2023-03-08T13:54:04,156 Created temporary directory: /tmp/pip-ephem-wheel-cache-ui6yr64s
2023-03-08T13:54:04,162 Created temporary directory: /tmp/pip-build-tracker-ynxlbe4y
2023-03-08T13:54:04,163 Initialized build tracking at /tmp/pip-build-tracker-ynxlbe4y
2023-03-08T13:54:04,164 Created build tracker: /tmp/pip-build-tracker-ynxlbe4y
2023-03-08T13:54:04,164 Entered build tracker: /tmp/pip-build-tracker-ynxlbe4y
2023-03-08T13:54:04,165 Created temporary directory: /tmp/pip-wheel-ee434_o8
2023-03-08T13:54:04,176 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-08T13:54:04,181 Created temporary directory: /tmp/pip-ephem-wheel-cache-cghnxgs7
2023-03-08T13:54:04,241 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-08T13:54:04,247 2 location(s) to search for versions of commonnexus:
2023-03-08T13:54:04,247 * https://pypi.org/simple/commonnexus/
2023-03-08T13:54:04,247 * https://www.piwheels.org/simple/commonnexus/
2023-03-08T13:54:04,248 Fetching project page and analyzing links: https://pypi.org/simple/commonnexus/
2023-03-08T13:54:04,249 Getting page https://pypi.org/simple/commonnexus/
2023-03-08T13:54:04,253 Found index url https://pypi.org/simple
2023-03-08T13:54:04,511 Fetched page https://pypi.org/simple/commonnexus/ as application/vnd.pypi.simple.v1+json
2023-03-08T13:54:04,515   Skipping link: No binaries permitted for commonnexus: https://files.pythonhosted.org/packages/6f/ad/24af8677ef5f7485edfc90bdb2c305ac9d135c9632084d779ff339296df0/commonnexus-0.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/commonnexus/) (requires-python:>=3.7)
2023-03-08T13:54:04,516   Found link https://files.pythonhosted.org/packages/ce/52/0e2b4d935815359ea631e461dc5b747f67e82e397c1e8af57685ff878d56/commonnexus-0.1.0.tar.gz (from https://pypi.org/simple/commonnexus/) (requires-python:>=3.7), version: 0.1.0
2023-03-08T13:54:04,517   Skipping link: No binaries permitted for commonnexus: https://files.pythonhosted.org/packages/b5/f8/e2407b5701f90cec830a3dd34004985a4a5e5d27c0197b9c72ece27c00e5/commonnexus-1.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/commonnexus/) (requires-python:>=3.7)
2023-03-08T13:54:04,518   Found link https://files.pythonhosted.org/packages/9a/50/7733580336e4d3a01a03be36e105881a12b73c1a06cadfd35d2ff566fb6e/commonnexus-1.0.0.tar.gz (from https://pypi.org/simple/commonnexus/) (requires-python:>=3.7), version: 1.0.0
2023-03-08T13:54:04,519 Fetching project page and analyzing links: https://www.piwheels.org/simple/commonnexus/
2023-03-08T13:54:04,520 Getting page https://www.piwheels.org/simple/commonnexus/
2023-03-08T13:54:04,522 Found index url https://www.piwheels.org/simple
2023-03-08T13:54:04,806 Fetched page https://www.piwheels.org/simple/commonnexus/ as text/html
2023-03-08T13:54:04,809   Skipping link: No binaries permitted for commonnexus: https://www.piwheels.org/simple/commonnexus/commonnexus-0.1.0-py2.py3-none-any.whl#sha256=b1998a701efec9a50e57af788d4413d67c3bceeff0f3c02a6bc4cf78d25796e5 (from https://www.piwheels.org/simple/commonnexus/) (requires-python:>=3.7)
2023-03-08T13:54:04,810 Skipping link: not a file: https://www.piwheels.org/simple/commonnexus/
2023-03-08T13:54:04,810 Skipping link: not a file: https://pypi.org/simple/commonnexus/
2023-03-08T13:54:04,847 Given no hashes to check 1 links for project 'commonnexus': discarding no candidates
2023-03-08T13:54:04,877 Collecting commonnexus==1.0.0
2023-03-08T13:54:04,882   Created temporary directory: /tmp/pip-unpack-gntel8rr
2023-03-08T13:54:05,124   Downloading commonnexus-1.0.0.tar.gz (65 kB)
2023-03-08T13:54:05,431   Added commonnexus==1.0.0 from https://files.pythonhosted.org/packages/9a/50/7733580336e4d3a01a03be36e105881a12b73c1a06cadfd35d2ff566fb6e/commonnexus-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-ynxlbe4y'
2023-03-08T13:54:05,434   Running setup.py (path:/tmp/pip-wheel-ee434_o8/commonnexus_b2dba96b67244879a967c1d54e628aa8/setup.py) egg_info for package commonnexus
2023-03-08T13:54:05,439   Created temporary directory: /tmp/pip-pip-egg-info-x92m30au
2023-03-08T13:54:05,439   Preparing metadata (setup.py): started
2023-03-08T13:54:05,442   Running command python setup.py egg_info
2023-03-08T13:54:07,401   running egg_info
2023-03-08T13:54:07,405   creating /tmp/pip-pip-egg-info-x92m30au/commonnexus.egg-info
2023-03-08T13:54:07,456   writing /tmp/pip-pip-egg-info-x92m30au/commonnexus.egg-info/PKG-INFO
2023-03-08T13:54:07,464   writing dependency_links to /tmp/pip-pip-egg-info-x92m30au/commonnexus.egg-info/dependency_links.txt
2023-03-08T13:54:07,469   writing entry points to /tmp/pip-pip-egg-info-x92m30au/commonnexus.egg-info/entry_points.txt
2023-03-08T13:54:07,512   writing requirements to /tmp/pip-pip-egg-info-x92m30au/commonnexus.egg-info/requires.txt
2023-03-08T13:54:07,515   writing top-level names to /tmp/pip-pip-egg-info-x92m30au/commonnexus.egg-info/top_level.txt
2023-03-08T13:54:07,519   writing manifest file '/tmp/pip-pip-egg-info-x92m30au/commonnexus.egg-info/SOURCES.txt'
2023-03-08T13:54:07,701   reading manifest file '/tmp/pip-pip-egg-info-x92m30au/commonnexus.egg-info/SOURCES.txt'
2023-03-08T13:54:07,705   adding license file 'LICENSE'
2023-03-08T13:54:07,713   writing manifest file '/tmp/pip-pip-egg-info-x92m30au/commonnexus.egg-info/SOURCES.txt'
2023-03-08T13:54:07,832   Preparing metadata (setup.py): finished with status 'done'
2023-03-08T13:54:07,847   Source in /tmp/pip-wheel-ee434_o8/commonnexus_b2dba96b67244879a967c1d54e628aa8 has version 1.0.0, which satisfies requirement commonnexus==1.0.0 from https://files.pythonhosted.org/packages/9a/50/7733580336e4d3a01a03be36e105881a12b73c1a06cadfd35d2ff566fb6e/commonnexus-1.0.0.tar.gz
2023-03-08T13:54:07,849   Removed commonnexus==1.0.0 from https://files.pythonhosted.org/packages/9a/50/7733580336e4d3a01a03be36e105881a12b73c1a06cadfd35d2ff566fb6e/commonnexus-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-ynxlbe4y'
2023-03-08T13:54:07,865 Created temporary directory: /tmp/pip-unpack-urwijleg
2023-03-08T13:54:07,866 Building wheels for collected packages: commonnexus
2023-03-08T13:54:07,876   Created temporary directory: /tmp/pip-wheel-656_o3cy
2023-03-08T13:54:07,877   Building wheel for commonnexus (setup.py): started
2023-03-08T13:54:07,879   Destination directory: /tmp/pip-wheel-656_o3cy
2023-03-08T13:54:07,879   Running command python setup.py bdist_wheel
2023-03-08T13:54:10,220   running bdist_wheel
2023-03-08T13:54:10,378   running build
2023-03-08T13:54:10,379   running build_py
2023-03-08T13:54:10,438   creating build
2023-03-08T13:54:10,439   creating build/lib
2023-03-08T13:54:10,441   creating build/lib/commonnexus
2023-03-08T13:54:10,443   copying src/commonnexus/_compat.py -> build/lib/commonnexus
2023-03-08T13:54:10,447   copying src/commonnexus/util.py -> build/lib/commonnexus
2023-03-08T13:54:10,451   copying src/commonnexus/cli_util.py -> build/lib/commonnexus
2023-03-08T13:54:10,455   copying src/commonnexus/tokenizer.py -> build/lib/commonnexus
2023-03-08T13:54:10,459   copying src/commonnexus/__main__.py -> build/lib/commonnexus
2023-03-08T13:54:10,464   copying src/commonnexus/nexus.py -> build/lib/commonnexus
2023-03-08T13:54:10,469   copying src/commonnexus/command.py -> build/lib/commonnexus
2023-03-08T13:54:10,474   copying src/commonnexus/__init__.py -> build/lib/commonnexus
2023-03-08T13:54:10,479   creating build/lib/commonnexus/tools
2023-03-08T13:54:10,481   copying src/commonnexus/tools/matrix.py -> build/lib/commonnexus/tools
2023-03-08T13:54:10,486   copying src/commonnexus/tools/normalise.py -> build/lib/commonnexus/tools
2023-03-08T13:54:10,490   copying src/commonnexus/tools/combine.py -> build/lib/commonnexus/tools
2023-03-08T13:54:10,494   copying src/commonnexus/tools/__init__.py -> build/lib/commonnexus/tools
2023-03-08T13:54:10,499   creating build/lib/commonnexus/blocks
2023-03-08T13:54:10,501   copying src/commonnexus/blocks/sets.py -> build/lib/commonnexus/blocks
2023-03-08T13:54:10,506   copying src/commonnexus/blocks/codons.py -> build/lib/commonnexus/blocks
2023-03-08T13:54:10,510   copying src/commonnexus/blocks/characters.py -> build/lib/commonnexus/blocks
2023-03-08T13:54:10,517   copying src/commonnexus/blocks/assumptions.py -> build/lib/commonnexus/blocks
2023-03-08T13:54:10,522   copying src/commonnexus/blocks/notes.py -> build/lib/commonnexus/blocks
2023-03-08T13:54:10,526   copying src/commonnexus/blocks/distances.py -> build/lib/commonnexus/blocks
2023-03-08T13:54:10,531   copying src/commonnexus/blocks/base.py -> build/lib/commonnexus/blocks
2023-03-08T13:54:10,536   copying src/commonnexus/blocks/trees.py -> build/lib/commonnexus/blocks
2023-03-08T13:54:10,542   copying src/commonnexus/blocks/taxa.py -> build/lib/commonnexus/blocks
2023-03-08T13:54:10,546   copying src/commonnexus/blocks/unaligned.py -> build/lib/commonnexus/blocks
2023-03-08T13:54:10,550   copying src/commonnexus/blocks/__init__.py -> build/lib/commonnexus/blocks
2023-03-08T13:54:10,556   creating build/lib/commonnexus/commands
2023-03-08T13:54:10,559   copying src/commonnexus/commands/characters.py -> build/lib/commonnexus/commands
2023-03-08T13:54:10,564   copying src/commonnexus/commands/normalise.py -> build/lib/commonnexus/commands
2023-03-08T13:54:10,568   copying src/commonnexus/commands/trees.py -> build/lib/commonnexus/commands
2023-03-08T13:54:10,572   copying src/commonnexus/commands/help.py -> build/lib/commonnexus/commands
2023-03-08T13:54:10,576   copying src/commonnexus/commands/combine.py -> build/lib/commonnexus/commands
2023-03-08T13:54:10,581   copying src/commonnexus/commands/taxa.py -> build/lib/commonnexus/commands
2023-03-08T13:54:10,585   copying src/commonnexus/commands/__init__.py -> build/lib/commonnexus/commands
2023-03-08T13:54:10,657   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2023-03-08T13:54:10,658     setuptools.SetuptoolsDeprecationWarning,
2023-03-08T13:54:10,716   installing to build/bdist.linux-armv7l/wheel
2023-03-08T13:54:10,716   running install
2023-03-08T13:54:10,777   running install_lib
2023-03-08T13:54:10,832   creating build/bdist.linux-armv7l
2023-03-08T13:54:10,833   creating build/bdist.linux-armv7l/wheel
2023-03-08T13:54:10,836   creating build/bdist.linux-armv7l/wheel/commonnexus
2023-03-08T13:54:10,838   copying build/lib/commonnexus/_compat.py -> build/bdist.linux-armv7l/wheel/commonnexus
2023-03-08T13:54:10,842   copying build/lib/commonnexus/util.py -> build/bdist.linux-armv7l/wheel/commonnexus
2023-03-08T13:54:10,846   copying build/lib/commonnexus/cli_util.py -> build/bdist.linux-armv7l/wheel/commonnexus
2023-03-08T13:54:10,849   copying build/lib/commonnexus/tokenizer.py -> build/bdist.linux-armv7l/wheel/commonnexus
2023-03-08T13:54:10,854   copying build/lib/commonnexus/__main__.py -> build/bdist.linux-armv7l/wheel/commonnexus
2023-03-08T13:54:10,858   copying build/lib/commonnexus/nexus.py -> build/bdist.linux-armv7l/wheel/commonnexus
2023-03-08T13:54:10,863   creating build/bdist.linux-armv7l/wheel/commonnexus/tools
2023-03-08T13:54:10,865   copying build/lib/commonnexus/tools/matrix.py -> build/bdist.linux-armv7l/wheel/commonnexus/tools
2023-03-08T13:54:10,870   copying build/lib/commonnexus/tools/normalise.py -> build/bdist.linux-armv7l/wheel/commonnexus/tools
2023-03-08T13:54:10,874   copying build/lib/commonnexus/tools/combine.py -> build/bdist.linux-armv7l/wheel/commonnexus/tools
2023-03-08T13:54:10,877   copying build/lib/commonnexus/tools/__init__.py -> build/bdist.linux-armv7l/wheel/commonnexus/tools
2023-03-08T13:54:10,882   creating build/bdist.linux-armv7l/wheel/commonnexus/blocks
2023-03-08T13:54:10,884   copying build/lib/commonnexus/blocks/sets.py -> build/bdist.linux-armv7l/wheel/commonnexus/blocks
2023-03-08T13:54:10,888   copying build/lib/commonnexus/blocks/codons.py -> build/bdist.linux-armv7l/wheel/commonnexus/blocks
2023-03-08T13:54:10,893   copying build/lib/commonnexus/blocks/characters.py -> build/bdist.linux-armv7l/wheel/commonnexus/blocks
2023-03-08T13:54:10,900   copying build/lib/commonnexus/blocks/assumptions.py -> build/bdist.linux-armv7l/wheel/commonnexus/blocks
2023-03-08T13:54:10,905   copying build/lib/commonnexus/blocks/notes.py -> build/bdist.linux-armv7l/wheel/commonnexus/blocks
2023-03-08T13:54:10,909   copying build/lib/commonnexus/blocks/distances.py -> build/bdist.linux-armv7l/wheel/commonnexus/blocks
2023-03-08T13:54:10,914   copying build/lib/commonnexus/blocks/base.py -> build/bdist.linux-armv7l/wheel/commonnexus/blocks
2023-03-08T13:54:10,918   copying build/lib/commonnexus/blocks/trees.py -> build/bdist.linux-armv7l/wheel/commonnexus/blocks
2023-03-08T13:54:10,924   copying build/lib/commonnexus/blocks/taxa.py -> build/bdist.linux-armv7l/wheel/commonnexus/blocks
2023-03-08T13:54:10,927   copying build/lib/commonnexus/blocks/unaligned.py -> build/bdist.linux-armv7l/wheel/commonnexus/blocks
2023-03-08T13:54:10,931   copying build/lib/commonnexus/blocks/__init__.py -> build/bdist.linux-armv7l/wheel/commonnexus/blocks
2023-03-08T13:54:10,935   copying build/lib/commonnexus/command.py -> build/bdist.linux-armv7l/wheel/commonnexus
2023-03-08T13:54:10,940   creating build/bdist.linux-armv7l/wheel/commonnexus/commands
2023-03-08T13:54:10,942   copying build/lib/commonnexus/commands/characters.py -> build/bdist.linux-armv7l/wheel/commonnexus/commands
2023-03-08T13:54:10,946   copying build/lib/commonnexus/commands/normalise.py -> build/bdist.linux-armv7l/wheel/commonnexus/commands
2023-03-08T13:54:10,950   copying build/lib/commonnexus/commands/trees.py -> build/bdist.linux-armv7l/wheel/commonnexus/commands
2023-03-08T13:54:10,954   copying build/lib/commonnexus/commands/help.py -> build/bdist.linux-armv7l/wheel/commonnexus/commands
2023-03-08T13:54:10,957   copying build/lib/commonnexus/commands/combine.py -> build/bdist.linux-armv7l/wheel/commonnexus/commands
2023-03-08T13:54:10,961   copying build/lib/commonnexus/commands/taxa.py -> build/bdist.linux-armv7l/wheel/commonnexus/commands
2023-03-08T13:54:10,966   copying build/lib/commonnexus/commands/__init__.py -> build/bdist.linux-armv7l/wheel/commonnexus/commands
2023-03-08T13:54:10,969   copying build/lib/commonnexus/__init__.py -> build/bdist.linux-armv7l/wheel/commonnexus
2023-03-08T13:54:10,972   running install_egg_info
2023-03-08T13:54:11,109   running egg_info
2023-03-08T13:54:11,161   writing src/commonnexus.egg-info/PKG-INFO
2023-03-08T13:54:11,165   writing dependency_links to src/commonnexus.egg-info/dependency_links.txt
2023-03-08T13:54:11,170   writing entry points to src/commonnexus.egg-info/entry_points.txt
2023-03-08T13:54:11,174   writing requirements to src/commonnexus.egg-info/requires.txt
2023-03-08T13:54:11,176   writing top-level names to src/commonnexus.egg-info/top_level.txt
2023-03-08T13:54:11,241   reading manifest file 'src/commonnexus.egg-info/SOURCES.txt'
2023-03-08T13:54:11,247   adding license file 'LICENSE'
2023-03-08T13:54:11,256   writing manifest file 'src/commonnexus.egg-info/SOURCES.txt'
2023-03-08T13:54:11,259   Copying src/commonnexus.egg-info to build/bdist.linux-armv7l/wheel/commonnexus-1.0.0-py3.7.egg-info
2023-03-08T13:54:11,287   running install_scripts
2023-03-08T13:54:11,344   adding license file "LICENSE" (matched pattern "LICENSE")
2023-03-08T13:54:11,353   creating build/bdist.linux-armv7l/wheel/commonnexus-1.0.0.dist-info/WHEEL
2023-03-08T13:54:11,358   creating '/tmp/pip-wheel-656_o3cy/commonnexus-1.0.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-03-08T13:54:11,363   adding 'commonnexus/__init__.py'
2023-03-08T13:54:11,366   adding 'commonnexus/__main__.py'
2023-03-08T13:54:11,369   adding 'commonnexus/_compat.py'
2023-03-08T13:54:11,372   adding 'commonnexus/cli_util.py'
2023-03-08T13:54:11,375   adding 'commonnexus/command.py'
2023-03-08T13:54:11,381   adding 'commonnexus/nexus.py'
2023-03-08T13:54:11,386   adding 'commonnexus/tokenizer.py'
2023-03-08T13:54:11,389   adding 'commonnexus/util.py'
2023-03-08T13:54:11,392   adding 'commonnexus/blocks/__init__.py'
2023-03-08T13:54:11,397   adding 'commonnexus/blocks/assumptions.py'
2023-03-08T13:54:11,401   adding 'commonnexus/blocks/base.py'
2023-03-08T13:54:11,419   adding 'commonnexus/blocks/characters.py'
2023-03-08T13:54:11,424   adding 'commonnexus/blocks/codons.py'
2023-03-08T13:54:11,430   adding 'commonnexus/blocks/distances.py'
2023-03-08T13:54:11,433   adding 'commonnexus/blocks/notes.py'
2023-03-08T13:54:11,437   adding 'commonnexus/blocks/sets.py'
2023-03-08T13:54:11,441   adding 'commonnexus/blocks/taxa.py'
2023-03-08T13:54:11,446   adding 'commonnexus/blocks/trees.py'
2023-03-08T13:54:11,449   adding 'commonnexus/blocks/unaligned.py'
2023-03-08T13:54:11,453   adding 'commonnexus/commands/__init__.py'
2023-03-08T13:54:11,456   adding 'commonnexus/commands/characters.py'
2023-03-08T13:54:11,458   adding 'commonnexus/commands/combine.py'
2023-03-08T13:54:11,461   adding 'commonnexus/commands/help.py'
2023-03-08T13:54:11,463   adding 'commonnexus/commands/normalise.py'
2023-03-08T13:54:11,466   adding 'commonnexus/commands/taxa.py'
2023-03-08T13:54:11,469   adding 'commonnexus/commands/trees.py'
2023-03-08T13:54:11,473   adding 'commonnexus/tools/__init__.py'
2023-03-08T13:54:11,476   adding 'commonnexus/tools/combine.py'
2023-03-08T13:54:11,480   adding 'commonnexus/tools/matrix.py'
2023-03-08T13:54:11,484   adding 'commonnexus/tools/normalise.py'
2023-03-08T13:54:11,491   adding 'commonnexus-1.0.0.dist-info/LICENSE'
2023-03-08T13:54:11,494   adding 'commonnexus-1.0.0.dist-info/METADATA'
2023-03-08T13:54:11,496   adding 'commonnexus-1.0.0.dist-info/WHEEL'
2023-03-08T13:54:11,498   adding 'commonnexus-1.0.0.dist-info/entry_points.txt'
2023-03-08T13:54:11,500   adding 'commonnexus-1.0.0.dist-info/top_level.txt'
2023-03-08T13:54:11,502   adding 'commonnexus-1.0.0.dist-info/RECORD'
2023-03-08T13:54:11,508   removing build/bdist.linux-armv7l/wheel
2023-03-08T13:54:11,675   Building wheel for commonnexus (setup.py): finished with status 'done'
2023-03-08T13:54:11,684   Created wheel for commonnexus: filename=commonnexus-1.0.0-py2.py3-none-any.whl size=75744 sha256=b42cac297c488b91c998df840da85ff45d156b1d3c5416476689c187a55999e3
2023-03-08T13:54:11,686   Stored in directory: /tmp/pip-ephem-wheel-cache-cghnxgs7/wheels/05/1d/28/9638cf76f9fad4ea8e5b94ce27866cf84c68a78d3c5069e1e0
2023-03-08T13:54:11,720 Successfully built commonnexus
2023-03-08T13:54:11,732 Removed build tracker: '/tmp/pip-build-tracker-ynxlbe4y'