/wheel/humann/quantify 2023-03-02T18:00:36,486 copying build/lib/humann/quantify/xipe.py -> build/bdist.linux-armv7l/wheel/humann/quantify 2023-03-02T18:00:36,491 copying build/lib/humann/quantify/families.py -> build/bdist.linux-armv7l/wheel/humann/quantify 2023-03-02T18:00:36,494 copying build/lib/humann/quantify/modules.py -> build/bdist.linux-armv7l/wheel/humann/quantify 2023-03-02T18:00:36,500 copying build/lib/humann/quantify/__init__.py -> build/bdist.linux-armv7l/wheel/humann/quantify 2023-03-02T18:00:36,504 creating build/bdist.linux-armv7l/wheel/humann/search 2023-03-02T18:00:36,506 copying build/lib/humann/search/pick_frames.py -> build/bdist.linux-armv7l/wheel/humann/search 2023-03-02T18:00:36,510 copying build/lib/humann/search/nucleotide.py -> build/bdist.linux-armv7l/wheel/humann/search 2023-03-02T18:00:36,515 copying build/lib/humann/search/translated.py -> build/bdist.linux-armv7l/wheel/humann/search 2023-03-02T18:00:36,520 copying build/lib/humann/search/blastx_coverage.py -> build/bdist.linux-armv7l/wheel/humann/search 2023-03-02T18:00:36,524 copying build/lib/humann/search/prescreen.py -> build/bdist.linux-armv7l/wheel/humann/search 2023-03-02T18:00:36,529 copying build/lib/humann/search/__init__.py -> build/bdist.linux-armv7l/wheel/humann/search 2023-03-02T18:00:36,532 copying build/lib/humann/config.py -> build/bdist.linux-armv7l/wheel/humann 2023-03-02T18:00:36,537 copying build/lib/humann/check.py -> build/bdist.linux-armv7l/wheel/humann 2023-03-02T18:00:36,542 creating build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,544 copying build/lib/humann/tests/functional_tests_tools.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,548 copying build/lib/humann/tests/functional_tests_humann.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,553 copying build/lib/humann/tests/advanced_tests_nucleotide_search.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,558 copying build/lib/humann/tests/cfg.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,563 copying build/lib/humann/tests/advanced_tests_quantify_modules.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,569 copying build/lib/humann/tests/advanced_tests_quantify_families.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,574 copying build/lib/humann/tests/utils.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,578 copying build/lib/humann/tests/functional_tests_biom_tools.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,582 copying build/lib/humann/tests/advanced_tests_translated_search.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,587 copying build/lib/humann/tests/basic_tests_utilities.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,592 copying build/lib/humann/tests/basic_tests_quantify_modules.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,596 copying build/lib/humann/tests/humann_test.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,601 copying build/lib/humann/tests/advanced_tests_utilities.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,605 copying build/lib/humann/tests/advanced_tests_store.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,610 copying build/lib/humann/tests/functional_tests_biom_humann.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,613 copying build/lib/humann/tests/basic_tests_store.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,620 copying build/lib/humann/tests/basic_tests_nucleotide_search.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,625 copying build/lib/humann/tests/advanced_tests_blastx_coverage.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:36,632 creating build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,634 copying build/lib/humann/tests/data/gene_families.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,638 copying build/lib/humann/tests/data/small_map_uniref50_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,642 copying build/lib/humann/tests/data/multi_sample_biom_genefamilies_sample1.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,648 copying build/lib/humann/tests/data/file_with_header.sam -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,652 copying build/lib/humann/tests/data/rapsearch2_output_with_header.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,656 copying build/lib/humann/tests/data/test_pathways_flat.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,660 copying build/lib/humann/tests/data/demo.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,671 creating build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-renorm_table 2023-03-02T18:00:36,673 copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-input.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-renorm_table 2023-03-02T18:00:36,677 copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-input.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-renorm_table 2023-03-02T18:00:36,683 copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-renorm_table 2023-03-02T18:00:36,687 copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-renorm_table 2023-03-02T18:00:36,691 copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-renorm_table 2023-03-02T18:00:36,697 copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-renorm_table 2023-03-02T18:00:36,701 copying build/lib/humann/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,704 copying build/lib/humann/tests/data/file_single_line_sequences.fasta -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,708 copying build/lib/humann/tests/data/rapsearch2_output_with_header_no_log.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,712 creating build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-merge_abundance_tables 2023-03-02T18:00:36,714 copying build/lib/humann/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-merge_abundance_tables 2023-03-02T18:00:36,718 copying build/lib/humann/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-merge_abundance_tables 2023-03-02T18:00:36,721 copying build/lib/humann/tests/data/tooltest-merge_abundance_tables/merge_output.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-merge_abundance_tables 2023-03-02T18:00:36,726 copying build/lib/humann/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-merge_abundance_tables 2023-03-02T18:00:36,741 copying build/lib/humann/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-merge_abundance_tables 2023-03-02T18:00:36,746 creating build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-strain_profiler 2023-03-02T18:00:36,748 copying build/lib/humann/tests/data/tooltest-strain_profiler/strain_profiler-command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-strain_profiler 2023-03-02T18:00:36,752 copying build/lib/humann/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-strain_profiler 2023-03-02T18:00:36,756 copying build/lib/humann/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-strain_profiler 2023-03-02T18:00:36,760 copying build/lib/humann/tests/data/tooltest-strain_profiler/strain_profiler-input.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-strain_profiler 2023-03-02T18:00:36,763 copying build/lib/humann/tests/data/file_without_header.sam -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,767 copying build/lib/humann/tests/data/id_mapping.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,770 copying build/lib/humann/tests/data/demo.sam -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,887 copying build/lib/humann/tests/data/convert_file_pick_frames.fasta -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,892 copying build/lib/humann/tests/data/demo_genefamilies_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,908 copying build/lib/humann/tests/data/multi_sample_genefamilies_sample1.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,913 copying build/lib/humann/tests/data/id_mapping_coverage_filter.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,917 creating build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-infer_taxonomy 2023-03-02T18:00:36,919 copying build/lib/humann/tests/data/tooltest-infer_taxonomy/genes.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-infer_taxonomy 2023-03-02T18:00:36,923 copying build/lib/humann/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-infer_taxonomy 2023-03-02T18:00:36,927 copying build/lib/humann/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-infer_taxonomy 2023-03-02T18:00:36,931 copying build/lib/humann/tests/data/file.fastq -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,934 copying build/lib/humann/tests/data/id_mapping_gene_table.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:36,939 creating build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,941 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-input_ko.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,945 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-input_ec.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,948 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-input.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,954 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,958 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-custom.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,961 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-custom_command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,965 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-input_rxn.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,969 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,973 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,977 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-input.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,980 copying build/lib/humann/tests/data/tooltest-rename_table/pathabundance_without_names.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,984 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,988 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,992 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-custom.txt.gz -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,995 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:36,999 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-custom_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2023-03-02T18:00:37,003 copying build/lib/humann/tests/data/annotations.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,007 copying build/lib/humann/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,011 copying build/lib/humann/tests/data/file.bam -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,014 copying build/lib/humann/tests/data/test_pathways_results.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,018 copying build/lib/humann/tests/data/file_without_header_with_tags.sam -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,021 copying build/lib/humann/tests/data/multi_sample_genefamilies.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,028 copying build/lib/humann/tests/data/genefamilies.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,034 copying build/lib/humann/tests/data/demo_pathabundance_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,037 copying build/lib/humann/tests/data/demo.fasta -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,146 copying build/lib/humann/tests/data/rapsearch2_output_without_header_coverage_filter.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,149 copying build/lib/humann/tests/data/demo_pathcoverage_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,153 copying build/lib/humann/tests/data/convert_file_at_character.fastq -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,157 copying build/lib/humann/tests/data/reactions.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,160 copying build/lib/humann/tests/data/file_space_identifier.fastq -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,164 copying build/lib/humann/tests/data/convert_file_multiline.fasta -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,167 copying build/lib/humann/tests/data/gene_families_uniref50_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,172 creating build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:37,174 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:37,178 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:37,182 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:37,186 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:37,189 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:37,193 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:37,196 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:37,200 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:37,204 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:37,207 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:37,211 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:37,214 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2023-03-02T18:00:37,220 copying build/lib/humann/tests/data/genefamilies_biom_match.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,223 copying build/lib/humann/tests/data/demo_metaphlan_bugs_list.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,227 copying build/lib/humann/tests/data/convert_file.fasta -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,231 copying build/lib/humann/tests/data/file.fasta -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,234 copying build/lib/humann/tests/data/2_aligned_3_unaligned.sam -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,238 copying build/lib/humann/tests/data/rapsearch2_output_without_header.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,241 copying build/lib/humann/tests/data/multi_sample_genefamilies.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,247 copying build/lib/humann/tests/data/convert_file.fastq -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,250 copying build/lib/humann/tests/data/annotations.sam -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,254 copying build/lib/humann/tests/data/multi_sample_biom_genefamilies_sample2.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,260 copying build/lib/humann/tests/data/multi_sample_genefamilies_sample2.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,264 copying build/lib/humann/tests/data/usearch_with_uniref50_output.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,268 copying build/lib/humann/tests/data/file_no_space_identifier.fastq -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,271 copying build/lib/humann/tests/data/usearch_output.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,275 copying build/lib/humann/tests/data/demo_genefamilies.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,293 copying build/lib/humann/tests/data/demo.fastq -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,553 creating build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,555 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,559 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,562 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,566 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,569 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,573 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,576 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,579 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,584 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,587 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,591 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,594 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,597 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,601 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,604 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2023-03-02T18:00:37,607 copying build/lib/humann/tests/data/test_pathways.dat -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,613 copying build/lib/humann/tests/data/demo_genefamilies.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2023-03-02T18:00:37,630 copying build/lib/humann/tests/__init__.py -> build/bdist.linux-armv7l/wheel/humann/tests 2023-03-02T18:00:37,633 copying build/lib/humann/utilities.py -> build/bdist.linux-armv7l/wheel/humann 2023-03-02T18:00:37,642 creating build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,643 copying build/lib/humann/tools/split_table.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,648 copying build/lib/humann/tools/rename_table.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,653 copying build/lib/humann/tools/genefamilies_genus_level.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,656 copying build/lib/humann/tools/split_stratified_table.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,660 copying build/lib/humann/tools/util.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,665 copying build/lib/humann/tools/renorm_table.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,668 copying build/lib/humann/tools/merge_abundance.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,673 copying build/lib/humann/tools/rna_dna_norm.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,677 copying build/lib/humann/tools/humann_expand_results_taxonomy.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,681 copying build/lib/humann/tools/humann_databases.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,685 copying build/lib/humann/tools/humann_barplot.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,691 copying build/lib/humann/tools/humann_benchmark.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,695 copying build/lib/humann/tools/expand_cluster.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,698 copying build/lib/humann/tools/humann_humann1_kegg.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,703 copying build/lib/humann/tools/regroup_table.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,707 copying build/lib/humann/tools/humann_associate.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,712 copying build/lib/humann/tools/infer_taxonomy.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,716 copying build/lib/humann/tools/reduce_table.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,720 copying build/lib/humann/tools/build_custom_database.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,724 copying build/lib/humann/tools/humann_config.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,728 copying build/lib/humann/tools/join_tables.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,733 copying build/lib/humann/tools/strain_profiler.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,737 copying build/lib/humann/tools/__init__.py -> build/bdist.linux-armv7l/wheel/humann/tools 2023-03-02T18:00:37,740 copying build/lib/humann/store.py -> build/bdist.linux-armv7l/wheel/humann 2023-03-02T18:00:37,746 copying build/lib/humann/humann.py -> build/bdist.linux-armv7l/wheel/humann 2023-03-02T18:00:37,754 creating build/bdist.linux-armv7l/wheel/humann/data 2023-03-02T18:00:37,757 creating build/bdist.linux-armv7l/wheel/humann/data/uniref_DEMO 2023-03-02T18:00:37,759 copying build/lib/humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.fna -> build/bdist.linux-armv7l/wheel/humann/data/uniref_DEMO 2023-03-02T18:00:37,764 copying build/lib/humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.dmnd -> build/bdist.linux-armv7l/wheel/humann/data/uniref_DEMO 2023-03-02T18:00:37,771 creating build/bdist.linux-armv7l/wheel/humann/data/misc 2023-03-02T18:00:37,772 copying build/lib/humann/data/misc/map_ko_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2023-03-02T18:00:37,785 copying build/lib/humann/data/misc/KeggOrgId2OrgNameTable.txt -> build/bdist.linux-armv7l/wheel/humann/data/misc 2023-03-02T18:00:37,795 copying build/lib/humann/data/misc/map_metacyc-pwy_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2023-03-02T18:00:37,801 copying build/lib/humann/data/misc/map_kegg-pwy_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2023-03-02T18:00:37,805 copying build/lib/humann/data/misc/map_go_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2023-03-02T18:00:37,831 copying build/lib/humann/data/misc/mpa_vJan21_CHOCOPhlAnSGB_202103.tsv -> build/bdist.linux-armv7l/wheel/humann/data/misc 2023-03-02T18:00:37,900 copying build/lib/humann/data/misc/map_level4ec_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2023-03-02T18:00:37,907 copying build/lib/humann/data/misc/map_kegg-mdl_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2023-03-02T18:00:37,919 copying build/lib/humann/data/misc/map_uniref50_name.txt.bz2 -> build/bdist.linux-armv7l/wheel/humann/data/misc 2023-03-02T18:00:39,168 copying build/lib/humann/data/misc/README.txt -> build/bdist.linux-armv7l/wheel/humann/data/misc 2023-03-02T18:00:39,172 copying build/lib/humann/data/misc/map_metacyc-rxn_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2023-03-02T18:00:39,184 copying build/lib/humann/data/misc/map_transporter_uniref50.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2023-03-02T18:00:39,187 copying build/lib/humann/data/misc/map_pfam_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2023-03-02T18:00:39,202 creating build/bdist.linux-armv7l/wheel/humann/data/chocophlan_DEMO 2023-03-02T18:00:39,204 copying build/lib/humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v201901_v31.ffn.gz -> build/bdist.linux-armv7l/wheel/humann/data/chocophlan_DEMO 2023-03-02T18:00:39,364 copying build/lib/humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v201901_v31.ffn.gz -> build/bdist.linux-armv7l/wheel/humann/data/chocophlan_DEMO 2023-03-02T18:00:39,604 creating build/bdist.linux-armv7l/wheel/humann/data/pathways 2023-03-02T18:00:39,606 copying build/lib/humann/data/pathways/unipathway_uniprots.uniref.bz2 -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2023-03-02T18:00:39,665 copying build/lib/humann/data/pathways/metacyc_pathways_structured_filtered -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2023-03-02T18:00:39,677 copying build/lib/humann/data/pathways/metacyc_pathways_structured_v24 -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2023-03-02T18:00:39,701 copying build/lib/humann/data/pathways/metacyc_pathways_structured_filtered_v24 -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2023-03-02T18:00:39,714 copying build/lib/humann/data/pathways/metacyc_pathways_structured -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2023-03-02T18:00:39,733 copying build/lib/humann/data/pathways/metacyc_pathways -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2023-03-02T18:00:39,752 copying build/lib/humann/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2 -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2023-03-02T18:00:41,840 copying build/lib/humann/data/pathways/metacyc_pathways_to_organisms -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2023-03-02T18:00:41,857 copying build/lib/humann/data/pathways/unipathway_pathways -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2023-03-02T18:00:41,914 copying build/lib/humann/__init__.py -> build/bdist.linux-armv7l/wheel/humann 2023-03-02T18:00:41,917 running install_egg_info 2023-03-02T18:00:42,055 running egg_info 2023-03-02T18:00:42,113 writing humann.egg-info/PKG-INFO 2023-03-02T18:00:42,117 writing dependency_links to humann.egg-info/dependency_links.txt 2023-03-02T18:00:42,123 writing entry points to humann.egg-info/entry_points.txt 2023-03-02T18:00:42,127 writing top-level names to humann.egg-info/top_level.txt 2023-03-02T18:00:42,319 reading manifest file 'humann.egg-info/SOURCES.txt' 2023-03-02T18:00:42,338 reading manifest template 'MANIFEST.in' 2023-03-02T18:00:42,341 warning: no files found matching 'humann/tools/README.txt' 2023-03-02T18:00:42,342 warning: no files found matching 'humann/maintenance/README.md' 2023-03-02T18:00:42,342 warning: no files found matching 'humann/maintenance/metacyc_swissprot_trembl_reference_databases.md' 2023-03-02T18:00:42,347 warning: no previously-included files found matching 'humann/data/misc/map_eggnog_name.txt.gz' 2023-03-02T18:00:42,351 warning: no previously-included files found matching 'humann/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' 2023-03-02T18:00:42,353 warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref50.txt.gz' 2023-03-02T18:00:42,356 warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref90.txt.gz' 2023-03-02T18:00:42,359 warning: no previously-included files found matching 'humann/data/misc/map_uniref90_name.txt.bz2' 2023-03-02T18:00:42,362 warning: no previously-included files found matching 'humann/data/misc/map_go_uniref50.txt.gz' 2023-03-02T18:00:42,364 warning: no previously-included files found matching 'humann/data/misc/map_go_uniref90.txt.gz' 2023-03-02T18:00:42,367 warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref50.txt.gz' 2023-03-02T18:00:42,369 warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref90.txt.gz' 2023-03-02T18:00:42,372 warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref50.txt.gz' 2023-03-02T18:00:42,375 warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref90.txt.gz' 2023-03-02T18:00:42,377 warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref50.txt.gz' 2023-03-02T18:00:42,380 warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref90.txt.gz' 2023-03-02T18:00:42,383 warning: no previously-included files found matching 'humann/data/misc/uniref50-tol-lca.dat.gz' 2023-03-02T18:00:42,385 warning: no previously-included files found matching 'humann/data/misc/uniref90-tol-lca.dat.gz' 2023-03-02T18:00:42,388 warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref50.txt.gz' 2023-03-02T18:00:42,391 warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref90.txt.gz' 2023-03-02T18:00:42,391 adding license file 'LICENSE' 2023-03-02T18:00:42,423 writing manifest file 'humann.egg-info/SOURCES.txt' 2023-03-02T18:00:42,427 Copying humann.egg-info to build/bdist.linux-armv7l/wheel/humann-3.6.1-py3.7.egg-info 2023-03-02T18:00:42,454 running install_scripts 2023-03-02T18:00:42,508 Installing latest glpk. 2023-03-02T18:00:42,508 Downloading http://ftp.gnu.org/gnu/glpk/glpk-4.55.tar.gz 2023-03-02T18:00:42,749 Downloading file of size: 3.27 MB 2023-03-02T18:00:42,819 0.01 MB 0.24 % 19.13 MB/sec 0 min 0 sec 2023-03-02T18:00:42,819 0.02 MB 0.48 % 0.22 MB/sec 0 min 15 sec 2023-03-02T18:00:42,820 0.02 MB 0.72 % 0.33 MB/sec 0 min 10 sec 2023-03-02T18:00:42,820 0.03 MB 0.96 % 0.44 MB/sec 0 min 7 sec 2023-03-02T18:00:42,891 0.04 MB 1.20 % 0.55 MB/sec 0 min 6 sec 2023-03-02T18:00:42,892 0.05 MB 1.44 % 0.33 MB/sec 0 min 10 sec 2023-03-02T18:00:42,892 0.05 MB 1.67 % 0.38 MB/sec 0 min 8 sec 2023-03-02T18:00:42,892 0.06 MB 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2023-03-02T18:00:43,117 0.55 MB 16.99 % 1.51 MB/sec 0 min 2 sec 2023-03-02T18:00:43,117 0.56 MB 17.22 % 1.53 MB/sec 0 min 2 sec 2023-03-02T18:00:43,117 0.57 MB 17.46 % 1.55 MB/sec 0 min 2 sec 2023-03-02T18:00:43,118 0.58 MB 17.70 % 1.57 MB/sec 0 min 2 sec 2023-03-02T18:00:43,118 0.59 MB 17.94 % 1.59 MB/sec 0 min 2 sec 2023-03-02T18:00:43,118 0.59 MB 18.18 % 1.61 MB/sec 0 min 2 sec 2023-03-02T18:00:43,119 0.60 MB 18.42 % 1.63 MB/sec 0 min 2 sec 2023-03-02T18:00:43,119 0.61 MB 18.66 % 1.65 MB/sec 0 min 2 sec 2023-03-02T18:00:43,119 0.62 MB 18.90 % 1.67 MB/sec 0 min 2 sec 2023-03-02T18:00:43,120 0.62 MB 19.14 % 1.69 MB/sec 0 min 2 sec 2023-03-02T18:00:43,120 0.63 MB 19.38 % 1.71 MB/sec 0 min 2 sec 2023-03-02T18:00:43,121 0.64 MB 19.62 % 1.73 MB/sec 0 min 2 sec 2023-03-02T18:00:43,121 0.65 MB 19.86 % 1.75 MB/sec 0 min 1 sec 2023-03-02T18:00:43,121 0.66 MB 20.10 % 1.77 MB/sec 0 min 1 sec 2023-03-02T18:00:43,122 0.66 MB 20.33 % 1.79 MB/sec 0 min 1 sec 2023-03-02T18:00:43,122 0.67 MB 20.57 % 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2023-03-02T18:00:43,179 0.80 MB 24.40 % 2.12 MB/sec 0 min 1 sec 2023-03-02T18:00:43,179 0.80 MB 24.64 % 1.87 MB/sec 0 min 1 sec 2023-03-02T18:00:43,180 0.81 MB 24.88 % 1.89 MB/sec 0 min 1 sec 2023-03-02T18:00:43,180 0.82 MB 25.12 % 1.90 MB/sec 0 min 1 sec 2023-03-02T18:00:43,181 0.83 MB 25.36 % 1.92 MB/sec 0 min 1 sec 2023-03-02T18:00:43,181 0.84 MB 25.60 % 1.94 MB/sec 0 min 1 sec 2023-03-02T18:00:43,181 0.84 MB 25.84 % 1.95 MB/sec 0 min 1 sec 2023-03-02T18:00:43,182 0.85 MB 26.08 % 1.97 MB/sec 0 min 1 sec 2023-03-02T18:00:43,182 0.86 MB 26.32 % 1.98 MB/sec 0 min 1 sec 2023-03-02T18:00:43,183 0.87 MB 26.55 % 2.00 MB/sec 0 min 1 sec 2023-03-02T18:00:43,183 0.88 MB 26.79 % 2.02 MB/sec 0 min 1 sec 2023-03-02T18:00:43,183 0.88 MB 27.03 % 2.03 MB/sec 0 min 1 sec 2023-03-02T18:00:43,184 0.89 MB 27.27 % 2.05 MB/sec 0 min 1 sec 2023-03-02T18:00:43,184 0.90 MB 27.51 % 2.07 MB/sec 0 min 1 sec 2023-03-02T18:00:43,185 0.91 MB 27.75 % 2.08 MB/sec 0 min 1 sec 2023-03-02T18:00:43,185 0.91 MB 27.99 % 2.10 MB/sec 0 min 1 sec 2023-03-02T18:00:43,185 0.92 MB 28.23 % 2.12 MB/sec 0 min 1 sec 2023-03-02T18:00:43,186 0.93 MB 28.47 % 2.13 MB/sec 0 min 1 sec 2023-03-02T18:00:43,186 0.94 MB 28.71 % 2.15 MB/sec 0 min 1 sec 2023-03-02T18:00:43,186 0.95 MB 28.95 % 2.16 MB/sec 0 min 1 sec 2023-03-02T18:00:43,187 0.95 MB 29.19 % 2.18 MB/sec 0 min 1 sec 2023-03-02T18:00:43,187 0.96 MB 29.43 % 2.20 MB/sec 0 min 1 sec 2023-03-02T18:00:43,187 0.97 MB 29.66 % 2.21 MB/sec 0 min 1 sec 2023-03-02T18:00:43,188 0.98 MB 29.90 % 2.23 MB/sec 0 min 1 sec 2023-03-02T18:00:43,188 0.98 MB 30.14 % 2.25 MB/sec 0 min 1 sec 2023-03-02T18:00:43,188 0.99 MB 30.38 % 2.26 MB/sec 0 min 1 sec 2023-03-02T18:00:43,189 1.00 MB 30.62 % 2.28 MB/sec 0 min 1 sec 2023-03-02T18:00:43,189 1.01 MB 30.86 % 2.29 MB/sec 0 min 1 sec 2023-03-02T18:00:43,189 1.02 MB 31.10 % 2.31 MB/sec 0 min 1 sec 2023-03-02T18:00:43,190 1.02 MB 31.34 % 2.33 MB/sec 0 min 1 sec 2023-03-02T18:00:43,190 1.03 MB 31.58 % 2.34 MB/sec 0 min 1 sec 2023-03-02T18:00:43,190 1.04 MB 31.82 % 2.36 MB/sec 0 min 1 sec 2023-03-02T18:00:43,191 1.05 MB 32.06 % 2.38 MB/sec 0 min 1 sec 2023-03-02T18:00:43,191 1.05 MB 32.30 % 2.39 MB/sec 0 min 1 sec 2023-03-02T18:00:43,191 1.06 MB 32.54 % 2.41 MB/sec 0 min 1 sec 2023-03-02T18:00:43,192 1.07 MB 32.77 % 2.42 MB/sec 0 min 1 sec 2023-03-02T18:00:43,192 1.08 MB 33.01 % 2.44 MB/sec 0 min 1 sec 2023-03-02T18:00:43,192 1.09 MB 33.25 % 2.46 MB/sec 0 min 1 sec 2023-03-02T18:00:43,193 1.09 MB 33.49 % 2.47 MB/sec 0 min 1 sec 2023-03-02T18:00:43,193 1.10 MB 33.73 % 2.49 MB/sec 0 min 1 sec 2023-03-02T18:00:43,193 1.11 MB 33.97 % 2.50 MB/sec 0 min 1 sec 2023-03-02T18:00:43,194 1.12 MB 34.21 % 2.52 MB/sec 0 min 1 sec 2023-03-02T18:00:43,194 1.12 MB 34.45 % 2.53 MB/sec 0 min 1 sec 2023-03-02T18:00:43,195 1.13 MB 34.69 % 2.55 MB/sec 0 min 1 sec 2023-03-02T18:00:43,195 1.14 MB 34.93 % 2.57 MB/sec 0 min 1 sec 2023-03-02T18:00:43,195 1.15 MB 35.17 % 2.58 MB/sec 0 min 1 sec 2023-03-02T18:00:43,196 1.16 MB 35.41 % 2.60 MB/sec 0 min 1 sec 2023-03-02T18:00:43,196 1.16 MB 35.65 % 2.61 MB/sec 0 min 1 sec 2023-03-02T18:00:43,196 1.17 MB 35.88 % 2.63 MB/sec 0 min 1 sec 2023-03-02T18:00:43,196 1.18 MB 36.12 % 2.64 MB/sec 0 min 1 sec 2023-03-02T18:00:43,197 1.19 MB 36.36 % 2.66 MB/sec 0 min 1 sec 2023-03-02T18:00:43,197 1.20 MB 36.60 % 2.68 MB/sec 0 min 1 sec 2023-03-02T18:00:43,197 1.20 MB 36.84 % 2.69 MB/sec 0 min 1 sec 2023-03-02T18:00:43,198 1.21 MB 37.08 % 2.71 MB/sec 0 min 1 sec 2023-03-02T18:00:43,198 1.22 MB 37.32 % 2.72 MB/sec 0 min 1 sec 2023-03-02T18:00:43,198 1.23 MB 37.56 % 2.74 MB/sec 0 min 1 sec 2023-03-02T18:00:43,199 1.23 MB 37.80 % 2.75 MB/sec 0 min 1 sec 2023-03-02T18:00:43,199 1.24 MB 38.04 % 2.77 MB/sec 0 min 1 sec 2023-03-02T18:00:43,199 1.25 MB 38.28 % 2.79 MB/sec 0 min 1 sec 2023-03-02T18:00:43,200 1.26 MB 38.52 % 2.80 MB/sec 0 min 1 sec 2023-03-02T18:00:43,200 1.27 MB 38.75 % 2.82 MB/sec 0 min 1 sec 2023-03-02T18:00:43,200 1.27 MB 38.99 % 2.83 MB/sec 0 min 1 sec 2023-03-02T18:00:43,201 1.28 MB 39.23 % 2.85 MB/sec 0 min 1 sec 2023-03-02T18:00:43,201 1.29 MB 39.47 % 2.86 MB/sec 0 min 1 sec 2023-03-02T18:00:43,201 1.30 MB 39.71 % 2.88 MB/sec 0 min 1 sec 2023-03-02T18:00:43,202 1.30 MB 39.95 % 2.90 MB/sec 0 min 1 sec 2023-03-02T18:00:43,202 1.31 MB 40.19 % 2.91 MB/sec 0 min 1 sec 2023-03-02T18:00:43,202 1.32 MB 40.43 % 2.93 MB/sec 0 min 1 sec 2023-03-02T18:00:43,202 1.33 MB 40.67 % 2.94 MB/sec 0 min 1 sec 2023-03-02T18:00:43,203 1.34 MB 40.91 % 2.96 MB/sec 0 min 1 sec 2023-03-02T18:00:43,203 1.34 MB 41.15 % 2.97 MB/sec 0 min 1 sec 2023-03-02T18:00:43,203 1.35 MB 41.39 % 2.99 MB/sec 0 min 1 sec 2023-03-02T18:00:43,204 1.36 MB 41.63 % 3.00 MB/sec 0 min 1 sec 2023-03-02T18:00:43,204 1.37 MB 41.86 % 3.02 MB/sec 0 min 1 sec 2023-03-02T18:00:43,204 1.38 MB 42.10 % 3.03 MB/sec 0 min 1 sec 2023-03-02T18:00:43,205 1.38 MB 42.34 % 3.05 MB/sec 0 min 1 sec 2023-03-02T18:00:43,205 1.39 MB 42.58 % 3.07 MB/sec 0 min 1 sec 2023-03-02T18:00:43,205 1.40 MB 42.82 % 3.08 MB/sec 0 min 1 sec 2023-03-02T18:00:43,206 1.41 MB 43.06 % 3.10 MB/sec 0 min 1 sec 2023-03-02T18:00:43,206 1.41 MB 43.30 % 3.11 MB/sec 0 min 1 sec 2023-03-02T18:00:43,206 1.42 MB 43.54 % 3.13 MB/sec 0 min 1 sec 2023-03-02T18:00:43,207 1.43 MB 43.78 % 3.14 MB/sec 0 min 1 sec 2023-03-02T18:00:43,207 1.44 MB 44.02 % 3.16 MB/sec 0 min 1 sec 2023-03-02T18:00:43,207 1.45 MB 44.26 % 3.17 MB/sec 0 min 1 sec 2023-03-02T18:00:43,207 1.45 MB 44.50 % 3.19 MB/sec 0 min 1 sec 2023-03-02T18:00:43,208 1.46 MB 44.74 % 3.20 MB/sec 0 min 1 sec 2023-03-02T18:00:43,208 1.47 MB 44.97 % 3.22 MB/sec 0 min 1 sec 2023-03-02T18:00:43,208 1.48 MB 45.21 % 3.23 MB/sec 0 min 1 sec 2023-03-02T18:00:43,209 1.48 MB 45.45 % 3.25 MB/sec 0 min 1 sec 2023-03-02T18:00:43,209 1.49 MB 45.69 % 3.26 MB/sec 0 min 1 sec 2023-03-02T18:00:43,209 1.50 MB 45.93 % 3.28 MB/sec 0 min 1 sec 2023-03-02T18:00:43,210 1.51 MB 46.17 % 3.29 MB/sec 0 min 1 sec 2023-03-02T18:00:43,210 1.52 MB 46.41 % 3.31 MB/sec 0 min 1 sec 2023-03-02T18:00:43,210 1.52 MB 46.65 % 3.32 MB/sec 0 min 1 sec 2023-03-02T18:00:43,211 1.53 MB 46.89 % 3.34 MB/sec 0 min 1 sec 2023-03-02T18:00:43,211 1.54 MB 47.13 % 3.35 MB/sec 0 min 1 sec 2023-03-02T18:00:43,211 1.55 MB 47.37 % 3.37 MB/sec 0 min 1 sec 2023-03-02T18:00:43,211 1.55 MB 47.61 % 3.38 MB/sec 0 min 1 sec 2023-03-02T18:00:43,212 1.56 MB 47.85 % 3.40 MB/sec 0 min 1 sec 2023-03-02T18:00:43,212 1.57 MB 48.08 % 3.41 MB/sec 0 min 0 sec 2023-03-02T18:00:43,212 1.58 MB 48.32 % 3.43 MB/sec 0 min 0 sec 2023-03-02T18:00:43,213 1.59 MB 48.56 % 3.44 MB/sec 0 min 0 sec 2023-03-02T18:00:43,213 1.59 MB 48.80 % 3.46 MB/sec 0 min 0 sec 2023-03-02T18:00:43,213 1.60 MB 49.04 % 3.47 MB/sec 0 min 0 sec 2023-03-02T18:00:43,213 1.61 MB 49.28 % 3.49 MB/sec 0 min 0 sec 2023-03-02T18:00:43,251 1.62 MB 49.52 % 3.50 MB/sec 0 min 0 sec 2023-03-02T18:00:43,252 1.62 MB 49.76 % 3.23 MB/sec 0 min 1 sec 2023-03-02T18:00:43,252 1.63 MB 50.00 % 3.24 MB/sec 0 min 1 sec 2023-03-02T18:00:43,253 1.64 MB 50.24 % 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2023-03-02T18:00:43,259 1.77 MB 54.07 % 3.47 MB/sec 0 min 0 sec 2023-03-02T18:00:43,259 1.77 MB 54.30 % 3.48 MB/sec 0 min 0 sec 2023-03-02T18:00:43,259 1.78 MB 54.54 % 3.50 MB/sec 0 min 0 sec 2023-03-02T18:00:43,260 1.79 MB 54.78 % 3.51 MB/sec 0 min 0 sec 2023-03-02T18:00:43,260 1.80 MB 55.02 % 3.52 MB/sec 0 min 0 sec 2023-03-02T18:00:43,260 1.80 MB 55.26 % 3.53 MB/sec 0 min 0 sec 2023-03-02T18:00:43,261 1.81 MB 55.50 % 3.55 MB/sec 0 min 0 sec 2023-03-02T18:00:43,261 1.82 MB 55.74 % 3.56 MB/sec 0 min 0 sec 2023-03-02T18:00:43,262 1.83 MB 55.98 % 3.57 MB/sec 0 min 0 sec 2023-03-02T18:00:43,262 1.84 MB 56.22 % 3.59 MB/sec 0 min 0 sec 2023-03-02T18:00:43,262 1.84 MB 56.46 % 3.60 MB/sec 0 min 0 sec 2023-03-02T18:00:43,263 1.85 MB 56.70 % 3.61 MB/sec 0 min 0 sec 2023-03-02T18:00:43,263 1.86 MB 56.94 % 3.62 MB/sec 0 min 0 sec 2023-03-02T18:00:43,263 1.87 MB 57.18 % 3.64 MB/sec 0 min 0 sec 2023-03-02T18:00:43,264 1.88 MB 57.41 % 3.65 MB/sec 0 min 0 sec 2023-03-02T18:00:43,264 1.88 MB 57.65 % 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2023-03-02T18:00:43,270 2.01 MB 61.48 % 3.87 MB/sec 0 min 0 sec 2023-03-02T18:00:43,270 2.02 MB 61.72 % 3.88 MB/sec 0 min 0 sec 2023-03-02T18:00:43,270 2.02 MB 61.96 % 3.89 MB/sec 0 min 0 sec 2023-03-02T18:00:43,271 2.03 MB 62.20 % 3.90 MB/sec 0 min 0 sec 2023-03-02T18:00:43,271 2.04 MB 62.44 % 3.92 MB/sec 0 min 0 sec 2023-03-02T18:00:43,271 2.05 MB 62.68 % 3.93 MB/sec 0 min 0 sec 2023-03-02T18:00:43,272 2.05 MB 62.92 % 3.94 MB/sec 0 min 0 sec 2023-03-02T18:00:43,272 2.06 MB 63.16 % 3.95 MB/sec 0 min 0 sec 2023-03-02T18:00:43,272 2.07 MB 63.40 % 3.97 MB/sec 0 min 0 sec 2023-03-02T18:00:43,273 2.08 MB 63.63 % 3.98 MB/sec 0 min 0 sec 2023-03-02T18:00:43,273 2.09 MB 63.87 % 3.99 MB/sec 0 min 0 sec 2023-03-02T18:00:43,273 2.09 MB 64.11 % 4.00 MB/sec 0 min 0 sec 2023-03-02T18:00:43,274 2.10 MB 64.35 % 4.01 MB/sec 0 min 0 sec 2023-03-02T18:00:43,274 2.11 MB 64.59 % 4.03 MB/sec 0 min 0 sec 2023-03-02T18:00:43,274 2.12 MB 64.83 % 4.04 MB/sec 0 min 0 sec 2023-03-02T18:00:43,275 2.12 MB 65.07 % 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2023-03-02T18:00:43,318 3.22 MB 98.56 % 5.71 MB/sec 0 min 0 sec 2023-03-02T18:00:43,318 3.23 MB 98.80 % 5.72 MB/sec 0 min 0 sec 2023-03-02T18:00:43,318 3.23 MB 99.04 % 5.74 MB/sec 0 min 0 sec 2023-03-02T18:00:43,319 3.24 MB 99.28 % 5.75 MB/sec 0 min 0 sec 2023-03-02T18:00:43,323 3.25 MB 99.52 % 5.76 MB/sec 0 min 0 sec 2023-03-02T18:00:43,324 3.26 MB 99.76 % 5.67 MB/sec 0 min 0 sec 2023-03-02T18:00:43,324 3.27 MB 100.00 % 5.68 MB/sec 0 min 0 sec 2023-03-02T18:00:43,434 3.27 MB 100.24 % 5.69 MB/sec 0 min -0 sec 2023-03-02T18:00:47,290 checking for a BSD-compatible install... /usr/bin/install -c 2023-03-02T18:00:47,327 checking whether build environment is sane... yes 2023-03-02T18:00:47,415 checking for a thread-safe mkdir -p... /usr/bin/mkdir -p 2023-03-02T18:00:47,423 checking for gawk... gawk 2023-03-02T18:00:47,496 checking whether make sets $(MAKE)... yes 2023-03-02T18:00:47,578 checking for gcc... gcc 2023-03-02T18:00:48,175 checking whether the C compiler works... yes 2023-03-02T18:00:48,178 checking for C compiler default output file name... a.out 2023-03-02T18:00:48,528 checking for suffix of executables... 2023-03-02T18:00:48,945 checking whether we are cross compiling... no 2023-03-02T18:00:49,158 checking for suffix of object files... o 2023-03-02T18:00:49,342 checking whether we are using the GNU C compiler... yes 2023-03-02T18:00:49,532 checking whether gcc accepts -g... yes 2023-03-02T18:00:49,817 checking for gcc option to accept ISO C89... none needed 2023-03-02T18:00:49,865 checking for style of include used by make... GNU 2023-03-02T18:00:50,246 checking dependency style of gcc... gcc3 2023-03-02T18:00:50,829 checking build system type... armv7l-unknown-linux-gnueabihf 2023-03-02T18:00:50,833 checking host system type... armv7l-unknown-linux-gnueabihf 2023-03-02T18:00:51,117 checking how to print strings... printf 2023-03-02T18:00:51,163 checking for a sed that does not truncate output... /usr/bin/sed 2023-03-02T18:00:51,196 checking for grep that handles long lines and -e... /usr/bin/grep 2023-03-02T18:00:51,214 checking for egrep... /usr/bin/grep -E 2023-03-02T18:00:51,231 checking for fgrep... /usr/bin/grep -F 2023-03-02T18:00:51,274 checking for ld used by gcc... /usr/bin/ld 2023-03-02T18:00:51,296 checking if the linker (/usr/bin/ld) is GNU ld... yes 2023-03-02T18:00:51,333 checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B 2023-03-02T18:00:51,606 checking the name lister (/usr/bin/nm -B) interface... BSD nm 2023-03-02T18:00:51,610 checking whether ln -s works... yes 2023-03-02T18:00:51,698 checking the maximum length of command line arguments... 1572864 2023-03-02T18:00:51,708 checking whether the shell understands some XSI constructs... yes 2023-03-02T18:00:51,717 checking whether the shell understands "+="... yes 2023-03-02T18:00:51,769 checking how to convert armv7l-unknown-linux-gnueabihf file names to armv7l-unknown-linux-gnueabihf format... func_convert_file_noop 2023-03-02T18:00:51,774 checking how to convert armv7l-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop 2023-03-02T18:00:51,778 checking for /usr/bin/ld option to reload object files... -r 2023-03-02T18:00:51,788 checking for objdump... objdump 2023-03-02T18:00:51,796 checking how to recognize dependent libraries... pass_all 2023-03-02T18:00:51,804 checking for dlltool... no 2023-03-02T18:00:51,808 checking how to associate runtime and link libraries... printf %s\n 2023-03-02T18:00:51,817 checking for ar... ar 2023-03-02T18:00:52,084 checking for archiver @FILE support... @ 2023-03-02T18:00:52,092 checking for strip... strip 2023-03-02T18:00:52,103 checking for ranlib... ranlib 2023-03-02T18:00:52,826 checking command to parse /usr/bin/nm -B output from gcc object... ok 2023-03-02T18:00:52,844 checking for sysroot... no 2023-03-02T18:00:52,855 checking for mt... no 2023-03-02T18:00:52,892 checking if : is a manifest tool... no 2023-03-02T18:00:53,142 checking how to run the C preprocessor... gcc -E 2023-03-02T18:00:54,386 checking for ANSI C header files... yes 2023-03-02T18:00:54,679 checking for sys/types.h... yes 2023-03-02T18:00:55,013 checking for sys/stat.h... yes 2023-03-02T18:00:55,350 checking for stdlib.h... yes 2023-03-02T18:00:55,702 checking for string.h... yes 2023-03-02T18:00:56,057 checking for memory.h... yes 2023-03-02T18:00:56,407 checking for strings.h... yes 2023-03-02T18:00:56,767 checking for inttypes.h... yes 2023-03-02T18:00:57,125 checking for stdint.h... yes 2023-03-02T18:00:57,508 checking for unistd.h... yes 2023-03-02T18:00:57,864 checking for dlfcn.h... yes 2023-03-02T18:00:57,914 checking for objdir... .libs 2023-03-02T18:00:58,808 checking if gcc supports -fno-rtti -fno-exceptions... no 2023-03-02T18:00:58,812 checking for gcc option to produce PIC... -fPIC -DPIC 2023-03-02T18:00:59,031 checking if gcc PIC flag -fPIC -DPIC works... yes 2023-03-02T18:00:59,825 checking if gcc static flag -static works... yes 2023-03-02T18:01:00,118 checking if gcc supports -c -o file.o... yes 2023-03-02T18:01:00,121 checking if gcc supports -c -o file.o... (cached) yes 2023-03-02T18:01:00,205 checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes 2023-03-02T18:01:00,566 checking whether -lc should be explicitly linked in... no 2023-03-02T18:01:01,188 checking dynamic linker characteristics... GNU/Linux ld.so 2023-03-02T18:01:01,191 checking how to hardcode library paths into programs... immediate 2023-03-02T18:01:01,208 checking whether stripping libraries is possible... yes 2023-03-02T18:01:01,211 checking if libtool supports shared libraries... yes 2023-03-02T18:01:01,214 checking whether to build shared libraries... yes 2023-03-02T18:01:01,217 checking whether to build static libraries... yes 2023-03-02T18:01:01,676 checking for exp in -lm... yes 2023-03-02T18:01:02,006 checking sys/time.h usability... yes 2023-03-02T18:01:02,106 checking sys/time.h presence... yes 2023-03-02T18:01:02,109 checking for sys/time.h... yes 2023-03-02T18:01:02,555 checking for gettimeofday... yes 2023-03-02T18:01:02,560 checking whether to use GNU MP bignum library... no 2023-03-02T18:01:02,564 checking whether to enable shared library support... no 2023-03-02T18:01:02,568 checking whether to enable MathProg ODBC support... no 2023-03-02T18:01:02,571 checking whether to enable MathProg MySQL support... no 2023-03-02T18:01:02,773 checking that generated files are newer than configure... done 2023-03-02T18:01:02,776 configure: creating ./config.status 2023-03-02T18:01:07,435 config.status: creating src/Makefile 2023-03-02T18:01:07,632 config.status: creating examples/Makefile 2023-03-02T18:01:07,789 config.status: creating Makefile 2023-03-02T18:01:07,909 config.status: creating config.h 2023-03-02T18:01:08,004 config.status: executing depfiles commands 2023-03-02T18:01:10,509 config.status: executing libtool commands 2023-03-02T18:01:11,929 make all-recursive 2023-03-02T18:01:11,962 make[1]: Entering directory '/tmp/pip-wheel-38m6o_nd/humann_144365f949214baa8a2e468556df9cf7/glpk_download_34jt6yuy/glpk-4.55' 2023-03-02T18:01:12,001 Making all in src 2023-03-02T18:01:12,125 make[2]: Entering directory '/tmp/pip-wheel-38m6o_nd/humann_144365f949214baa8a2e468556df9cf7/glpk_download_34jt6yuy/glpk-4.55/src' 2023-03-02T18:01:12,125 make[2]: Warning: File '.deps/libglpk_la-zutil.Plo' has modification time 0.2 s in the future 2023-03-02T18:01:12,170 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-avl.lo -MD -MP -MF .deps/libglpk_la-avl.Tpo -c -o libglpk_la-avl.lo `test -f 'avl.c' || echo './'`avl.c 2023-03-02T18:01:12,345 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-avl.lo -MD -MP -MF .deps/libglpk_la-avl.Tpo -c avl.c -fPIC -DPIC -o .libs/libglpk_la-avl.o 2023-03-02T18:01:13,411 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-avl.lo -MD -MP -MF .deps/libglpk_la-avl.Tpo -c avl.c -o libglpk_la-avl.o >/dev/null 2>&1 2023-03-02T18:01:14,394 mv -f .deps/libglpk_la-avl.Tpo .deps/libglpk_la-avl.Plo 2023-03-02T18:01:14,430 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-bfd.lo -MD -MP -MF .deps/libglpk_la-bfd.Tpo -c -o libglpk_la-bfd.lo `test -f 'bfd.c' || echo './'`bfd.c 2023-03-02T18:01:14,597 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-bfd.lo -MD -MP -MF .deps/libglpk_la-bfd.Tpo -c bfd.c -fPIC -DPIC -o .libs/libglpk_la-bfd.o 2023-03-02T18:01:15,459 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-bfd.lo -MD -MP -MF .deps/libglpk_la-bfd.Tpo -c bfd.c -o libglpk_la-bfd.o >/dev/null 2>&1 2023-03-02T18:01:16,336 mv -f .deps/libglpk_la-bfd.Tpo .deps/libglpk_la-bfd.Plo 2023-03-02T18:01:16,371 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libglpk_la-glpspx02.lo -MD -MP -MF .deps/libglpk_la-glpspx02.Tpo -c glpspx02.c -o libglpk_la-glpspx02.o >/dev/null 2>&1 2023-03-02T18:05:58,059 mv -f .deps/libglpk_la-glpspx02.Tpo .deps/libglpk_la-glpspx02.Plo 2023-03-02T18:05:58,093 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpsql.lo -MD -MP -MF .deps/libglpk_la-glpsql.Tpo -c -o libglpk_la-glpsql.lo `test -f 'glpsql.c' || echo './'`glpsql.c 2023-03-02T18:05:58,248 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpsql.lo -MD -MP -MF .deps/libglpk_la-glpsql.Tpo -c glpsql.c -fPIC -DPIC -o .libs/libglpk_la-glpsql.o 2023-03-02T18:05:58,744 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT 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-I./proxy -I./zlib -g -O2 -MT libglpk_la-glptsp.lo -MD -MP -MF .deps/libglpk_la-glptsp.Tpo -c glptsp.c -o libglpk_la-glptsp.o >/dev/null 2>&1 2023-03-02T18:06:10,406 mv -f .deps/libglpk_la-glptsp.Tpo .deps/libglpk_la-glptsp.Plo 2023-03-02T18:06:10,439 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-lux.lo -MD -MP -MF .deps/libglpk_la-lux.Tpo -c -o libglpk_la-lux.lo `test -f 'lux.c' || echo './'`lux.c 2023-03-02T18:06:10,596 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-lux.lo -MD -MP -MF .deps/libglpk_la-lux.Tpo -c lux.c -fPIC -DPIC -o .libs/libglpk_la-lux.o 2023-03-02T18:06:13,097 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT 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-I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_post_tree.lo -MD -MP -MF .deps/libglpk_la-amd_post_tree.Tpo -c amd/amd_post_tree.c -fPIC -DPIC -o .libs/libglpk_la-amd_post_tree.o 2023-03-02T18:06:29,804 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_post_tree.lo -MD -MP -MF .deps/libglpk_la-amd_post_tree.Tpo -c amd/amd_post_tree.c -o libglpk_la-amd_post_tree.o >/dev/null 2>&1 2023-03-02T18:06:30,281 mv -f .deps/libglpk_la-amd_post_tree.Tpo .deps/libglpk_la-amd_post_tree.Plo 2023-03-02T18:06:30,316 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_postorder.lo -MD -MP -MF .deps/libglpk_la-amd_postorder.Tpo -c -o libglpk_la-amd_postorder.lo `test -f 'amd/amd_postorder.c' || echo './'`amd/amd_postorder.c 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-I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_valid.lo -MD -MP -MF .deps/libglpk_la-amd_valid.Tpo -c -o libglpk_la-amd_valid.lo `test -f 'amd/amd_valid.c' || echo './'`amd/amd_valid.c 2023-03-02T18:06:33,068 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_valid.lo -MD -MP -MF .deps/libglpk_la-amd_valid.Tpo -c amd/amd_valid.c -fPIC -DPIC -o .libs/libglpk_la-amd_valid.o 2023-03-02T18:06:33,535 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_valid.lo -MD -MP -MF .deps/libglpk_la-amd_valid.Tpo -c amd/amd_valid.c -o libglpk_la-amd_valid.o >/dev/null 2>&1 2023-03-02T18:06:34,042 mv -f .deps/libglpk_la-amd_valid.Tpo .deps/libglpk_la-amd_valid.Plo 2023-03-02T18:06:34,078 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-btf.lo -MD -MP -MF .deps/libglpk_la-btf.Tpo -c -o libglpk_la-btf.lo `test -f 'bflib/btf.c' || echo './'`bflib/btf.c 2023-03-02T18:06:34,238 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-btf.lo -MD -MP -MF .deps/libglpk_la-btf.Tpo -c bflib/btf.c -fPIC -DPIC -o .libs/libglpk_la-btf.o 2023-03-02T18:06:36,043 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-btf.lo -MD -MP -MF .deps/libglpk_la-btf.Tpo -c bflib/btf.c -o libglpk_la-btf.o >/dev/null 2>&1 2023-03-02T18:06:37,861 mv -f .deps/libglpk_la-btf.Tpo .deps/libglpk_la-btf.Plo 2023-03-02T18:06:37,893 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-btfint.lo -MD -MP -MF .deps/libglpk_la-btfint.Tpo -c -o libglpk_la-btfint.lo `test -f 'bflib/btfint.c' || echo './'`bflib/btfint.c 2023-03-02T18:06:38,048 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-btfint.lo -MD -MP -MF .deps/libglpk_la-btfint.Tpo -c bflib/btfint.c -fPIC -DPIC -o .libs/libglpk_la-btfint.o 2023-03-02T18:06:39,146 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-btfint.lo -MD -MP -MF .deps/libglpk_la-btfint.Tpo -c bflib/btfint.c -o libglpk_la-btfint.o >/dev/null 2>&1 2023-03-02T18:06:40,279 mv -f .deps/libglpk_la-btfint.Tpo .deps/libglpk_la-btfint.Plo 2023-03-02T18:06:40,314 /bin/bash ../libtool --tag=CC 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-DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-fhvint.lo -MD -MP -MF .deps/libglpk_la-fhvint.Tpo -c -o libglpk_la-fhvint.lo `test -f 'bflib/fhvint.c' || echo './'`bflib/fhvint.c 2023-03-02T18:06:43,764 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-fhvint.lo -MD -MP -MF .deps/libglpk_la-fhvint.Tpo -c bflib/fhvint.c -fPIC -DPIC -o .libs/libglpk_la-fhvint.o 2023-03-02T18:06:44,413 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-fhvint.lo -MD -MP -MF .deps/libglpk_la-fhvint.Tpo -c bflib/fhvint.c -o libglpk_la-fhvint.o >/dev/null 2>&1 2023-03-02T18:06:45,092 mv -f .deps/libglpk_la-fhvint.Tpo .deps/libglpk_la-fhvint.Plo 2023-03-02T18:06:45,124 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-ifu.lo -MD -MP -MF .deps/libglpk_la-ifu.Tpo -c -o libglpk_la-ifu.lo `test -f 'bflib/ifu.c' || echo './'`bflib/ifu.c 2023-03-02T18:06:45,282 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-ifu.lo -MD -MP -MF .deps/libglpk_la-ifu.Tpo -c bflib/ifu.c -fPIC -DPIC -o .libs/libglpk_la-ifu.o 2023-03-02T18:06:46,334 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-ifu.lo -MD -MP -MF .deps/libglpk_la-ifu.Tpo -c bflib/ifu.c -o libglpk_la-ifu.o >/dev/null 2>&1 2023-03-02T18:06:47,403 mv -f .deps/libglpk_la-ifu.Tpo .deps/libglpk_la-ifu.Plo 2023-03-02T18:06:47,437 /bin/bash ../libtool --tag=CC --mode=compile gcc 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libglpk_la-minisat.lo `test -f 'minisat/minisat.c' || echo './'`minisat/minisat.c 2023-03-02T18:07:32,129 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-minisat.lo -MD -MP -MF .deps/libglpk_la-minisat.Tpo -c minisat/minisat.c -fPIC -DPIC -o .libs/libglpk_la-minisat.o 2023-03-02T18:07:35,850 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-minisat.lo -MD -MP -MF .deps/libglpk_la-minisat.Tpo -c minisat/minisat.c -o libglpk_la-minisat.o >/dev/null 2>&1 2023-03-02T18:07:39,567 mv -f .deps/libglpk_la-minisat.Tpo .deps/libglpk_la-minisat.Plo 2023-03-02T18:07:39,602 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-bignum.lo -MD -MP -MF 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2023-03-02T18:07:57,511 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-relax4.lo -MD -MP -MF .deps/libglpk_la-relax4.Tpo -c misc/relax4.c -fPIC -DPIC -o .libs/libglpk_la-relax4.o 2023-03-02T18:08:06,255 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-relax4.lo -MD -MP -MF .deps/libglpk_la-relax4.Tpo -c misc/relax4.c -o libglpk_la-relax4.o >/dev/null 2>&1 2023-03-02T18:08:14,999 mv -f .deps/libglpk_la-relax4.Tpo .deps/libglpk_la-relax4.Plo 2023-03-02T18:08:15,033 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-rng.lo -MD -MP -MF .deps/libglpk_la-rng.Tpo -c -o libglpk_la-rng.lo `test -f 'misc/rng.c' || echo './'`misc/rng.c 2023-03-02T18:08:15,194 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-rng.lo -MD -MP -MF .deps/libglpk_la-rng.Tpo -c misc/rng.c -fPIC -DPIC -o .libs/libglpk_la-rng.o 2023-03-02T18:08:15,740 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-rng.lo -MD -MP -MF .deps/libglpk_la-rng.Tpo -c misc/rng.c -o libglpk_la-rng.o >/dev/null 2>&1 2023-03-02T18:08:16,313 mv -f .deps/libglpk_la-rng.Tpo .deps/libglpk_la-rng.Plo 2023-03-02T18:08:16,345 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-rng1.lo -MD -MP -MF .deps/libglpk_la-rng1.Tpo -c -o libglpk_la-rng1.lo `test -f 'misc/rng1.c' || echo './'`misc/rng1.c 2023-03-02T18:08:16,505 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-rng1.lo -MD -MP -MF .deps/libglpk_la-rng1.Tpo -c misc/rng1.c -fPIC -DPIC -o .libs/libglpk_la-rng1.o 2023-03-02T18:08:16,931 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-rng1.lo -MD -MP -MF .deps/libglpk_la-rng1.Tpo -c misc/rng1.c -o libglpk_la-rng1.o >/dev/null 2>&1 2023-03-02T18:08:17,383 mv -f .deps/libglpk_la-rng1.Tpo .deps/libglpk_la-rng1.Plo 2023-03-02T18:08:17,415 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-round2n.lo -MD -MP -MF .deps/libglpk_la-round2n.Tpo -c -o libglpk_la-round2n.lo `test -f 'misc/round2n.c' || echo './'`misc/round2n.c 2023-03-02T18:08:17,575 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-round2n.lo -MD -MP -MF .deps/libglpk_la-round2n.Tpo -c misc/round2n.c -fPIC -DPIC -o .libs/libglpk_la-round2n.o 2023-03-02T18:08:17,985 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-round2n.lo -MD -MP -MF .deps/libglpk_la-round2n.Tpo -c misc/round2n.c -o libglpk_la-round2n.o >/dev/null 2>&1 2023-03-02T18:08:18,422 mv -f .deps/libglpk_la-round2n.Tpo .deps/libglpk_la-round2n.Plo 2023-03-02T18:08:18,455 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-str2int.lo -MD -MP -MF .deps/libglpk_la-str2int.Tpo -c -o libglpk_la-str2int.lo `test -f 'misc/str2int.c' || echo './'`misc/str2int.c 2023-03-02T18:08:18,625 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-str2int.lo -MD -MP -MF .deps/libglpk_la-str2int.Tpo -c misc/str2int.c -fPIC -DPIC -o .libs/libglpk_la-str2int.o 2023-03-02T18:08:19,083 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-str2int.lo -MD -MP -MF .deps/libglpk_la-str2int.Tpo -c misc/str2int.c -o libglpk_la-str2int.o >/dev/null 2>&1 2023-03-02T18:08:19,565 mv -f .deps/libglpk_la-str2int.Tpo .deps/libglpk_la-str2int.Plo 2023-03-02T18:08:19,600 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-str2num.lo -MD -MP -MF .deps/libglpk_la-str2num.Tpo -c -o libglpk_la-str2num.lo `test -f 'misc/str2num.c' || echo './'`misc/str2num.c 2023-03-02T18:08:19,759 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-str2num.lo -MD -MP -MF .deps/libglpk_la-str2num.Tpo -c misc/str2num.c -fPIC -DPIC -o .libs/libglpk_la-str2num.o 2023-03-02T18:08:20,268 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-str2num.lo -MD -MP -MF .deps/libglpk_la-str2num.Tpo -c misc/str2num.c -o libglpk_la-str2num.o >/dev/null 2>&1 2023-03-02T18:08:20,829 mv -f .deps/libglpk_la-str2num.Tpo .deps/libglpk_la-str2num.Plo 2023-03-02T18:08:20,863 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-strspx.lo -MD -MP -MF .deps/libglpk_la-strspx.Tpo -c -o libglpk_la-strspx.lo `test -f 'misc/strspx.c' || echo './'`misc/strspx.c 2023-03-02T18:08:21,026 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-strspx.lo -MD -MP -MF .deps/libglpk_la-strspx.Tpo -c misc/strspx.c -fPIC -DPIC -o .libs/libglpk_la-strspx.o 2023-03-02T18:08:21,203 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-strspx.lo -MD -MP -MF .deps/libglpk_la-strspx.Tpo -c misc/strspx.c -o libglpk_la-strspx.o >/dev/null 2>&1 2023-03-02T18:08:21,408 mv -f .deps/libglpk_la-strspx.Tpo .deps/libglpk_la-strspx.Plo 2023-03-02T18:08:21,444 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-strtrim.lo -MD -MP -MF .deps/libglpk_la-strtrim.Tpo -c -o libglpk_la-strtrim.lo `test -f 'misc/strtrim.c' || echo './'`misc/strtrim.c 2023-03-02T18:08:21,605 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-strtrim.lo -MD -MP -MF .deps/libglpk_la-strtrim.Tpo -c misc/strtrim.c -fPIC -DPIC -o .libs/libglpk_la-strtrim.o 2023-03-02T18:08:22,008 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-strtrim.lo -MD -MP -MF .deps/libglpk_la-strtrim.Tpo -c misc/strtrim.c -o libglpk_la-strtrim.o >/dev/null 2>&1 2023-03-02T18:08:22,435 mv -f .deps/libglpk_la-strtrim.Tpo .deps/libglpk_la-strtrim.Plo 2023-03-02T18:08:22,468 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-triang.lo -MD -MP -MF .deps/libglpk_la-triang.Tpo -c -o libglpk_la-triang.lo `test -f 'misc/triang.c' || echo './'`misc/triang.c 2023-03-02T18:08:22,630 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-triang.lo -MD -MP -MF .deps/libglpk_la-triang.Tpo -c misc/triang.c -fPIC -DPIC -o .libs/libglpk_la-triang.o 2023-03-02T18:08:23,615 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-triang.lo -MD -MP -MF .deps/libglpk_la-triang.Tpo -c misc/triang.c -o libglpk_la-triang.o >/dev/null 2>&1 2023-03-02T18:08:24,621 mv -f .deps/libglpk_la-triang.Tpo .deps/libglpk_la-triang.Plo 2023-03-02T18:08:24,655 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-wclique.lo -MD -MP -MF .deps/libglpk_la-wclique.Tpo -c -o libglpk_la-wclique.lo `test -f 'misc/wclique.c' || echo './'`misc/wclique.c 2023-03-02T18:08:24,823 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-wclique.lo -MD -MP -MF .deps/libglpk_la-wclique.Tpo -c misc/wclique.c -fPIC -DPIC -o .libs/libglpk_la-wclique.o 2023-03-02T18:08:25,751 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-wclique.lo -MD -MP -MF .deps/libglpk_la-wclique.Tpo -c misc/wclique.c -o libglpk_la-wclique.o >/dev/null 2>&1 2023-03-02T18:08:26,691 mv -f .deps/libglpk_la-wclique.Tpo .deps/libglpk_la-wclique.Plo 2023-03-02T18:08:26,725 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-wclique1.lo -MD -MP -MF .deps/libglpk_la-wclique1.Tpo -c -o libglpk_la-wclique1.lo `test -f 'misc/wclique1.c' || echo './'`misc/wclique1.c 2023-03-02T18:08:26,889 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-wclique1.lo -MD -MP -MF .deps/libglpk_la-wclique1.Tpo -c misc/wclique1.c -fPIC -DPIC -o .libs/libglpk_la-wclique1.o 2023-03-02T18:08:27,452 misc/wclique1.c: In function '_glp_wclique1': 2023-03-02T18:08:27,453 misc/wclique1.c:113:7: warning: 'memset' specified size between 2147483648 and 4294967295 exceeds maximum object size 2147483647 [-Wstringop-overflow=] 2023-03-02T18:08:27,454 memset(&skip[1], 0, sizeof(char) * n); 2023-03-02T18:08:27,454 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-03-02T18:08:27,454 misc/wclique1.c:115:7: warning: 'memset' specified size between 2147483648 and 4294967295 exceeds maximum object size 2147483647 [-Wstringop-overflow=] 2023-03-02T18:08:27,455 memset(&d_flag[1], 0, sizeof(char) * n); 2023-03-02T18:08:27,455 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-03-02T18:08:27,961 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-wclique1.lo -MD -MP -MF .deps/libglpk_la-wclique1.Tpo -c misc/wclique1.c -o libglpk_la-wclique1.o >/dev/null 2>&1 2023-03-02T18:08:29,017 mv -f .deps/libglpk_la-wclique1.Tpo .deps/libglpk_la-wclique1.Plo 2023-03-02T18:08:29,053 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-proxy.lo -MD -MP -MF .deps/libglpk_la-proxy.Tpo -c -o libglpk_la-proxy.lo `test -f 'proxy/proxy.c' || echo './'`proxy/proxy.c 2023-03-02T18:08:29,213 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-proxy.lo -MD -MP -MF .deps/libglpk_la-proxy.Tpo -c proxy/proxy.c -fPIC -DPIC -o .libs/libglpk_la-proxy.o 2023-03-02T18:08:30,996 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-proxy.lo -MD -MP -MF .deps/libglpk_la-proxy.Tpo -c proxy/proxy.c -o libglpk_la-proxy.o >/dev/null 2>&1 2023-03-02T18:08:32,787 mv -f .deps/libglpk_la-proxy.Tpo .deps/libglpk_la-proxy.Plo 2023-03-02T18:08:32,822 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-proxy1.lo -MD -MP -MF .deps/libglpk_la-proxy1.Tpo -c -o libglpk_la-proxy1.lo `test -f 'proxy/proxy1.c' || echo './'`proxy/proxy1.c 2023-03-02T18:08:32,987 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-proxy1.lo -MD -MP -MF .deps/libglpk_la-proxy1.Tpo -c proxy/proxy1.c -fPIC -DPIC -o .libs/libglpk_la-proxy1.o 2023-03-02T18:08:33,480 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-proxy1.lo -MD -MP -MF .deps/libglpk_la-proxy1.Tpo -c proxy/proxy1.c -o libglpk_la-proxy1.o >/dev/null 2>&1 2023-03-02T18:08:34,007 mv -f .deps/libglpk_la-proxy1.Tpo .deps/libglpk_la-proxy1.Plo 2023-03-02T18:08:34,042 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-adler32.lo -MD -MP -MF .deps/libglpk_la-adler32.Tpo -c -o libglpk_la-adler32.lo `test -f 'zlib/adler32.c' || echo './'`zlib/adler32.c 2023-03-02T18:08:34,206 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd 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-I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-compress.lo -MD -MP -MF .deps/libglpk_la-compress.Tpo -c zlib/compress.c -fPIC -DPIC -o .libs/libglpk_la-compress.o 2023-03-02T18:08:35,809 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-compress.lo -MD -MP -MF .deps/libglpk_la-compress.Tpo -c zlib/compress.c -o libglpk_la-compress.o >/dev/null 2>&1 2023-03-02T18:08:36,054 mv -f .deps/libglpk_la-compress.Tpo .deps/libglpk_la-compress.Plo 2023-03-02T18:08:36,088 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-crc32.lo -MD -MP -MF .deps/libglpk_la-crc32.Tpo -c -o libglpk_la-crc32.lo `test -f 'zlib/crc32.c' || echo './'`zlib/crc32.c 2023-03-02T18:08:36,252 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-crc32.lo -MD -MP -MF .deps/libglpk_la-crc32.Tpo -c zlib/crc32.c -fPIC -DPIC -o .libs/libglpk_la-crc32.o 2023-03-02T18:08:37,033 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-crc32.lo -MD -MP -MF .deps/libglpk_la-crc32.Tpo -c zlib/crc32.c -o libglpk_la-crc32.o >/dev/null 2>&1 2023-03-02T18:08:37,861 mv -f .deps/libglpk_la-crc32.Tpo .deps/libglpk_la-crc32.Plo 2023-03-02T18:08:37,895 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-deflate.lo -MD -MP -MF .deps/libglpk_la-deflate.Tpo -c -o libglpk_la-deflate.lo `test -f 'zlib/deflate.c' || echo './'`zlib/deflate.c 2023-03-02T18:08:38,055 libtool: compile: 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-I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-uncompr.lo -MD -MP -MF .deps/libglpk_la-uncompr.Tpo -c -o libglpk_la-uncompr.lo `test -f 'zlib/uncompr.c' || echo './'`zlib/uncompr.c 2023-03-02T18:09:08,086 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-uncompr.lo -MD -MP -MF .deps/libglpk_la-uncompr.Tpo -c zlib/uncompr.c -fPIC -DPIC -o .libs/libglpk_la-uncompr.o 2023-03-02T18:09:08,292 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-uncompr.lo -MD -MP -MF .deps/libglpk_la-uncompr.Tpo -c zlib/uncompr.c -o libglpk_la-uncompr.o >/dev/null 2>&1 2023-03-02T18:09:08,527 mv -f .deps/libglpk_la-uncompr.Tpo .deps/libglpk_la-uncompr.Plo 2023-03-02T18:09:08,562 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zio.lo -MD -MP -MF .deps/libglpk_la-zio.Tpo -c -o libglpk_la-zio.lo `test -f 'zlib/zio.c' || echo './'`zlib/zio.c 2023-03-02T18:09:08,727 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zio.lo -MD -MP -MF .deps/libglpk_la-zio.Tpo -c zlib/zio.c -fPIC -DPIC -o .libs/libglpk_la-zio.o 2023-03-02T18:09:09,186 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zio.lo -MD -MP -MF .deps/libglpk_la-zio.Tpo -c zlib/zio.c -o libglpk_la-zio.o >/dev/null 2>&1 2023-03-02T18:09:09,631 mv -f .deps/libglpk_la-zio.Tpo .deps/libglpk_la-zio.Plo 2023-03-02T18:09:09,664 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zutil.lo -MD -MP -MF .deps/libglpk_la-zutil.Tpo -c -o libglpk_la-zutil.lo `test -f 'zlib/zutil.c' || echo './'`zlib/zutil.c 2023-03-02T18:09:09,827 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zutil.lo -MD -MP -MF .deps/libglpk_la-zutil.Tpo -c zlib/zutil.c -fPIC -DPIC -o .libs/libglpk_la-zutil.o 2023-03-02T18:09:10,121 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zutil.lo -MD -MP -MF .deps/libglpk_la-zutil.Tpo -c zlib/zutil.c -o libglpk_la-zutil.o >/dev/null 2>&1 2023-03-02T18:09:10,443 mv -f .deps/libglpk_la-zutil.Tpo .deps/libglpk_la-zutil.Plo 2023-03-02T18:09:10,475 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -version-info 37:2:1 -export-symbols-regex '^glp_*' -o libglpk.la -rpath /usr/lib libglpk_la-avl.lo libglpk_la-bfd.lo libglpk_la-bfx.lo libglpk_la-glpapi01.lo libglpk_la-glpapi02.lo libglpk_la-glpapi03.lo libglpk_la-glpapi04.lo libglpk_la-glpapi05.lo libglpk_la-glpapi06.lo libglpk_la-glpapi07.lo libglpk_la-glpapi08.lo libglpk_la-glpapi09.lo libglpk_la-glpapi10.lo libglpk_la-glpapi11.lo libglpk_la-glpapi12.lo libglpk_la-glpapi13.lo libglpk_la-glpapi14.lo libglpk_la-glpapi15.lo libglpk_la-glpapi16.lo libglpk_la-glpapi17.lo libglpk_la-glpapi18.lo libglpk_la-glpapi19.lo libglpk_la-glpapi20.lo libglpk_la-glpapi21.lo libglpk_la-glpcpx.lo libglpk_la-glpdmx.lo libglpk_la-glpgmp.lo libglpk_la-glphbm.lo libglpk_la-glpini01.lo libglpk_la-glpini02.lo libglpk_la-glpios01.lo libglpk_la-glpios02.lo libglpk_la-glpios03.lo libglpk_la-glpios04.lo libglpk_la-glpios05.lo libglpk_la-glpios06.lo libglpk_la-glpios07.lo libglpk_la-glpios08.lo libglpk_la-glpios09.lo libglpk_la-glpios10.lo libglpk_la-glpios11.lo libglpk_la-glpios12.lo libglpk_la-glpipm.lo libglpk_la-glpmat.lo libglpk_la-glpmpl01.lo libglpk_la-glpmpl02.lo libglpk_la-glpmpl03.lo libglpk_la-glpmpl04.lo libglpk_la-glpmpl05.lo libglpk_la-glpmpl06.lo libglpk_la-glpmps.lo libglpk_la-glpnet03.lo libglpk_la-glpnet04.lo libglpk_la-glpnet05.lo libglpk_la-glpnpp01.lo libglpk_la-glpnpp02.lo libglpk_la-glpnpp03.lo libglpk_la-glpnpp04.lo libglpk_la-glpnpp05.lo libglpk_la-glpnpp06.lo libglpk_la-glprgr.lo libglpk_la-glpscl.lo libglpk_la-glpsdf.lo libglpk_la-glpspm.lo libglpk_la-glpspx01.lo libglpk_la-glpspx02.lo libglpk_la-glpsql.lo libglpk_la-glpssx01.lo libglpk_la-glpssx02.lo libglpk_la-glptsp.lo libglpk_la-lux.lo libglpk_la-amd_1.lo libglpk_la-amd_2.lo libglpk_la-amd_aat.lo libglpk_la-amd_control.lo libglpk_la-amd_defaults.lo libglpk_la-amd_dump.lo libglpk_la-amd_info.lo libglpk_la-amd_order.lo libglpk_la-amd_post_tree.lo libglpk_la-amd_postorder.lo libglpk_la-amd_preprocess.lo libglpk_la-amd_valid.lo libglpk_la-btf.lo libglpk_la-btfint.lo libglpk_la-fhv.lo libglpk_la-fhvint.lo libglpk_la-ifu.lo libglpk_la-luf.lo libglpk_la-lufint.lo libglpk_la-scf.lo libglpk_la-scfint.lo libglpk_la-sgf.lo libglpk_la-sva.lo libglpk_la-cfg.lo libglpk_la-cfg1.lo libglpk_la-colamd.lo libglpk_la-alloc.lo libglpk_la-dlsup.lo libglpk_la-env.lo libglpk_la-error.lo libglpk_la-stdout.lo libglpk_la-stream.lo libglpk_la-time.lo libglpk_la-tls.lo libglpk_la-minisat.lo libglpk_la-bignum.lo libglpk_la-dmp.lo libglpk_la-ffalg.lo libglpk_la-fp2rat.lo libglpk_la-gcd.lo libglpk_la-jd.lo libglpk_la-keller.lo libglpk_la-mc13d.lo libglpk_la-mc21a.lo libglpk_la-okalg.lo libglpk_la-qmd.lo libglpk_la-relax4.lo libglpk_la-rng.lo libglpk_la-rng1.lo libglpk_la-round2n.lo libglpk_la-str2int.lo libglpk_la-str2num.lo libglpk_la-strspx.lo libglpk_la-strtrim.lo libglpk_la-triang.lo libglpk_la-wclique.lo libglpk_la-wclique1.lo libglpk_la-proxy.lo libglpk_la-proxy1.lo libglpk_la-adler32.lo libglpk_la-compress.lo libglpk_la-crc32.lo libglpk_la-deflate.lo libglpk_la-gzclose.lo libglpk_la-gzlib.lo libglpk_la-gzread.lo libglpk_la-gzwrite.lo libglpk_la-inffast.lo libglpk_la-inflate.lo libglpk_la-inftrees.lo libglpk_la-trees.lo libglpk_la-uncompr.lo libglpk_la-zio.lo libglpk_la-zutil.lo -lm 2023-03-02T18:09:11,538 libtool: link: /usr/bin/nm -B .libs/libglpk_la-avl.o .libs/libglpk_la-bfd.o .libs/libglpk_la-bfx.o .libs/libglpk_la-glpapi01.o .libs/libglpk_la-glpapi02.o .libs/libglpk_la-glpapi03.o .libs/libglpk_la-glpapi04.o .libs/libglpk_la-glpapi05.o .libs/libglpk_la-glpapi06.o .libs/libglpk_la-glpapi07.o .libs/libglpk_la-glpapi08.o .libs/libglpk_la-glpapi09.o .libs/libglpk_la-glpapi10.o .libs/libglpk_la-glpapi11.o .libs/libglpk_la-glpapi12.o .libs/libglpk_la-glpapi13.o .libs/libglpk_la-glpapi14.o .libs/libglpk_la-glpapi15.o .libs/libglpk_la-glpapi16.o .libs/libglpk_la-glpapi17.o .libs/libglpk_la-glpapi18.o .libs/libglpk_la-glpapi19.o .libs/libglpk_la-glpapi20.o .libs/libglpk_la-glpapi21.o .libs/libglpk_la-glpcpx.o .libs/libglpk_la-glpdmx.o .libs/libglpk_la-glpgmp.o .libs/libglpk_la-glphbm.o .libs/libglpk_la-glpini01.o .libs/libglpk_la-glpini02.o .libs/libglpk_la-glpios01.o .libs/libglpk_la-glpios02.o .libs/libglpk_la-glpios03.o .libs/libglpk_la-glpios04.o .libs/libglpk_la-glpios05.o .libs/libglpk_la-glpios06.o .libs/libglpk_la-glpios07.o .libs/libglpk_la-glpios08.o .libs/libglpk_la-glpios09.o .libs/libglpk_la-glpios10.o .libs/libglpk_la-glpios11.o .libs/libglpk_la-glpios12.o .libs/libglpk_la-glpipm.o .libs/libglpk_la-glpmat.o .libs/libglpk_la-glpmpl01.o .libs/libglpk_la-glpmpl02.o .libs/libglpk_la-glpmpl03.o .libs/libglpk_la-glpmpl04.o .libs/libglpk_la-glpmpl05.o .libs/libglpk_la-glpmpl06.o .libs/libglpk_la-glpmps.o .libs/libglpk_la-glpnet03.o .libs/libglpk_la-glpnet04.o .libs/libglpk_la-glpnet05.o .libs/libglpk_la-glpnpp01.o .libs/libglpk_la-glpnpp02.o .libs/libglpk_la-glpnpp03.o .libs/libglpk_la-glpnpp04.o .libs/libglpk_la-glpnpp05.o .libs/libglpk_la-glpnpp06.o .libs/libglpk_la-glprgr.o .libs/libglpk_la-glpscl.o .libs/libglpk_la-glpsdf.o .libs/libglpk_la-glpspm.o .libs/libglpk_la-glpspx01.o .libs/libglpk_la-glpspx02.o .libs/libglpk_la-glpsql.o .libs/libglpk_la-glpssx01.o .libs/libglpk_la-glpssx02.o .libs/libglpk_la-glptsp.o .libs/libglpk_la-lux.o .libs/libglpk_la-amd_1.o .libs/libglpk_la-amd_2.o .libs/libglpk_la-amd_aat.o .libs/libglpk_la-amd_control.o .libs/libglpk_la-amd_defaults.o .libs/libglpk_la-amd_dump.o .libs/libglpk_la-amd_info.o .libs/libglpk_la-amd_order.o .libs/libglpk_la-amd_post_tree.o .libs/libglpk_la-amd_postorder.o .libs/libglpk_la-amd_preprocess.o .libs/libglpk_la-amd_valid.o .libs/libglpk_la-btf.o .libs/libglpk_la-btfint.o .libs/libglpk_la-fhv.o .libs/libglpk_la-fhvint.o .libs/libglpk_la-ifu.o .libs/libglpk_la-luf.o .libs/libglpk_la-lufint.o .libs/libglpk_la-scf.o .libs/libglpk_la-scfint.o .libs/libglpk_la-sgf.o .libs/libglpk_la-sva.o .libs/libglpk_la-cfg.o .libs/libglpk_la-cfg1.o .libs/libglpk_la-colamd.o .libs/libglpk_la-alloc.o .libs/libglpk_la-dlsup.o .libs/libglpk_la-env.o .libs/libglpk_la-error.o .libs/libglpk_la-stdout.o .libs/libglpk_la-stream.o .libs/libglpk_la-time.o .libs/libglpk_la-tls.o .libs/libglpk_la-minisat.o .libs/libglpk_la-bignum.o .libs/libglpk_la-dmp.o .libs/libglpk_la-ffalg.o .libs/libglpk_la-fp2rat.o .libs/libglpk_la-gcd.o .libs/libglpk_la-jd.o .libs/libglpk_la-keller.o .libs/libglpk_la-mc13d.o .libs/libglpk_la-mc21a.o .libs/libglpk_la-okalg.o .libs/libglpk_la-qmd.o .libs/libglpk_la-relax4.o .libs/libglpk_la-rng.o .libs/libglpk_la-rng1.o .libs/libglpk_la-round2n.o .libs/libglpk_la-str2int.o .libs/libglpk_la-str2num.o .libs/libglpk_la-strspx.o .libs/libglpk_la-strtrim.o .libs/libglpk_la-triang.o .libs/libglpk_la-wclique.o .libs/libglpk_la-wclique1.o .libs/libglpk_la-proxy.o .libs/libglpk_la-proxy1.o .libs/libglpk_la-adler32.o .libs/libglpk_la-compress.o .libs/libglpk_la-crc32.o .libs/libglpk_la-deflate.o .libs/libglpk_la-gzclose.o .libs/libglpk_la-gzlib.o .libs/libglpk_la-gzread.o .libs/libglpk_la-gzwrite.o .libs/libglpk_la-inffast.o .libs/libglpk_la-inflate.o .libs/libglpk_la-inftrees.o .libs/libglpk_la-trees.o .libs/libglpk_la-uncompr.o .libs/libglpk_la-zio.o .libs/libglpk_la-zutil.o | sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' | /usr/bin/sed 's/.* //' | sort | uniq > .libs/libglpk.exp 2023-03-02T18:09:11,910 libtool: link: /usr/bin/grep -E -e "^glp_*" ".libs/libglpk.exp" > ".libs/libglpk.expT" 2023-03-02T18:09:11,950 libtool: link: mv -f ".libs/libglpk.expT" ".libs/libglpk.exp" 2023-03-02T18:09:12,000 libtool: link: echo "{ global:" > .libs/libglpk.ver 2023-03-02T18:09:12,027 libtool: link: cat .libs/libglpk.exp | sed -e "s/\(.*\)/\1;/" >> .libs/libglpk.ver 2023-03-02T18:09:12,080 libtool: link: echo "local: *; };" >> .libs/libglpk.ver 2023-03-02T18:09:12,090 libtool: link: gcc -shared -fPIC -DPIC .libs/libglpk_la-avl.o .libs/libglpk_la-bfd.o .libs/libglpk_la-bfx.o .libs/libglpk_la-glpapi01.o .libs/libglpk_la-glpapi02.o .libs/libglpk_la-glpapi03.o .libs/libglpk_la-glpapi04.o .libs/libglpk_la-glpapi05.o .libs/libglpk_la-glpapi06.o .libs/libglpk_la-glpapi07.o .libs/libglpk_la-glpapi08.o .libs/libglpk_la-glpapi09.o .libs/libglpk_la-glpapi10.o .libs/libglpk_la-glpapi11.o .libs/libglpk_la-glpapi12.o .libs/libglpk_la-glpapi13.o .libs/libglpk_la-glpapi14.o .libs/libglpk_la-glpapi15.o .libs/libglpk_la-glpapi16.o .libs/libglpk_la-glpapi17.o .libs/libglpk_la-glpapi18.o .libs/libglpk_la-glpapi19.o .libs/libglpk_la-glpapi20.o .libs/libglpk_la-glpapi21.o .libs/libglpk_la-glpcpx.o .libs/libglpk_la-glpdmx.o .libs/libglpk_la-glpgmp.o .libs/libglpk_la-glphbm.o .libs/libglpk_la-glpini01.o .libs/libglpk_la-glpini02.o .libs/libglpk_la-glpios01.o .libs/libglpk_la-glpios02.o .libs/libglpk_la-glpios03.o .libs/libglpk_la-glpios04.o .libs/libglpk_la-glpios05.o .libs/libglpk_la-glpios06.o .libs/libglpk_la-glpios07.o .libs/libglpk_la-glpios08.o .libs/libglpk_la-glpios09.o .libs/libglpk_la-glpios10.o .libs/libglpk_la-glpios11.o .libs/libglpk_la-glpios12.o .libs/libglpk_la-glpipm.o .libs/libglpk_la-glpmat.o .libs/libglpk_la-glpmpl01.o .libs/libglpk_la-glpmpl02.o .libs/libglpk_la-glpmpl03.o .libs/libglpk_la-glpmpl04.o .libs/libglpk_la-glpmpl05.o .libs/libglpk_la-glpmpl06.o .libs/libglpk_la-glpmps.o .libs/libglpk_la-glpnet03.o .libs/libglpk_la-glpnet04.o .libs/libglpk_la-glpnet05.o .libs/libglpk_la-glpnpp01.o .libs/libglpk_la-glpnpp02.o .libs/libglpk_la-glpnpp03.o .libs/libglpk_la-glpnpp04.o .libs/libglpk_la-glpnpp05.o .libs/libglpk_la-glpnpp06.o .libs/libglpk_la-glprgr.o .libs/libglpk_la-glpscl.o .libs/libglpk_la-glpsdf.o .libs/libglpk_la-glpspm.o .libs/libglpk_la-glpspx01.o .libs/libglpk_la-glpspx02.o .libs/libglpk_la-glpsql.o .libs/libglpk_la-glpssx01.o .libs/libglpk_la-glpssx02.o .libs/libglpk_la-glptsp.o .libs/libglpk_la-lux.o .libs/libglpk_la-amd_1.o .libs/libglpk_la-amd_2.o .libs/libglpk_la-amd_aat.o .libs/libglpk_la-amd_control.o .libs/libglpk_la-amd_defaults.o .libs/libglpk_la-amd_dump.o .libs/libglpk_la-amd_info.o .libs/libglpk_la-amd_order.o .libs/libglpk_la-amd_post_tree.o .libs/libglpk_la-amd_postorder.o .libs/libglpk_la-amd_preprocess.o .libs/libglpk_la-amd_valid.o .libs/libglpk_la-btf.o .libs/libglpk_la-btfint.o .libs/libglpk_la-fhv.o .libs/libglpk_la-fhvint.o .libs/libglpk_la-ifu.o .libs/libglpk_la-luf.o .libs/libglpk_la-lufint.o .libs/libglpk_la-scf.o .libs/libglpk_la-scfint.o .libs/libglpk_la-sgf.o .libs/libglpk_la-sva.o .libs/libglpk_la-cfg.o .libs/libglpk_la-cfg1.o .libs/libglpk_la-colamd.o .libs/libglpk_la-alloc.o .libs/libglpk_la-dlsup.o .libs/libglpk_la-env.o .libs/libglpk_la-error.o .libs/libglpk_la-stdout.o .libs/libglpk_la-stream.o .libs/libglpk_la-time.o .libs/libglpk_la-tls.o .libs/libglpk_la-minisat.o .libs/libglpk_la-bignum.o .libs/libglpk_la-dmp.o .libs/libglpk_la-ffalg.o .libs/libglpk_la-fp2rat.o .libs/libglpk_la-gcd.o .libs/libglpk_la-jd.o .libs/libglpk_la-keller.o .libs/libglpk_la-mc13d.o .libs/libglpk_la-mc21a.o .libs/libglpk_la-okalg.o .libs/libglpk_la-qmd.o .libs/libglpk_la-relax4.o .libs/libglpk_la-rng.o .libs/libglpk_la-rng1.o .libs/libglpk_la-round2n.o .libs/libglpk_la-str2int.o .libs/libglpk_la-str2num.o .libs/libglpk_la-strspx.o .libs/libglpk_la-strtrim.o .libs/libglpk_la-triang.o .libs/libglpk_la-wclique.o .libs/libglpk_la-wclique1.o .libs/libglpk_la-proxy.o .libs/libglpk_la-proxy1.o .libs/libglpk_la-adler32.o .libs/libglpk_la-compress.o .libs/libglpk_la-crc32.o .libs/libglpk_la-deflate.o .libs/libglpk_la-gzclose.o .libs/libglpk_la-gzlib.o .libs/libglpk_la-gzread.o .libs/libglpk_la-gzwrite.o .libs/libglpk_la-inffast.o .libs/libglpk_la-inflate.o .libs/libglpk_la-inftrees.o .libs/libglpk_la-trees.o .libs/libglpk_la-uncompr.o .libs/libglpk_la-zio.o .libs/libglpk_la-zutil.o -lm -O2 -Wl,-soname -Wl,libglpk.so.36 -Wl,-version-script -Wl,.libs/libglpk.ver -o .libs/libglpk.so.36.1.2 2023-03-02T18:09:13,619 libtool: link: (cd ".libs" && rm -f "libglpk.so.36" && ln -s "libglpk.so.36.1.2" "libglpk.so.36") 2023-03-02T18:09:13,668 libtool: link: (cd ".libs" && rm -f "libglpk.so" && ln -s "libglpk.so.36.1.2" "libglpk.so") 2023-03-02T18:09:13,856 libtool: link: ar cru .libs/libglpk.a libglpk_la-avl.o libglpk_la-bfd.o libglpk_la-bfx.o libglpk_la-glpapi01.o libglpk_la-glpapi02.o libglpk_la-glpapi03.o libglpk_la-glpapi04.o libglpk_la-glpapi05.o libglpk_la-glpapi06.o libglpk_la-glpapi07.o libglpk_la-glpapi08.o libglpk_la-glpapi09.o libglpk_la-glpapi10.o libglpk_la-glpapi11.o libglpk_la-glpapi12.o libglpk_la-glpapi13.o libglpk_la-glpapi14.o libglpk_la-glpapi15.o libglpk_la-glpapi16.o libglpk_la-glpapi17.o libglpk_la-glpapi18.o libglpk_la-glpapi19.o libglpk_la-glpapi20.o libglpk_la-glpapi21.o libglpk_la-glpcpx.o libglpk_la-glpdmx.o libglpk_la-glpgmp.o libglpk_la-glphbm.o libglpk_la-glpini01.o libglpk_la-glpini02.o libglpk_la-glpios01.o libglpk_la-glpios02.o libglpk_la-glpios03.o libglpk_la-glpios04.o libglpk_la-glpios05.o libglpk_la-glpios06.o libglpk_la-glpios07.o libglpk_la-glpios08.o libglpk_la-glpios09.o libglpk_la-glpios10.o libglpk_la-glpios11.o libglpk_la-glpios12.o libglpk_la-glpipm.o libglpk_la-glpmat.o libglpk_la-glpmpl01.o libglpk_la-glpmpl02.o libglpk_la-glpmpl03.o libglpk_la-glpmpl04.o libglpk_la-glpmpl05.o libglpk_la-glpmpl06.o libglpk_la-glpmps.o libglpk_la-glpnet03.o libglpk_la-glpnet04.o libglpk_la-glpnet05.o libglpk_la-glpnpp01.o libglpk_la-glpnpp02.o libglpk_la-glpnpp03.o libglpk_la-glpnpp04.o libglpk_la-glpnpp05.o libglpk_la-glpnpp06.o libglpk_la-glprgr.o libglpk_la-glpscl.o libglpk_la-glpsdf.o libglpk_la-glpspm.o libglpk_la-glpspx01.o libglpk_la-glpspx02.o libglpk_la-glpsql.o libglpk_la-glpssx01.o libglpk_la-glpssx02.o libglpk_la-glptsp.o libglpk_la-lux.o libglpk_la-amd_1.o libglpk_la-amd_2.o libglpk_la-amd_aat.o libglpk_la-amd_control.o libglpk_la-amd_defaults.o libglpk_la-amd_dump.o libglpk_la-amd_info.o libglpk_la-amd_order.o libglpk_la-amd_post_tree.o libglpk_la-amd_postorder.o libglpk_la-amd_preprocess.o libglpk_la-amd_valid.o libglpk_la-btf.o libglpk_la-btfint.o libglpk_la-fhv.o libglpk_la-fhvint.o libglpk_la-ifu.o libglpk_la-luf.o libglpk_la-lufint.o libglpk_la-scf.o libglpk_la-scfint.o libglpk_la-sgf.o libglpk_la-sva.o libglpk_la-cfg.o libglpk_la-cfg1.o libglpk_la-colamd.o libglpk_la-alloc.o libglpk_la-dlsup.o libglpk_la-env.o libglpk_la-error.o libglpk_la-stdout.o libglpk_la-stream.o libglpk_la-time.o libglpk_la-tls.o libglpk_la-minisat.o libglpk_la-bignum.o libglpk_la-dmp.o libglpk_la-ffalg.o libglpk_la-fp2rat.o libglpk_la-gcd.o libglpk_la-jd.o libglpk_la-keller.o libglpk_la-mc13d.o libglpk_la-mc21a.o libglpk_la-okalg.o libglpk_la-qmd.o libglpk_la-relax4.o libglpk_la-rng.o libglpk_la-rng1.o libglpk_la-round2n.o libglpk_la-str2int.o libglpk_la-str2num.o libglpk_la-strspx.o libglpk_la-strtrim.o libglpk_la-triang.o libglpk_la-wclique.o libglpk_la-wclique1.o libglpk_la-proxy.o libglpk_la-proxy1.o libglpk_la-adler32.o libglpk_la-compress.o libglpk_la-crc32.o libglpk_la-deflate.o libglpk_la-gzclose.o libglpk_la-gzlib.o libglpk_la-gzread.o libglpk_la-gzwrite.o libglpk_la-inffast.o libglpk_la-inflate.o libglpk_la-inftrees.o libglpk_la-trees.o libglpk_la-uncompr.o libglpk_la-zio.o libglpk_la-zutil.o 2023-03-02T18:09:13,871 ar: `u' modifier ignored since `D' is the default (see `U') 2023-03-02T18:09:14,505 libtool: link: ranlib .libs/libglpk.a 2023-03-02T18:09:15,281 libtool: link: ( cd ".libs" && rm -f "libglpk.la" && ln -s "../libglpk.la" "libglpk.la" ) 2023-03-02T18:09:15,308 make[2]: warning: Clock skew detected. Your build may be incomplete. 2023-03-02T18:09:15,308 make[2]: Leaving directory '/tmp/pip-wheel-38m6o_nd/humann_144365f949214baa8a2e468556df9cf7/glpk_download_34jt6yuy/glpk-4.55/src' 2023-03-02T18:09:15,309 Making all in examples 2023-03-02T18:09:15,344 make[2]: Entering directory '/tmp/pip-wheel-38m6o_nd/humann_144365f949214baa8a2e468556df9cf7/glpk_download_34jt6yuy/glpk-4.55/examples' 2023-03-02T18:09:15,344 gcc -DHAVE_CONFIG_H -I. -I.. -I./../src -g -O2 -MT glpsol.o -MD -MP -MF .deps/glpsol.Tpo -c -o glpsol.o glpsol.c 2023-03-02T18:09:15,534 mv -f .deps/glpsol.Tpo .deps/glpsol.Po 2023-03-02T18:09:15,564 make[2]: Warning: File '../src/libglpk.la' has modification time 1.8 s in the future 2023-03-02T18:09:15,590 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -o glpsol glpsol.o ../src/libglpk.la -lm 2023-03-02T18:09:16,125 libtool: link: gcc -g -O2 -o .libs/glpsol glpsol.o ../src/.libs/libglpk.so -lm 2023-03-02T18:09:16,414 make[2]: warning: Clock skew detected. Your build may be incomplete. 2023-03-02T18:09:16,415 make[2]: Leaving directory '/tmp/pip-wheel-38m6o_nd/humann_144365f949214baa8a2e468556df9cf7/glpk_download_34jt6yuy/glpk-4.55/examples' 2023-03-02T18:09:16,439 make[2]: Entering directory '/tmp/pip-wheel-38m6o_nd/humann_144365f949214baa8a2e468556df9cf7/glpk_download_34jt6yuy/glpk-4.55' 2023-03-02T18:09:16,469 make[2]: Leaving directory '/tmp/pip-wheel-38m6o_nd/humann_144365f949214baa8a2e468556df9cf7/glpk_download_34jt6yuy/glpk-4.55' 2023-03-02T18:09:16,472 make[1]: Leaving directory '/tmp/pip-wheel-38m6o_nd/humann_144365f949214baa8a2e468556df9cf7/glpk_download_34jt6yuy/glpk-4.55' 2023-03-02T18:09:16,541 Making install in src 2023-03-02T18:09:17,037 make[1]: Entering directory '/tmp/pip-wheel-38m6o_nd/humann_144365f949214baa8a2e468556df9cf7/glpk_download_34jt6yuy/glpk-4.55/src' 2023-03-02T18:09:17,037 make[1]: Warning: File 'libglpk.la' has modification time 0.3 s in the future 2023-03-02T18:09:17,591 make[2]: Entering directory '/tmp/pip-wheel-38m6o_nd/humann_144365f949214baa8a2e468556df9cf7/glpk_download_34jt6yuy/glpk-4.55/src' 2023-03-02T18:09:17,606 /usr/bin/mkdir -p '/usr/lib' 2023-03-02T18:09:17,622 /bin/bash ../libtool --mode=install /usr/bin/install -c libglpk.la '/usr/lib' 2023-03-02T18:09:17,741 libtool: install: /usr/bin/install -c .libs/libglpk.so.36.1.2 /usr/lib/libglpk.so.36.1.2 2023-03-02T18:09:17,754 /usr/bin/install: cannot create regular file '/usr/lib/libglpk.so.36.1.2': Permission denied 2023-03-02T18:09:17,762 make[2]: *** [Makefile:503: install-libLTLIBRARIES] Error 1 2023-03-02T18:09:17,763 make[2]: Leaving directory '/tmp/pip-wheel-38m6o_nd/humann_144365f949214baa8a2e468556df9cf7/glpk_download_34jt6yuy/glpk-4.55/src' 2023-03-02T18:09:17,765 make[1]: *** [Makefile:1862: install-am] Error 2 2023-03-02T18:09:17,766 make[1]: Leaving directory '/tmp/pip-wheel-38m6o_nd/humann_144365f949214baa8a2e468556df9cf7/glpk_download_34jt6yuy/glpk-4.55/src' 2023-03-02T18:09:17,770 make: *** [Makefile:320: install-recursive] Error 1 2023-03-02T18:09:18,267 Installing diamond. 2023-03-02T18:09:18,267 Downloading http://github.com/bbuchfink/diamond/releases/download/v2.0.15/diamond-linux64.tar.gz 2023-03-02T18:09:19,064 Downloading file of size: 12.47 MB 2023-03-02T18:09:19,142 0.01 MB 0.06 % 5.47 MB/sec 0 min 2 sec 2023-03-02T18:09:19,145 0.02 MB 0.13 % 0.20 MB/sec 1 min 2 sec 2023-03-02T18:09:19,146 0.02 MB 0.19 % 0.29 MB/sec 0 min 43 sec 2023-03-02T18:09:19,147 0.03 MB 0.25 % 0.38 MB/sec 0 min 33 sec 2023-03-02T18:09:19,212 0.04 MB 0.31 % 0.47 MB/sec 0 min 26 sec 2023-03-02T18:09:19,212 0.05 MB 0.38 % 0.32 MB/sec 0 min 39 sec 2023-03-02T18:09:19,214 0.05 MB 0.44 % 0.37 MB/sec 0 min 34 sec 2023-03-02T18:09:19,215 0.06 MB 0.50 % 0.42 MB/sec 0 min 30 sec 2023-03-02T18:09:19,215 0.07 MB 0.56 % 0.47 MB/sec 0 min 26 sec 2023-03-02T18:09:19,216 0.08 MB 0.63 % 0.52 MB/sec 0 min 24 sec 2023-03-02T18:09:19,292 0.09 MB 0.69 % 0.57 MB/sec 0 min 22 sec 2023-03-02T18:09:19,292 0.09 MB 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2023-03-02T18:09:19,372 0.22 MB 1.75 % 0.71 MB/sec 0 min 17 sec 2023-03-02T18:09:19,374 0.23 MB 1.82 % 0.74 MB/sec 0 min 17 sec 2023-03-02T18:09:19,374 0.23 MB 1.88 % 0.76 MB/sec 0 min 16 sec 2023-03-02T18:09:19,436 0.24 MB 1.94 % 0.78 MB/sec 0 min 16 sec 2023-03-02T18:09:19,437 0.25 MB 2.00 % 0.67 MB/sec 0 min 18 sec 2023-03-02T18:09:19,439 0.26 MB 2.07 % 0.69 MB/sec 0 min 18 sec 2023-03-02T18:09:19,440 0.27 MB 2.13 % 0.71 MB/sec 0 min 17 sec 2023-03-02T18:09:19,444 0.27 MB 2.19 % 0.73 MB/sec 0 min 17 sec 2023-03-02T18:09:19,444 0.28 MB 2.25 % 0.74 MB/sec 0 min 16 sec 2023-03-02T18:09:19,446 0.29 MB 2.32 % 0.76 MB/sec 0 min 16 sec 2023-03-02T18:09:19,446 0.30 MB 2.38 % 0.78 MB/sec 0 min 16 sec 2023-03-02T18:09:19,448 0.30 MB 2.44 % 0.80 MB/sec 0 min 15 sec 2023-03-02T18:09:19,448 0.31 MB 2.51 % 0.81 MB/sec 0 min 15 sec 2023-03-02T18:09:19,450 0.32 MB 2.57 % 0.83 MB/sec 0 min 15 sec 2023-03-02T18:09:19,450 0.33 MB 2.63 % 0.85 MB/sec 0 min 14 sec 2023-03-02T18:09:19,451 0.34 MB 2.69 % 0.87 MB/sec 0 min 14 sec 2023-03-02T18:09:19,452 0.34 MB 2.76 % 0.89 MB/sec 0 min 14 sec 2023-03-02T18:09:19,453 0.35 MB 2.82 % 0.91 MB/sec 0 min 13 sec 2023-03-02T18:09:19,453 0.36 MB 2.88 % 0.92 MB/sec 0 min 13 sec 2023-03-02T18:09:19,508 0.37 MB 2.94 % 0.94 MB/sec 0 min 13 sec 2023-03-02T18:09:19,509 0.38 MB 3.01 % 0.84 MB/sec 0 min 14 sec 2023-03-02T18:09:19,513 0.38 MB 3.07 % 0.86 MB/sec 0 min 14 sec 2023-03-02T18:09:19,514 0.39 MB 3.13 % 0.87 MB/sec 0 min 14 sec 2023-03-02T18:09:19,517 0.40 MB 3.19 % 0.89 MB/sec 0 min 14 sec 2023-03-02T18:09:19,518 0.41 MB 3.26 % 0.90 MB/sec 0 min 13 sec 2023-03-02T18:09:19,521 0.41 MB 3.32 % 0.91 MB/sec 0 min 13 sec 2023-03-02T18:09:19,522 0.42 MB 3.38 % 0.92 MB/sec 0 min 13 sec 2023-03-02T18:09:19,525 0.43 MB 3.45 % 0.94 MB/sec 0 min 13 sec 2023-03-02T18:09:19,525 0.44 MB 3.51 % 0.95 MB/sec 0 min 13 sec 2023-03-02T18:09:19,526 0.45 MB 3.57 % 0.97 MB/sec 0 min 12 sec 2023-03-02T18:09:19,527 0.45 MB 3.63 % 0.98 MB/sec 0 min 12 sec 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MB/sec 0 min 0 sec 2023-03-02T18:09:21,354 11.00 MB 88.19 % 4.81 MB/sec 0 min 0 sec 2023-03-02T18:09:21,355 11.01 MB 88.26 % 4.81 MB/sec 0 min 0 sec 2023-03-02T18:09:21,356 11.02 MB 88.32 % 4.81 MB/sec 0 min 0 sec 2023-03-02T18:09:21,356 11.02 MB 88.38 % 4.81 MB/sec 0 min 0 sec 2023-03-02T18:09:21,358 11.03 MB 88.45 % 4.81 MB/sec 0 min 0 sec 2023-03-02T18:09:21,358 11.04 MB 88.51 % 4.81 MB/sec 0 min 0 sec 2023-03-02T18:09:21,360 11.05 MB 88.57 % 4.82 MB/sec 0 min 0 sec 2023-03-02T18:09:21,360 11.05 MB 88.63 % 4.82 MB/sec 0 min 0 sec 2023-03-02T18:09:21,362 11.06 MB 88.70 % 4.82 MB/sec 0 min 0 sec 2023-03-02T18:09:21,362 11.07 MB 88.76 % 4.82 MB/sec 0 min 0 sec 2023-03-02T18:09:21,364 11.08 MB 88.82 % 4.82 MB/sec 0 min 0 sec 2023-03-02T18:09:21,364 11.09 MB 88.88 % 4.82 MB/sec 0 min 0 sec 2023-03-02T18:09:21,365 11.09 MB 88.95 % 4.82 MB/sec 0 min 0 sec 2023-03-02T18:09:21,366 11.10 MB 89.01 % 4.82 MB/sec 0 min 0 sec 2023-03-02T18:09:21,367 11.11 MB 89.07 % 4.83 MB/sec 0 min 0 sec 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12.31 MB 98.72 % 5.05 MB/sec 0 min 0 sec 2023-03-02T18:09:21,505 12.32 MB 98.78 % 5.05 MB/sec 0 min 0 sec 2023-03-02T18:09:21,506 12.33 MB 98.84 % 5.05 MB/sec 0 min 0 sec 2023-03-02T18:09:21,506 12.34 MB 98.91 % 5.05 MB/sec 0 min 0 sec 2023-03-02T18:09:21,508 12.34 MB 98.97 % 5.05 MB/sec 0 min 0 sec 2023-03-02T18:09:21,508 12.35 MB 99.03 % 5.05 MB/sec 0 min 0 sec 2023-03-02T18:09:21,510 12.36 MB 99.09 % 5.06 MB/sec 0 min 0 sec 2023-03-02T18:09:21,510 12.37 MB 99.16 % 5.06 MB/sec 0 min 0 sec 2023-03-02T18:09:21,511 12.38 MB 99.22 % 5.06 MB/sec 0 min 0 sec 2023-03-02T18:09:21,512 12.38 MB 99.28 % 5.06 MB/sec 0 min 0 sec 2023-03-02T18:09:21,513 12.39 MB 99.34 % 5.06 MB/sec 0 min 0 sec 2023-03-02T18:09:21,513 12.40 MB 99.41 % 5.06 MB/sec 0 min 0 sec 2023-03-02T18:09:21,515 12.41 MB 99.47 % 5.07 MB/sec 0 min 0 sec 2023-03-02T18:09:21,515 12.41 MB 99.53 % 5.07 MB/sec 0 min 0 sec 2023-03-02T18:09:21,517 12.42 MB 99.60 % 5.07 MB/sec 0 min 0 sec 2023-03-02T18:09:21,517 12.43 MB 99.66 % 5.07 MB/sec 0 min 0 sec 2023-03-02T18:09:21,518 12.44 MB 99.72 % 5.07 MB/sec 0 min 0 sec 2023-03-02T18:09:21,519 12.45 MB 99.78 % 5.07 MB/sec 0 min 0 sec 2023-03-02T18:09:21,520 12.45 MB 99.85 % 5.07 MB/sec 0 min 0 sec 2023-03-02T18:09:21,521 12.46 MB 99.91 % 5.07 MB/sec 0 min 0 sec 2023-03-02T18:09:21,521 12.47 MB 99.97 % 5.08 MB/sec 0 min 0 sec 2023-03-02T18:09:22,005 12.48 MB 100.03 % 5.08 MB/sec 0 min -0 sec 2023-03-02T18:09:25,017 [Errno 13] Permission denied: '/usr/bin/diamond' 2023-03-02T18:09:25,049 WARNING: Unable to install diamond. Please install diamond. 2023-03-02T18:09:25,053 Installing bowtie2. 2023-03-02T18:09:25,053 Downloading http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.3/bowtie2-2.2.3-linux-x86_64.zip 2023-03-02T18:09:26,890 Downloading file of size: 25.18 MB 2023-03-02T18:09:26,892 0.01 MB 0.03 % 19.80 MB/sec 0 min 1 sec 2023-03-02T18:09:26,893 0.02 MB 0.06 % 7.08 MB/sec 0 min 4 sec 2023-03-02T18:09:26,917 0.02 MB 0.09 % 9.44 MB/sec 0 min 3 sec 2023-03-02T18:09:26,918 0.03 MB 0.12 % 1.15 MB/sec 0 min 22 sec 2023-03-02T18:09:26,919 0.04 MB 0.16 % 1.42 MB/sec 0 min 18 sec 2023-03-02T18:09:26,920 0.05 MB 0.19 % 1.61 MB/sec 0 min 16 sec 2023-03-02T18:09:26,921 0.05 MB 0.22 % 1.85 MB/sec 0 min 14 sec 2023-03-02T18:09:26,922 0.06 MB 0.25 % 2.00 MB/sec 0 min 13 sec 2023-03-02T18:09:26,936 0.07 MB 0.28 % 2.23 MB/sec 0 min 11 sec 2023-03-02T18:09:26,936 0.08 MB 0.31 % 1.70 MB/sec 0 min 15 sec 2023-03-02T18:09:26,942 0.09 MB 0.34 % 1.86 MB/sec 0 min 13 sec 2023-03-02T18:09:26,942 0.09 MB 0.37 % 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MB 7.73 % 5.64 MB/sec 0 min 4 sec 2023-03-02T18:09:27,238 1.95 MB 7.76 % 5.63 MB/sec 0 min 4 sec 2023-03-02T18:09:27,240 1.96 MB 7.79 % 5.65 MB/sec 0 min 4 sec 2023-03-02T18:09:27,240 1.97 MB 7.82 % 5.63 MB/sec 0 min 4 sec 2023-03-02T18:09:27,242 1.98 MB 7.85 % 5.65 MB/sec 0 min 4 sec 2023-03-02T18:09:27,242 1.98 MB 7.88 % 5.64 MB/sec 0 min 4 sec 2023-03-02T18:09:27,244 1.99 MB 7.91 % 5.66 MB/sec 0 min 4 sec 2023-03-02T18:09:27,244 2.00 MB 7.94 % 5.65 MB/sec 0 min 4 sec 2023-03-02T18:09:27,247 2.01 MB 7.97 % 5.67 MB/sec 0 min 4 sec 2023-03-02T18:09:27,247 2.02 MB 8.01 % 5.65 MB/sec 0 min 4 sec 2023-03-02T18:09:27,249 2.02 MB 8.04 % 5.67 MB/sec 0 min 4 sec 2023-03-02T18:09:27,249 2.03 MB 8.07 % 5.66 MB/sec 0 min 4 sec 2023-03-02T18:09:27,251 2.04 MB 8.10 % 5.68 MB/sec 0 min 4 sec 2023-03-02T18:09:27,251 2.05 MB 8.13 % 5.68 MB/sec 0 min 4 sec 2023-03-02T18:09:27,253 2.05 MB 8.16 % 5.69 MB/sec 0 min 4 sec 2023-03-02T18:09:27,253 2.06 MB 8.19 % 5.69 MB/sec 0 min 4 sec 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min 4 sec 2023-03-02T18:09:27,273 2.20 MB 8.72 % 5.75 MB/sec 0 min 4 sec 2023-03-02T18:09:27,274 2.20 MB 8.75 % 5.75 MB/sec 0 min 4 sec 2023-03-02T18:09:27,275 2.21 MB 8.78 % 5.76 MB/sec 0 min 4 sec 2023-03-02T18:09:27,276 2.22 MB 8.81 % 5.76 MB/sec 0 min 4 sec 2023-03-02T18:09:27,278 2.23 MB 8.84 % 5.78 MB/sec 0 min 4 sec 2023-03-02T18:09:27,278 2.23 MB 8.87 % 5.76 MB/sec 0 min 4 sec 2023-03-02T18:09:27,280 2.24 MB 8.91 % 5.78 MB/sec 0 min 4 sec 2023-03-02T18:09:27,281 2.25 MB 8.94 % 5.77 MB/sec 0 min 4 sec 2023-03-02T18:09:27,283 2.26 MB 8.97 % 5.78 MB/sec 0 min 4 sec 2023-03-02T18:09:27,283 2.27 MB 9.00 % 5.77 MB/sec 0 min 4 sec 2023-03-02T18:09:27,285 2.27 MB 9.03 % 5.79 MB/sec 0 min 4 sec 2023-03-02T18:09:27,285 2.28 MB 9.06 % 5.78 MB/sec 0 min 4 sec 2023-03-02T18:09:27,287 2.29 MB 9.09 % 5.79 MB/sec 0 min 4 sec 2023-03-02T18:09:27,288 2.30 MB 9.12 % 5.78 MB/sec 0 min 4 sec 2023-03-02T18:09:27,290 2.30 MB 9.15 % 5.80 MB/sec 0 min 4 sec 2023-03-02T18:09:27,290 2.31 MB 9.18 % 5.78 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% 5.83 MB/sec 0 min 4 sec 2023-03-02T18:09:27,311 2.45 MB 9.71 % 5.84 MB/sec 0 min 4 sec 2023-03-02T18:09:27,312 2.45 MB 9.74 % 5.83 MB/sec 0 min 4 sec 2023-03-02T18:09:27,313 2.46 MB 9.77 % 5.84 MB/sec 0 min 4 sec 2023-03-02T18:09:27,314 2.47 MB 9.81 % 5.84 MB/sec 0 min 4 sec 2023-03-02T18:09:27,315 2.48 MB 9.84 % 5.85 MB/sec 0 min 4 sec 2023-03-02T18:09:27,316 2.48 MB 9.87 % 5.84 MB/sec 0 min 4 sec 2023-03-02T18:09:27,317 2.49 MB 9.90 % 5.86 MB/sec 0 min 4 sec 2023-03-02T18:09:27,318 2.50 MB 9.93 % 5.85 MB/sec 0 min 4 sec 2023-03-02T18:09:27,320 2.51 MB 9.96 % 5.86 MB/sec 0 min 4 sec 2023-03-02T18:09:27,321 2.52 MB 9.99 % 5.85 MB/sec 0 min 4 sec 2023-03-02T18:09:27,322 2.52 MB 10.02 % 5.86 MB/sec 0 min 4 sec 2023-03-02T18:09:27,323 2.53 MB 10.05 % 5.86 MB/sec 0 min 4 sec 2023-03-02T18:09:27,324 2.54 MB 10.08 % 5.87 MB/sec 0 min 4 sec 2023-03-02T18:09:27,325 2.55 MB 10.12 % 5.86 MB/sec 0 min 4 sec 2023-03-02T18:09:27,327 2.55 MB 10.15 % 5.87 MB/sec 0 min 4 sec 2023-03-02T18:09:27,328 2.56 MB 10.18 % 5.86 MB/sec 0 min 4 sec 2023-03-02T18:09:27,329 2.57 MB 10.21 % 5.88 MB/sec 0 min 4 sec 2023-03-02T18:09:27,330 2.58 MB 10.24 % 5.87 MB/sec 0 min 4 sec 2023-03-02T18:09:27,332 2.59 MB 10.27 % 5.88 MB/sec 0 min 4 sec 2023-03-02T18:09:27,332 2.59 MB 10.30 % 5.88 MB/sec 0 min 4 sec 2023-03-02T18:09:27,334 2.60 MB 10.33 % 5.89 MB/sec 0 min 4 sec 2023-03-02T18:09:27,334 2.61 MB 10.36 % 5.88 MB/sec 0 min 4 sec 2023-03-02T18:09:27,336 2.62 MB 10.39 % 5.89 MB/sec 0 min 4 sec 2023-03-02T18:09:27,337 2.62 MB 10.43 % 5.88 MB/sec 0 min 4 sec 2023-03-02T18:09:27,339 2.63 MB 10.46 % 5.90 MB/sec 0 min 4 sec 2023-03-02T18:09:27,339 2.64 MB 10.49 % 5.89 MB/sec 0 min 4 sec 2023-03-02T18:09:27,341 2.65 MB 10.52 % 5.90 MB/sec 0 min 4 sec 2023-03-02T18:09:27,342 2.66 MB 10.55 % 5.89 MB/sec 0 min 4 sec 2023-03-02T18:09:27,343 2.66 MB 10.58 % 5.90 MB/sec 0 min 4 sec 2023-03-02T18:09:27,344 2.67 MB 10.61 % 5.89 MB/sec 0 min 4 sec 2023-03-02T18:09:27,346 2.68 MB 10.64 % 5.90 MB/sec 0 min 4 sec 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6.13 MB/sec 0 min 3 sec 2023-03-02T18:09:27,509 3.78 MB 15.02 % 6.12 MB/sec 0 min 3 sec 2023-03-02T18:09:27,511 3.79 MB 15.05 % 6.13 MB/sec 0 min 3 sec 2023-03-02T18:09:27,511 3.80 MB 15.08 % 6.12 MB/sec 0 min 3 sec 2023-03-02T18:09:27,513 3.80 MB 15.11 % 6.13 MB/sec 0 min 3 sec 2023-03-02T18:09:27,513 3.81 MB 15.14 % 6.12 MB/sec 0 min 3 sec 2023-03-02T18:09:27,515 3.82 MB 15.17 % 6.13 MB/sec 0 min 3 sec 2023-03-02T18:09:27,516 3.83 MB 15.20 % 6.12 MB/sec 0 min 3 sec 2023-03-02T18:09:27,517 3.84 MB 15.24 % 6.13 MB/sec 0 min 3 sec 2023-03-02T18:09:27,518 3.84 MB 15.27 % 6.13 MB/sec 0 min 3 sec 2023-03-02T18:09:27,520 3.85 MB 15.30 % 6.14 MB/sec 0 min 3 sec 2023-03-02T18:09:27,520 3.86 MB 15.33 % 6.13 MB/sec 0 min 3 sec 2023-03-02T18:09:27,522 3.87 MB 15.36 % 6.14 MB/sec 0 min 3 sec 2023-03-02T18:09:27,523 3.88 MB 15.39 % 6.13 MB/sec 0 min 3 sec 2023-03-02T18:09:27,525 3.88 MB 15.42 % 6.14 MB/sec 0 min 3 sec 2023-03-02T18:09:27,525 3.89 MB 15.45 % 6.13 MB/sec 0 min 3 sec 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6.15 MB/sec 0 min 3 sec 2023-03-02T18:09:27,546 4.02 MB 15.98 % 6.16 MB/sec 0 min 3 sec 2023-03-02T18:09:27,546 4.03 MB 16.01 % 6.15 MB/sec 0 min 3 sec 2023-03-02T18:09:27,548 4.04 MB 16.04 % 6.16 MB/sec 0 min 3 sec 2023-03-02T18:09:27,548 4.05 MB 16.07 % 6.15 MB/sec 0 min 3 sec 2023-03-02T18:09:27,550 4.05 MB 16.10 % 6.16 MB/sec 0 min 3 sec 2023-03-02T18:09:27,550 4.06 MB 16.14 % 6.16 MB/sec 0 min 3 sec 2023-03-02T18:09:27,552 4.07 MB 16.17 % 6.17 MB/sec 0 min 3 sec 2023-03-02T18:09:27,553 4.08 MB 16.20 % 6.16 MB/sec 0 min 3 sec 2023-03-02T18:09:27,555 4.09 MB 16.23 % 6.17 MB/sec 0 min 3 sec 2023-03-02T18:09:27,555 4.09 MB 16.26 % 6.16 MB/sec 0 min 3 sec 2023-03-02T18:09:27,557 4.10 MB 16.29 % 6.17 MB/sec 0 min 3 sec 2023-03-02T18:09:27,558 4.11 MB 16.32 % 6.16 MB/sec 0 min 3 sec 2023-03-02T18:09:27,559 4.12 MB 16.35 % 6.17 MB/sec 0 min 3 sec 2023-03-02T18:09:27,560 4.12 MB 16.38 % 6.16 MB/sec 0 min 3 sec 2023-03-02T18:09:27,562 4.13 MB 16.41 % 6.17 MB/sec 0 min 3 sec 2023-03-02T18:09:27,562 4.14 MB 16.45 % 6.16 MB/sec 0 min 3 sec 2023-03-02T18:09:27,564 4.15 MB 16.48 % 6.17 MB/sec 0 min 3 sec 2023-03-02T18:09:27,565 4.16 MB 16.51 % 6.16 MB/sec 0 min 3 sec 2023-03-02T18:09:27,567 4.16 MB 16.54 % 6.17 MB/sec 0 min 3 sec 2023-03-02T18:09:27,567 4.17 MB 16.57 % 6.17 MB/sec 0 min 3 sec 2023-03-02T18:09:27,569 4.18 MB 16.60 % 6.17 MB/sec 0 min 3 sec 2023-03-02T18:09:27,569 4.19 MB 16.63 % 6.17 MB/sec 0 min 3 sec 2023-03-02T18:09:27,571 4.20 MB 16.66 % 6.18 MB/sec 0 min 3 sec 2023-03-02T18:09:27,572 4.20 MB 16.69 % 6.17 MB/sec 0 min 3 sec 2023-03-02T18:09:27,574 4.21 MB 16.72 % 6.18 MB/sec 0 min 3 sec 2023-03-02T18:09:27,574 4.22 MB 16.76 % 6.17 MB/sec 0 min 3 sec 2023-03-02T18:09:27,576 4.23 MB 16.79 % 6.18 MB/sec 0 min 3 sec 2023-03-02T18:09:27,576 4.23 MB 16.82 % 6.17 MB/sec 0 min 3 sec 2023-03-02T18:09:27,579 4.24 MB 16.85 % 6.18 MB/sec 0 min 3 sec 2023-03-02T18:09:27,579 4.25 MB 16.88 % 6.17 MB/sec 0 min 3 sec 2023-03-02T18:09:27,581 4.26 MB 16.91 % 6.18 MB/sec 0 min 3 sec 2023-03-02T18:09:27,581 4.27 MB 16.94 % 6.17 MB/sec 0 min 3 sec 2023-03-02T18:09:27,583 4.27 MB 16.97 % 6.18 MB/sec 0 min 3 sec 2023-03-02T18:09:27,584 4.28 MB 17.00 % 6.18 MB/sec 0 min 3 sec 2023-03-02T18:09:27,585 4.29 MB 17.03 % 6.19 MB/sec 0 min 3 sec 2023-03-02T18:09:27,586 4.30 MB 17.07 % 6.18 MB/sec 0 min 3 sec 2023-03-02T18:09:27,588 4.30 MB 17.10 % 6.19 MB/sec 0 min 3 sec 2023-03-02T18:09:27,588 4.31 MB 17.13 % 6.18 MB/sec 0 min 3 sec 2023-03-02T18:09:27,590 4.32 MB 17.16 % 6.19 MB/sec 0 min 3 sec 2023-03-02T18:09:27,590 4.33 MB 17.19 % 6.18 MB/sec 0 min 3 sec 2023-03-02T18:09:27,592 4.34 MB 17.22 % 6.19 MB/sec 0 min 3 sec 2023-03-02T18:09:27,593 4.34 MB 17.25 % 6.18 MB/sec 0 min 3 sec 2023-03-02T18:09:27,595 4.35 MB 17.28 % 6.19 MB/sec 0 min 3 sec 2023-03-02T18:09:27,595 4.36 MB 17.31 % 6.19 MB/sec 0 min 3 sec 2023-03-02T18:09:27,597 4.37 MB 17.35 % 6.19 MB/sec 0 min 3 sec 2023-03-02T18:09:27,597 4.38 MB 17.38 % 6.19 MB/sec 0 min 3 sec 2023-03-02T18:09:27,599 4.38 MB 17.41 % 6.20 MB/sec 0 min 3 sec 2023-03-02T18:09:27,600 4.39 MB 17.44 % 6.19 MB/sec 0 min 3 sec 2023-03-02T18:09:27,602 4.40 MB 17.47 % 6.20 MB/sec 0 min 3 sec 2023-03-02T18:09:27,602 4.41 MB 17.50 % 6.19 MB/sec 0 min 3 sec 2023-03-02T18:09:27,604 4.41 MB 17.53 % 6.20 MB/sec 0 min 3 sec 2023-03-02T18:09:27,605 4.42 MB 17.56 % 6.19 MB/sec 0 min 3 sec 2023-03-02T18:09:27,607 4.43 MB 17.59 % 6.20 MB/sec 0 min 3 sec 2023-03-02T18:09:27,607 4.44 MB 17.62 % 6.19 MB/sec 0 min 3 sec 2023-03-02T18:09:27,609 4.45 MB 17.66 % 6.20 MB/sec 0 min 3 sec 2023-03-02T18:09:27,609 4.45 MB 17.69 % 6.20 MB/sec 0 min 3 sec 2023-03-02T18:09:27,611 4.46 MB 17.72 % 6.21 MB/sec 0 min 3 sec 2023-03-02T18:09:27,612 4.47 MB 17.75 % 6.20 MB/sec 0 min 3 sec 2023-03-02T18:09:27,613 4.48 MB 17.78 % 6.21 MB/sec 0 min 3 sec 2023-03-02T18:09:27,614 4.48 MB 17.81 % 6.20 MB/sec 0 min 3 sec 2023-03-02T18:09:27,616 4.49 MB 17.84 % 6.21 MB/sec 0 min 3 sec 2023-03-02T18:09:27,616 4.50 MB 17.87 % 6.20 MB/sec 0 min 3 sec 2023-03-02T18:09:27,618 4.51 MB 17.90 % 6.21 MB/sec 0 min 3 sec 2023-03-02T18:09:27,618 4.52 MB 17.93 % 6.21 MB/sec 0 min 3 sec 2023-03-02T18:09:27,620 4.52 MB 17.97 % 6.21 MB/sec 0 min 3 sec 2023-03-02T18:09:27,621 4.53 MB 18.00 % 6.21 MB/sec 0 min 3 sec 2023-03-02T18:09:27,622 4.54 MB 18.03 % 6.21 MB/sec 0 min 3 sec 2023-03-02T18:09:27,623 4.55 MB 18.06 % 6.21 MB/sec 0 min 3 sec 2023-03-02T18:09:27,625 4.55 MB 18.09 % 6.22 MB/sec 0 min 3 sec 2023-03-02T18:09:27,625 4.56 MB 18.12 % 6.21 MB/sec 0 min 3 sec 2023-03-02T18:09:27,627 4.57 MB 18.15 % 6.22 MB/sec 0 min 3 sec 2023-03-02T18:09:27,627 4.58 MB 18.18 % 6.21 MB/sec 0 min 3 sec 2023-03-02T18:09:27,629 4.59 MB 18.21 % 6.22 MB/sec 0 min 3 sec 2023-03-02T18:09:27,630 4.59 MB 18.25 % 6.21 MB/sec 0 min 3 sec 2023-03-02T18:09:27,631 4.60 MB 18.28 % 6.22 MB/sec 0 min 3 sec 2023-03-02T18:09:27,632 4.61 MB 18.31 % 6.22 MB/sec 0 min 3 sec 2023-03-02T18:09:27,633 4.62 MB 18.34 % 6.23 MB/sec 0 min 3 sec 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6.24 MB/sec 0 min 3 sec 2023-03-02T18:09:27,653 4.75 MB 18.87 % 6.23 MB/sec 0 min 3 sec 2023-03-02T18:09:27,655 4.76 MB 18.90 % 6.24 MB/sec 0 min 3 sec 2023-03-02T18:09:27,655 4.77 MB 18.93 % 6.23 MB/sec 0 min 3 sec 2023-03-02T18:09:27,657 4.77 MB 18.96 % 6.24 MB/sec 0 min 3 sec 2023-03-02T18:09:27,657 4.78 MB 18.99 % 6.24 MB/sec 0 min 3 sec 2023-03-02T18:09:27,659 4.79 MB 19.02 % 6.24 MB/sec 0 min 3 sec 2023-03-02T18:09:27,660 4.80 MB 19.05 % 6.24 MB/sec 0 min 3 sec 2023-03-02T18:09:27,662 4.80 MB 19.08 % 6.24 MB/sec 0 min 3 sec 2023-03-02T18:09:27,662 4.81 MB 19.11 % 6.24 MB/sec 0 min 3 sec 2023-03-02T18:09:27,664 4.82 MB 19.14 % 6.24 MB/sec 0 min 3 sec 2023-03-02T18:09:27,665 4.83 MB 19.18 % 6.24 MB/sec 0 min 3 sec 2023-03-02T18:09:27,666 4.84 MB 19.21 % 6.24 MB/sec 0 min 3 sec 2023-03-02T18:09:27,667 4.84 MB 19.24 % 6.24 MB/sec 0 min 3 sec 2023-03-02T18:09:27,669 4.85 MB 19.27 % 6.25 MB/sec 0 min 3 sec 2023-03-02T18:09:27,669 4.86 MB 19.30 % 6.24 MB/sec 0 min 3 sec 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2023-03-02T18:09:28,190 8.74 MB 34.72 % 6.73 MB/sec 0 min 2 sec 2023-03-02T18:09:28,190 8.75 MB 34.75 % 6.73 MB/sec 0 min 2 sec 2023-03-02T18:09:28,192 8.76 MB 34.78 % 6.74 MB/sec 0 min 2 sec 2023-03-02T18:09:28,192 8.77 MB 34.81 % 6.73 MB/sec 0 min 2 sec 2023-03-02T18:09:28,194 8.77 MB 34.85 % 6.74 MB/sec 0 min 2 sec 2023-03-02T18:09:28,194 8.78 MB 34.88 % 6.74 MB/sec 0 min 2 sec 2023-03-02T18:09:28,196 8.79 MB 34.91 % 6.74 MB/sec 0 min 2 sec 2023-03-02T18:09:28,196 8.80 MB 34.94 % 6.74 MB/sec 0 min 2 sec 2023-03-02T18:09:28,198 8.80 MB 34.97 % 6.74 MB/sec 0 min 2 sec 2023-03-02T18:09:28,198 8.81 MB 35.00 % 6.74 MB/sec 0 min 2 sec 2023-03-02T18:09:28,200 8.82 MB 35.03 % 6.74 MB/sec 0 min 2 sec 2023-03-02T18:09:28,200 8.83 MB 35.06 % 6.74 MB/sec 0 min 2 sec 2023-03-02T18:09:28,202 8.84 MB 35.09 % 6.74 MB/sec 0 min 2 sec 2023-03-02T18:09:28,202 8.84 MB 35.12 % 6.74 MB/sec 0 min 2 sec 2023-03-02T18:09:28,204 8.85 MB 35.16 % 6.75 MB/sec 0 min 2 sec 2023-03-02T18:09:28,204 8.86 MB 35.19 % 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6.79 MB/sec 0 min 2 sec 2023-03-02T18:09:28,268 9.35 MB 37.14 % 6.80 MB/sec 0 min 2 sec 2023-03-02T18:09:28,268 9.36 MB 37.17 % 6.79 MB/sec 0 min 2 sec 2023-03-02T18:09:28,270 9.37 MB 37.20 % 6.80 MB/sec 0 min 2 sec 2023-03-02T18:09:28,270 9.38 MB 37.23 % 6.80 MB/sec 0 min 2 sec 2023-03-02T18:09:28,272 9.38 MB 37.27 % 6.80 MB/sec 0 min 2 sec 2023-03-02T18:09:28,272 9.39 MB 37.30 % 6.80 MB/sec 0 min 2 sec 2023-03-02T18:09:28,274 9.40 MB 37.33 % 6.80 MB/sec 0 min 2 sec 2023-03-02T18:09:28,274 9.41 MB 37.36 % 6.80 MB/sec 0 min 2 sec 2023-03-02T18:09:28,276 9.41 MB 37.39 % 6.80 MB/sec 0 min 2 sec 2023-03-02T18:09:28,276 9.42 MB 37.42 % 6.80 MB/sec 0 min 2 sec 2023-03-02T18:09:28,278 9.43 MB 37.45 % 6.80 MB/sec 0 min 2 sec 2023-03-02T18:09:28,278 9.44 MB 37.48 % 6.80 MB/sec 0 min 2 sec 2023-03-02T18:09:28,280 9.45 MB 37.51 % 6.81 MB/sec 0 min 2 sec 2023-03-02T18:09:28,280 9.45 MB 37.55 % 6.80 MB/sec 0 min 2 sec 2023-03-02T18:09:28,282 9.46 MB 37.58 % 6.81 MB/sec 0 min 2 sec 2023-03-02T18:09:28,282 9.47 MB 37.61 % 6.80 MB/sec 0 min 2 sec 2023-03-02T18:09:28,284 9.48 MB 37.64 % 6.81 MB/sec 0 min 2 sec 2023-03-02T18:09:28,284 9.48 MB 37.67 % 6.81 MB/sec 0 min 2 sec 2023-03-02T18:09:28,286 9.49 MB 37.70 % 6.81 MB/sec 0 min 2 sec 2023-03-02T18:09:28,286 9.50 MB 37.73 % 6.81 MB/sec 0 min 2 sec 2023-03-02T18:09:28,288 9.51 MB 37.76 % 6.81 MB/sec 0 min 2 sec 2023-03-02T18:09:28,288 9.52 MB 37.79 % 6.81 MB/sec 0 min 2 sec 2023-03-02T18:09:28,290 9.52 MB 37.82 % 6.81 MB/sec 0 min 2 sec 2023-03-02T18:09:28,290 9.53 MB 37.86 % 6.81 MB/sec 0 min 2 sec 2023-03-02T18:09:28,292 9.54 MB 37.89 % 6.81 MB/sec 0 min 2 sec 2023-03-02T18:09:28,292 9.55 MB 37.92 % 6.81 MB/sec 0 min 2 sec 2023-03-02T18:09:28,294 9.55 MB 37.95 % 6.82 MB/sec 0 min 2 sec 2023-03-02T18:09:28,294 9.56 MB 37.98 % 6.81 MB/sec 0 min 2 sec 2023-03-02T18:09:28,296 9.57 MB 38.01 % 6.82 MB/sec 0 min 2 sec 2023-03-02T18:09:28,296 9.58 MB 38.04 % 6.81 MB/sec 0 min 2 sec 2023-03-02T18:09:28,298 9.59 MB 38.07 % 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MB 40.00 % 6.73 MB/sec 0 min 2 sec 2023-03-02T18:09:28,389 10.08 MB 40.03 % 6.73 MB/sec 0 min 2 sec 2023-03-02T18:09:28,391 10.09 MB 40.06 % 6.73 MB/sec 0 min 2 sec 2023-03-02T18:09:28,392 10.09 MB 40.09 % 6.72 MB/sec 0 min 2 sec 2023-03-02T18:09:28,394 10.10 MB 40.12 % 6.72 MB/sec 0 min 2 sec 2023-03-02T18:09:28,395 10.11 MB 40.15 % 6.72 MB/sec 0 min 2 sec 2023-03-02T18:09:28,397 10.12 MB 40.18 % 6.72 MB/sec 0 min 2 sec 2023-03-02T18:09:28,398 10.12 MB 40.21 % 6.72 MB/sec 0 min 2 sec 2023-03-02T18:09:28,401 10.13 MB 40.24 % 6.72 MB/sec 0 min 2 sec 2023-03-02T18:09:28,401 10.14 MB 40.28 % 6.71 MB/sec 0 min 2 sec 2023-03-02T18:09:28,404 10.15 MB 40.31 % 6.72 MB/sec 0 min 2 sec 2023-03-02T18:09:28,405 10.16 MB 40.34 % 6.71 MB/sec 0 min 2 sec 2023-03-02T18:09:28,407 10.16 MB 40.37 % 6.71 MB/sec 0 min 2 sec 2023-03-02T18:09:28,408 10.17 MB 40.40 % 6.71 MB/sec 0 min 2 sec 2023-03-02T18:09:28,410 10.18 MB 40.43 % 6.71 MB/sec 0 min 2 sec 2023-03-02T18:09:28,411 10.19 MB 40.46 % 6.70 MB/sec 0 min 2 sec 2023-03-02T18:09:28,413 10.20 MB 40.49 % 6.70 MB/sec 0 min 2 sec 2023-03-02T18:09:28,414 10.20 MB 40.52 % 6.70 MB/sec 0 min 2 sec 2023-03-02T18:09:28,416 10.21 MB 40.56 % 6.70 MB/sec 0 min 2 sec 2023-03-02T18:09:28,417 10.22 MB 40.59 % 6.70 MB/sec 0 min 2 sec 2023-03-02T18:09:28,419 10.23 MB 40.62 % 6.70 MB/sec 0 min 2 sec 2023-03-02T18:09:28,420 10.23 MB 40.65 % 6.69 MB/sec 0 min 2 sec 2023-03-02T18:09:28,422 10.24 MB 40.68 % 6.70 MB/sec 0 min 2 sec 2023-03-02T18:09:28,423 10.25 MB 40.71 % 6.69 MB/sec 0 min 2 sec 2023-03-02T18:09:28,425 10.26 MB 40.74 % 6.69 MB/sec 0 min 2 sec 2023-03-02T18:09:28,426 10.27 MB 40.77 % 6.69 MB/sec 0 min 2 sec 2023-03-02T18:09:28,428 10.27 MB 40.80 % 6.69 MB/sec 0 min 2 sec 2023-03-02T18:09:28,429 10.28 MB 40.83 % 6.68 MB/sec 0 min 2 sec 2023-03-02T18:09:28,431 10.29 MB 40.87 % 6.69 MB/sec 0 min 2 sec 2023-03-02T18:09:28,432 10.30 MB 40.90 % 6.68 MB/sec 0 min 2 sec 2023-03-02T18:09:28,434 10.30 MB 40.93 % 6.68 MB/sec 0 min 2 sec 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2023-03-02T18:09:28,787 12.11 MB 48.10 % 6.39 MB/sec 0 min 2 sec 2023-03-02T18:09:28,789 12.12 MB 48.13 % 6.39 MB/sec 0 min 2 sec 2023-03-02T18:09:28,790 12.12 MB 48.16 % 6.39 MB/sec 0 min 2 sec 2023-03-02T18:09:28,792 12.13 MB 48.19 % 6.39 MB/sec 0 min 2 sec 2023-03-02T18:09:28,793 12.14 MB 48.22 % 6.38 MB/sec 0 min 2 sec 2023-03-02T18:09:28,795 12.15 MB 48.25 % 6.38 MB/sec 0 min 2 sec 2023-03-02T18:09:28,796 12.16 MB 48.28 % 6.38 MB/sec 0 min 2 sec 2023-03-02T18:09:28,798 12.16 MB 48.31 % 6.38 MB/sec 0 min 2 sec 2023-03-02T18:09:28,799 12.17 MB 48.34 % 6.38 MB/sec 0 min 2 sec 2023-03-02T18:09:28,802 12.18 MB 48.37 % 6.38 MB/sec 0 min 2 sec 2023-03-02T18:09:28,803 12.19 MB 48.41 % 6.38 MB/sec 0 min 2 sec 2023-03-02T18:09:28,805 12.20 MB 48.44 % 6.38 MB/sec 0 min 2 sec 2023-03-02T18:09:28,806 12.20 MB 48.47 % 6.37 MB/sec 0 min 2 sec 2023-03-02T18:09:28,808 12.21 MB 48.50 % 6.37 MB/sec 0 min 2 sec 2023-03-02T18:09:28,809 12.22 MB 48.53 % 6.37 MB/sec 0 min 2 sec 2023-03-02T18:09:28,811 12.23 MB 48.56 % 6.37 MB/sec 0 min 2 sec 2023-03-02T18:09:28,812 12.23 MB 48.59 % 6.37 MB/sec 0 min 2 sec 2023-03-02T18:09:28,814 12.24 MB 48.62 % 6.37 MB/sec 0 min 2 sec 2023-03-02T18:09:28,815 12.25 MB 48.65 % 6.37 MB/sec 0 min 2 sec 2023-03-02T18:09:28,817 12.26 MB 48.68 % 6.37 MB/sec 0 min 2 sec 2023-03-02T18:09:28,818 12.27 MB 48.72 % 6.36 MB/sec 0 min 2 sec 2023-03-02T18:09:28,820 12.27 MB 48.75 % 6.37 MB/sec 0 min 2 sec 2023-03-02T18:09:28,821 12.28 MB 48.78 % 6.36 MB/sec 0 min 2 sec 2023-03-02T18:09:28,823 12.29 MB 48.81 % 6.36 MB/sec 0 min 2 sec 2023-03-02T18:09:28,824 12.30 MB 48.84 % 6.36 MB/sec 0 min 2 sec 2023-03-02T18:09:28,827 12.30 MB 48.87 % 6.36 MB/sec 0 min 2 sec 2023-03-02T18:09:28,827 12.31 MB 48.90 % 6.36 MB/sec 0 min 2 sec 2023-03-02T18:09:28,830 12.32 MB 48.93 % 6.36 MB/sec 0 min 2 sec 2023-03-02T18:09:28,830 12.33 MB 48.96 % 6.36 MB/sec 0 min 2 sec 2023-03-02T18:09:28,833 12.34 MB 49.00 % 6.36 MB/sec 0 min 2 sec 2023-03-02T18:09:28,833 12.34 MB 49.03 % 6.35 MB/sec 0 min 2 sec 2023-03-02T18:09:28,836 12.35 MB 49.06 % 6.36 MB/sec 0 min 2 sec 2023-03-02T18:09:28,836 12.36 MB 49.09 % 6.35 MB/sec 0 min 2 sec 2023-03-02T18:09:28,839 12.37 MB 49.12 % 6.35 MB/sec 0 min 2 sec 2023-03-02T18:09:28,840 12.38 MB 49.15 % 6.35 MB/sec 0 min 2 sec 2023-03-02T18:09:28,842 12.38 MB 49.18 % 6.35 MB/sec 0 min 2 sec 2023-03-02T18:09:28,843 12.39 MB 49.21 % 6.35 MB/sec 0 min 2 sec 2023-03-02T18:09:28,845 12.40 MB 49.24 % 6.35 MB/sec 0 min 2 sec 2023-03-02T18:09:28,846 12.41 MB 49.27 % 6.35 MB/sec 0 min 2 sec 2023-03-02T18:09:28,848 12.41 MB 49.31 % 6.35 MB/sec 0 min 2 sec 2023-03-02T18:09:28,849 12.42 MB 49.34 % 6.34 MB/sec 0 min 2 sec 2023-03-02T18:09:28,851 12.43 MB 49.37 % 6.35 MB/sec 0 min 2 sec 2023-03-02T18:09:28,852 12.44 MB 49.40 % 6.34 MB/sec 0 min 2 sec 2023-03-02T18:09:28,854 12.45 MB 49.43 % 6.34 MB/sec 0 min 2 sec 2023-03-02T18:09:28,855 12.45 MB 49.46 % 6.34 MB/sec 0 min 2 sec 2023-03-02T18:09:28,857 12.46 MB 49.49 % 6.34 MB/sec 0 min 2 sec 2023-03-02T18:09:28,858 12.47 MB 49.52 % 6.34 MB/sec 0 min 2 sec 2023-03-02T18:09:28,860 12.48 MB 49.55 % 6.34 MB/sec 0 min 2 sec 2023-03-02T18:09:28,861 12.48 MB 49.58 % 6.34 MB/sec 0 min 2 sec 2023-03-02T18:09:28,864 12.49 MB 49.62 % 6.34 MB/sec 0 min 2 sec 2023-03-02T18:09:28,864 12.50 MB 49.65 % 6.33 MB/sec 0 min 2 sec 2023-03-02T18:09:28,867 12.51 MB 49.68 % 6.34 MB/sec 0 min 2 sec 2023-03-02T18:09:28,867 12.52 MB 49.71 % 6.33 MB/sec 0 min 2 sec 2023-03-02T18:09:28,870 12.52 MB 49.74 % 6.33 MB/sec 0 min 2 sec 2023-03-02T18:09:28,871 12.53 MB 49.77 % 6.33 MB/sec 0 min 2 sec 2023-03-02T18:09:28,873 12.54 MB 49.80 % 6.33 MB/sec 0 min 2 sec 2023-03-02T18:09:28,874 12.55 MB 49.83 % 6.33 MB/sec 0 min 2 sec 2023-03-02T18:09:28,876 12.55 MB 49.86 % 6.33 MB/sec 0 min 2 sec 2023-03-02T18:09:28,877 12.56 MB 49.89 % 6.33 MB/sec 0 min 2 sec 2023-03-02T18:09:28,879 12.57 MB 49.93 % 6.33 MB/sec 0 min 2 sec 2023-03-02T18:09:28,880 12.58 MB 49.96 % 6.32 MB/sec 0 min 2 sec 2023-03-02T18:09:28,882 12.59 MB 49.99 % 6.33 MB/sec 0 min 2 sec 2023-03-02T18:09:28,883 12.59 MB 50.02 % 6.32 MB/sec 0 min 2 sec 2023-03-02T18:09:28,885 12.60 MB 50.05 % 6.32 MB/sec 0 min 2 sec 2023-03-02T18:09:28,886 12.61 MB 50.08 % 6.32 MB/sec 0 min 2 sec 2023-03-02T18:09:28,888 12.62 MB 50.11 % 6.32 MB/sec 0 min 2 sec 2023-03-02T18:09:28,889 12.62 MB 50.14 % 6.32 MB/sec 0 min 2 sec 2023-03-02T18:09:28,891 12.63 MB 50.17 % 6.32 MB/sec 0 min 2 sec 2023-03-02T18:09:28,892 12.64 MB 50.21 % 6.32 MB/sec 0 min 2 sec 2023-03-02T18:09:28,895 12.65 MB 50.24 % 6.32 MB/sec 0 min 2 sec 2023-03-02T18:09:28,895 12.66 MB 50.27 % 6.31 MB/sec 0 min 2 sec 2023-03-02T18:09:28,898 12.66 MB 50.30 % 6.32 MB/sec 0 min 2 sec 2023-03-02T18:09:28,898 12.67 MB 50.33 % 6.31 MB/sec 0 min 2 sec 2023-03-02T18:09:28,901 12.68 MB 50.36 % 6.31 MB/sec 0 min 2 sec 2023-03-02T18:09:28,901 12.69 MB 50.39 % 6.31 MB/sec 0 min 2 sec 2023-03-02T18:09:28,904 12.70 MB 50.42 % 6.31 MB/sec 0 min 2 sec 2023-03-02T18:09:28,905 12.70 MB 50.45 % 6.31 MB/sec 0 min 2 sec 2023-03-02T18:09:28,907 12.71 MB 50.48 % 6.31 MB/sec 0 min 2 sec 2023-03-02T18:09:28,908 12.72 MB 50.52 % 6.31 MB/sec 0 min 2 sec 2023-03-02T18:09:28,910 12.73 MB 50.55 % 6.31 MB/sec 0 min 2 sec 2023-03-02T18:09:28,911 12.73 MB 50.58 % 6.30 MB/sec 0 min 2 sec 2023-03-02T18:09:28,913 12.74 MB 50.61 % 6.31 MB/sec 0 min 2 sec 2023-03-02T18:09:28,914 12.75 MB 50.64 % 6.30 MB/sec 0 min 2 sec 2023-03-02T18:09:28,916 12.76 MB 50.67 % 6.30 MB/sec 0 min 2 sec 2023-03-02T18:09:28,917 12.77 MB 50.70 % 6.30 MB/sec 0 min 2 sec 2023-03-02T18:09:28,919 12.77 MB 50.73 % 6.30 MB/sec 0 min 2 sec 2023-03-02T18:09:28,920 12.78 MB 50.76 % 6.30 MB/sec 0 min 2 sec 2023-03-02T18:09:28,922 12.79 MB 50.79 % 6.30 MB/sec 0 min 2 sec 2023-03-02T18:09:28,923 12.80 MB 50.83 % 6.30 MB/sec 0 min 2 sec 2023-03-02T18:09:28,925 12.80 MB 50.86 % 6.30 MB/sec 0 min 2 sec 2023-03-02T18:09:28,926 12.81 MB 50.89 % 6.30 MB/sec 0 min 2 sec 2023-03-02T18:09:28,928 12.82 MB 50.92 % 6.30 MB/sec 0 min 2 sec 2023-03-02T18:09:28,929 12.83 MB 50.95 % 6.29 MB/sec 0 min 2 sec 2023-03-02T18:09:28,931 12.84 MB 50.98 % 6.30 MB/sec 0 min 2 sec 2023-03-02T18:09:28,932 12.84 MB 51.01 % 6.29 MB/sec 0 min 2 sec 2023-03-02T18:09:28,934 12.85 MB 51.04 % 6.29 MB/sec 0 min 2 sec 2023-03-02T18:09:28,935 12.86 MB 51.07 % 6.29 MB/sec 0 min 2 sec 2023-03-02T18:09:28,938 12.87 MB 51.10 % 6.29 MB/sec 0 min 2 sec 2023-03-02T18:09:28,938 12.88 MB 51.14 % 6.29 MB/sec 0 min 2 sec 2023-03-02T18:09:28,941 12.88 MB 51.17 % 6.29 MB/sec 0 min 2 sec 2023-03-02T18:09:28,942 12.89 MB 51.20 % 6.29 MB/sec 0 min 2 sec 2023-03-02T18:09:28,944 12.90 MB 51.23 % 6.29 MB/sec 0 min 2 sec 2023-03-02T18:09:28,945 12.91 MB 51.26 % 6.28 MB/sec 0 min 2 sec 2023-03-02T18:09:28,947 12.91 MB 51.29 % 6.29 MB/sec 0 min 2 sec 2023-03-02T18:09:28,948 12.92 MB 51.32 % 6.28 MB/sec 0 min 2 sec 2023-03-02T18:09:28,950 12.93 MB 51.35 % 6.28 MB/sec 0 min 2 sec 2023-03-02T18:09:28,951 12.94 MB 51.38 % 6.28 MB/sec 0 min 2 sec 2023-03-02T18:09:28,953 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25.16 MB 99.94 % 5.66 MB/sec 0 min 0 sec 2023-03-02T18:09:31,338 25.17 MB 99.98 % 5.66 MB/sec 0 min 0 sec 2023-03-02T18:09:32,001 25.18 MB 100.01 % 5.66 MB/sec 0 min -0 sec 2023-03-02T18:09:38,722 WARNING: Unable to install bowtie2. Please install bowtie2. 2023-03-02T18:09:38,755 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-03-02T18:09:38,764 creating build/bdist.linux-armv7l/wheel/humann-3.6.1.dist-info/WHEEL 2023-03-02T18:09:38,770 creating '/tmp/pip-wheel-rg566ne0/humann-3.6.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-03-02T18:09:38,776 adding 'humann/__init__.py' 2023-03-02T18:09:38,779 adding 'humann/check.py' 2023-03-02T18:09:38,787 adding 'humann/config.py' 2023-03-02T18:09:38,791 adding 'humann/humann.cfg' 2023-03-02T18:09:38,804 adding 'humann/humann.py' 2023-03-02T18:09:38,819 adding 'humann/store.py' 2023-03-02T18:09:38,833 adding 'humann/utilities.py' 2023-03-02T18:09:39,755 adding 'humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v201901_v31.ffn.gz' 2023-03-02T18:09:41,191 adding 'humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v201901_v31.ffn.gz' 2023-03-02T18:09:41,332 adding 'humann/data/misc/KeggOrgId2OrgNameTable.txt' 2023-03-02T18:09:41,338 adding 'humann/data/misc/README.txt' 2023-03-02T18:09:41,471 adding 'humann/data/misc/map_go_name.txt.gz' 2023-03-02T18:09:41,522 adding 'humann/data/misc/map_kegg-mdl_name.txt.gz' 2023-03-02T18:09:41,529 adding 'humann/data/misc/map_kegg-pwy_name.txt.gz' 2023-03-02T18:09:41,580 adding 'humann/data/misc/map_ko_name.txt.gz' 2023-03-02T18:09:41,600 adding 'humann/data/misc/map_level4ec_name.txt.gz' 2023-03-02T18:09:41,611 adding 'humann/data/misc/map_metacyc-pwy_name.txt.gz' 2023-03-02T18:09:41,654 adding 'humann/data/misc/map_metacyc-rxn_name.txt.gz' 2023-03-02T18:09:41,712 adding 'humann/data/misc/map_pfam_name.txt.gz' 2023-03-02T18:09:41,720 adding 'humann/data/misc/map_transporter_uniref50.txt.gz' 2023-03-02T18:09:51,274 adding 'humann/data/misc/map_uniref50_name.txt.bz2' 2023-03-02T18:09:52,376 adding 'humann/data/misc/mpa_vJan21_CHOCOPhlAnSGB_202103.tsv' 2023-03-02T18:09:52,485 adding 'humann/data/pathways/metacyc_pathways' 2023-03-02T18:09:52,584 adding 'humann/data/pathways/metacyc_pathways_structured' 2023-03-02T18:09:52,638 adding 'humann/data/pathways/metacyc_pathways_structured_filtered' 2023-03-02T18:09:52,702 adding 'humann/data/pathways/metacyc_pathways_structured_filtered_v24' 2023-03-02T18:09:52,818 adding 'humann/data/pathways/metacyc_pathways_structured_v24' 2023-03-02T18:09:52,886 adding 'humann/data/pathways/metacyc_pathways_to_organisms' 2023-03-02T18:10:09,575 adding 'humann/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2' 2023-03-02T18:10:12,015 adding 'humann/data/pathways/unipathway_pathways' 2023-03-02T18:10:12,344 adding 'humann/data/pathways/unipathway_uniprots.uniref.bz2' 2023-03-02T18:10:12,375 adding 'humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.dmnd' 2023-03-02T18:10:12,383 adding 'humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.fna' 2023-03-02T18:10:12,395 adding 'humann/quantify/MinPath12hmp.py' 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2023-03-02T18:10:28,109 Created wheel for humann: filename=humann-3.6.1-py3-none-any.whl size=105086774 sha256=0f9896a551ce4f393a6a7a201e9eea50ecf84324faf654ecb8da5956b572b399 2023-03-02T18:10:28,111 Stored in directory: /tmp/pip-ephem-wheel-cache-fnr5z2v_/wheels/91/d7/4c/81d02f6b1e51b52c4e8c39d85d1457a8b04c207487dc3778c7 2023-03-02T18:10:28,273 Successfully built humann 2023-03-02T18:10:35,249 Removed build tracker: '/tmp/pip-build-tracker-2air5f1n'