2023-03-03T15:50:52,228 Created temporary directory: /tmp/pip-ephem-wheel-cache-tq0u29z5 2023-03-03T15:50:52,233 Created temporary directory: /tmp/pip-build-tracker-t2ahah_o 2023-03-03T15:50:52,234 Initialized build tracking at /tmp/pip-build-tracker-t2ahah_o 2023-03-03T15:50:52,235 Created build tracker: /tmp/pip-build-tracker-t2ahah_o 2023-03-03T15:50:52,235 Entered build tracker: /tmp/pip-build-tracker-t2ahah_o 2023-03-03T15:50:52,236 Created temporary directory: /tmp/pip-wheel-y4bf7u05 2023-03-03T15:50:52,246 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-03-03T15:50:52,252 Created temporary directory: /tmp/pip-ephem-wheel-cache-hblf24bm 2023-03-03T15:50:52,312 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-03-03T15:50:52,319 2 location(s) to search for versions of polyply: 2023-03-03T15:50:52,319 * https://pypi.org/simple/polyply/ 2023-03-03T15:50:52,319 * https://www.piwheels.org/simple/polyply/ 2023-03-03T15:50:52,320 Fetching project page and analyzing links: https://pypi.org/simple/polyply/ 2023-03-03T15:50:52,321 Getting page https://pypi.org/simple/polyply/ 2023-03-03T15:50:52,325 Found index url https://pypi.org/simple 2023-03-03T15:50:52,594 Fetched page https://pypi.org/simple/polyply/ as application/vnd.pypi.simple.v1+json 2023-03-03T15:50:52,604 Found link https://files.pythonhosted.org/packages/27/d1/df68703f3e73c235e05823b59a5271657847bcccdd392075b1b1da4aa701/polyply-0.0.1.tar.gz (from https://pypi.org/simple/polyply/), version: 0.0.1 2023-03-03T15:50:52,605 Found link https://files.pythonhosted.org/packages/3f/35/d6ad36f78a4d71aac92d47e2831c4b3b339c6801c6dac6c3334a73a164c2/polyply-1.0.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.0.0 2023-03-03T15:50:52,606 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/61/c4/9393a7f82554a6c494f4c09776d48e4b83650cb2065930bcf63f0a04b3f2/polyply-1.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-03-03T15:50:52,606 Found link https://files.pythonhosted.org/packages/07/50/e2bedb4e92e97d38a55c48bb46ccdb71c31980679e7c62a756daf8ac0556/polyply-1.1.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.1.0 2023-03-03T15:50:52,607 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/b6/73/dae457005e36caeed515e0ddd6575f97b7b7ef0fa10ea58080b214f28bcb/polyply-1.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-03-03T15:50:52,608 Found link https://files.pythonhosted.org/packages/18/8e/2f4345b5870703a292c4a6935f371b133bf4296fb0c27277fc2b0e82b84a/polyply-1.2.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.2.0 2023-03-03T15:50:52,608 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/30/09/9a2dd9e4a932367c34dab96daa3358f525caf79281b782cc999c5d23e739/polyply-1.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-03-03T15:50:52,609 Found link https://files.pythonhosted.org/packages/44/2e/5a1f0589f61f2adf682da196f365578969be49e70bb5c462b804378574b8/polyply-1.2.1.tar.gz (from https://pypi.org/simple/polyply/), version: 1.2.1 2023-03-03T15:50:52,609 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/8b/5a/54052dbde396df09dd9d81aeb3c5e1b3873d7a81e387f4c45cc3e9a9aaf7/polyply-1.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-03-03T15:50:52,610 Found link https://files.pythonhosted.org/packages/4a/e1/68556867ea156a9deeceb21d415a7279beb91d865d2645f4820fa2ec18cf/polyply-1.3.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.3.0 2023-03-03T15:50:52,611 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/5b/42/27a59dec4af56f87c3f93920f6021fb31bb9885d2bc7b3e0f9efe883db01/polyply-1.3.1-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-03-03T15:50:52,612 Found link https://files.pythonhosted.org/packages/08/9b/e76f6659ecf63a5d1f11951ce10b248e4c13669aa8ca03fa9e766f21043b/polyply-1.3.1.tar.gz (from https://pypi.org/simple/polyply/), version: 1.3.1 2023-03-03T15:50:52,612 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/0f/cb/16b130082c96795791589934b925937530f9c909c544bf295069135003ca/polyply-1.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-03-03T15:50:52,613 Found link https://files.pythonhosted.org/packages/72/da/305294dabd9e3a6123018e8adabe7312ea474b0bbf45eb38c30ac96dcdd4/polyply-1.4.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.4.0 2023-03-03T15:50:52,613 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/f0/d9/5bf083840a5ca0f136f65a78f0cc725ef04c8c887c445d7814c97318b074/polyply-1.4.1-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-03-03T15:50:52,614 Found link https://files.pythonhosted.org/packages/ed/5f/c96ca2049310872af23fc84d0e686211d543915676f4f07fa6107956115f/polyply-1.4.1.tar.gz (from https://pypi.org/simple/polyply/), version: 1.4.1 2023-03-03T15:50:52,615 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/1b/a1/7549f3fd81c6358c73779c9c25c331d786ca17bda7269ed3d7e6654e4432/polyply-1.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-03-03T15:50:52,615 Found link https://files.pythonhosted.org/packages/6d/c1/a462e435cf2ddb6f05e485f7ed071591026c4c7f36b9f6866252e971aad7/polyply-1.5.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.5.0 2023-03-03T15:50:52,616 Fetching project page and analyzing links: https://www.piwheels.org/simple/polyply/ 2023-03-03T15:50:52,617 Getting page https://www.piwheels.org/simple/polyply/ 2023-03-03T15:50:52,619 Found index url https://www.piwheels.org/simple 2023-03-03T15:50:52,860 Fetched page https://www.piwheels.org/simple/polyply/ as text/html 2023-03-03T15:50:52,869 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.4.1-py2.py3-none-any.whl#sha256=90886eb9dd59380a2544798fec37eb01f98a13be0438dc8a2437fd98770abb8f (from https://www.piwheels.org/simple/polyply/) 2023-03-03T15:50:52,869 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.4.0-py2.py3-none-any.whl#sha256=ff46e65cc574f03b487c291c2f039559c7ae9915d832e65d1c2f5fa064c7c4f7 (from https://www.piwheels.org/simple/polyply/) 2023-03-03T15:50:52,870 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.3.1-py2.py3-none-any.whl#sha256=b0b3e19fb070225282deb01f6a7ecb6ee818e5ea427d82671643c3cdfe77d223 (from https://www.piwheels.org/simple/polyply/) 2023-03-03T15:50:52,870 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.3.0-py2.py3-none-any.whl#sha256=6ba24bf0e5816a4bbca620557f3da0c72223845d343dc2aef98b62c4d82dd3bb (from https://www.piwheels.org/simple/polyply/) 2023-03-03T15:50:52,871 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.2.1-py2.py3-none-any.whl#sha256=477478cf7f4d673782ed4e85fc97d32eaf0f5c1d5aa5af96d33ef496c1325007 (from https://www.piwheels.org/simple/polyply/) 2023-03-03T15:50:52,871 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.2.0-py2.py3-none-any.whl#sha256=672ceb8c03418bf79a0c31ab912adb5e0767df776a7d5d867a516ea0652e6362 (from https://www.piwheels.org/simple/polyply/) 2023-03-03T15:50:52,872 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.1.0-py2.py3-none-any.whl#sha256=756c436ae0321f2499390c6bc2e19a194bb59f9a49a3a4d78e37a364a0ddcb6f (from https://www.piwheels.org/simple/polyply/) 2023-03-03T15:50:52,873 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.0.0-py2.py3-none-any.whl#sha256=e44f0272c9e93e8e46bed997db28dd0205d709cebd40090747e2758358abdb8c (from https://www.piwheels.org/simple/polyply/) 2023-03-03T15:50:52,873 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-0.0.1-py2.py3-none-any.whl#sha256=165e22dfd4680f03fe8b6a49a8d3f38918049d263c57c0e82b5fddb4bc8b294b (from https://www.piwheels.org/simple/polyply/) 2023-03-03T15:50:52,874 Skipping link: not a file: https://www.piwheels.org/simple/polyply/ 2023-03-03T15:50:52,874 Skipping link: not a file: https://pypi.org/simple/polyply/ 2023-03-03T15:50:52,911 Given no hashes to check 1 links for project 'polyply': discarding no candidates 2023-03-03T15:50:52,941 Collecting polyply==1.5.0 2023-03-03T15:50:52,945 Created temporary directory: /tmp/pip-unpack-6mrvus4e 2023-03-03T15:50:53,198 Downloading polyply-1.5.0.tar.gz (537 kB) 2023-03-03T15:50:54,635 Added polyply==1.5.0 from https://files.pythonhosted.org/packages/6d/c1/a462e435cf2ddb6f05e485f7ed071591026c4c7f36b9f6866252e971aad7/polyply-1.5.0.tar.gz to build tracker '/tmp/pip-build-tracker-t2ahah_o' 2023-03-03T15:50:54,645 Created temporary directory: /tmp/pip-build-env-6d8hgd5r 2023-03-03T15:50:54,666 Installing build dependencies: started 2023-03-03T15:50:54,669 Running command pip subprocess to install build dependencies 2023-03-03T15:50:57,334 Using pip 23.0.1 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7) 2023-03-03T15:50:58,533 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-03-03T15:50:58,594 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-03-03T15:50:59,499 Collecting wheel 2023-03-03T15:50:59,559 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2023-03-03T15:51:03,263 Collecting setuptools>=30.3.0 2023-03-03T15:51:03,505 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.4.0-py3-none-any.whl (1.1 MB) 2023-03-03T15:51:04,130 Collecting pbr 2023-03-03T15:51:04,250 Using cached https://www.piwheels.org/simple/pbr/pbr-5.11.1-py2.py3-none-any.whl (112 kB) 2023-03-03T15:51:08,934 Installing collected packages: wheel, setuptools, pbr 2023-03-03T15:51:09,211 Creating /tmp/pip-build-env-6d8hgd5r/overlay/bin 2023-03-03T15:51:09,215 changing mode of /tmp/pip-build-env-6d8hgd5r/overlay/bin/wheel to 755 2023-03-03T15:51:14,061 changing mode of /tmp/pip-build-env-6d8hgd5r/overlay/bin/pbr to 755 2023-03-03T15:51:14,096 Successfully installed pbr-5.11.1 setuptools-67.4.0 wheel-0.38.4 2023-03-03T15:51:15,048 Installing build dependencies: finished with status 'done' 2023-03-03T15:51:15,072 Getting requirements to build wheel: started 2023-03-03T15:51:15,074 Running command Getting requirements to build wheel 2023-03-03T15:51:16,410 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2023-03-03T15:51:16,412 % (opt, underscore_opt) 2023-03-03T15:51:16,412 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2023-03-03T15:51:16,412 % (opt, underscore_opt) 2023-03-03T15:51:16,413 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2023-03-03T15:51:16,413 % (opt, underscore_opt) 2023-03-03T15:51:16,413 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2023-03-03T15:51:16,414 % (opt, underscore_opt) 2023-03-03T15:51:16,520 Getting requirements to build wheel: finished with status 'done' 2023-03-03T15:51:16,546 Created temporary directory: /tmp/pip-modern-metadata-agv47jci 2023-03-03T15:51:16,552 Preparing metadata (pyproject.toml): started 2023-03-03T15:51:16,556 Running command Preparing metadata (pyproject.toml) 2023-03-03T15:51:18,417 running dist_info 2023-03-03T15:51:18,422 creating /tmp/pip-modern-metadata-agv47jci/polyply.egg-info 2023-03-03T15:51:18,484 writing /tmp/pip-modern-metadata-agv47jci/polyply.egg-info/PKG-INFO 2023-03-03T15:51:18,492 writing dependency_links to /tmp/pip-modern-metadata-agv47jci/polyply.egg-info/dependency_links.txt 2023-03-03T15:51:18,497 writing requirements to /tmp/pip-modern-metadata-agv47jci/polyply.egg-info/requires.txt 2023-03-03T15:51:18,499 writing top-level names to /tmp/pip-modern-metadata-agv47jci/polyply.egg-info/top_level.txt 2023-03-03T15:51:18,502 [pbr] Processing SOURCES.txt 2023-03-03T15:51:18,502 writing manifest file '/tmp/pip-modern-metadata-agv47jci/polyply.egg-info/SOURCES.txt' 2023-03-03T15:51:18,749 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/easy_install.py:147: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. 2023-03-03T15:51:18,749 EasyInstallDeprecationWarning, 2023-03-03T15:51:18,750 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-03-03T15:51:18,750 setuptools.SetuptoolsDeprecationWarning, 2023-03-03T15:51:18,750 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2023-03-03T15:51:18,751 % (opt, underscore_opt) 2023-03-03T15:51:18,751 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2023-03-03T15:51:18,751 % (opt, underscore_opt) 2023-03-03T15:51:18,752 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2023-03-03T15:51:18,752 % (opt, underscore_opt) 2023-03-03T15:51:18,752 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2023-03-03T15:51:18,752 % (opt, underscore_opt) 2023-03-03T15:51:18,753 warning: no previously-included files found matching '.gitignore' 2023-03-03T15:51:18,753 warning: no previously-included files found matching '.gitreview' 2023-03-03T15:51:18,753 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-03-03T15:51:18,876 adding license file 'LICENSE' 2023-03-03T15:51:18,876 adding license file 'AUTHORS' 2023-03-03T15:51:18,904 writing manifest file '/tmp/pip-modern-metadata-agv47jci/polyply.egg-info/SOURCES.txt' 2023-03-03T15:51:18,907 creating '/tmp/pip-modern-metadata-agv47jci/polyply-1.5.0.dist-info' 2023-03-03T15:51:19,009 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2023-03-03T15:51:19,251 Preparing metadata (pyproject.toml): finished with status 'done' 2023-03-03T15:51:19,267 Source in /tmp/pip-wheel-y4bf7u05/polyply_216d42700773477bbf6a20ae717d1e85 has version 1.5.0, which satisfies requirement polyply==1.5.0 from https://files.pythonhosted.org/packages/6d/c1/a462e435cf2ddb6f05e485f7ed071591026c4c7f36b9f6866252e971aad7/polyply-1.5.0.tar.gz 2023-03-03T15:51:19,269 Removed polyply==1.5.0 from https://files.pythonhosted.org/packages/6d/c1/a462e435cf2ddb6f05e485f7ed071591026c4c7f36b9f6866252e971aad7/polyply-1.5.0.tar.gz from build tracker '/tmp/pip-build-tracker-t2ahah_o' 2023-03-03T15:51:19,279 Created temporary directory: /tmp/pip-unpack-3wem_rx6 2023-03-03T15:51:19,281 Building wheels for collected packages: polyply 2023-03-03T15:51:19,290 Created temporary directory: /tmp/pip-wheel-pnbivjkh 2023-03-03T15:51:19,290 Destination directory: /tmp/pip-wheel-pnbivjkh 2023-03-03T15:51:19,295 Building wheel for polyply (pyproject.toml): started 2023-03-03T15:51:19,297 Running command Building wheel for polyply (pyproject.toml) 2023-03-03T15:51:21,159 running bdist_wheel 2023-03-03T15:51:21,180 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/easy_install.py:147: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. 2023-03-03T15:51:21,181 EasyInstallDeprecationWarning, 2023-03-03T15:51:21,181 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2023-03-03T15:51:21,181 % (opt, underscore_opt) 2023-03-03T15:51:21,182 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2023-03-03T15:51:21,182 % (opt, underscore_opt) 2023-03-03T15:51:21,183 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2023-03-03T15:51:21,183 % (opt, underscore_opt) 2023-03-03T15:51:21,183 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2023-03-03T15:51:21,184 % (opt, underscore_opt) 2023-03-03T15:51:21,184 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2023-03-03T15:51:21,216 running build 2023-03-03T15:51:21,217 running build_py 2023-03-03T15:51:21,239 creating build 2023-03-03T15:51:21,240 creating build/lib 2023-03-03T15:51:21,241 creating build/lib/polyply 2023-03-03T15:51:21,243 creating build/lib/polyply/tests 2023-03-03T15:51:21,245 copying polyply/tests/test_gen_coords.py -> build/lib/polyply/tests 2023-03-03T15:51:21,249 copying polyply/tests/test_itp_files.py -> build/lib/polyply/tests 2023-03-03T15:51:21,253 copying polyply/tests/test_backmap.py -> build/lib/polyply/tests 2023-03-03T15:51:21,256 copying polyply/tests/test_random_walk.py -> build/lib/polyply/tests 2023-03-03T15:51:21,261 copying polyply/tests/test_meta_molecule.py -> build/lib/polyply/tests 2023-03-03T15:51:21,265 copying polyply/tests/test_nb_engine.py -> build/lib/polyply/tests 2023-03-03T15:51:21,269 copying polyply/tests/test_lib_files.py -> build/lib/polyply/tests 2023-03-03T15:51:21,274 copying polyply/tests/test_ff_parser.py -> build/lib/polyply/tests 2023-03-03T15:51:21,277 copying polyply/tests/test_restraints.py -> build/lib/polyply/tests 2023-03-03T15:51:21,280 copying polyply/tests/example_fixtures.py -> build/lib/polyply/tests 2023-03-03T15:51:21,284 copying polyply/tests/test_persistence.py -> build/lib/polyply/tests 2023-03-03T15:51:21,288 copying polyply/tests/test_gen_coords_logic.py -> build/lib/polyply/tests 2023-03-03T15:51:21,292 copying polyply/tests/test_linalg.py -> build/lib/polyply/tests 2023-03-03T15:51:21,296 copying polyply/tests/test_build_file_parser.py -> build/lib/polyply/tests 2023-03-03T15:51:21,300 copying polyply/tests/test_polyply_input.py -> build/lib/polyply/tests 2023-03-03T15:51:21,304 copying polyply/tests/test_topology.py -> build/lib/polyply/tests 2023-03-03T15:51:21,309 copying polyply/tests/test_graph_utils.py -> build/lib/polyply/tests 2023-03-03T15:51:21,313 copying polyply/tests/test_generate_templates.py -> build/lib/polyply/tests 2023-03-03T15:51:21,317 copying polyply/tests/__init__.py -> build/lib/polyply/tests 2023-03-03T15:51:21,321 copying polyply/tests/test_load_library.py -> build/lib/polyply/tests 2023-03-03T15:51:21,324 copying polyply/tests/test_map_to_molecule.py -> build/lib/polyply/tests 2023-03-03T15:51:21,328 copying polyply/tests/test_build_system.py -> build/lib/polyply/tests 2023-03-03T15:51:21,333 copying polyply/tests/test_gen_params.py -> build/lib/polyply/tests 2023-03-03T15:51:21,337 copying polyply/tests/test_gen_seq.py -> build/lib/polyply/tests 2023-03-03T15:51:21,341 copying polyply/tests/test_logging.py -> build/lib/polyply/tests 2023-03-03T15:51:21,344 copying polyply/tests/test_optimize_geometry.py -> build/lib/polyply/tests 2023-03-03T15:51:21,349 copying polyply/tests/test_simple_seq_parsers.py -> build/lib/polyply/tests 2023-03-03T15:51:21,353 copying polyply/tests/test_top_parser.py -> build/lib/polyply/tests 2023-03-03T15:51:21,357 copying polyply/tests/test_annotate_lingads.py -> build/lib/polyply/tests 2023-03-03T15:51:21,362 copying polyply/tests/test_vs_builder.py -> build/lib/polyply/tests 2023-03-03T15:51:21,366 copying polyply/tests/test_apply_links.py -> build/lib/polyply/tests 2023-03-03T15:51:21,371 copying polyply/tests/test_residue_check.py -> build/lib/polyply/tests 2023-03-03T15:51:21,379 creating build/lib/polyply/src 2023-03-03T15:51:21,381 copying polyply/src/simple_seq_parsers.py -> build/lib/polyply/src 2023-03-03T15:51:21,386 copying polyply/src/apply_links.py -> build/lib/polyply/src 2023-03-03T15:51:21,390 copying polyply/src/ff_parser_sub.py -> build/lib/polyply/src 2023-03-03T15:51:21,394 copying polyply/src/linalg_functions.py -> build/lib/polyply/src 2023-03-03T15:51:21,398 copying polyply/src/nonbond_engine.py -> build/lib/polyply/src 2023-03-03T15:51:21,402 copying polyply/src/persistence.py -> build/lib/polyply/src 2023-03-03T15:51:21,406 copying polyply/src/virtual_site_builder.py -> build/lib/polyply/src 2023-03-03T15:51:21,410 copying polyply/src/restraints.py -> build/lib/polyply/src 2023-03-03T15:51:21,414 copying polyply/src/top_parser.py -> build/lib/polyply/src 2023-03-03T15:51:21,419 copying polyply/src/load_library.py -> build/lib/polyply/src 2023-03-03T15:51:21,423 copying polyply/src/backmap.py -> build/lib/polyply/src 2023-03-03T15:51:21,427 copying polyply/src/gen_seq.py -> build/lib/polyply/src 2023-03-03T15:51:21,431 copying polyply/src/annotate_ligands.py -> build/lib/polyply/src 2023-03-03T15:51:21,435 copying polyply/src/build_system.py -> build/lib/polyply/src 2023-03-03T15:51:21,439 copying polyply/src/topology.py -> build/lib/polyply/src 2023-03-03T15:51:21,444 copying polyply/src/map_to_molecule.py -> build/lib/polyply/src 2023-03-03T15:51:21,449 copying polyply/src/graph_utils.py -> build/lib/polyply/src 2023-03-03T15:51:21,453 copying polyply/src/gen_coords.py -> build/lib/polyply/src 2023-03-03T15:51:21,457 copying polyply/src/build_file_parser.py -> build/lib/polyply/src 2023-03-03T15:51:21,461 copying polyply/src/apply_modifications.py -> build/lib/polyply/src 2023-03-03T15:51:21,464 copying polyply/src/__init__.py -> build/lib/polyply/src 2023-03-03T15:51:21,467 copying polyply/src/polyply_parser.py -> build/lib/polyply/src 2023-03-03T15:51:21,471 copying polyply/src/processor.py -> build/lib/polyply/src 2023-03-03T15:51:21,475 copying polyply/src/check_residue_equivalence.py -> build/lib/polyply/src 2023-03-03T15:51:21,479 copying polyply/src/random_walk.py -> build/lib/polyply/src 2023-03-03T15:51:21,483 copying polyply/src/generate_templates.py -> build/lib/polyply/src 2023-03-03T15:51:21,487 copying polyply/src/logging.py -> build/lib/polyply/src 2023-03-03T15:51:21,491 copying polyply/src/minimizer.py -> build/lib/polyply/src 2023-03-03T15:51:21,495 copying polyply/src/gen_itp.py -> build/lib/polyply/src 2023-03-03T15:51:21,499 copying polyply/src/meta_molecule.py -> build/lib/polyply/src 2023-03-03T15:51:21,504 copying polyply/__init__.py -> build/lib/polyply 2023-03-03T15:51:21,508 creating build/lib/polyply/data 2023-03-03T15:51:21,510 copying polyply/data/__init__.py -> build/lib/polyply/data 2023-03-03T15:51:21,513 running egg_info 2023-03-03T15:51:21,578 writing polyply.egg-info/PKG-INFO 2023-03-03T15:51:21,584 writing dependency_links to polyply.egg-info/dependency_links.txt 2023-03-03T15:51:21,588 writing requirements to polyply.egg-info/requires.txt 2023-03-03T15:51:21,591 writing top-level names to polyply.egg-info/top_level.txt 2023-03-03T15:51:21,593 [pbr] Reusing existing SOURCES.txt 2023-03-03T15:51:21,630 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.data.gromos53A6' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,631 !! 2023-03-03T15:51:21,632 ############################ 2023-03-03T15:51:21,632 # Package would be ignored # 2023-03-03T15:51:21,632 ############################ 2023-03-03T15:51:21,633 Python recognizes 'polyply.data.gromos53A6' as an importable package, 2023-03-03T15:51:21,633 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,633 'polyply.data.gromos53A6' has been automatically added to the distribution only 2023-03-03T15:51:21,634 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,634 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,635 Please make sure that 'polyply.data.gromos53A6' is included as a package by using 2023-03-03T15:51:21,635 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,635 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,636 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,636 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,636 documentation page. 2023-03-03T15:51:21,637 !! 2023-03-03T15:51:21,638 check.warn(importable) 2023-03-03T15:51:21,638 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.data.martini2' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,639 !! 2023-03-03T15:51:21,639 ############################ 2023-03-03T15:51:21,640 # Package would be ignored # 2023-03-03T15:51:21,640 ############################ 2023-03-03T15:51:21,640 Python recognizes 'polyply.data.martini2' as an importable package, 2023-03-03T15:51:21,641 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,641 'polyply.data.martini2' has been automatically added to the distribution only 2023-03-03T15:51:21,642 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,642 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,642 Please make sure that 'polyply.data.martini2' is included as a package by using 2023-03-03T15:51:21,643 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,643 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,643 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,644 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,644 documentation page. 2023-03-03T15:51:21,645 !! 2023-03-03T15:51:21,646 check.warn(importable) 2023-03-03T15:51:21,646 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.data.martini3' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,646 !! 2023-03-03T15:51:21,647 ############################ 2023-03-03T15:51:21,647 # Package would be ignored # 2023-03-03T15:51:21,648 ############################ 2023-03-03T15:51:21,648 Python recognizes 'polyply.data.martini3' as an importable package, 2023-03-03T15:51:21,648 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,649 'polyply.data.martini3' has been automatically added to the distribution only 2023-03-03T15:51:21,649 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,650 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,650 Please make sure that 'polyply.data.martini3' is included as a package by using 2023-03-03T15:51:21,650 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,651 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,651 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,652 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,652 documentation page. 2023-03-03T15:51:21,653 !! 2023-03-03T15:51:21,653 check.warn(importable) 2023-03-03T15:51:21,654 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.data.martini3_beta' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,654 !! 2023-03-03T15:51:21,655 ############################ 2023-03-03T15:51:21,655 # Package would be ignored # 2023-03-03T15:51:21,655 ############################ 2023-03-03T15:51:21,656 Python recognizes 'polyply.data.martini3_beta' as an importable package, 2023-03-03T15:51:21,656 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,656 'polyply.data.martini3_beta' has been automatically added to the distribution only 2023-03-03T15:51:21,657 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,657 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,658 Please make sure that 'polyply.data.martini3_beta' is included as a package by using 2023-03-03T15:51:21,658 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,658 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,659 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,659 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,659 documentation page. 2023-03-03T15:51:21,660 !! 2023-03-03T15:51:21,661 check.warn(importable) 2023-03-03T15:51:21,661 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.data.oplsaaLigParGen' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,662 !! 2023-03-03T15:51:21,662 ############################ 2023-03-03T15:51:21,663 # Package would be ignored # 2023-03-03T15:51:21,663 ############################ 2023-03-03T15:51:21,663 Python recognizes 'polyply.data.oplsaaLigParGen' as an importable package, 2023-03-03T15:51:21,664 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,664 'polyply.data.oplsaaLigParGen' has been automatically added to the distribution only 2023-03-03T15:51:21,664 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,665 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,665 Please make sure that 'polyply.data.oplsaaLigParGen' is included as a package by using 2023-03-03T15:51:21,666 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,666 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,666 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,667 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,667 documentation page. 2023-03-03T15:51:21,668 !! 2023-03-03T15:51:21,669 check.warn(importable) 2023-03-03T15:51:21,669 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.data.parmbsc1' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,669 !! 2023-03-03T15:51:21,670 ############################ 2023-03-03T15:51:21,670 # Package would be ignored # 2023-03-03T15:51:21,671 ############################ 2023-03-03T15:51:21,671 Python recognizes 'polyply.data.parmbsc1' as an importable package, 2023-03-03T15:51:21,671 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,672 'polyply.data.parmbsc1' has been automatically added to the distribution only 2023-03-03T15:51:21,672 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,672 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,673 Please make sure that 'polyply.data.parmbsc1' is included as a package by using 2023-03-03T15:51:21,673 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,674 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,674 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,674 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,675 documentation page. 2023-03-03T15:51:21,676 !! 2023-03-03T15:51:21,676 check.warn(importable) 2023-03-03T15:51:21,676 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.ff' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,677 !! 2023-03-03T15:51:21,678 ############################ 2023-03-03T15:51:21,678 # Package would be ignored # 2023-03-03T15:51:21,678 ############################ 2023-03-03T15:51:21,679 Python recognizes 'polyply.tests.test_data.ff' as an importable package, 2023-03-03T15:51:21,679 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,679 'polyply.tests.test_data.ff' has been automatically added to the distribution only 2023-03-03T15:51:21,680 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,680 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,681 Please make sure that 'polyply.tests.test_data.ff' is included as a package by using 2023-03-03T15:51:21,681 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,681 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,681 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,682 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,682 documentation page. 2023-03-03T15:51:21,683 !! 2023-03-03T15:51:21,684 check.warn(importable) 2023-03-03T15:51:21,684 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.gen_params.input' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,685 !! 2023-03-03T15:51:21,685 ############################ 2023-03-03T15:51:21,686 # Package would be ignored # 2023-03-03T15:51:21,686 ############################ 2023-03-03T15:51:21,686 Python recognizes 'polyply.tests.test_data.gen_params.input' as an importable package, 2023-03-03T15:51:21,687 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,687 'polyply.tests.test_data.gen_params.input' has been automatically added to the distribution only 2023-03-03T15:51:21,688 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,688 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,688 Please make sure that 'polyply.tests.test_data.gen_params.input' is included as a package by using 2023-03-03T15:51:21,689 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,689 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,689 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,690 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,690 documentation page. 2023-03-03T15:51:21,691 !! 2023-03-03T15:51:21,692 check.warn(importable) 2023-03-03T15:51:21,692 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.gen_params.logging' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,692 !! 2023-03-03T15:51:21,693 ############################ 2023-03-03T15:51:21,693 # Package would be ignored # 2023-03-03T15:51:21,694 ############################ 2023-03-03T15:51:21,694 Python recognizes 'polyply.tests.test_data.gen_params.logging' as an importable package, 2023-03-03T15:51:21,694 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,695 'polyply.tests.test_data.gen_params.logging' has been automatically added to the distribution only 2023-03-03T15:51:21,695 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,695 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,696 Please make sure that 'polyply.tests.test_data.gen_params.logging' is included as a package by using 2023-03-03T15:51:21,696 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,697 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,697 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,698 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,698 documentation page. 2023-03-03T15:51:21,699 !! 2023-03-03T15:51:21,699 check.warn(importable) 2023-03-03T15:51:21,700 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.gen_params.output' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,700 !! 2023-03-03T15:51:21,701 ############################ 2023-03-03T15:51:21,701 # Package would be ignored # 2023-03-03T15:51:21,701 ############################ 2023-03-03T15:51:21,702 Python recognizes 'polyply.tests.test_data.gen_params.output' as an importable package, 2023-03-03T15:51:21,702 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,703 'polyply.tests.test_data.gen_params.output' has been automatically added to the distribution only 2023-03-03T15:51:21,703 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,703 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,704 Please make sure that 'polyply.tests.test_data.gen_params.output' is included as a package by using 2023-03-03T15:51:21,704 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,704 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,705 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,705 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,705 documentation page. 2023-03-03T15:51:21,706 !! 2023-03-03T15:51:21,707 check.warn(importable) 2023-03-03T15:51:21,707 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.gen_params.ref' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,707 !! 2023-03-03T15:51:21,708 ############################ 2023-03-03T15:51:21,709 # Package would be ignored # 2023-03-03T15:51:21,709 ############################ 2023-03-03T15:51:21,709 Python recognizes 'polyply.tests.test_data.gen_params.ref' as an importable package, 2023-03-03T15:51:21,709 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,710 'polyply.tests.test_data.gen_params.ref' has been automatically added to the distribution only 2023-03-03T15:51:21,710 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,711 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,711 Please make sure that 'polyply.tests.test_data.gen_params.ref' is included as a package by using 2023-03-03T15:51:21,711 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,712 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,712 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,712 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,713 documentation page. 2023-03-03T15:51:21,714 !! 2023-03-03T15:51:21,714 check.warn(importable) 2023-03-03T15:51:21,714 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.gen_seq.input' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,715 !! 2023-03-03T15:51:21,716 ############################ 2023-03-03T15:51:21,716 # Package would be ignored # 2023-03-03T15:51:21,716 ############################ 2023-03-03T15:51:21,716 Python recognizes 'polyply.tests.test_data.gen_seq.input' as an importable package, 2023-03-03T15:51:21,717 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,717 'polyply.tests.test_data.gen_seq.input' has been automatically added to the distribution only 2023-03-03T15:51:21,718 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,718 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,719 Please make sure that 'polyply.tests.test_data.gen_seq.input' is included as a package by using 2023-03-03T15:51:21,719 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,719 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,719 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,720 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,720 documentation page. 2023-03-03T15:51:21,721 !! 2023-03-03T15:51:21,722 check.warn(importable) 2023-03-03T15:51:21,722 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.gen_seq.output' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,722 !! 2023-03-03T15:51:21,723 ############################ 2023-03-03T15:51:21,723 # Package would be ignored # 2023-03-03T15:51:21,724 ############################ 2023-03-03T15:51:21,724 Python recognizes 'polyply.tests.test_data.gen_seq.output' as an importable package, 2023-03-03T15:51:21,724 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,725 'polyply.tests.test_data.gen_seq.output' has been automatically added to the distribution only 2023-03-03T15:51:21,725 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,725 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,726 Please make sure that 'polyply.tests.test_data.gen_seq.output' is included as a package by using 2023-03-03T15:51:21,726 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,726 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,727 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,727 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,728 documentation page. 2023-03-03T15:51:21,729 !! 2023-03-03T15:51:21,729 check.warn(importable) 2023-03-03T15:51:21,729 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.gen_seq.ref' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,730 !! 2023-03-03T15:51:21,731 ############################ 2023-03-03T15:51:21,731 # Package would be ignored # 2023-03-03T15:51:21,731 ############################ 2023-03-03T15:51:21,731 Python recognizes 'polyply.tests.test_data.gen_seq.ref' as an importable package, 2023-03-03T15:51:21,732 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,732 'polyply.tests.test_data.gen_seq.ref' has been automatically added to the distribution only 2023-03-03T15:51:21,733 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,733 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,733 Please make sure that 'polyply.tests.test_data.gen_seq.ref' is included as a package by using 2023-03-03T15:51:21,734 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,734 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,734 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,735 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,735 documentation page. 2023-03-03T15:51:21,736 !! 2023-03-03T15:51:21,737 check.warn(importable) 2023-03-03T15:51:21,737 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.itp' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,737 !! 2023-03-03T15:51:21,738 ############################ 2023-03-03T15:51:21,739 # Package would be ignored # 2023-03-03T15:51:21,739 ############################ 2023-03-03T15:51:21,739 Python recognizes 'polyply.tests.test_data.itp' as an importable package, 2023-03-03T15:51:21,740 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,740 'polyply.tests.test_data.itp' has been automatically added to the distribution only 2023-03-03T15:51:21,740 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,741 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,741 Please make sure that 'polyply.tests.test_data.itp' is included as a package by using 2023-03-03T15:51:21,742 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,742 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,742 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,743 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,743 documentation page. 2023-03-03T15:51:21,744 !! 2023-03-03T15:51:21,744 check.warn(importable) 2023-03-03T15:51:21,745 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.json' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,745 !! 2023-03-03T15:51:21,746 ############################ 2023-03-03T15:51:21,746 # Package would be ignored # 2023-03-03T15:51:21,746 ############################ 2023-03-03T15:51:21,747 Python recognizes 'polyply.tests.test_data.json' as an importable package, 2023-03-03T15:51:21,747 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,748 'polyply.tests.test_data.json' has been automatically added to the distribution only 2023-03-03T15:51:21,748 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,748 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,749 Please make sure that 'polyply.tests.test_data.json' is included as a package by using 2023-03-03T15:51:21,749 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,749 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,750 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,750 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,751 documentation page. 2023-03-03T15:51:21,751 !! 2023-03-03T15:51:21,752 check.warn(importable) 2023-03-03T15:51:21,752 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,753 !! 2023-03-03T15:51:21,753 ############################ 2023-03-03T15:51:21,754 # Package would be ignored # 2023-03-03T15:51:21,754 ############################ 2023-03-03T15:51:21,754 Python recognizes 'polyply.tests.test_data.library_tests' as an importable package, 2023-03-03T15:51:21,755 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,755 'polyply.tests.test_data.library_tests' has been automatically added to the distribution only 2023-03-03T15:51:21,755 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,756 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,756 Please make sure that 'polyply.tests.test_data.library_tests' is included as a package by using 2023-03-03T15:51:21,757 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,757 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,757 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,758 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,758 documentation page. 2023-03-03T15:51:21,759 !! 2023-03-03T15:51:21,760 check.warn(importable) 2023-03-03T15:51:21,760 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,760 !! 2023-03-03T15:51:21,761 ############################ 2023-03-03T15:51:21,761 # Package would be ignored # 2023-03-03T15:51:21,762 ############################ 2023-03-03T15:51:21,762 Python recognizes 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' as an importable package, 2023-03-03T15:51:21,762 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,763 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,763 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,763 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,764 Please make sure that 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' is included as a package by using 2023-03-03T15:51:21,764 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,765 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,765 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,765 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,766 documentation page. 2023-03-03T15:51:21,767 !! 2023-03-03T15:51:21,767 check.warn(importable) 2023-03-03T15:51:21,767 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.PEL' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,768 !! 2023-03-03T15:51:21,769 ############################ 2023-03-03T15:51:21,769 # Package would be ignored # 2023-03-03T15:51:21,769 ############################ 2023-03-03T15:51:21,769 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEL' as an importable package, 2023-03-03T15:51:21,770 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,770 'polyply.tests.test_data.library_tests.martini2.PEL' has been automatically added to the distribution only 2023-03-03T15:51:21,771 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,771 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,771 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEL' is included as a package by using 2023-03-03T15:51:21,772 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,772 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,772 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,773 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,773 documentation page. 2023-03-03T15:51:21,774 !! 2023-03-03T15:51:21,775 check.warn(importable) 2023-03-03T15:51:21,775 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,775 !! 2023-03-03T15:51:21,776 ############################ 2023-03-03T15:51:21,776 # Package would be ignored # 2023-03-03T15:51:21,777 ############################ 2023-03-03T15:51:21,777 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' as an importable package, 2023-03-03T15:51:21,777 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,778 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,778 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,778 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,779 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' is included as a package by using 2023-03-03T15:51:21,779 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,780 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,780 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,780 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,781 documentation page. 2023-03-03T15:51:21,782 !! 2023-03-03T15:51:21,782 check.warn(importable) 2023-03-03T15:51:21,782 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,783 !! 2023-03-03T15:51:21,783 ############################ 2023-03-03T15:51:21,784 # Package would be ignored # 2023-03-03T15:51:21,784 ############################ 2023-03-03T15:51:21,784 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' as an importable package, 2023-03-03T15:51:21,785 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,785 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,785 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,786 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,786 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' is included as a package by using 2023-03-03T15:51:21,787 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,787 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,787 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,788 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,788 documentation page. 2023-03-03T15:51:21,789 !! 2023-03-03T15:51:21,790 check.warn(importable) 2023-03-03T15:51:21,790 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.PEO_PE' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,790 !! 2023-03-03T15:51:21,791 ############################ 2023-03-03T15:51:21,791 # Package would be ignored # 2023-03-03T15:51:21,792 ############################ 2023-03-03T15:51:21,792 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO_PE' as an importable package, 2023-03-03T15:51:21,792 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,793 'polyply.tests.test_data.library_tests.martini2.PEO_PE' has been automatically added to the distribution only 2023-03-03T15:51:21,793 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,793 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,794 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO_PE' is included as a package by using 2023-03-03T15:51:21,794 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,795 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,795 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,795 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,796 documentation page. 2023-03-03T15:51:21,797 !! 2023-03-03T15:51:21,797 check.warn(importable) 2023-03-03T15:51:21,797 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,798 !! 2023-03-03T15:51:21,799 ############################ 2023-03-03T15:51:21,799 # Package would be ignored # 2023-03-03T15:51:21,799 ############################ 2023-03-03T15:51:21,799 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' as an importable package, 2023-03-03T15:51:21,800 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,800 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,801 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,801 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,801 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' is included as a package by using 2023-03-03T15:51:21,802 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,802 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,802 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,803 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,803 documentation page. 2023-03-03T15:51:21,804 !! 2023-03-03T15:51:21,805 check.warn(importable) 2023-03-03T15:51:21,805 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.PS.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,805 !! 2023-03-03T15:51:21,806 ############################ 2023-03-03T15:51:21,806 # Package would be ignored # 2023-03-03T15:51:21,807 ############################ 2023-03-03T15:51:21,807 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PS.polyply' as an importable package, 2023-03-03T15:51:21,807 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,808 'polyply.tests.test_data.library_tests.martini2.PS.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,808 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,808 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,809 Please make sure that 'polyply.tests.test_data.library_tests.martini2.PS.polyply' is included as a package by using 2023-03-03T15:51:21,809 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,809 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,810 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,810 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,811 documentation page. 2023-03-03T15:51:21,811 !! 2023-03-03T15:51:21,812 check.warn(importable) 2023-03-03T15:51:21,812 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.ssDNA' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,813 !! 2023-03-03T15:51:21,813 ############################ 2023-03-03T15:51:21,814 # Package would be ignored # 2023-03-03T15:51:21,814 ############################ 2023-03-03T15:51:21,814 Python recognizes 'polyply.tests.test_data.library_tests.martini2.ssDNA' as an importable package, 2023-03-03T15:51:21,815 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,815 'polyply.tests.test_data.library_tests.martini2.ssDNA' has been automatically added to the distribution only 2023-03-03T15:51:21,815 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,816 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,816 Please make sure that 'polyply.tests.test_data.library_tests.martini2.ssDNA' is included as a package by using 2023-03-03T15:51:21,817 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,817 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,817 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,818 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,818 documentation page. 2023-03-03T15:51:21,819 !! 2023-03-03T15:51:21,819 check.warn(importable) 2023-03-03T15:51:21,820 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,820 !! 2023-03-03T15:51:21,821 ############################ 2023-03-03T15:51:21,821 # Package would be ignored # 2023-03-03T15:51:21,822 ############################ 2023-03-03T15:51:21,822 Python recognizes 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' as an importable package, 2023-03-03T15:51:21,822 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,823 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,823 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,823 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,824 Please make sure that 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' is included as a package by using 2023-03-03T15:51:21,824 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,824 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,825 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,825 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,826 documentation page. 2023-03-03T15:51:21,826 !! 2023-03-03T15:51:21,827 check.warn(importable) 2023-03-03T15:51:21,827 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,828 !! 2023-03-03T15:51:21,828 ############################ 2023-03-03T15:51:21,829 # Package would be ignored # 2023-03-03T15:51:21,829 ############################ 2023-03-03T15:51:21,829 Python recognizes 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' as an importable package, 2023-03-03T15:51:21,830 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,830 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,830 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,831 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,831 Please make sure that 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' is included as a package by using 2023-03-03T15:51:21,832 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,832 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,832 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,833 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,833 documentation page. 2023-03-03T15:51:21,834 !! 2023-03-03T15:51:21,834 check.warn(importable) 2023-03-03T15:51:21,835 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,835 !! 2023-03-03T15:51:21,836 ############################ 2023-03-03T15:51:21,836 # Package would be ignored # 2023-03-03T15:51:21,837 ############################ 2023-03-03T15:51:21,837 Python recognizes 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' as an importable package, 2023-03-03T15:51:21,837 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,838 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,838 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,838 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,839 Please make sure that 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' is included as a package by using 2023-03-03T15:51:21,839 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,840 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,840 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,841 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,841 documentation page. 2023-03-03T15:51:21,843 !! 2023-03-03T15:51:21,843 check.warn(importable) 2023-03-03T15:51:21,844 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,844 !! 2023-03-03T15:51:21,846 ############################ 2023-03-03T15:51:21,846 # Package would be ignored # 2023-03-03T15:51:21,847 ############################ 2023-03-03T15:51:21,847 Python recognizes 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' as an importable package, 2023-03-03T15:51:21,848 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,849 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,849 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,849 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,850 Please make sure that 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' is included as a package by using 2023-03-03T15:51:21,851 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,851 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,852 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,852 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,853 documentation page. 2023-03-03T15:51:21,854 !! 2023-03-03T15:51:21,855 check.warn(importable) 2023-03-03T15:51:21,856 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.PDMS.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,856 !! 2023-03-03T15:51:21,857 ############################ 2023-03-03T15:51:21,858 # Package would be ignored # 2023-03-03T15:51:21,858 ############################ 2023-03-03T15:51:21,859 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PDMS.polyply' as an importable package, 2023-03-03T15:51:21,859 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,860 'polyply.tests.test_data.library_tests.martini3.PDMS.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,860 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,861 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,862 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PDMS.polyply' is included as a package by using 2023-03-03T15:51:21,862 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,863 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,863 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,864 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,864 documentation page. 2023-03-03T15:51:21,865 !! 2023-03-03T15:51:21,866 check.warn(importable) 2023-03-03T15:51:21,867 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.PE.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,867 !! 2023-03-03T15:51:21,869 ############################ 2023-03-03T15:51:21,869 # Package would be ignored # 2023-03-03T15:51:21,869 ############################ 2023-03-03T15:51:21,870 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PE.polyply' as an importable package, 2023-03-03T15:51:21,870 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,871 'polyply.tests.test_data.library_tests.martini3.PE.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,872 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,872 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,873 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PE.polyply' is included as a package by using 2023-03-03T15:51:21,873 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,874 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,874 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,875 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,875 documentation page. 2023-03-03T15:51:21,877 !! 2023-03-03T15:51:21,878 check.warn(importable) 2023-03-03T15:51:21,878 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,879 !! 2023-03-03T15:51:21,880 ############################ 2023-03-03T15:51:21,880 # Package would be ignored # 2023-03-03T15:51:21,881 ############################ 2023-03-03T15:51:21,881 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' as an importable package, 2023-03-03T15:51:21,882 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,882 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,883 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,883 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,884 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' is included as a package by using 2023-03-03T15:51:21,885 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,885 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,885 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,886 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,887 documentation page. 2023-03-03T15:51:21,888 !! 2023-03-03T15:51:21,889 check.warn(importable) 2023-03-03T15:51:21,889 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,890 !! 2023-03-03T15:51:21,891 ############################ 2023-03-03T15:51:21,891 # Package would be ignored # 2023-03-03T15:51:21,892 ############################ 2023-03-03T15:51:21,892 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' as an importable package, 2023-03-03T15:51:21,893 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,893 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,894 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,894 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,895 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' is included as a package by using 2023-03-03T15:51:21,896 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,896 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,896 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,897 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,898 documentation page. 2023-03-03T15:51:21,899 !! 2023-03-03T15:51:21,900 check.warn(importable) 2023-03-03T15:51:21,900 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.PROT' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,901 !! 2023-03-03T15:51:21,902 ############################ 2023-03-03T15:51:21,902 # Package would be ignored # 2023-03-03T15:51:21,903 ############################ 2023-03-03T15:51:21,903 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PROT' as an importable package, 2023-03-03T15:51:21,904 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,905 'polyply.tests.test_data.library_tests.martini3.PROT' has been automatically added to the distribution only 2023-03-03T15:51:21,905 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,906 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,907 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PROT' is included as a package by using 2023-03-03T15:51:21,907 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,908 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,908 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,909 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,909 documentation page. 2023-03-03T15:51:21,910 !! 2023-03-03T15:51:21,911 check.warn(importable) 2023-03-03T15:51:21,911 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,912 !! 2023-03-03T15:51:21,913 ############################ 2023-03-03T15:51:21,914 # Package would be ignored # 2023-03-03T15:51:21,914 ############################ 2023-03-03T15:51:21,914 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' as an importable package, 2023-03-03T15:51:21,915 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,915 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,916 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,916 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,917 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' is included as a package by using 2023-03-03T15:51:21,918 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,918 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,919 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,919 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,920 documentation page. 2023-03-03T15:51:21,921 !! 2023-03-03T15:51:21,922 check.warn(importable) 2023-03-03T15:51:21,922 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.PS.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,923 !! 2023-03-03T15:51:21,924 ############################ 2023-03-03T15:51:21,924 # Package would be ignored # 2023-03-03T15:51:21,924 ############################ 2023-03-03T15:51:21,925 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PS.polyply' as an importable package, 2023-03-03T15:51:21,925 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,926 'polyply.tests.test_data.library_tests.martini3.PS.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,926 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,927 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,928 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PS.polyply' is included as a package by using 2023-03-03T15:51:21,928 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,929 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,929 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,930 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,930 documentation page. 2023-03-03T15:51:21,931 !! 2023-03-03T15:51:21,932 check.warn(importable) 2023-03-03T15:51:21,933 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,933 !! 2023-03-03T15:51:21,934 ############################ 2023-03-03T15:51:21,935 # Package would be ignored # 2023-03-03T15:51:21,935 ############################ 2023-03-03T15:51:21,935 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' as an importable package, 2023-03-03T15:51:21,936 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,937 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,937 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,937 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,938 Please make sure that 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' is included as a package by using 2023-03-03T15:51:21,939 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,939 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,939 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,940 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,941 documentation page. 2023-03-03T15:51:21,942 !! 2023-03-03T15:51:21,943 check.warn(importable) 2023-03-03T15:51:21,943 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,944 !! 2023-03-03T15:51:21,945 ############################ 2023-03-03T15:51:21,945 # Package would be ignored # 2023-03-03T15:51:21,946 ############################ 2023-03-03T15:51:21,946 Python recognizes 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' as an importable package, 2023-03-03T15:51:21,947 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,947 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,948 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,948 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,949 Please make sure that 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' is included as a package by using 2023-03-03T15:51:21,949 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,950 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,950 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,951 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,951 documentation page. 2023-03-03T15:51:21,952 !! 2023-03-03T15:51:21,953 check.warn(importable) 2023-03-03T15:51:21,954 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.parmbsc1.DNA' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,954 !! 2023-03-03T15:51:21,955 ############################ 2023-03-03T15:51:21,956 # Package would be ignored # 2023-03-03T15:51:21,956 ############################ 2023-03-03T15:51:21,956 Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.DNA' as an importable package, 2023-03-03T15:51:21,957 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,958 'polyply.tests.test_data.library_tests.parmbsc1.DNA' has been automatically added to the distribution only 2023-03-03T15:51:21,958 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,958 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,959 Please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.DNA' is included as a package by using 2023-03-03T15:51:21,960 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,960 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,961 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,961 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,962 documentation page. 2023-03-03T15:51:21,963 !! 2023-03-03T15:51:21,964 check.warn(importable) 2023-03-03T15:51:21,964 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,965 !! 2023-03-03T15:51:21,966 ############################ 2023-03-03T15:51:21,966 # Package would be ignored # 2023-03-03T15:51:21,967 ############################ 2023-03-03T15:51:21,967 Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' as an importable package, 2023-03-03T15:51:21,968 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,968 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,969 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,969 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,970 Please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' is included as a package by using 2023-03-03T15:51:21,970 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,971 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,971 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,972 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,972 documentation page. 2023-03-03T15:51:21,973 !! 2023-03-03T15:51:21,974 check.warn(importable) 2023-03-03T15:51:21,975 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.polyply' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,975 !! 2023-03-03T15:51:21,977 ############################ 2023-03-03T15:51:21,977 # Package would be ignored # 2023-03-03T15:51:21,978 ############################ 2023-03-03T15:51:21,978 Python recognizes 'polyply.tests.test_data.polyply' as an importable package, 2023-03-03T15:51:21,978 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,979 'polyply.tests.test_data.polyply' has been automatically added to the distribution only 2023-03-03T15:51:21,979 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,980 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,981 Please make sure that 'polyply.tests.test_data.polyply' is included as a package by using 2023-03-03T15:51:21,981 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,982 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,982 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,983 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,983 documentation page. 2023-03-03T15:51:21,984 !! 2023-03-03T15:51:21,985 check.warn(importable) 2023-03-03T15:51:21,986 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.simple_seq_files' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,986 !! 2023-03-03T15:51:21,987 ############################ 2023-03-03T15:51:21,987 # Package would be ignored # 2023-03-03T15:51:21,988 ############################ 2023-03-03T15:51:21,988 Python recognizes 'polyply.tests.test_data.simple_seq_files' as an importable package, 2023-03-03T15:51:21,989 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:21,990 'polyply.tests.test_data.simple_seq_files' has been automatically added to the distribution only 2023-03-03T15:51:21,990 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:21,990 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:21,991 Please make sure that 'polyply.tests.test_data.simple_seq_files' is included as a package by using 2023-03-03T15:51:21,991 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:21,992 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:21,992 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:21,993 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:21,994 documentation page. 2023-03-03T15:51:21,995 !! 2023-03-03T15:51:21,995 check.warn(importable) 2023-03-03T15:51:21,996 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.struc_build' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:21,996 !! 2023-03-03T15:51:21,998 ############################ 2023-03-03T15:51:21,998 # Package would be ignored # 2023-03-03T15:51:21,998 ############################ 2023-03-03T15:51:21,999 Python recognizes 'polyply.tests.test_data.struc_build' as an importable package, 2023-03-03T15:51:21,999 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:22,000 'polyply.tests.test_data.struc_build' has been automatically added to the distribution only 2023-03-03T15:51:22,000 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:22,001 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:22,003 Please make sure that 'polyply.tests.test_data.struc_build' is included as a package by using 2023-03-03T15:51:22,004 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:22,004 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:22,005 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:22,005 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:22,006 documentation page. 2023-03-03T15:51:22,007 !! 2023-03-03T15:51:22,008 check.warn(importable) 2023-03-03T15:51:22,008 creating build/lib/polyply/tests/test_data 2023-03-03T15:51:22,009 creating build/lib/polyply/tests/test_data/ff 2023-03-03T15:51:22,009 copying polyply/tests/test_data/ff/aminoacids.ff -> build/lib/polyply/tests/test_data/ff 2023-03-03T15:51:22,010 creating build/lib/polyply/tests/test_data/gen_params 2023-03-03T15:51:22,010 creating build/lib/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:22,011 copying polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp -> build/lib/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:22,011 copying polyply/tests/test_data/gen_params/input/PEO.martini.3.itp -> build/lib/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:22,011 copying polyply/tests/test_data/gen_params/input/PPI.ff -> build/lib/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:22,012 copying polyply/tests/test_data/gen_params/input/PPI.json -> build/lib/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:22,012 copying polyply/tests/test_data/gen_params/input/PS.json -> build/lib/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:22,013 copying polyply/tests/test_data/gen_params/input/PS.martini.2.itp -> build/lib/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:22,013 copying polyply/tests/test_data/gen_params/input/removal.ff -> build/lib/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:22,014 copying polyply/tests/test_data/gen_params/input/test.ff -> build/lib/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:22,014 copying polyply/tests/test_data/gen_params/input/test_edge_attr.ff -> build/lib/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:22,015 copying polyply/tests/test_data/gen_params/input/test_edge_attr.json -> build/lib/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:22,015 creating build/lib/polyply/tests/test_data/gen_params/logging 2023-03-03T15:51:22,015 copying polyply/tests/test_data/gen_params/logging/ERROR_block.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2023-03-03T15:51:22,016 copying polyply/tests/test_data/gen_params/logging/ERROR_link.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2023-03-03T15:51:22,016 copying polyply/tests/test_data/gen_params/logging/INFO_block.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2023-03-03T15:51:22,017 copying polyply/tests/test_data/gen_params/logging/INFO_link.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2023-03-03T15:51:22,017 copying polyply/tests/test_data/gen_params/logging/WARNING_block.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2023-03-03T15:51:22,017 copying polyply/tests/test_data/gen_params/logging/WARNING_link.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2023-03-03T15:51:22,018 creating build/lib/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:22,018 copying polyply/tests/test_data/gen_params/output/P3HT_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:22,018 copying polyply/tests/test_data/gen_params/output/PEO_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:22,020 copying polyply/tests/test_data/gen_params/output/PPI_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:22,020 copying polyply/tests/test_data/gen_params/output/PS_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:22,021 copying polyply/tests/test_data/gen_params/output/removal.itp -> build/lib/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:22,022 copying polyply/tests/test_data/gen_params/output/test_edge_attr_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:22,022 copying polyply/tests/test_data/gen_params/output/test_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:22,023 creating build/lib/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:22,023 copying polyply/tests/test_data/gen_params/ref/G3.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:22,024 copying polyply/tests/test_data/gen_params/ref/P3HT_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:22,024 copying polyply/tests/test_data/gen_params/ref/PEO_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:22,024 copying polyply/tests/test_data/gen_params/ref/PS_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:22,025 copying polyply/tests/test_data/gen_params/ref/end.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:22,025 copying polyply/tests/test_data/gen_params/ref/removal.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:22,025 copying polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:22,026 copying polyply/tests/test_data/gen_params/ref/test_rev.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:22,026 creating build/lib/polyply/tests/test_data/gen_seq 2023-03-03T15:51:22,026 creating build/lib/polyply/tests/test_data/gen_seq/input 2023-03-03T15:51:22,027 copying polyply/tests/test_data/gen_seq/input/molecule_0.itp -> build/lib/polyply/tests/test_data/gen_seq/input 2023-03-03T15:51:22,027 creating build/lib/polyply/tests/test_data/gen_seq/output 2023-03-03T15:51:22,027 copying polyply/tests/test_data/gen_seq/output/PEO_PS.json -> build/lib/polyply/tests/test_data/gen_seq/output 2023-03-03T15:51:22,028 copying polyply/tests/test_data/gen_seq/output/PPI.json -> build/lib/polyply/tests/test_data/gen_seq/output 2023-03-03T15:51:22,028 copying polyply/tests/test_data/gen_seq/output/lysoPEG.json -> build/lib/polyply/tests/test_data/gen_seq/output 2023-03-03T15:51:22,028 copying polyply/tests/test_data/gen_seq/output/lyso_PEG.json -> build/lib/polyply/tests/test_data/gen_seq/output 2023-03-03T15:51:22,037 copying polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json -> build/lib/polyply/tests/test_data/gen_seq/output 2023-03-03T15:51:22,041 creating build/lib/polyply/tests/test_data/gen_seq/ref 2023-03-03T15:51:22,042 copying polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2023-03-03T15:51:22,047 copying polyply/tests/test_data/gen_seq/ref/PPI_ref.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2023-03-03T15:51:22,051 copying polyply/tests/test_data/gen_seq/ref/lyso_PEG.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2023-03-03T15:51:22,057 creating build/lib/polyply/tests/test_data/itp 2023-03-03T15:51:22,059 copying polyply/tests/test_data/itp/PEO.itp -> build/lib/polyply/tests/test_data/itp 2023-03-03T15:51:22,063 creating build/lib/polyply/tests/test_data/json 2023-03-03T15:51:22,065 copying polyply/tests/test_data/json/double_branch.json -> build/lib/polyply/tests/test_data/json 2023-03-03T15:51:22,069 copying polyply/tests/test_data/json/fail.json -> build/lib/polyply/tests/test_data/json 2023-03-03T15:51:22,073 copying polyply/tests/test_data/json/hyperbranched.json -> build/lib/polyply/tests/test_data/json 2023-03-03T15:51:22,077 copying polyply/tests/test_data/json/linear.json -> build/lib/polyply/tests/test_data/json 2023-03-03T15:51:22,081 copying polyply/tests/test_data/json/linear_rev.json -> build/lib/polyply/tests/test_data/json 2023-03-03T15:51:22,085 copying polyply/tests/test_data/json/single_branch.json -> build/lib/polyply/tests/test_data/json 2023-03-03T15:51:22,089 creating build/lib/polyply/tests/test_data/library_tests 2023-03-03T15:51:22,090 creating build/lib/polyply/tests/test_data/library_tests/2016H66 2023-03-03T15:51:22,092 creating build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4 2023-03-03T15:51:22,093 creating build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2023-03-03T15:51:22,095 copying polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2023-03-03T15:51:22,100 copying polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2023-03-03T15:51:22,104 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PE 2023-03-03T15:51:22,106 copying polyply/tests/test_data/library_tests/2016H66/PE/PE.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE 2023-03-03T15:51:22,111 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2023-03-03T15:51:22,112 copying polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2023-03-03T15:51:22,117 copying polyply/tests/test_data/library_tests/2016H66/PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2023-03-03T15:51:22,121 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PMA 2023-03-03T15:51:22,123 copying polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA 2023-03-03T15:51:22,128 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2023-03-03T15:51:22,129 copying polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2023-03-03T15:51:22,134 copying polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2023-03-03T15:51:22,139 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PP 2023-03-03T15:51:22,140 copying polyply/tests/test_data/library_tests/2016H66/PP/PP.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP 2023-03-03T15:51:22,145 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2023-03-03T15:51:22,146 copying polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2023-03-03T15:51:22,151 copying polyply/tests/test_data/library_tests/2016H66/PP/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2023-03-03T15:51:22,155 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PS 2023-03-03T15:51:22,157 copying polyply/tests/test_data/library_tests/2016H66/PS/PS.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS 2023-03-03T15:51:22,162 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2023-03-03T15:51:22,164 copying polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2023-03-03T15:51:22,169 copying polyply/tests/test_data/library_tests/2016H66/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2023-03-03T15:51:22,174 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PVA 2023-03-03T15:51:22,177 copying polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA 2023-03-03T15:51:22,182 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2023-03-03T15:51:22,184 copying polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2023-03-03T15:51:22,188 copying polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2023-03-03T15:51:22,193 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6 2023-03-03T15:51:22,193 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT 2023-03-03T15:51:22,195 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2023-03-03T15:51:22,197 copying polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp -> build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2023-03-03T15:51:22,203 copying polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2023-03-03T15:51:22,207 creating build/lib/polyply/tests/test_data/library_tests/martini2 2023-03-03T15:51:22,208 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEL 2023-03-03T15:51:22,210 copying polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL 2023-03-03T15:51:22,215 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2023-03-03T15:51:22,217 copying polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2023-03-03T15:51:22,222 copying polyply/tests/test_data/library_tests/martini2/PEL/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2023-03-03T15:51:22,226 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO 2023-03-03T15:51:22,227 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2023-03-03T15:51:22,229 copying polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2023-03-03T15:51:22,234 copying polyply/tests/test_data/library_tests/martini2/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2023-03-03T15:51:22,238 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE 2023-03-03T15:51:22,240 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE 2023-03-03T15:51:22,244 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2023-03-03T15:51:22,246 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2023-03-03T15:51:22,251 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2023-03-03T15:51:22,255 creating build/lib/polyply/tests/test_data/library_tests/martini2/PS 2023-03-03T15:51:22,255 creating build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2023-03-03T15:51:22,258 copying polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2023-03-03T15:51:22,263 copying polyply/tests/test_data/library_tests/martini2/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2023-03-03T15:51:22,267 creating build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2023-03-03T15:51:22,269 copying polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2023-03-03T15:51:22,285 copying polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2023-03-03T15:51:22,294 creating build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2023-03-03T15:51:22,295 copying polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2023-03-03T15:51:22,300 copying polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2023-03-03T15:51:22,322 creating build/lib/polyply/tests/test_data/library_tests/martini3 2023-03-03T15:51:22,323 creating build/lib/polyply/tests/test_data/library_tests/martini3/CEL 2023-03-03T15:51:22,324 creating build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2023-03-03T15:51:22,327 copying polyply/tests/test_data/library_tests/martini3/CEL/polyply/CEL.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2023-03-03T15:51:22,334 copying polyply/tests/test_data/library_tests/martini3/CEL/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2023-03-03T15:51:22,338 creating build/lib/polyply/tests/test_data/library_tests/martini3/DEX 2023-03-03T15:51:22,339 creating build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2023-03-03T15:51:22,341 copying polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2023-03-03T15:51:22,346 copying polyply/tests/test_data/library_tests/martini3/DEX/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2023-03-03T15:51:22,350 creating build/lib/polyply/tests/test_data/library_tests/martini3/P3HT 2023-03-03T15:51:22,351 creating build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2023-03-03T15:51:22,354 copying polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2023-03-03T15:51:22,358 copying polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2023-03-03T15:51:22,362 creating build/lib/polyply/tests/test_data/library_tests/martini3/PDMS 2023-03-03T15:51:22,363 creating build/lib/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2023-03-03T15:51:22,365 copying polyply/tests/test_data/library_tests/martini3/PDMS/polyply/PDMS.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2023-03-03T15:51:22,370 copying polyply/tests/test_data/library_tests/martini3/PDMS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2023-03-03T15:51:22,374 creating build/lib/polyply/tests/test_data/library_tests/martini3/PE 2023-03-03T15:51:22,375 creating build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2023-03-03T15:51:22,378 copying polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2023-03-03T15:51:22,383 copying polyply/tests/test_data/library_tests/martini3/PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2023-03-03T15:51:22,387 creating build/lib/polyply/tests/test_data/library_tests/martini3/PEO 2023-03-03T15:51:22,388 creating build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2023-03-03T15:51:22,390 copying polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2023-03-03T15:51:22,394 copying polyply/tests/test_data/library_tests/martini3/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2023-03-03T15:51:22,399 creating build/lib/polyply/tests/test_data/library_tests/martini3/PPE 2023-03-03T15:51:22,400 creating build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2023-03-03T15:51:22,402 copying polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2023-03-03T15:51:22,408 copying polyply/tests/test_data/library_tests/martini3/PPE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2023-03-03T15:51:22,412 creating build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2023-03-03T15:51:22,414 copying polyply/tests/test_data/library_tests/martini3/PROT/init.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2023-03-03T15:51:22,420 copying polyply/tests/test_data/library_tests/martini3/PROT/lysozyme_seq.json -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2023-03-03T15:51:22,426 creating build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2023-03-03T15:51:22,428 copying polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2023-03-03T15:51:22,434 copying polyply/tests/test_data/library_tests/martini3/PROT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2023-03-03T15:51:22,438 creating build/lib/polyply/tests/test_data/library_tests/martini3/PS 2023-03-03T15:51:22,439 creating build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2023-03-03T15:51:22,442 copying polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2023-03-03T15:51:22,446 copying polyply/tests/test_data/library_tests/martini3/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2023-03-03T15:51:22,451 creating build/lib/polyply/tests/test_data/library_tests/martini3/PTMA 2023-03-03T15:51:22,452 creating build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2023-03-03T15:51:22,454 copying polyply/tests/test_data/library_tests/martini3/PTMA/polyply/PTMA.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2023-03-03T15:51:22,460 copying polyply/tests/test_data/library_tests/martini3/PTMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2023-03-03T15:51:22,464 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen 2023-03-03T15:51:22,465 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO 2023-03-03T15:51:22,466 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2023-03-03T15:51:22,469 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2023-03-03T15:51:22,475 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2023-03-03T15:51:22,479 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1 2023-03-03T15:51:22,480 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2023-03-03T15:51:22,483 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2023-03-03T15:51:22,493 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2023-03-03T15:51:22,497 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2023-03-03T15:51:22,499 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2023-03-03T15:51:22,514 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2023-03-03T15:51:22,519 creating build/lib/polyply/tests/test_data/polyply 2023-03-03T15:51:22,521 copying polyply/tests/test_data/polyply/P3HT.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-03-03T15:51:22,525 copying polyply/tests/test_data/polyply/PDADMA.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-03-03T15:51:22,530 copying polyply/tests/test_data/polyply/PE.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-03-03T15:51:22,534 copying polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-03-03T15:51:22,539 copying polyply/tests/test_data/polyply/PEO.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-03-03T15:51:22,543 copying polyply/tests/test_data/polyply/PEO.martini.3.itp -> build/lib/polyply/tests/test_data/polyply 2023-03-03T15:51:22,547 copying polyply/tests/test_data/polyply/PP.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-03-03T15:51:22,551 copying polyply/tests/test_data/polyply/PS.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-03-03T15:51:22,555 copying polyply/tests/test_data/polyply/PSS.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-03-03T15:51:22,560 creating build/lib/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:22,561 copying polyply/tests/test_data/simple_seq_files/test.fasta -> build/lib/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:22,566 copying polyply/tests/test_data/simple_seq_files/test.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:22,570 copying polyply/tests/test_data/simple_seq_files/test.txt -> build/lib/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:22,575 copying polyply/tests/test_data/simple_seq_files/test_RNA.fasta -> build/lib/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:22,579 copying polyply/tests/test_data/simple_seq_files/test_RNA.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:22,583 copying polyply/tests/test_data/simple_seq_files/test_circle.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:22,587 copying polyply/tests/test_data/simple_seq_files/test_fail.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:22,591 copying polyply/tests/test_data/simple_seq_files/test_protein.fasta -> build/lib/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:22,595 creating build/lib/polyply/tests/test_data/struc_build 2023-03-03T15:51:22,597 copying polyply/tests/test_data/struc_build/PEO.itp -> build/lib/polyply/tests/test_data/struc_build 2023-03-03T15:51:22,602 copying polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp -> build/lib/polyply/tests/test_data/struc_build 2023-03-03T15:51:22,610 copying polyply/tests/test_data/struc_build/system.top -> build/lib/polyply/tests/test_data/struc_build 2023-03-03T15:51:22,614 creating build/lib/polyply/tests/test_data/topology_test 2023-03-03T15:51:22,616 copying polyply/tests/test_data/topology_test/W.itp -> build/lib/polyply/tests/test_data/topology_test 2023-03-03T15:51:22,624 copying polyply/tests/test_data/topology_test/cog.gro -> build/lib/polyply/tests/test_data/topology_test 2023-03-03T15:51:22,628 copying polyply/tests/test_data/topology_test/cog_missing.gro -> build/lib/polyply/tests/test_data/topology_test 2023-03-03T15:51:22,633 copying polyply/tests/test_data/topology_test/complete.gro -> build/lib/polyply/tests/test_data/topology_test 2023-03-03T15:51:22,637 copying polyply/tests/test_data/topology_test/fail.gro -> build/lib/polyply/tests/test_data/topology_test 2023-03-03T15:51:22,641 copying polyply/tests/test_data/topology_test/ffnonbonded.itp -> build/lib/polyply/tests/test_data/topology_test 2023-03-03T15:51:22,667 copying polyply/tests/test_data/topology_test/meta.gro -> build/lib/polyply/tests/test_data/topology_test 2023-03-03T15:51:22,671 copying polyply/tests/test_data/topology_test/molecule_0.itp -> build/lib/polyply/tests/test_data/topology_test 2023-03-03T15:51:22,681 copying polyply/tests/test_data/topology_test/pdb.top -> build/lib/polyply/tests/test_data/topology_test 2023-03-03T15:51:22,686 copying polyply/tests/test_data/topology_test/system.top -> build/lib/polyply/tests/test_data/topology_test 2023-03-03T15:51:22,690 copying polyply/tests/test_data/topology_test/test.gro -> build/lib/polyply/tests/test_data/topology_test 2023-03-03T15:51:22,694 copying polyply/tests/test_data/topology_test/test.itp -> build/lib/polyply/tests/test_data/topology_test 2023-03-03T15:51:22,698 copying polyply/tests/test_data/topology_test/test.pdb -> build/lib/polyply/tests/test_data/topology_test 2023-03-03T15:51:22,709 creating build/lib/polyply/data/2016H66 2023-03-03T15:51:22,711 copying polyply/data/2016H66/polyether_blocks.ff -> build/lib/polyply/data/2016H66 2023-03-03T15:51:22,715 copying polyply/data/2016H66/polyvinyl_blocks.ff -> build/lib/polyply/data/2016H66 2023-03-03T15:51:22,720 copying polyply/data/2016H66/terminal_blocks.ff -> build/lib/polyply/data/2016H66 2023-03-03T15:51:22,724 copying polyply/data/2016H66/polyether_links.ff -> build/lib/polyply/data/2016H66 2023-03-03T15:51:22,729 copying polyply/data/2016H66/citation.bib -> build/lib/polyply/data/2016H66 2023-03-03T15:51:22,733 copying polyply/data/2016H66/polyvinyl_links.ff -> build/lib/polyply/data/2016H66 2023-03-03T15:51:22,738 copying polyply/data/2016H66/chiral_links.ff -> build/lib/polyply/data/2016H66 2023-03-03T15:51:22,743 copying polyply/data/2016H66/polyether_polyvinyl_links.ff -> build/lib/polyply/data/2016H66 2023-03-03T15:51:22,748 creating build/lib/polyply/data/gromos53A6 2023-03-03T15:51:22,749 copying polyply/data/gromos53A6/links.ff -> build/lib/polyply/data/gromos53A6 2023-03-03T15:51:22,754 copying polyply/data/gromos53A6/P3HT.gromos.53A6.ff -> build/lib/polyply/data/gromos53A6 2023-03-03T15:51:22,759 copying polyply/data/gromos53A6/citations.bib -> build/lib/polyply/data/gromos53A6 2023-03-03T15:51:22,763 copying polyply/data/gromos53A6/Hter.ff -> build/lib/polyply/data/gromos53A6 2023-03-03T15:51:22,766 creating build/lib/polyply/data/oplsaaLigParGen 2023-03-03T15:51:22,769 copying polyply/data/oplsaaLigParGen/links.ff -> build/lib/polyply/data/oplsaaLigParGen 2023-03-03T15:51:22,774 copying polyply/data/oplsaaLigParGen/OHter.ff -> build/lib/polyply/data/oplsaaLigParGen 2023-03-03T15:51:22,778 copying polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff -> build/lib/polyply/data/oplsaaLigParGen 2023-03-03T15:51:22,782 copying polyply/data/oplsaaLigParGen/citations.bib -> build/lib/polyply/data/oplsaaLigParGen 2023-03-03T15:51:22,786 creating build/lib/polyply/data/martini3 2023-03-03T15:51:22,788 copying polyply/data/martini3/P3HT.martini3.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,792 copying polyply/data/martini3/PVA.martini3.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,796 copying polyply/data/martini3/dextran.martini3.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,801 copying polyply/data/martini3/PMA.martini3.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,805 copying polyply/data/martini3/cellulose.martini3.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,809 copying polyply/data/martini3/PS.martini3.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,813 copying polyply/data/martini3/PEL_link.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,817 copying polyply/data/martini3/PDMS.martini3.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,821 copying polyply/data/martini3/aminoacids.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,827 copying polyply/data/martini3/PTMA.martini3.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,831 copying polyply/data/martini3/citations.bib -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,835 copying polyply/data/martini3/PE.martini3.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,839 copying polyply/data/martini3/PS_PEO_link.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,844 copying polyply/data/martini3/PMMA.martini3.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,848 copying polyply/data/martini3/PEO.martini3.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,852 copying polyply/data/martini3/PSS.martini3.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,856 copying polyply/data/martini3/PPE.martini3.ff -> build/lib/polyply/data/martini3 2023-03-03T15:51:22,861 creating build/lib/polyply/data/parmbsc1 2023-03-03T15:51:22,862 copying polyply/data/parmbsc1/dna_final.ff -> build/lib/polyply/data/parmbsc1 2023-03-03T15:51:22,871 copying polyply/data/parmbsc1/citations.bib -> build/lib/polyply/data/parmbsc1 2023-03-03T15:51:22,875 creating build/lib/polyply/data/martini3_beta 2023-03-03T15:51:22,878 copying polyply/data/martini3_beta/citations.bib -> build/lib/polyply/data/martini3_beta 2023-03-03T15:51:22,883 copying polyply/data/martini3_beta/PEO.martini.3.itp -> build/lib/polyply/data/martini3_beta 2023-03-03T15:51:22,887 creating build/lib/polyply/data/martini2 2023-03-03T15:51:22,890 copying polyply/data/martini2/PSS.martini.2.itp -> build/lib/polyply/data/martini2 2023-03-03T15:51:22,894 copying polyply/data/martini2/PE.martini.2.itp -> build/lib/polyply/data/martini2 2023-03-03T15:51:22,898 copying polyply/data/martini2/links.ff -> build/lib/polyply/data/martini2 2023-03-03T15:51:22,902 copying polyply/data/martini2/PS.martini.2.itp -> build/lib/polyply/data/martini2 2023-03-03T15:51:22,906 copying polyply/data/martini2/PP.martini.2.itp -> build/lib/polyply/data/martini2 2023-03-03T15:51:22,910 copying polyply/data/martini2/DNA_M2.ff -> build/lib/polyply/data/martini2 2023-03-03T15:51:22,915 copying polyply/data/martini2/PDADMA.martini.2.itp -> build/lib/polyply/data/martini2 2023-03-03T15:51:22,920 copying polyply/data/martini2/citations.bib -> build/lib/polyply/data/martini2 2023-03-03T15:51:22,924 copying polyply/data/martini2/PEO.martini.2.itp -> build/lib/polyply/data/martini2 2023-03-03T15:51:22,928 copying polyply/data/martini2/P3HT.martini.2.itp -> build/lib/polyply/data/martini2 2023-03-03T15:51:23,100 running build_scripts 2023-03-03T15:51:23,101 creating build/scripts-3.7 2023-03-03T15:51:23,103 copying and adjusting bin/polyply -> build/scripts-3.7 2023-03-03T15:51:23,107 changing mode of build/scripts-3.7/polyply from 644 to 755 2023-03-03T15:51:23,109 installing to build/bdist.linux-armv7l/wheel 2023-03-03T15:51:23,109 running install 2023-03-03T15:51:23,225 [pbr] Generating AUTHORS 2023-03-03T15:51:23,252 [pbr] AUTHORS complete (0.0s) 2023-03-03T15:51:23,254 running install_lib 2023-03-03T15:51:23,275 creating build/bdist.linux-armv7l 2023-03-03T15:51:23,275 creating build/bdist.linux-armv7l/wheel 2023-03-03T15:51:23,279 creating build/bdist.linux-armv7l/wheel/polyply 2023-03-03T15:51:23,283 creating build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,285 copying build/lib/polyply/tests/test_gen_coords.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,290 copying build/lib/polyply/tests/test_itp_files.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,295 copying build/lib/polyply/tests/test_backmap.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,299 copying build/lib/polyply/tests/test_random_walk.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,304 copying build/lib/polyply/tests/test_meta_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,308 copying build/lib/polyply/tests/test_nb_engine.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,313 copying build/lib/polyply/tests/test_lib_files.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,318 copying build/lib/polyply/tests/test_ff_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,322 copying build/lib/polyply/tests/test_restraints.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,326 copying build/lib/polyply/tests/example_fixtures.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,330 copying build/lib/polyply/tests/test_persistence.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,334 copying build/lib/polyply/tests/test_gen_coords_logic.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,338 copying build/lib/polyply/tests/test_linalg.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,343 copying build/lib/polyply/tests/test_build_file_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,348 copying build/lib/polyply/tests/test_polyply_input.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:23,353 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data 2023-03-03T15:51:23,356 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests 2023-03-03T15:51:23,360 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66 2023-03-03T15:51:23,363 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA 2023-03-03T15:51:23,365 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA 2023-03-03T15:51:23,371 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2023-03-03T15:51:23,372 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2023-03-03T15:51:23,377 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2023-03-03T15:51:23,382 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4 2023-03-03T15:51:23,385 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2023-03-03T15:51:23,387 copying build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2023-03-03T15:51:23,392 copying build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2023-03-03T15:51:23,397 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA 2023-03-03T15:51:23,399 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA 2023-03-03T15:51:23,404 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2023-03-03T15:51:23,406 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2023-03-03T15:51:23,409 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2023-03-03T15:51:23,415 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP 2023-03-03T15:51:23,417 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2023-03-03T15:51:23,420 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2023-03-03T15:51:23,424 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2023-03-03T15:51:23,428 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/PP.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP 2023-03-03T15:51:23,433 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS 2023-03-03T15:51:23,434 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS 2023-03-03T15:51:23,440 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2023-03-03T15:51:23,441 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2023-03-03T15:51:23,445 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2023-03-03T15:51:23,451 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE 2023-03-03T15:51:23,452 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/PE.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE 2023-03-03T15:51:23,457 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2023-03-03T15:51:23,459 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2023-03-03T15:51:23,463 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2023-03-03T15:51:23,468 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6 2023-03-03T15:51:23,471 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT 2023-03-03T15:51:23,474 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2023-03-03T15:51:23,476 copying build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2023-03-03T15:51:23,480 copying build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2023-03-03T15:51:23,487 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen 2023-03-03T15:51:23,489 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO 2023-03-03T15:51:23,492 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2023-03-03T15:51:23,494 copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2023-03-03T15:51:23,499 copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2023-03-03T15:51:23,505 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3 2023-03-03T15:51:23,507 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT 2023-03-03T15:51:23,509 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/lysozyme_seq.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT 2023-03-03T15:51:23,514 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/init.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT 2023-03-03T15:51:23,521 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2023-03-03T15:51:23,522 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2023-03-03T15:51:23,526 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2023-03-03T15:51:23,533 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT 2023-03-03T15:51:23,536 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2023-03-03T15:51:23,538 copying build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2023-03-03T15:51:23,542 copying build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2023-03-03T15:51:23,546 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA 2023-03-03T15:51:23,549 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2023-03-03T15:51:23,551 copying build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2023-03-03T15:51:23,555 copying build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply/PTMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2023-03-03T15:51:23,560 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL 2023-03-03T15:51:23,563 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2023-03-03T15:51:23,565 copying build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2023-03-03T15:51:23,568 copying build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply/CEL.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2023-03-03T15:51:23,576 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX 2023-03-03T15:51:23,578 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2023-03-03T15:51:23,580 copying build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2023-03-03T15:51:23,584 copying build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2023-03-03T15:51:23,589 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO 2023-03-03T15:51:23,592 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2023-03-03T15:51:23,594 copying build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2023-03-03T15:51:23,598 copying build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2023-03-03T15:51:23,602 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PDMS 2023-03-03T15:51:23,605 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2023-03-03T15:51:23,607 copying build/lib/polyply/tests/test_data/library_tests/martini3/PDMS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2023-03-03T15:51:23,611 copying build/lib/polyply/tests/test_data/library_tests/martini3/PDMS/polyply/PDMS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2023-03-03T15:51:23,616 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS 2023-03-03T15:51:23,619 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2023-03-03T15:51:23,621 copying build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2023-03-03T15:51:23,625 copying build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2023-03-03T15:51:23,629 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE 2023-03-03T15:51:23,632 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2023-03-03T15:51:23,634 copying build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2023-03-03T15:51:23,638 copying build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2023-03-03T15:51:23,643 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE 2023-03-03T15:51:23,645 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2023-03-03T15:51:23,647 copying build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2023-03-03T15:51:23,651 copying build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2023-03-03T15:51:23,657 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1 2023-03-03T15:51:23,659 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2023-03-03T15:51:23,661 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2023-03-03T15:51:23,672 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2023-03-03T15:51:23,674 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2023-03-03T15:51:23,678 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2023-03-03T15:51:23,701 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2023-03-03T15:51:23,706 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2 2023-03-03T15:51:23,710 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE 2023-03-03T15:51:23,712 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE 2023-03-03T15:51:23,718 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2023-03-03T15:51:23,720 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2023-03-03T15:51:23,725 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2023-03-03T15:51:23,731 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2023-03-03T15:51:23,733 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2023-03-03T15:51:23,749 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2023-03-03T15:51:23,751 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2023-03-03T15:51:23,755 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2023-03-03T15:51:23,782 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2023-03-03T15:51:23,788 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL 2023-03-03T15:51:23,791 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL 2023-03-03T15:51:23,796 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2023-03-03T15:51:23,798 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2023-03-03T15:51:23,803 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2023-03-03T15:51:23,809 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO 2023-03-03T15:51:23,813 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2023-03-03T15:51:23,815 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2023-03-03T15:51:23,820 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2023-03-03T15:51:23,826 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS 2023-03-03T15:51:23,829 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2023-03-03T15:51:23,832 copying build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2023-03-03T15:51:23,836 copying build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2023-03-03T15:51:23,842 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2023-03-03T15:51:23,844 copying build/lib/polyply/tests/test_data/json/double_branch.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2023-03-03T15:51:23,848 copying build/lib/polyply/tests/test_data/json/single_branch.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2023-03-03T15:51:23,853 copying build/lib/polyply/tests/test_data/json/hyperbranched.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2023-03-03T15:51:23,857 copying build/lib/polyply/tests/test_data/json/fail.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2023-03-03T15:51:23,861 copying build/lib/polyply/tests/test_data/json/linear_rev.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2023-03-03T15:51:23,865 copying build/lib/polyply/tests/test_data/json/linear.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2023-03-03T15:51:23,870 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params 2023-03-03T15:51:23,874 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:23,877 copying build/lib/polyply/tests/test_data/gen_params/input/test_edge_attr.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:23,881 copying build/lib/polyply/tests/test_data/gen_params/input/PPI.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:23,885 copying build/lib/polyply/tests/test_data/gen_params/input/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:23,889 copying build/lib/polyply/tests/test_data/gen_params/input/PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:23,893 copying build/lib/polyply/tests/test_data/gen_params/input/test_edge_attr.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:23,898 copying build/lib/polyply/tests/test_data/gen_params/input/PPI.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:23,902 copying build/lib/polyply/tests/test_data/gen_params/input/removal.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:23,906 copying build/lib/polyply/tests/test_data/gen_params/input/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:23,910 copying build/lib/polyply/tests/test_data/gen_params/input/test.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:23,915 copying build/lib/polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-03-03T15:51:23,920 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2023-03-03T15:51:23,923 copying build/lib/polyply/tests/test_data/gen_params/logging/INFO_block.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2023-03-03T15:51:23,928 copying build/lib/polyply/tests/test_data/gen_params/logging/WARNING_link.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2023-03-03T15:51:23,932 copying build/lib/polyply/tests/test_data/gen_params/logging/ERROR_link.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2023-03-03T15:51:23,936 copying build/lib/polyply/tests/test_data/gen_params/logging/ERROR_block.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2023-03-03T15:51:23,940 copying build/lib/polyply/tests/test_data/gen_params/logging/WARNING_block.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2023-03-03T15:51:23,945 copying build/lib/polyply/tests/test_data/gen_params/logging/INFO_link.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2023-03-03T15:51:23,950 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:23,952 copying build/lib/polyply/tests/test_data/gen_params/output/PEO_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:23,957 copying build/lib/polyply/tests/test_data/gen_params/output/PPI_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:23,961 copying build/lib/polyply/tests/test_data/gen_params/output/removal.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:23,965 copying build/lib/polyply/tests/test_data/gen_params/output/P3HT_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:23,969 copying build/lib/polyply/tests/test_data/gen_params/output/test_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:23,972 copying build/lib/polyply/tests/test_data/gen_params/output/test_edge_attr_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:23,976 copying build/lib/polyply/tests/test_data/gen_params/output/PS_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2023-03-03T15:51:23,982 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:23,983 copying build/lib/polyply/tests/test_data/gen_params/ref/P3HT_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:23,988 copying build/lib/polyply/tests/test_data/gen_params/ref/removal.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:23,992 copying build/lib/polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:23,995 copying build/lib/polyply/tests/test_data/gen_params/ref/PEO_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:23,999 copying build/lib/polyply/tests/test_data/gen_params/ref/PS_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:24,003 copying build/lib/polyply/tests/test_data/gen_params/ref/G3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:24,007 copying build/lib/polyply/tests/test_data/gen_params/ref/end.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:24,010 copying build/lib/polyply/tests/test_data/gen_params/ref/test_rev.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-03-03T15:51:24,015 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2023-03-03T15:51:24,016 copying build/lib/polyply/tests/test_data/struc_build/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2023-03-03T15:51:24,021 copying build/lib/polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2023-03-03T15:51:24,028 copying build/lib/polyply/tests/test_data/struc_build/system.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2023-03-03T15:51:24,033 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-03-03T15:51:24,035 copying build/lib/polyply/tests/test_data/topology_test/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-03-03T15:51:24,061 copying build/lib/polyply/tests/test_data/topology_test/pdb.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-03-03T15:51:24,064 copying build/lib/polyply/tests/test_data/topology_test/test.pdb -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-03-03T15:51:24,072 copying build/lib/polyply/tests/test_data/topology_test/W.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-03-03T15:51:24,076 copying build/lib/polyply/tests/test_data/topology_test/test.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-03-03T15:51:24,079 copying build/lib/polyply/tests/test_data/topology_test/cog.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-03-03T15:51:24,083 copying build/lib/polyply/tests/test_data/topology_test/fail.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-03-03T15:51:24,086 copying build/lib/polyply/tests/test_data/topology_test/molecule_0.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-03-03T15:51:24,096 copying build/lib/polyply/tests/test_data/topology_test/meta.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-03-03T15:51:24,100 copying build/lib/polyply/tests/test_data/topology_test/test.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-03-03T15:51:24,103 copying build/lib/polyply/tests/test_data/topology_test/cog_missing.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-03-03T15:51:24,107 copying build/lib/polyply/tests/test_data/topology_test/system.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-03-03T15:51:24,111 copying build/lib/polyply/tests/test_data/topology_test/complete.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-03-03T15:51:24,115 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/ff 2023-03-03T15:51:24,117 copying build/lib/polyply/tests/test_data/ff/aminoacids.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/ff 2023-03-03T15:51:24,124 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq 2023-03-03T15:51:24,127 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/input 2023-03-03T15:51:24,129 copying build/lib/polyply/tests/test_data/gen_seq/input/molecule_0.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/input 2023-03-03T15:51:24,137 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2023-03-03T15:51:24,139 copying build/lib/polyply/tests/test_data/gen_seq/output/PPI.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2023-03-03T15:51:24,143 copying build/lib/polyply/tests/test_data/gen_seq/output/lysoPEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2023-03-03T15:51:24,152 copying build/lib/polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2023-03-03T15:51:24,156 copying build/lib/polyply/tests/test_data/gen_seq/output/PEO_PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2023-03-03T15:51:24,159 copying build/lib/polyply/tests/test_data/gen_seq/output/lyso_PEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2023-03-03T15:51:24,170 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2023-03-03T15:51:24,171 copying build/lib/polyply/tests/test_data/gen_seq/ref/PPI_ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2023-03-03T15:51:24,175 copying build/lib/polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2023-03-03T15:51:24,179 copying build/lib/polyply/tests/test_data/gen_seq/ref/lyso_PEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2023-03-03T15:51:24,187 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:24,189 copying build/lib/polyply/tests/test_data/simple_seq_files/test_fail.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:24,193 copying build/lib/polyply/tests/test_data/simple_seq_files/test_circle.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:24,196 copying build/lib/polyply/tests/test_data/simple_seq_files/test_RNA.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:24,200 copying build/lib/polyply/tests/test_data/simple_seq_files/test.txt -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:24,204 copying build/lib/polyply/tests/test_data/simple_seq_files/test.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:24,207 copying build/lib/polyply/tests/test_data/simple_seq_files/test.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:24,211 copying build/lib/polyply/tests/test_data/simple_seq_files/test_protein.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:24,214 copying build/lib/polyply/tests/test_data/simple_seq_files/test_RNA.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-03-03T15:51:24,219 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-03-03T15:51:24,221 copying build/lib/polyply/tests/test_data/polyply/PSS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-03-03T15:51:24,225 copying build/lib/polyply/tests/test_data/polyply/PE.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-03-03T15:51:24,229 copying build/lib/polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-03-03T15:51:24,232 copying build/lib/polyply/tests/test_data/polyply/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-03-03T15:51:24,236 copying build/lib/polyply/tests/test_data/polyply/PP.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-03-03T15:51:24,239 copying build/lib/polyply/tests/test_data/polyply/PDADMA.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-03-03T15:51:24,243 copying build/lib/polyply/tests/test_data/polyply/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-03-03T15:51:24,247 copying build/lib/polyply/tests/test_data/polyply/PEO.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-03-03T15:51:24,250 copying build/lib/polyply/tests/test_data/polyply/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-03-03T15:51:24,255 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/itp 2023-03-03T15:51:24,257 copying build/lib/polyply/tests/test_data/itp/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/itp 2023-03-03T15:51:24,261 copying build/lib/polyply/tests/test_topology.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,266 copying build/lib/polyply/tests/test_graph_utils.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,270 copying build/lib/polyply/tests/test_generate_templates.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,274 copying build/lib/polyply/tests/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,278 copying build/lib/polyply/tests/test_load_library.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,282 copying build/lib/polyply/tests/test_map_to_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,286 copying build/lib/polyply/tests/test_build_system.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,290 copying build/lib/polyply/tests/test_gen_params.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,295 copying build/lib/polyply/tests/test_gen_seq.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,299 copying build/lib/polyply/tests/test_logging.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,303 copying build/lib/polyply/tests/test_optimize_geometry.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,307 copying build/lib/polyply/tests/test_simple_seq_parsers.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,311 copying build/lib/polyply/tests/test_top_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,316 copying build/lib/polyply/tests/test_annotate_lingads.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,320 copying build/lib/polyply/tests/test_vs_builder.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,324 copying build/lib/polyply/tests/test_apply_links.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,329 copying build/lib/polyply/tests/test_residue_check.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-03-03T15:51:24,335 creating build/bdist.linux-armv7l/wheel/polyply/data 2023-03-03T15:51:24,338 creating build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-03-03T15:51:24,340 copying build/lib/polyply/data/2016H66/polyether_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-03-03T15:51:24,344 copying build/lib/polyply/data/2016H66/polyvinyl_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-03-03T15:51:24,349 copying build/lib/polyply/data/2016H66/terminal_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-03-03T15:51:24,352 copying build/lib/polyply/data/2016H66/polyether_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-03-03T15:51:24,356 copying build/lib/polyply/data/2016H66/citation.bib -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-03-03T15:51:24,360 copying build/lib/polyply/data/2016H66/polyvinyl_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-03-03T15:51:24,364 copying build/lib/polyply/data/2016H66/chiral_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-03-03T15:51:24,368 copying build/lib/polyply/data/2016H66/polyether_polyvinyl_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-03-03T15:51:24,373 creating build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2023-03-03T15:51:24,375 copying build/lib/polyply/data/gromos53A6/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2023-03-03T15:51:24,379 copying build/lib/polyply/data/gromos53A6/P3HT.gromos.53A6.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2023-03-03T15:51:24,383 copying build/lib/polyply/data/gromos53A6/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2023-03-03T15:51:24,387 copying build/lib/polyply/data/gromos53A6/Hter.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2023-03-03T15:51:24,391 creating build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2023-03-03T15:51:24,393 copying build/lib/polyply/data/oplsaaLigParGen/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2023-03-03T15:51:24,398 copying build/lib/polyply/data/oplsaaLigParGen/OHter.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2023-03-03T15:51:24,401 copying build/lib/polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2023-03-03T15:51:24,405 copying build/lib/polyply/data/oplsaaLigParGen/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2023-03-03T15:51:24,410 creating build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,411 copying build/lib/polyply/data/martini3/P3HT.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,415 copying build/lib/polyply/data/martini3/PVA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,419 copying build/lib/polyply/data/martini3/dextran.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,422 copying build/lib/polyply/data/martini3/PMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,425 copying build/lib/polyply/data/martini3/cellulose.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,429 copying build/lib/polyply/data/martini3/PS.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,432 copying build/lib/polyply/data/martini3/PEL_link.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,436 copying build/lib/polyply/data/martini3/PDMS.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,439 copying build/lib/polyply/data/martini3/aminoacids.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,444 copying build/lib/polyply/data/martini3/PTMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,448 copying build/lib/polyply/data/martini3/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,451 copying build/lib/polyply/data/martini3/PE.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,455 copying build/lib/polyply/data/martini3/PS_PEO_link.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,458 copying build/lib/polyply/data/martini3/PMMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,462 copying build/lib/polyply/data/martini3/PEO.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,465 copying build/lib/polyply/data/martini3/PSS.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,469 copying build/lib/polyply/data/martini3/PPE.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-03-03T15:51:24,474 creating build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2023-03-03T15:51:24,476 copying build/lib/polyply/data/parmbsc1/dna_final.ff -> build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2023-03-03T15:51:24,483 copying build/lib/polyply/data/parmbsc1/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2023-03-03T15:51:24,486 copying build/lib/polyply/data/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/data 2023-03-03T15:51:24,491 creating build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2023-03-03T15:51:24,492 copying build/lib/polyply/data/martini3_beta/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2023-03-03T15:51:24,496 copying build/lib/polyply/data/martini3_beta/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2023-03-03T15:51:24,501 creating build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-03-03T15:51:24,502 copying build/lib/polyply/data/martini2/PSS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-03-03T15:51:24,506 copying build/lib/polyply/data/martini2/PE.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-03-03T15:51:24,510 copying build/lib/polyply/data/martini2/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-03-03T15:51:24,513 copying build/lib/polyply/data/martini2/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-03-03T15:51:24,517 copying build/lib/polyply/data/martini2/PP.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-03-03T15:51:24,520 copying build/lib/polyply/data/martini2/DNA_M2.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-03-03T15:51:24,524 copying build/lib/polyply/data/martini2/PDADMA.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-03-03T15:51:24,528 copying build/lib/polyply/data/martini2/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-03-03T15:51:24,531 copying build/lib/polyply/data/martini2/PEO.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-03-03T15:51:24,535 copying build/lib/polyply/data/martini2/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-03-03T15:51:24,540 creating build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,542 copying build/lib/polyply/src/simple_seq_parsers.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,547 copying build/lib/polyply/src/apply_links.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,552 copying build/lib/polyply/src/ff_parser_sub.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,555 copying build/lib/polyply/src/linalg_functions.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,559 copying build/lib/polyply/src/nonbond_engine.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,564 copying build/lib/polyply/src/persistence.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,568 copying build/lib/polyply/src/virtual_site_builder.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,573 copying build/lib/polyply/src/restraints.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,578 copying build/lib/polyply/src/top_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,583 copying build/lib/polyply/src/load_library.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,587 copying build/lib/polyply/src/backmap.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,591 copying build/lib/polyply/src/gen_seq.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,596 copying build/lib/polyply/src/annotate_ligands.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,600 copying build/lib/polyply/src/build_system.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,604 copying build/lib/polyply/src/topology.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,609 copying build/lib/polyply/src/map_to_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,613 copying build/lib/polyply/src/graph_utils.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,618 copying build/lib/polyply/src/gen_coords.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,622 copying build/lib/polyply/src/build_file_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,627 copying build/lib/polyply/src/apply_modifications.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,630 copying build/lib/polyply/src/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,633 copying build/lib/polyply/src/polyply_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,637 copying build/lib/polyply/src/processor.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,641 copying build/lib/polyply/src/check_residue_equivalence.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,644 copying build/lib/polyply/src/random_walk.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,649 copying build/lib/polyply/src/generate_templates.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,653 copying build/lib/polyply/src/logging.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,657 copying build/lib/polyply/src/minimizer.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,661 copying build/lib/polyply/src/gen_itp.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,665 copying build/lib/polyply/src/meta_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-03-03T15:51:24,670 copying build/lib/polyply/__init__.py -> build/bdist.linux-armv7l/wheel/polyply 2023-03-03T15:51:24,674 running install_egg_info 2023-03-03T15:51:24,688 Copying polyply.egg-info to build/bdist.linux-armv7l/wheel/polyply-1.5.0-py3.7.egg-info 2023-03-03T15:51:24,716 running install_scripts 2023-03-03T15:51:24,719 creating build/bdist.linux-armv7l/wheel/polyply-1.5.0.data 2023-03-03T15:51:24,722 creating build/bdist.linux-armv7l/wheel/polyply-1.5.0.data/scripts 2023-03-03T15:51:24,724 copying build/scripts-3.7/polyply -> build/bdist.linux-armv7l/wheel/polyply-1.5.0.data/scripts 2023-03-03T15:51:24,729 changing mode of build/bdist.linux-armv7l/wheel/polyply-1.5.0.data/scripts/polyply to 755 2023-03-03T15:51:24,776 creating build/bdist.linux-armv7l/wheel/polyply-1.5.0.dist-info/WHEEL 2023-03-03T15:51:24,782 creating '/tmp/pip-wheel-pnbivjkh/.tmp-1unps1c0/polyply-1.5.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-03-03T15:51:24,787 adding 'polyply/__init__.py' 2023-03-03T15:51:24,792 adding 'polyply/data/__init__.py' 2023-03-03T15:51:24,795 adding 'polyply/data/2016H66/chiral_links.ff' 2023-03-03T15:51:24,798 adding 'polyply/data/2016H66/citation.bib' 2023-03-03T15:51:24,800 adding 'polyply/data/2016H66/polyether_blocks.ff' 2023-03-03T15:51:24,803 adding 'polyply/data/2016H66/polyether_links.ff' 2023-03-03T15:51:24,806 adding 'polyply/data/2016H66/polyether_polyvinyl_links.ff' 2023-03-03T15:51:24,810 adding 'polyply/data/2016H66/polyvinyl_blocks.ff' 2023-03-03T15:51:24,813 adding 'polyply/data/2016H66/polyvinyl_links.ff' 2023-03-03T15:51:24,816 adding 'polyply/data/2016H66/terminal_blocks.ff' 2023-03-03T15:51:24,819 adding 'polyply/data/gromos53A6/Hter.ff' 2023-03-03T15:51:24,823 adding 'polyply/data/gromos53A6/P3HT.gromos.53A6.ff' 2023-03-03T15:51:24,825 adding 'polyply/data/gromos53A6/citations.bib' 2023-03-03T15:51:24,828 adding 'polyply/data/gromos53A6/links.ff' 2023-03-03T15:51:24,833 adding 'polyply/data/martini2/DNA_M2.ff' 2023-03-03T15:51:24,836 adding 'polyply/data/martini2/P3HT.martini.2.itp' 2023-03-03T15:51:24,839 adding 'polyply/data/martini2/PDADMA.martini.2.itp' 2023-03-03T15:51:24,841 adding 'polyply/data/martini2/PE.martini.2.itp' 2023-03-03T15:51:24,844 adding 'polyply/data/martini2/PEO.martini.2.itp' 2023-03-03T15:51:24,846 adding 'polyply/data/martini2/PP.martini.2.itp' 2023-03-03T15:51:24,849 adding 'polyply/data/martini2/PS.martini.2.itp' 2023-03-03T15:51:24,852 adding 'polyply/data/martini2/PSS.martini.2.itp' 2023-03-03T15:51:24,855 adding 'polyply/data/martini2/citations.bib' 2023-03-03T15:51:24,857 adding 'polyply/data/martini2/links.ff' 2023-03-03T15:51:24,862 adding 'polyply/data/martini3/P3HT.martini3.ff' 2023-03-03T15:51:24,864 adding 'polyply/data/martini3/PDMS.martini3.ff' 2023-03-03T15:51:24,867 adding 'polyply/data/martini3/PE.martini3.ff' 2023-03-03T15:51:24,869 adding 'polyply/data/martini3/PEL_link.ff' 2023-03-03T15:51:24,872 adding 'polyply/data/martini3/PEO.martini3.ff' 2023-03-03T15:51:24,874 adding 'polyply/data/martini3/PMA.martini3.ff' 2023-03-03T15:51:24,877 adding 'polyply/data/martini3/PMMA.martini3.ff' 2023-03-03T15:51:24,881 adding 'polyply/data/martini3/PPE.martini3.ff' 2023-03-03T15:51:24,883 adding 'polyply/data/martini3/PS.martini3.ff' 2023-03-03T15:51:24,886 adding 'polyply/data/martini3/PSS.martini3.ff' 2023-03-03T15:51:24,888 adding 'polyply/data/martini3/PS_PEO_link.ff' 2023-03-03T15:51:24,891 adding 'polyply/data/martini3/PTMA.martini3.ff' 2023-03-03T15:51:24,893 adding 'polyply/data/martini3/PVA.martini3.ff' 2023-03-03T15:51:24,898 adding 'polyply/data/martini3/aminoacids.ff' 2023-03-03T15:51:24,901 adding 'polyply/data/martini3/cellulose.martini3.ff' 2023-03-03T15:51:24,904 adding 'polyply/data/martini3/citations.bib' 2023-03-03T15:51:24,907 adding 'polyply/data/martini3/dextran.martini3.ff' 2023-03-03T15:51:24,911 adding 'polyply/data/martini3_beta/PEO.martini.3.itp' 2023-03-03T15:51:24,913 adding 'polyply/data/martini3_beta/citations.bib' 2023-03-03T15:51:24,917 adding 'polyply/data/oplsaaLigParGen/OHter.ff' 2023-03-03T15:51:24,920 adding 'polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff' 2023-03-03T15:51:24,923 adding 'polyply/data/oplsaaLigParGen/citations.bib' 2023-03-03T15:51:24,927 adding 'polyply/data/oplsaaLigParGen/links.ff' 2023-03-03T15:51:24,931 adding 'polyply/data/parmbsc1/citations.bib' 2023-03-03T15:51:24,945 adding 'polyply/data/parmbsc1/dna_final.ff' 2023-03-03T15:51:24,951 adding 'polyply/src/__init__.py' 2023-03-03T15:51:24,955 adding 'polyply/src/annotate_ligands.py' 2023-03-03T15:51:24,962 adding 'polyply/src/apply_links.py' 2023-03-03T15:51:24,965 adding 'polyply/src/apply_modifications.py' 2023-03-03T15:51:24,969 adding 'polyply/src/backmap.py' 2023-03-03T15:51:24,973 adding 'polyply/src/build_file_parser.py' 2023-03-03T15:51:24,978 adding 'polyply/src/build_system.py' 2023-03-03T15:51:24,980 adding 'polyply/src/check_residue_equivalence.py' 2023-03-03T15:51:24,983 adding 'polyply/src/ff_parser_sub.py' 2023-03-03T15:51:24,988 adding 'polyply/src/gen_coords.py' 2023-03-03T15:51:24,991 adding 'polyply/src/gen_itp.py' 2023-03-03T15:51:24,996 adding 'polyply/src/gen_seq.py' 2023-03-03T15:51:25,001 adding 'polyply/src/generate_templates.py' 2023-03-03T15:51:25,006 adding 'polyply/src/graph_utils.py' 2023-03-03T15:51:25,010 adding 'polyply/src/linalg_functions.py' 2023-03-03T15:51:25,013 adding 'polyply/src/load_library.py' 2023-03-03T15:51:25,015 adding 'polyply/src/logging.py' 2023-03-03T15:51:25,020 adding 'polyply/src/map_to_molecule.py' 2023-03-03T15:51:25,025 adding 'polyply/src/meta_molecule.py' 2023-03-03T15:51:25,029 adding 'polyply/src/minimizer.py' 2023-03-03T15:51:25,034 adding 'polyply/src/nonbond_engine.py' 2023-03-03T15:51:25,038 adding 'polyply/src/persistence.py' 2023-03-03T15:51:25,042 adding 'polyply/src/polyply_parser.py' 2023-03-03T15:51:25,044 adding 'polyply/src/processor.py' 2023-03-03T15:51:25,049 adding 'polyply/src/random_walk.py' 2023-03-03T15:51:25,053 adding 'polyply/src/restraints.py' 2023-03-03T15:51:25,057 adding 'polyply/src/simple_seq_parsers.py' 2023-03-03T15:51:25,062 adding 'polyply/src/top_parser.py' 2023-03-03T15:51:25,069 adding 'polyply/src/topology.py' 2023-03-03T15:51:25,072 adding 'polyply/src/virtual_site_builder.py' 2023-03-03T15:51:25,077 adding 'polyply/tests/__init__.py' 2023-03-03T15:51:25,080 adding 'polyply/tests/example_fixtures.py' 2023-03-03T15:51:25,084 adding 'polyply/tests/test_annotate_lingads.py' 2023-03-03T15:51:25,090 adding 'polyply/tests/test_apply_links.py' 2023-03-03T15:51:25,094 adding 'polyply/tests/test_backmap.py' 2023-03-03T15:51:25,098 adding 'polyply/tests/test_build_file_parser.py' 2023-03-03T15:51:25,102 adding 'polyply/tests/test_build_system.py' 2023-03-03T15:51:25,105 adding 'polyply/tests/test_ff_parser.py' 2023-03-03T15:51:25,108 adding 'polyply/tests/test_gen_coords.py' 2023-03-03T15:51:25,111 adding 'polyply/tests/test_gen_coords_logic.py' 2023-03-03T15:51:25,114 adding 'polyply/tests/test_gen_params.py' 2023-03-03T15:51:25,118 adding 'polyply/tests/test_gen_seq.py' 2023-03-03T15:51:25,121 adding 'polyply/tests/test_generate_templates.py' 2023-03-03T15:51:25,124 adding 'polyply/tests/test_graph_utils.py' 2023-03-03T15:51:25,129 adding 'polyply/tests/test_itp_files.py' 2023-03-03T15:51:25,133 adding 'polyply/tests/test_lib_files.py' 2023-03-03T15:51:25,136 adding 'polyply/tests/test_linalg.py' 2023-03-03T15:51:25,139 adding 'polyply/tests/test_load_library.py' 2023-03-03T15:51:25,141 adding 'polyply/tests/test_logging.py' 2023-03-03T15:51:25,145 adding 'polyply/tests/test_map_to_molecule.py' 2023-03-03T15:51:25,149 adding 'polyply/tests/test_meta_molecule.py' 2023-03-03T15:51:25,153 adding 'polyply/tests/test_nb_engine.py' 2023-03-03T15:51:25,158 adding 'polyply/tests/test_optimize_geometry.py' 2023-03-03T15:51:25,162 adding 'polyply/tests/test_persistence.py' 2023-03-03T15:51:25,166 adding 'polyply/tests/test_polyply_input.py' 2023-03-03T15:51:25,170 adding 'polyply/tests/test_random_walk.py' 2023-03-03T15:51:25,174 adding 'polyply/tests/test_residue_check.py' 2023-03-03T15:51:25,177 adding 'polyply/tests/test_restraints.py' 2023-03-03T15:51:25,180 adding 'polyply/tests/test_simple_seq_parsers.py' 2023-03-03T15:51:25,184 adding 'polyply/tests/test_top_parser.py' 2023-03-03T15:51:25,190 adding 'polyply/tests/test_topology.py' 2023-03-03T15:51:25,193 adding 'polyply/tests/test_vs_builder.py' 2023-03-03T15:51:25,201 adding 'polyply/tests/test_data/ff/aminoacids.ff' 2023-03-03T15:51:25,207 adding 'polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp' 2023-03-03T15:51:25,210 adding 'polyply/tests/test_data/gen_params/input/PEO.martini.3.itp' 2023-03-03T15:51:25,212 adding 'polyply/tests/test_data/gen_params/input/PPI.ff' 2023-03-03T15:51:25,215 adding 'polyply/tests/test_data/gen_params/input/PPI.json' 2023-03-03T15:51:25,217 adding 'polyply/tests/test_data/gen_params/input/PS.json' 2023-03-03T15:51:25,220 adding 'polyply/tests/test_data/gen_params/input/PS.martini.2.itp' 2023-03-03T15:51:25,223 adding 'polyply/tests/test_data/gen_params/input/removal.ff' 2023-03-03T15:51:25,225 adding 'polyply/tests/test_data/gen_params/input/test.ff' 2023-03-03T15:51:25,228 adding 'polyply/tests/test_data/gen_params/input/test_edge_attr.ff' 2023-03-03T15:51:25,230 adding 'polyply/tests/test_data/gen_params/input/test_edge_attr.json' 2023-03-03T15:51:25,234 adding 'polyply/tests/test_data/gen_params/logging/ERROR_block.ff' 2023-03-03T15:51:25,237 adding 'polyply/tests/test_data/gen_params/logging/ERROR_link.ff' 2023-03-03T15:51:25,239 adding 'polyply/tests/test_data/gen_params/logging/INFO_block.ff' 2023-03-03T15:51:25,242 adding 'polyply/tests/test_data/gen_params/logging/INFO_link.ff' 2023-03-03T15:51:25,244 adding 'polyply/tests/test_data/gen_params/logging/WARNING_block.ff' 2023-03-03T15:51:25,247 adding 'polyply/tests/test_data/gen_params/logging/WARNING_link.ff' 2023-03-03T15:51:25,252 adding 'polyply/tests/test_data/gen_params/output/P3HT_out.itp' 2023-03-03T15:51:25,254 adding 'polyply/tests/test_data/gen_params/output/PEO_out.itp' 2023-03-03T15:51:25,257 adding 'polyply/tests/test_data/gen_params/output/PPI_out.itp' 2023-03-03T15:51:25,260 adding 'polyply/tests/test_data/gen_params/output/PS_out.itp' 2023-03-03T15:51:25,263 adding 'polyply/tests/test_data/gen_params/output/removal.itp' 2023-03-03T15:51:25,265 adding 'polyply/tests/test_data/gen_params/output/test_edge_attr_out.itp' 2023-03-03T15:51:25,268 adding 'polyply/tests/test_data/gen_params/output/test_out.itp' 2023-03-03T15:51:25,271 adding 'polyply/tests/test_data/gen_params/ref/G3.itp' 2023-03-03T15:51:25,275 adding 'polyply/tests/test_data/gen_params/ref/P3HT_10.itp' 2023-03-03T15:51:25,279 adding 'polyply/tests/test_data/gen_params/ref/PEO_10.itp' 2023-03-03T15:51:25,283 adding 'polyply/tests/test_data/gen_params/ref/PS_10.itp' 2023-03-03T15:51:25,285 adding 'polyply/tests/test_data/gen_params/ref/end.itp' 2023-03-03T15:51:25,287 adding 'polyply/tests/test_data/gen_params/ref/removal.itp' 2023-03-03T15:51:25,290 adding 'polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp' 2023-03-03T15:51:25,293 adding 'polyply/tests/test_data/gen_params/ref/test_rev.itp' 2023-03-03T15:51:25,313 adding 'polyply/tests/test_data/gen_seq/input/molecule_0.itp' 2023-03-03T15:51:25,318 adding 'polyply/tests/test_data/gen_seq/output/PEO_PS.json' 2023-03-03T15:51:25,320 adding 'polyply/tests/test_data/gen_seq/output/PPI.json' 2023-03-03T15:51:25,333 adding 'polyply/tests/test_data/gen_seq/output/lysoPEG.json' 2023-03-03T15:51:25,348 adding 'polyply/tests/test_data/gen_seq/output/lyso_PEG.json' 2023-03-03T15:51:25,354 adding 'polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json' 2023-03-03T15:51:25,357 adding 'polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json' 2023-03-03T15:51:25,360 adding 'polyply/tests/test_data/gen_seq/ref/PPI_ref.json' 2023-03-03T15:51:25,367 adding 'polyply/tests/test_data/gen_seq/ref/lyso_PEG.json' 2023-03-03T15:51:25,371 adding 'polyply/tests/test_data/itp/PEO.itp' 2023-03-03T15:51:25,375 adding 'polyply/tests/test_data/json/double_branch.json' 2023-03-03T15:51:25,377 adding 'polyply/tests/test_data/json/fail.json' 2023-03-03T15:51:25,380 adding 'polyply/tests/test_data/json/hyperbranched.json' 2023-03-03T15:51:25,382 adding 'polyply/tests/test_data/json/linear.json' 2023-03-03T15:51:25,385 adding 'polyply/tests/test_data/json/linear_rev.json' 2023-03-03T15:51:25,387 adding 'polyply/tests/test_data/json/single_branch.json' 2023-03-03T15:51:25,400 adding 'polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp' 2023-03-03T15:51:25,402 adding 'polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command' 2023-03-03T15:51:25,406 adding 'polyply/tests/test_data/library_tests/2016H66/PE/PE.json' 2023-03-03T15:51:25,410 adding 'polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp' 2023-03-03T15:51:25,412 adding 'polyply/tests/test_data/library_tests/2016H66/PE/polyply/command' 2023-03-03T15:51:25,416 adding 'polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json' 2023-03-03T15:51:25,420 adding 'polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp' 2023-03-03T15:51:25,423 adding 'polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command' 2023-03-03T15:51:25,427 adding 'polyply/tests/test_data/library_tests/2016H66/PP/PP.json' 2023-03-03T15:51:25,431 adding 'polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp' 2023-03-03T15:51:25,433 adding 'polyply/tests/test_data/library_tests/2016H66/PP/polyply/command' 2023-03-03T15:51:25,436 adding 'polyply/tests/test_data/library_tests/2016H66/PS/PS.json' 2023-03-03T15:51:25,442 adding 'polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp' 2023-03-03T15:51:25,444 adding 'polyply/tests/test_data/library_tests/2016H66/PS/polyply/command' 2023-03-03T15:51:25,448 adding 'polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json' 2023-03-03T15:51:25,452 adding 'polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp' 2023-03-03T15:51:25,455 adding 'polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command' 2023-03-03T15:51:25,467 adding 'polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp' 2023-03-03T15:51:25,470 adding 'polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command' 2023-03-03T15:51:25,474 adding 'polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp' 2023-03-03T15:51:25,480 adding 'polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp' 2023-03-03T15:51:25,483 adding 'polyply/tests/test_data/library_tests/martini2/PEL/polyply/command' 2023-03-03T15:51:25,489 adding 'polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp' 2023-03-03T15:51:25,491 adding 'polyply/tests/test_data/library_tests/martini2/PEO/polyply/command' 2023-03-03T15:51:25,495 adding 'polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json' 2023-03-03T15:51:25,499 adding 'polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp' 2023-03-03T15:51:25,501 adding 'polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command' 2023-03-03T15:51:25,506 adding 'polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp' 2023-03-03T15:51:25,508 adding 'polyply/tests/test_data/library_tests/martini2/PS/polyply/command' 2023-03-03T15:51:25,598 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp' 2023-03-03T15:51:25,606 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json' 2023-03-03T15:51:25,610 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command' 2023-03-03T15:51:25,712 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp' 2023-03-03T15:51:25,732 adding 'polyply/tests/test_data/library_tests/martini3/CEL/polyply/CEL.itp' 2023-03-03T15:51:25,735 adding 'polyply/tests/test_data/library_tests/martini3/CEL/polyply/command' 2023-03-03T15:51:25,741 adding 'polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp' 2023-03-03T15:51:25,743 adding 'polyply/tests/test_data/library_tests/martini3/DEX/polyply/command' 2023-03-03T15:51:25,748 adding 'polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp' 2023-03-03T15:51:25,751 adding 'polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command' 2023-03-03T15:51:25,756 adding 'polyply/tests/test_data/library_tests/martini3/PDMS/polyply/PDMS.itp' 2023-03-03T15:51:25,759 adding 'polyply/tests/test_data/library_tests/martini3/PDMS/polyply/command' 2023-03-03T15:51:25,764 adding 'polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp' 2023-03-03T15:51:25,766 adding 'polyply/tests/test_data/library_tests/martini3/PE/polyply/command' 2023-03-03T15:51:25,771 adding 'polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp' 2023-03-03T15:51:25,774 adding 'polyply/tests/test_data/library_tests/martini3/PEO/polyply/command' 2023-03-03T15:51:25,781 adding 'polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp' 2023-03-03T15:51:25,784 adding 'polyply/tests/test_data/library_tests/martini3/PPE/polyply/command' 2023-03-03T15:51:25,793 adding 'polyply/tests/test_data/library_tests/martini3/PROT/init.itp' 2023-03-03T15:51:25,798 adding 'polyply/tests/test_data/library_tests/martini3/PROT/lysozyme_seq.json' 2023-03-03T15:51:25,809 adding 'polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp' 2023-03-03T15:51:25,812 adding 'polyply/tests/test_data/library_tests/martini3/PROT/polyply/command' 2023-03-03T15:51:25,819 adding 'polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp' 2023-03-03T15:51:25,822 adding 'polyply/tests/test_data/library_tests/martini3/PS/polyply/command' 2023-03-03T15:51:25,828 adding 'polyply/tests/test_data/library_tests/martini3/PTMA/polyply/PTMA.itp' 2023-03-03T15:51:25,830 adding 'polyply/tests/test_data/library_tests/martini3/PTMA/polyply/command' 2023-03-03T15:51:25,839 adding 'polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp' 2023-03-03T15:51:25,842 adding 'polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command' 2023-03-03T15:51:25,902 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp' 2023-03-03T15:51:25,907 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json' 2023-03-03T15:51:25,971 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp' 2023-03-03T15:51:25,978 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command' 2023-03-03T15:51:25,982 adding 'polyply/tests/test_data/polyply/P3HT.martini.2.itp' 2023-03-03T15:51:25,985 adding 'polyply/tests/test_data/polyply/PDADMA.martini.2.itp' 2023-03-03T15:51:25,988 adding 'polyply/tests/test_data/polyply/PE.martini.2.itp' 2023-03-03T15:51:25,991 adding 'polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp' 2023-03-03T15:51:25,994 adding 'polyply/tests/test_data/polyply/PEO.martini.2.itp' 2023-03-03T15:51:25,996 adding 'polyply/tests/test_data/polyply/PEO.martini.3.itp' 2023-03-03T15:51:25,999 adding 'polyply/tests/test_data/polyply/PP.martini.2.itp' 2023-03-03T15:51:26,002 adding 'polyply/tests/test_data/polyply/PS.martini.2.itp' 2023-03-03T15:51:26,005 adding 'polyply/tests/test_data/polyply/PSS.martini.2.itp' 2023-03-03T15:51:26,008 adding 'polyply/tests/test_data/simple_seq_files/test.fasta' 2023-03-03T15:51:26,011 adding 'polyply/tests/test_data/simple_seq_files/test.ig' 2023-03-03T15:51:26,013 adding 'polyply/tests/test_data/simple_seq_files/test.txt' 2023-03-03T15:51:26,015 adding 'polyply/tests/test_data/simple_seq_files/test_RNA.fasta' 2023-03-03T15:51:26,018 adding 'polyply/tests/test_data/simple_seq_files/test_RNA.ig' 2023-03-03T15:51:26,020 adding 'polyply/tests/test_data/simple_seq_files/test_circle.ig' 2023-03-03T15:51:26,023 adding 'polyply/tests/test_data/simple_seq_files/test_fail.ig' 2023-03-03T15:51:26,025 adding 'polyply/tests/test_data/simple_seq_files/test_protein.fasta' 2023-03-03T15:51:26,029 adding 'polyply/tests/test_data/struc_build/PEO.itp' 2023-03-03T15:51:26,040 adding 'polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp' 2023-03-03T15:51:26,044 adding 'polyply/tests/test_data/struc_build/system.top' 2023-03-03T15:51:26,048 adding 'polyply/tests/test_data/topology_test/W.itp' 2023-03-03T15:51:26,050 adding 'polyply/tests/test_data/topology_test/cog.gro' 2023-03-03T15:51:26,053 adding 'polyply/tests/test_data/topology_test/cog_missing.gro' 2023-03-03T15:51:26,056 adding 'polyply/tests/test_data/topology_test/complete.gro' 2023-03-03T15:51:26,058 adding 'polyply/tests/test_data/topology_test/fail.gro' 2023-03-03T15:51:26,143 adding 'polyply/tests/test_data/topology_test/ffnonbonded.itp' 2023-03-03T15:51:26,154 adding 'polyply/tests/test_data/topology_test/meta.gro' 2023-03-03T15:51:26,195 adding 'polyply/tests/test_data/topology_test/molecule_0.itp' 2023-03-03T15:51:26,200 adding 'polyply/tests/test_data/topology_test/pdb.top' 2023-03-03T15:51:26,203 adding 'polyply/tests/test_data/topology_test/system.top' 2023-03-03T15:51:26,205 adding 'polyply/tests/test_data/topology_test/test.gro' 2023-03-03T15:51:26,208 adding 'polyply/tests/test_data/topology_test/test.itp' 2023-03-03T15:51:26,240 adding 'polyply/tests/test_data/topology_test/test.pdb' 2023-03-03T15:51:26,248 adding 'polyply-1.5.0.data/scripts/polyply' 2023-03-03T15:51:26,253 adding 'polyply-1.5.0.dist-info/AUTHORS' 2023-03-03T15:51:26,258 adding 'polyply-1.5.0.dist-info/LICENSE' 2023-03-03T15:51:26,261 adding 'polyply-1.5.0.dist-info/METADATA' 2023-03-03T15:51:26,264 adding 'polyply-1.5.0.dist-info/WHEEL' 2023-03-03T15:51:26,266 adding 'polyply-1.5.0.dist-info/pbr.json' 2023-03-03T15:51:26,268 adding 'polyply-1.5.0.dist-info/top_level.txt' 2023-03-03T15:51:26,278 adding 'polyply-1.5.0.dist-info/RECORD' 2023-03-03T15:51:26,319 removing build/bdist.linux-armv7l/wheel 2023-03-03T15:51:26,507 /tmp/pip-build-env-6d8hgd5r/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'polyply.tests.test_data.topology_test' as data is deprecated, please list it in `packages`. 2023-03-03T15:51:26,508 !! 2023-03-03T15:51:26,509 ############################ 2023-03-03T15:51:26,509 # Package would be ignored # 2023-03-03T15:51:26,509 ############################ 2023-03-03T15:51:26,510 Python recognizes 'polyply.tests.test_data.topology_test' as an importable package, 2023-03-03T15:51:26,510 but it is not listed in the `packages` configuration of setuptools. 2023-03-03T15:51:26,511 'polyply.tests.test_data.topology_test' has been automatically added to the distribution only 2023-03-03T15:51:26,511 because it may contain data files, but this behavior is likely to change 2023-03-03T15:51:26,511 in future versions of setuptools (and therefore is considered deprecated). 2023-03-03T15:51:26,512 Please make sure that 'polyply.tests.test_data.topology_test' is included as a package by using 2023-03-03T15:51:26,512 the `packages` configuration field or the proper discovery methods 2023-03-03T15:51:26,512 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-03T15:51:26,513 instead of `find_packages(...)`/`find:`). 2023-03-03T15:51:26,513 You can read more about "package discovery" and "data files" on setuptools 2023-03-03T15:51:26,514 documentation page. 2023-03-03T15:51:26,515 !! 2023-03-03T15:51:26,516 check.warn(importable) 2023-03-03T15:51:26,689 Building wheel for polyply (pyproject.toml): finished with status 'done' 2023-03-03T15:51:26,738 Created wheel for polyply: filename=polyply-1.5.0-py2.py3-none-any.whl size=641014 sha256=ba6608f25a60332e2b282596b80c03684076ce91cec8ee0b79322bac515bb65c 2023-03-03T15:51:26,740 Stored in directory: /tmp/pip-ephem-wheel-cache-hblf24bm/wheels/69/b9/38/e7798d8594d4d19b47f498c4b83a5a0638faee4dcd4e2621a5 2023-03-03T15:51:26,789 Successfully built polyply 2023-03-03T15:51:26,859 Removed build tracker: '/tmp/pip-build-tracker-t2ahah_o'