2023-03-12T15:47:40,208 Created temporary directory: /tmp/pip-ephem-wheel-cache-4mtjx8qf
2023-03-12T15:47:40,212 Created temporary directory: /tmp/pip-build-tracker-jhiqu2lo
2023-03-12T15:47:40,212 Initialized build tracking at /tmp/pip-build-tracker-jhiqu2lo
2023-03-12T15:47:40,212 Created build tracker: /tmp/pip-build-tracker-jhiqu2lo
2023-03-12T15:47:40,212 Entered build tracker: /tmp/pip-build-tracker-jhiqu2lo
2023-03-12T15:47:40,213 Created temporary directory: /tmp/pip-wheel-70avsd0q
2023-03-12T15:47:40,217 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-12T15:47:40,220 Created temporary directory: /tmp/pip-ephem-wheel-cache-n2gvrygx
2023-03-12T15:47:40,246 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-12T15:47:40,249 2 location(s) to search for versions of pdb2pqr:
2023-03-12T15:47:40,249 * https://pypi.org/simple/pdb2pqr/
2023-03-12T15:47:40,249 * https://www.piwheels.org/simple/pdb2pqr/
2023-03-12T15:47:40,250 Fetching project page and analyzing links: https://pypi.org/simple/pdb2pqr/
2023-03-12T15:47:40,250 Getting page https://pypi.org/simple/pdb2pqr/
2023-03-12T15:47:40,252 Found index url https://pypi.org/simple
2023-03-12T15:47:40,303 Fetched page https://pypi.org/simple/pdb2pqr/ as application/vnd.pypi.simple.v1+json
2023-03-12T15:47:40,310   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/57/04/bb33da3ec20e6dcd370269adf26227bb89f603fc7049c90e817e6483d5d6/pdb2pqr-3.0.0-py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,311   Found link https://files.pythonhosted.org/packages/31/a3/fadf0c0afc577bbdcfdf145b47d2954e7594c83e1c3e150f510bf4757166/pdb2pqr-3.0.0.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.0.0
2023-03-12T15:47:40,311   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/28/f5/b122ef1691714e4c625862ed3c85aa859c4c242c3611aa99c0a271f403cb/pdb2pqr-3.0.1-py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,312   Found link https://files.pythonhosted.org/packages/03/1b/601c04590dcc7b466b8f7f49241b26907c82c3864184ce805b4e2736f814/pdb2pqr-3.0.1.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.0.1
2023-03-12T15:47:40,312   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/f0/49/fa1e47786b520ca3f1f948ea516283d86ecd0c2d3ba46dd736cc196d77c6/pdb2pqr-3.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,313   Found link https://files.pythonhosted.org/packages/6c/c1/febb6b4e8de3287e2176712a99c4095f0fdd1f9e73e21bfb0824c7ac9368/pdb2pqr-3.1.0.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.1.0
2023-03-12T15:47:40,314   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/f5/37/ffde1f53a2f3ac6907aeddbba94b04d542d6e5e70ba0692d6b424578f4bf/pdb2pqr-3.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,314   Found link https://files.pythonhosted.org/packages/09/b3/69d494c4ed5340461401abee7f61958d076084c00d2e3139c82f5048c43b/pdb2pqr-3.2.0.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.2.0
2023-03-12T15:47:40,315   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/11/44/334834c4d5919ce959a6c2f5549cb7517206dde16ae4c18f1efd7ad2e39d/pdb2pqr-3.2.3-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,316   Found link https://files.pythonhosted.org/packages/22/47/f9064d5b3c2ff71028e34a4acc3426e9b74ad9abdbfddea7f482f8c70c5d/pdb2pqr-3.2.3.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.2.3
2023-03-12T15:47:40,316   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/e0/27/2d5241c1187469486f9ee4ee7ec697a29d0c891b9547fe9cfb72abeb467a/pdb2pqr-3.3.1-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,317   Found link https://files.pythonhosted.org/packages/f6/d4/fd62fcddf45ff39e0489315104088a429a58a25381a283a1350fbb3b0b40/pdb2pqr-3.3.1.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.3.1
2023-03-12T15:47:40,317   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/1c/16/395dc9c27fe1077f932d2b6a0b32018c429bbb10932cd3c583f804fcda17/pdb2pqr-3.3.2-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,318   Found link https://files.pythonhosted.org/packages/c1/3d/f8603744a97b3a3c267594e27940fd841c118e4524eeab5d4a0168e19c6c/pdb2pqr-3.3.2.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.3.2
2023-03-12T15:47:40,318   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/36/48/3ea2d9687b55e17e941b5ffef0979d405cf92514844adca00b49d4e35ed9/pdb2pqr-3.3.3-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,319   Found link https://files.pythonhosted.org/packages/50/ca/94c0374c856d75adea48a329525815525b36399f96c432d2db9120148560/pdb2pqr-3.3.3.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.3.3
2023-03-12T15:47:40,319   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/90/e5/e7cc5d7f44dc659c5f69ed862bacb974435f5a19559aea2a13c4a86b956f/pdb2pqr-3.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,320   Found link https://files.pythonhosted.org/packages/12/96/1a9352c33ac2ad956c0a2911362670a0a64ba5f1303f54f464193ce65dc3/pdb2pqr-3.4.0.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.4.0
2023-03-12T15:47:40,321   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/8b/96/f515e275d60a13d83bc4c92a1339278ea8e9edc8ba1e2fcedf3ce96a5c5a/pdb2pqr-3.4.1-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,321   Found link https://files.pythonhosted.org/packages/49/6c/be5f979870cf606a4e3d0827d60fa7f10b98534cd1eca8c24b2fd3856102/pdb2pqr-3.4.1.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.4.1
2023-03-12T15:47:40,322   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/56/e7/e943f10fa4f6d6cdf96222ba4437d10793edfe3ede7bf387b2ce9796da71/pdb2pqr-3.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,322   Found link https://files.pythonhosted.org/packages/3b/50/ad1ff3a6683dde27b36fe249c0439163e35f281e95dcdacb116bacd21264/pdb2pqr-3.5.0.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.5.0
2023-03-12T15:47:40,323   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/bb/f2/f8e93d9feb653cb53d0b31a47b2beedc4156d560f6405a39311f736a499e/pdb2pqr-3.5.1-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,324   Found link https://files.pythonhosted.org/packages/81/18/0961c47d40e6141479d2badd19b78872b73a3112cd6988a8cedf1fbe86eb/pdb2pqr-3.5.1.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.5.1
2023-03-12T15:47:40,324   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/30/3f/e72aef35acf1c7ecad88ef16558eb59eb743d7b592872bac5932c07a7e45/pdb2pqr-3.5.2-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,325   Found link https://files.pythonhosted.org/packages/94/ad/5e9277de2a2221bbec7f8b0090a46f5e63eadd29cac9f297fe00e3ca465b/pdb2pqr-3.5.2.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.5.2
2023-03-12T15:47:40,325   Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/4a/98/2abe9c06edb8dc19bc81ec62d36dd84639dc53899ca6c3aa9dc629e46900/pdb2pqr-3.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,326   Found link https://files.pythonhosted.org/packages/47/12/82ac3b8c0b4257aa64a043ba02f0c8f99b155cfeaa7cc0ae9bc0b055f9ad/pdb2pqr-3.6.0.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.6.0
2023-03-12T15:47:40,327 Fetching project page and analyzing links: https://www.piwheels.org/simple/pdb2pqr/
2023-03-12T15:47:40,327 Getting page https://www.piwheels.org/simple/pdb2pqr/
2023-03-12T15:47:40,328 Found index url https://www.piwheels.org/simple
2023-03-12T15:47:40,511 Fetched page https://www.piwheels.org/simple/pdb2pqr/ as text/html
2023-03-12T15:47:40,516   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.5.2-py2.py3-none-any.whl#sha256=f622cba8f45540c1af9c869d9ffd6b225a64b5ce97357f09781387527378c696 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,516   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.5.1-py2.py3-none-any.whl#sha256=c38e3e5863e0ecc7feb6d853fb8442c764a0831820bd9a7240aed9a267545573 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,516   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.5.0-py2.py3-none-any.whl#sha256=1d0185f3350d68f23e18f0f4f2c2d8ad625b2762fc92273b1eaaed7893558ee3 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,516   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.4.1-py2.py3-none-any.whl#sha256=4e8973c4ca7695b4c84ac65a4a21fb289edf192c67fbdfd2ed90cc41df799b12 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,517   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.4.0-py2.py3-none-any.whl#sha256=66d51bc3ed423ed50cb937684ad24cf7fd09f3a5fbe2c5c5fb543d8b8b8593d7 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,517   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.3.3-py2.py3-none-any.whl#sha256=f0ca1a26dd987919923b43c549d287dd1a737e9bf2a3c73e7f1b26d9019d8c8b (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,517   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.3.2-py2.py3-none-any.whl#sha256=bbaecead433479ce317d803f228dfd566fb8b8a8dd873136ea9bbe27c7dffcbd (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,517   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.3.1-py2.py3-none-any.whl#sha256=19e80123ca7c1b04e3819c10d57115c440f15abfd004052ae03226e8b2731f6a (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,517   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.2.3-py2.py3-none-any.whl#sha256=455d630eef5f5f6a1b65686d210d53e978e160a40de89a83d93c4308b7e6099e (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,518   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.2.0-py2.py3-none-any.whl#sha256=7a2f4fe33d3598d52b6895d6635c380179ed5ade036c7b83ee26765336a0b187 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,518   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.1.0-py2.py3-none-any.whl#sha256=ef058118954eb0d5fc882c23a6ab8cf132f8d6a60409dd8cf022efb3f4d225ef (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,518   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.0.1-py3-none-any.whl#sha256=e59b47a1ba797bb5d830ae52bfdf563c14aa0016c439e3e35cafa3aa22a3e260 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,518   Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.0.0-py3-none-any.whl#sha256=a02bc4a4de53569304213bc157fcbe9c3c1580dcf7b07aa5c20974ca21550713 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5)
2023-03-12T15:47:40,518 Skipping link: not a file: https://www.piwheels.org/simple/pdb2pqr/
2023-03-12T15:47:40,519 Skipping link: not a file: https://pypi.org/simple/pdb2pqr/
2023-03-12T15:47:40,539 Given no hashes to check 1 links for project 'pdb2pqr': discarding no candidates
2023-03-12T15:47:40,555 Collecting pdb2pqr==3.6.0
2023-03-12T15:47:40,558   Created temporary directory: /tmp/pip-unpack-fnle4oav
2023-03-12T15:47:40,628   Downloading pdb2pqr-3.6.0.tar.gz (13.2 MB)
2023-03-12T15:47:43,941   Added pdb2pqr==3.6.0 from https://files.pythonhosted.org/packages/47/12/82ac3b8c0b4257aa64a043ba02f0c8f99b155cfeaa7cc0ae9bc0b055f9ad/pdb2pqr-3.6.0.tar.gz to build tracker '/tmp/pip-build-tracker-jhiqu2lo'
2023-03-12T15:47:43,945   Created temporary directory: /tmp/pip-build-env-p9uxp0ks
2023-03-12T15:47:43,956   Installing build dependencies: started
2023-03-12T15:47:43,957   Running command pip subprocess to install build dependencies
2023-03-12T15:47:45,192   Using pip 23.0.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-03-12T15:47:45,769   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-12T15:47:45,796   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-12T15:47:47,530   Collecting setuptools>=40.8.0
2023-03-12T15:47:47,666     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.6.0-py3-none-any.whl (1.1 MB)
2023-03-12T15:47:47,952   Collecting wheel
2023-03-12T15:47:47,970     Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB)
2023-03-12T15:47:49,751   Installing collected packages: wheel, setuptools
2023-03-12T15:47:49,900     Creating /tmp/pip-build-env-p9uxp0ks/overlay/bin
2023-03-12T15:47:49,902     changing mode of /tmp/pip-build-env-p9uxp0ks/overlay/bin/wheel to 755
2023-03-12T15:47:52,178   Successfully installed setuptools-67.6.0 wheel-0.38.4
2023-03-12T15:47:52,661   Installing build dependencies: finished with status 'done'
2023-03-12T15:47:52,667   Getting requirements to build wheel: started
2023-03-12T15:47:52,668   Running command Getting requirements to build wheel
2023-03-12T15:47:53,281   running egg_info
2023-03-12T15:47:53,288   writing pdb2pqr.egg-info/PKG-INFO
2023-03-12T15:47:53,290   writing dependency_links to pdb2pqr.egg-info/dependency_links.txt
2023-03-12T15:47:53,293   writing entry points to pdb2pqr.egg-info/entry_points.txt
2023-03-12T15:47:53,294   writing requirements to pdb2pqr.egg-info/requires.txt
2023-03-12T15:47:53,296   writing top-level names to pdb2pqr.egg-info/top_level.txt
2023-03-12T15:47:53,326   reading manifest file 'pdb2pqr.egg-info/SOURCES.txt'
2023-03-12T15:47:53,349   reading manifest template 'MANIFEST.in'
2023-03-12T15:47:53,708   adding license file 'LICENSE.md'
2023-03-12T15:47:53,708   adding license file 'COPYING'
2023-03-12T15:47:53,718   writing manifest file 'pdb2pqr.egg-info/SOURCES.txt'
2023-03-12T15:47:53,781   Getting requirements to build wheel: finished with status 'done'
2023-03-12T15:47:53,791   Created temporary directory: /tmp/pip-modern-metadata-7e_bptlu
2023-03-12T15:47:53,794   Preparing metadata (pyproject.toml): started
2023-03-12T15:47:53,795   Running command Preparing metadata (pyproject.toml)
2023-03-12T15:47:54,335   running dist_info
2023-03-12T15:47:54,354   creating /tmp/pip-modern-metadata-7e_bptlu/pdb2pqr.egg-info
2023-03-12T15:47:54,359   writing /tmp/pip-modern-metadata-7e_bptlu/pdb2pqr.egg-info/PKG-INFO
2023-03-12T15:47:54,362   writing dependency_links to /tmp/pip-modern-metadata-7e_bptlu/pdb2pqr.egg-info/dependency_links.txt
2023-03-12T15:47:54,364   writing entry points to /tmp/pip-modern-metadata-7e_bptlu/pdb2pqr.egg-info/entry_points.txt
2023-03-12T15:47:54,366   writing requirements to /tmp/pip-modern-metadata-7e_bptlu/pdb2pqr.egg-info/requires.txt
2023-03-12T15:47:54,367   writing top-level names to /tmp/pip-modern-metadata-7e_bptlu/pdb2pqr.egg-info/top_level.txt
2023-03-12T15:47:54,368   writing manifest file '/tmp/pip-modern-metadata-7e_bptlu/pdb2pqr.egg-info/SOURCES.txt'
2023-03-12T15:47:54,396   reading manifest file '/tmp/pip-modern-metadata-7e_bptlu/pdb2pqr.egg-info/SOURCES.txt'
2023-03-12T15:47:54,398   reading manifest template 'MANIFEST.in'
2023-03-12T15:47:54,745   adding license file 'LICENSE.md'
2023-03-12T15:47:54,745   adding license file 'COPYING'
2023-03-12T15:47:54,752   writing manifest file '/tmp/pip-modern-metadata-7e_bptlu/pdb2pqr.egg-info/SOURCES.txt'
2023-03-12T15:47:54,754   creating '/tmp/pip-modern-metadata-7e_bptlu/pdb2pqr-3.6.0.dist-info'
2023-03-12T15:47:55,014   Preparing metadata (pyproject.toml): finished with status 'done'
2023-03-12T15:47:55,022   Source in /tmp/pip-wheel-70avsd0q/pdb2pqr_898571d80d504222ae1e165da8b9ea0d has version 3.6.0, which satisfies requirement pdb2pqr==3.6.0 from https://files.pythonhosted.org/packages/47/12/82ac3b8c0b4257aa64a043ba02f0c8f99b155cfeaa7cc0ae9bc0b055f9ad/pdb2pqr-3.6.0.tar.gz
2023-03-12T15:47:55,023   Removed pdb2pqr==3.6.0 from https://files.pythonhosted.org/packages/47/12/82ac3b8c0b4257aa64a043ba02f0c8f99b155cfeaa7cc0ae9bc0b055f9ad/pdb2pqr-3.6.0.tar.gz from build tracker '/tmp/pip-build-tracker-jhiqu2lo'
2023-03-12T15:47:55,029 Created temporary directory: /tmp/pip-unpack-r5dca3uf
2023-03-12T15:47:55,030 Building wheels for collected packages: pdb2pqr
2023-03-12T15:47:55,035   Created temporary directory: /tmp/pip-wheel-uezue6g2
2023-03-12T15:47:55,035   Destination directory: /tmp/pip-wheel-uezue6g2
2023-03-12T15:47:55,038   Building wheel for pdb2pqr (pyproject.toml): started
2023-03-12T15:47:55,039   Running command Building wheel for pdb2pqr (pyproject.toml)
2023-03-12T15:47:55,752   running bdist_wheel
2023-03-12T15:47:55,791   running build
2023-03-12T15:47:55,791   running build_py
2023-03-12T15:47:55,801   creating build
2023-03-12T15:47:55,801   creating build/lib
2023-03-12T15:47:55,802   creating build/lib/pdb2pqr
2023-03-12T15:47:55,804   copying pdb2pqr/inputgen.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,807   copying pdb2pqr/na.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,809   copying pdb2pqr/biomolecule.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,812   copying pdb2pqr/utilities.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,815   copying pdb2pqr/pdb.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,820   copying pdb2pqr/residue.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,822   copying pdb2pqr/definitions.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,824   copying pdb2pqr/_version.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,826   copying pdb2pqr/forcefield.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,829   copying pdb2pqr/quatfit.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,832   copying pdb2pqr/config.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,834   copying pdb2pqr/psize.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,836   copying pdb2pqr/debump.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,839   copying pdb2pqr/__init__.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,841   copying pdb2pqr/run.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,843   copying pdb2pqr/cells.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,845   copying pdb2pqr/structures.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,848   copying pdb2pqr/topology.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,851   copying pdb2pqr/main.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,854   copying pdb2pqr/__main__.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,855   copying pdb2pqr/aa.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,859   copying pdb2pqr/io.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,862   copying pdb2pqr/cif.py -> build/lib/pdb2pqr
2023-03-12T15:47:55,866   creating build/lib/pdb2pqr/ligand
2023-03-12T15:47:55,867   copying pdb2pqr/ligand/peoe.py -> build/lib/pdb2pqr/ligand
2023-03-12T15:47:55,869   copying pdb2pqr/ligand/__init__.py -> build/lib/pdb2pqr/ligand
2023-03-12T15:47:55,871   copying pdb2pqr/ligand/topology.py -> build/lib/pdb2pqr/ligand
2023-03-12T15:47:55,873   copying pdb2pqr/ligand/mol2.py -> build/lib/pdb2pqr/ligand
2023-03-12T15:47:55,877   creating build/lib/pdb2pqr/hydrogens
2023-03-12T15:47:55,877   copying pdb2pqr/hydrogens/__init__.py -> build/lib/pdb2pqr/hydrogens
2023-03-12T15:47:55,881   copying pdb2pqr/hydrogens/structures.py -> build/lib/pdb2pqr/hydrogens
2023-03-12T15:47:55,885   copying pdb2pqr/hydrogens/optimize.py -> build/lib/pdb2pqr/hydrogens
2023-03-12T15:47:55,891   creating build/lib/pdb2pqr/dat
2023-03-12T15:47:55,892   copying pdb2pqr/dat/AA.xml -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,897   copying pdb2pqr/dat/TOPOLOGY.xml -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,901   copying pdb2pqr/dat/HYDROGENS.xml -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,903   copying pdb2pqr/dat/PATCHES.xml -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,907   copying pdb2pqr/dat/NA.xml -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,911   copying pdb2pqr/dat/SWANSON.DAT -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,914   copying pdb2pqr/dat/PEOEPB.DAT -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,919   copying pdb2pqr/dat/CHARMM.DAT -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,923   copying pdb2pqr/dat/AMBER.DAT -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,927   copying pdb2pqr/dat/TYL06.DAT -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,932   copying pdb2pqr/dat/PARSE.DAT -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,936   copying pdb2pqr/dat/CHARMM.names -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,939   copying pdb2pqr/dat/PEOEPB.names -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,941   copying pdb2pqr/dat/TYL06.names -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,944   copying pdb2pqr/dat/AMBER.names -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,947   copying pdb2pqr/dat/PARSE.names -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,949   copying pdb2pqr/dat/SWANSON.names -> build/lib/pdb2pqr/dat
2023-03-12T15:47:55,971   installing to build/bdist.linux-armv7l/wheel
2023-03-12T15:47:55,972   running install
2023-03-12T15:47:55,997   running install_lib
2023-03-12T15:47:56,004   creating build/bdist.linux-armv7l
2023-03-12T15:47:56,005   creating build/bdist.linux-armv7l/wheel
2023-03-12T15:47:56,007   creating build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,008   copying build/lib/pdb2pqr/inputgen.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,012   copying build/lib/pdb2pqr/na.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,015   creating build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,016   copying build/lib/pdb2pqr/dat/AA.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,020   copying build/lib/pdb2pqr/dat/CHARMM.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,022   copying build/lib/pdb2pqr/dat/PEOEPB.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,024   copying build/lib/pdb2pqr/dat/SWANSON.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,027   copying build/lib/pdb2pqr/dat/PEOEPB.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,030   copying build/lib/pdb2pqr/dat/CHARMM.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,034   copying build/lib/pdb2pqr/dat/TOPOLOGY.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,038   copying build/lib/pdb2pqr/dat/TYL06.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,039   copying build/lib/pdb2pqr/dat/AMBER.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,043   copying build/lib/pdb2pqr/dat/AMBER.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,045   copying build/lib/pdb2pqr/dat/TYL06.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,050   copying build/lib/pdb2pqr/dat/HYDROGENS.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,053   copying build/lib/pdb2pqr/dat/PARSE.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,055   copying build/lib/pdb2pqr/dat/PARSE.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,058   copying build/lib/pdb2pqr/dat/PATCHES.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,061   copying build/lib/pdb2pqr/dat/SWANSON.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,063   copying build/lib/pdb2pqr/dat/NA.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat
2023-03-12T15:47:56,066   copying build/lib/pdb2pqr/biomolecule.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,069   copying build/lib/pdb2pqr/utilities.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,072   copying build/lib/pdb2pqr/pdb.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,077   copying build/lib/pdb2pqr/residue.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,080   copying build/lib/pdb2pqr/definitions.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,082   copying build/lib/pdb2pqr/_version.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,084   copying build/lib/pdb2pqr/forcefield.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,088   copying build/lib/pdb2pqr/quatfit.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,091   copying build/lib/pdb2pqr/config.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,093   copying build/lib/pdb2pqr/psize.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,095   copying build/lib/pdb2pqr/debump.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,098   copying build/lib/pdb2pqr/__init__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,100   copying build/lib/pdb2pqr/run.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,102   copying build/lib/pdb2pqr/cells.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,104   copying build/lib/pdb2pqr/structures.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,107   copying build/lib/pdb2pqr/topology.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,110   copying build/lib/pdb2pqr/main.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,113   copying build/lib/pdb2pqr/__main__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,116   creating build/bdist.linux-armv7l/wheel/pdb2pqr/ligand
2023-03-12T15:47:56,117   copying build/lib/pdb2pqr/ligand/peoe.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand
2023-03-12T15:47:56,119   copying build/lib/pdb2pqr/ligand/__init__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand
2023-03-12T15:47:56,122   copying build/lib/pdb2pqr/ligand/topology.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand
2023-03-12T15:47:56,123   copying build/lib/pdb2pqr/ligand/mol2.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand
2023-03-12T15:47:56,126   copying build/lib/pdb2pqr/aa.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,130   creating build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens
2023-03-12T15:47:56,131   copying build/lib/pdb2pqr/hydrogens/__init__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens
2023-03-12T15:47:56,134   copying build/lib/pdb2pqr/hydrogens/structures.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens
2023-03-12T15:47:56,138   copying build/lib/pdb2pqr/hydrogens/optimize.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens
2023-03-12T15:47:56,141   copying build/lib/pdb2pqr/io.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,144   copying build/lib/pdb2pqr/cif.py -> build/bdist.linux-armv7l/wheel/pdb2pqr
2023-03-12T15:47:56,147   running install_egg_info
2023-03-12T15:47:56,176   running egg_info
2023-03-12T15:47:56,181   writing pdb2pqr.egg-info/PKG-INFO
2023-03-12T15:47:56,182   writing dependency_links to pdb2pqr.egg-info/dependency_links.txt
2023-03-12T15:47:56,184   writing entry points to pdb2pqr.egg-info/entry_points.txt
2023-03-12T15:47:56,186   writing requirements to pdb2pqr.egg-info/requires.txt
2023-03-12T15:47:56,187   writing top-level names to pdb2pqr.egg-info/top_level.txt
2023-03-12T15:47:56,201   reading manifest file 'pdb2pqr.egg-info/SOURCES.txt'
2023-03-12T15:47:56,207   reading manifest template 'MANIFEST.in'
2023-03-12T15:47:56,553   adding license file 'LICENSE.md'
2023-03-12T15:47:56,553   adding license file 'COPYING'
2023-03-12T15:47:56,563   writing manifest file 'pdb2pqr.egg-info/SOURCES.txt'
2023-03-12T15:47:56,565   Copying pdb2pqr.egg-info to build/bdist.linux-armv7l/wheel/pdb2pqr-3.6.0-py3.9.egg-info
2023-03-12T15:47:56,579   running install_scripts
2023-03-12T15:47:56,602   creating build/bdist.linux-armv7l/wheel/pdb2pqr-3.6.0.dist-info/WHEEL
2023-03-12T15:47:56,606   creating '/tmp/pip-wheel-uezue6g2/.tmp-rp1yisu9/pdb2pqr-3.6.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-03-12T15:47:56,609   adding 'pdb2pqr/__init__.py'
2023-03-12T15:47:56,610   adding 'pdb2pqr/__main__.py'
2023-03-12T15:47:56,612   adding 'pdb2pqr/_version.py'
2023-03-12T15:47:56,616   adding 'pdb2pqr/aa.py'
2023-03-12T15:47:56,621   adding 'pdb2pqr/biomolecule.py'
2023-03-12T15:47:56,623   adding 'pdb2pqr/cells.py'
2023-03-12T15:47:56,627   adding 'pdb2pqr/cif.py'
2023-03-12T15:47:56,629   adding 'pdb2pqr/config.py'
2023-03-12T15:47:56,631   adding 'pdb2pqr/debump.py'
2023-03-12T15:47:56,633   adding 'pdb2pqr/definitions.py'
2023-03-12T15:47:56,637   adding 'pdb2pqr/forcefield.py'
2023-03-12T15:47:56,640   adding 'pdb2pqr/inputgen.py'
2023-03-12T15:47:56,643   adding 'pdb2pqr/io.py'
2023-03-12T15:47:56,647   adding 'pdb2pqr/main.py'
2023-03-12T15:47:56,649   adding 'pdb2pqr/na.py'
2023-03-12T15:47:56,658   adding 'pdb2pqr/pdb.py'
2023-03-12T15:47:56,661   adding 'pdb2pqr/psize.py'
2023-03-12T15:47:56,664   adding 'pdb2pqr/quatfit.py'
2023-03-12T15:47:56,666   adding 'pdb2pqr/residue.py'
2023-03-12T15:47:56,668   adding 'pdb2pqr/run.py'
2023-03-12T15:47:56,670   adding 'pdb2pqr/structures.py'
2023-03-12T15:47:56,672   adding 'pdb2pqr/topology.py'
2023-03-12T15:47:56,674   adding 'pdb2pqr/utilities.py'
2023-03-12T15:47:56,678   adding 'pdb2pqr/dat/AA.xml'
2023-03-12T15:47:56,686   adding 'pdb2pqr/dat/AMBER.DAT'
2023-03-12T15:47:56,688   adding 'pdb2pqr/dat/AMBER.names'
2023-03-12T15:47:56,696   adding 'pdb2pqr/dat/CHARMM.DAT'
2023-03-12T15:47:56,698   adding 'pdb2pqr/dat/CHARMM.names'
2023-03-12T15:47:56,699   adding 'pdb2pqr/dat/HYDROGENS.xml'
2023-03-12T15:47:56,702   adding 'pdb2pqr/dat/NA.xml'
2023-03-12T15:47:56,705   adding 'pdb2pqr/dat/PARSE.DAT'
2023-03-12T15:47:56,707   adding 'pdb2pqr/dat/PARSE.names'
2023-03-12T15:47:56,709   adding 'pdb2pqr/dat/PATCHES.xml'
2023-03-12T15:47:56,714   adding 'pdb2pqr/dat/PEOEPB.DAT'
2023-03-12T15:47:56,716   adding 'pdb2pqr/dat/PEOEPB.names'
2023-03-12T15:47:56,721   adding 'pdb2pqr/dat/SWANSON.DAT'
2023-03-12T15:47:56,723   adding 'pdb2pqr/dat/SWANSON.names'
2023-03-12T15:47:56,727   adding 'pdb2pqr/dat/TOPOLOGY.xml'
2023-03-12T15:47:56,737   adding 'pdb2pqr/dat/TYL06.DAT'
2023-03-12T15:47:56,739   adding 'pdb2pqr/dat/TYL06.names'
2023-03-12T15:47:56,743   adding 'pdb2pqr/hydrogens/__init__.py'
2023-03-12T15:47:56,746   adding 'pdb2pqr/hydrogens/optimize.py'
2023-03-12T15:47:56,752   adding 'pdb2pqr/hydrogens/structures.py'
2023-03-12T15:47:56,754   adding 'pdb2pqr/ligand/__init__.py'
2023-03-12T15:47:56,757   adding 'pdb2pqr/ligand/mol2.py'
2023-03-12T15:47:56,759   adding 'pdb2pqr/ligand/peoe.py'
2023-03-12T15:47:56,760   adding 'pdb2pqr/ligand/topology.py'
2023-03-12T15:47:56,763   adding 'pdb2pqr-3.6.0.dist-info/COPYING'
2023-03-12T15:47:56,764   adding 'pdb2pqr-3.6.0.dist-info/LICENSE.md'
2023-03-12T15:47:56,765   adding 'pdb2pqr-3.6.0.dist-info/METADATA'
2023-03-12T15:47:56,766   adding 'pdb2pqr-3.6.0.dist-info/WHEEL'
2023-03-12T15:47:56,768   adding 'pdb2pqr-3.6.0.dist-info/entry_points.txt'
2023-03-12T15:47:56,769   adding 'pdb2pqr-3.6.0.dist-info/top_level.txt'
2023-03-12T15:47:56,770   adding 'pdb2pqr-3.6.0.dist-info/RECORD'
2023-03-12T15:47:56,774   removing build/bdist.linux-armv7l/wheel
2023-03-12T15:47:56,872   Building wheel for pdb2pqr (pyproject.toml): finished with status 'done'
2023-03-12T15:47:56,883   Created wheel for pdb2pqr: filename=pdb2pqr-3.6.0-py2.py3-none-any.whl size=208149 sha256=0ecb54ec96d841d7f696daa331530d89f76279f315d2c9b40bdba565adadbcbc
2023-03-12T15:47:56,884   Stored in directory: /tmp/pip-ephem-wheel-cache-n2gvrygx/wheels/8a/e3/bb/baa11c44a4b5d81ebf21fede28d566d1efeb55c13679067330
2023-03-12T15:47:56,899 Successfully built pdb2pqr
2023-03-12T15:47:56,909 Removed build tracker: '/tmp/pip-build-tracker-jhiqu2lo'