2023-03-12T21:29:22,888 Created temporary directory: /tmp/pip-ephem-wheel-cache-54zigodu 2023-03-12T21:29:22,891 Created temporary directory: /tmp/pip-build-tracker-o5zgif2k 2023-03-12T21:29:22,891 Initialized build tracking at /tmp/pip-build-tracker-o5zgif2k 2023-03-12T21:29:22,891 Created build tracker: /tmp/pip-build-tracker-o5zgif2k 2023-03-12T21:29:22,892 Entered build tracker: /tmp/pip-build-tracker-o5zgif2k 2023-03-12T21:29:22,892 Created temporary directory: /tmp/pip-wheel-mwy43gjg 2023-03-12T21:29:22,897 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-03-12T21:29:22,899 Created temporary directory: /tmp/pip-ephem-wheel-cache-w6pq4zey 2023-03-12T21:29:22,928 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-03-12T21:29:22,931 2 location(s) to search for versions of pdb2pqr: 2023-03-12T21:29:22,931 * https://pypi.org/simple/pdb2pqr/ 2023-03-12T21:29:22,931 * https://www.piwheels.org/simple/pdb2pqr/ 2023-03-12T21:29:22,932 Fetching project page and analyzing links: https://pypi.org/simple/pdb2pqr/ 2023-03-12T21:29:22,932 Getting page https://pypi.org/simple/pdb2pqr/ 2023-03-12T21:29:22,934 Found index url https://pypi.org/simple 2023-03-12T21:29:22,988 Fetched page https://pypi.org/simple/pdb2pqr/ as application/vnd.pypi.simple.v1+json 2023-03-12T21:29:22,994 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/57/04/bb33da3ec20e6dcd370269adf26227bb89f603fc7049c90e817e6483d5d6/pdb2pqr-3.0.0-py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:22,994 Found link https://files.pythonhosted.org/packages/31/a3/fadf0c0afc577bbdcfdf145b47d2954e7594c83e1c3e150f510bf4757166/pdb2pqr-3.0.0.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.0.0 2023-03-12T21:29:22,995 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/28/f5/b122ef1691714e4c625862ed3c85aa859c4c242c3611aa99c0a271f403cb/pdb2pqr-3.0.1-py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:22,995 Found link https://files.pythonhosted.org/packages/03/1b/601c04590dcc7b466b8f7f49241b26907c82c3864184ce805b4e2736f814/pdb2pqr-3.0.1.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.0.1 2023-03-12T21:29:22,996 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/f0/49/fa1e47786b520ca3f1f948ea516283d86ecd0c2d3ba46dd736cc196d77c6/pdb2pqr-3.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:22,996 Found link https://files.pythonhosted.org/packages/6c/c1/febb6b4e8de3287e2176712a99c4095f0fdd1f9e73e21bfb0824c7ac9368/pdb2pqr-3.1.0.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.1.0 2023-03-12T21:29:22,996 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/f5/37/ffde1f53a2f3ac6907aeddbba94b04d542d6e5e70ba0692d6b424578f4bf/pdb2pqr-3.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:22,997 Found link https://files.pythonhosted.org/packages/09/b3/69d494c4ed5340461401abee7f61958d076084c00d2e3139c82f5048c43b/pdb2pqr-3.2.0.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.2.0 2023-03-12T21:29:22,997 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/11/44/334834c4d5919ce959a6c2f5549cb7517206dde16ae4c18f1efd7ad2e39d/pdb2pqr-3.2.3-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:22,998 Found link https://files.pythonhosted.org/packages/22/47/f9064d5b3c2ff71028e34a4acc3426e9b74ad9abdbfddea7f482f8c70c5d/pdb2pqr-3.2.3.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.2.3 2023-03-12T21:29:22,998 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/e0/27/2d5241c1187469486f9ee4ee7ec697a29d0c891b9547fe9cfb72abeb467a/pdb2pqr-3.3.1-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:22,998 Found link https://files.pythonhosted.org/packages/f6/d4/fd62fcddf45ff39e0489315104088a429a58a25381a283a1350fbb3b0b40/pdb2pqr-3.3.1.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.3.1 2023-03-12T21:29:22,999 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/1c/16/395dc9c27fe1077f932d2b6a0b32018c429bbb10932cd3c583f804fcda17/pdb2pqr-3.3.2-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:22,999 Found link https://files.pythonhosted.org/packages/c1/3d/f8603744a97b3a3c267594e27940fd841c118e4524eeab5d4a0168e19c6c/pdb2pqr-3.3.2.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.3.2 2023-03-12T21:29:23,000 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/36/48/3ea2d9687b55e17e941b5ffef0979d405cf92514844adca00b49d4e35ed9/pdb2pqr-3.3.3-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,000 Found link https://files.pythonhosted.org/packages/50/ca/94c0374c856d75adea48a329525815525b36399f96c432d2db9120148560/pdb2pqr-3.3.3.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.3.3 2023-03-12T21:29:23,000 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/90/e5/e7cc5d7f44dc659c5f69ed862bacb974435f5a19559aea2a13c4a86b956f/pdb2pqr-3.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,001 Found link https://files.pythonhosted.org/packages/12/96/1a9352c33ac2ad956c0a2911362670a0a64ba5f1303f54f464193ce65dc3/pdb2pqr-3.4.0.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.4.0 2023-03-12T21:29:23,001 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/8b/96/f515e275d60a13d83bc4c92a1339278ea8e9edc8ba1e2fcedf3ce96a5c5a/pdb2pqr-3.4.1-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,002 Found link https://files.pythonhosted.org/packages/49/6c/be5f979870cf606a4e3d0827d60fa7f10b98534cd1eca8c24b2fd3856102/pdb2pqr-3.4.1.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.4.1 2023-03-12T21:29:23,002 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/56/e7/e943f10fa4f6d6cdf96222ba4437d10793edfe3ede7bf387b2ce9796da71/pdb2pqr-3.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,003 Found link https://files.pythonhosted.org/packages/3b/50/ad1ff3a6683dde27b36fe249c0439163e35f281e95dcdacb116bacd21264/pdb2pqr-3.5.0.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.5.0 2023-03-12T21:29:23,003 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/bb/f2/f8e93d9feb653cb53d0b31a47b2beedc4156d560f6405a39311f736a499e/pdb2pqr-3.5.1-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,003 Found link https://files.pythonhosted.org/packages/81/18/0961c47d40e6141479d2badd19b78872b73a3112cd6988a8cedf1fbe86eb/pdb2pqr-3.5.1.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.5.1 2023-03-12T21:29:23,004 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/30/3f/e72aef35acf1c7ecad88ef16558eb59eb743d7b592872bac5932c07a7e45/pdb2pqr-3.5.2-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,004 Found link https://files.pythonhosted.org/packages/94/ad/5e9277de2a2221bbec7f8b0090a46f5e63eadd29cac9f297fe00e3ca465b/pdb2pqr-3.5.2.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.5.2 2023-03-12T21:29:23,004 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/4a/98/2abe9c06edb8dc19bc81ec62d36dd84639dc53899ca6c3aa9dc629e46900/pdb2pqr-3.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,005 Found link https://files.pythonhosted.org/packages/47/12/82ac3b8c0b4257aa64a043ba02f0c8f99b155cfeaa7cc0ae9bc0b055f9ad/pdb2pqr-3.6.0.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.6.0 2023-03-12T21:29:23,005 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/3a/7c/3bbf1f414f70cbb14b1ee4da74061ae5a0323cd4cb037a76642fa23d2e2f/pdb2pqr-3.6.1-py2.py3-none-any.whl (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,006 Found link https://files.pythonhosted.org/packages/c0/c7/1c0359146d4c51c1250f5b37f6edf655692a99f19f307828d9aaa761fd68/pdb2pqr-3.6.1.tar.gz (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.6.1 2023-03-12T21:29:23,006 Fetching project page and analyzing links: https://www.piwheels.org/simple/pdb2pqr/ 2023-03-12T21:29:23,006 Getting page https://www.piwheels.org/simple/pdb2pqr/ 2023-03-12T21:29:23,007 Found index url https://www.piwheels.org/simple 2023-03-12T21:29:23,169 Fetched page https://www.piwheels.org/simple/pdb2pqr/ as text/html 2023-03-12T21:29:23,176 Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.6.0-py2.py3-none-any.whl#sha256=0ecb54ec96d841d7f696daa331530d89f76279f315d2c9b40bdba565adadbcbc (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,177 Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.5.2-py2.py3-none-any.whl#sha256=f622cba8f45540c1af9c869d9ffd6b225a64b5ce97357f09781387527378c696 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,177 Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.5.1-py2.py3-none-any.whl#sha256=c38e3e5863e0ecc7feb6d853fb8442c764a0831820bd9a7240aed9a267545573 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,177 Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.5.0-py2.py3-none-any.whl#sha256=1d0185f3350d68f23e18f0f4f2c2d8ad625b2762fc92273b1eaaed7893558ee3 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,178 Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.4.1-py2.py3-none-any.whl#sha256=4e8973c4ca7695b4c84ac65a4a21fb289edf192c67fbdfd2ed90cc41df799b12 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,178 Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.4.0-py2.py3-none-any.whl#sha256=66d51bc3ed423ed50cb937684ad24cf7fd09f3a5fbe2c5c5fb543d8b8b8593d7 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,178 Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.3.3-py2.py3-none-any.whl#sha256=f0ca1a26dd987919923b43c549d287dd1a737e9bf2a3c73e7f1b26d9019d8c8b (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,178 Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.3.2-py2.py3-none-any.whl#sha256=bbaecead433479ce317d803f228dfd566fb8b8a8dd873136ea9bbe27c7dffcbd (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,179 Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.3.1-py2.py3-none-any.whl#sha256=19e80123ca7c1b04e3819c10d57115c440f15abfd004052ae03226e8b2731f6a (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,179 Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.2.3-py2.py3-none-any.whl#sha256=455d630eef5f5f6a1b65686d210d53e978e160a40de89a83d93c4308b7e6099e (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,179 Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.2.0-py2.py3-none-any.whl#sha256=7a2f4fe33d3598d52b6895d6635c380179ed5ade036c7b83ee26765336a0b187 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,180 Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.1.0-py2.py3-none-any.whl#sha256=ef058118954eb0d5fc882c23a6ab8cf132f8d6a60409dd8cf022efb3f4d225ef (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,180 Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.0.1-py3-none-any.whl#sha256=e59b47a1ba797bb5d830ae52bfdf563c14aa0016c439e3e35cafa3aa22a3e260 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,180 Skipping link: No binaries permitted for pdb2pqr: https://www.piwheels.org/simple/pdb2pqr/pdb2pqr-3.0.0-py3-none-any.whl#sha256=a02bc4a4de53569304213bc157fcbe9c3c1580dcf7b07aa5c20974ca21550713 (from https://www.piwheels.org/simple/pdb2pqr/) (requires-python:>=3.5) 2023-03-12T21:29:23,181 Skipping link: not a file: https://www.piwheels.org/simple/pdb2pqr/ 2023-03-12T21:29:23,181 Skipping link: not a file: https://pypi.org/simple/pdb2pqr/ 2023-03-12T21:29:23,212 Given no hashes to check 1 links for project 'pdb2pqr': discarding no candidates 2023-03-12T21:29:23,239 Collecting pdb2pqr==3.6.1 2023-03-12T21:29:23,242 Created temporary directory: /tmp/pip-unpack-gg0t60o7 2023-03-12T21:29:23,308 Downloading pdb2pqr-3.6.1.tar.gz (13.2 MB) 2023-03-12T21:29:26,734 Added pdb2pqr==3.6.1 from https://files.pythonhosted.org/packages/c0/c7/1c0359146d4c51c1250f5b37f6edf655692a99f19f307828d9aaa761fd68/pdb2pqr-3.6.1.tar.gz to build tracker '/tmp/pip-build-tracker-o5zgif2k' 2023-03-12T21:29:26,738 Created temporary directory: /tmp/pip-build-env-tswnbd4o 2023-03-12T21:29:26,749 Installing build dependencies: started 2023-03-12T21:29:26,750 Running command pip subprocess to install build dependencies 2023-03-12T21:29:27,966 Using pip 23.0.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-03-12T21:29:28,556 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-03-12T21:29:28,583 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-03-12T21:29:30,281 Collecting setuptools>=40.8.0 2023-03-12T21:29:30,385 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.6.0-py3-none-any.whl (1.1 MB) 2023-03-12T21:29:30,652 Collecting wheel 2023-03-12T21:29:30,670 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2023-03-12T21:29:32,443 Installing collected packages: wheel, setuptools 2023-03-12T21:29:32,596 Creating /tmp/pip-build-env-tswnbd4o/overlay/bin 2023-03-12T21:29:32,599 changing mode of /tmp/pip-build-env-tswnbd4o/overlay/bin/wheel to 755 2023-03-12T21:29:34,950 Successfully installed setuptools-67.6.0 wheel-0.38.4 2023-03-12T21:29:35,432 Installing build dependencies: finished with status 'done' 2023-03-12T21:29:35,438 Getting requirements to build wheel: started 2023-03-12T21:29:35,439 Running command Getting requirements to build wheel 2023-03-12T21:29:36,046 running egg_info 2023-03-12T21:29:36,054 writing pdb2pqr.egg-info/PKG-INFO 2023-03-12T21:29:36,056 writing dependency_links to pdb2pqr.egg-info/dependency_links.txt 2023-03-12T21:29:36,058 writing entry points to pdb2pqr.egg-info/entry_points.txt 2023-03-12T21:29:36,060 writing requirements to pdb2pqr.egg-info/requires.txt 2023-03-12T21:29:36,061 writing top-level names to pdb2pqr.egg-info/top_level.txt 2023-03-12T21:29:36,090 reading manifest file 'pdb2pqr.egg-info/SOURCES.txt' 2023-03-12T21:29:36,112 reading manifest template 'MANIFEST.in' 2023-03-12T21:29:36,476 adding license file 'LICENSE.md' 2023-03-12T21:29:36,476 adding license file 'COPYING' 2023-03-12T21:29:36,486 writing manifest file 'pdb2pqr.egg-info/SOURCES.txt' 2023-03-12T21:29:36,551 Getting requirements to build wheel: finished with status 'done' 2023-03-12T21:29:36,561 Created temporary directory: /tmp/pip-modern-metadata-c9r8cwlq 2023-03-12T21:29:36,564 Preparing metadata (pyproject.toml): started 2023-03-12T21:29:36,565 Running command Preparing metadata (pyproject.toml) 2023-03-12T21:29:37,110 running dist_info 2023-03-12T21:29:37,130 creating /tmp/pip-modern-metadata-c9r8cwlq/pdb2pqr.egg-info 2023-03-12T21:29:37,135 writing /tmp/pip-modern-metadata-c9r8cwlq/pdb2pqr.egg-info/PKG-INFO 2023-03-12T21:29:37,137 writing dependency_links to /tmp/pip-modern-metadata-c9r8cwlq/pdb2pqr.egg-info/dependency_links.txt 2023-03-12T21:29:37,140 writing entry points to /tmp/pip-modern-metadata-c9r8cwlq/pdb2pqr.egg-info/entry_points.txt 2023-03-12T21:29:37,141 writing requirements to /tmp/pip-modern-metadata-c9r8cwlq/pdb2pqr.egg-info/requires.txt 2023-03-12T21:29:37,142 writing top-level names to /tmp/pip-modern-metadata-c9r8cwlq/pdb2pqr.egg-info/top_level.txt 2023-03-12T21:29:37,144 writing manifest file '/tmp/pip-modern-metadata-c9r8cwlq/pdb2pqr.egg-info/SOURCES.txt' 2023-03-12T21:29:37,172 reading manifest file '/tmp/pip-modern-metadata-c9r8cwlq/pdb2pqr.egg-info/SOURCES.txt' 2023-03-12T21:29:37,174 reading manifest template 'MANIFEST.in' 2023-03-12T21:29:37,527 adding license file 'LICENSE.md' 2023-03-12T21:29:37,527 adding license file 'COPYING' 2023-03-12T21:29:37,535 writing manifest file '/tmp/pip-modern-metadata-c9r8cwlq/pdb2pqr.egg-info/SOURCES.txt' 2023-03-12T21:29:37,536 creating '/tmp/pip-modern-metadata-c9r8cwlq/pdb2pqr-3.6.1.dist-info' 2023-03-12T21:29:37,796 Preparing metadata (pyproject.toml): finished with status 'done' 2023-03-12T21:29:37,804 Source in /tmp/pip-wheel-mwy43gjg/pdb2pqr_db8f4603bb1648c6926a01cfb18a117e has version 3.6.1, which satisfies requirement pdb2pqr==3.6.1 from https://files.pythonhosted.org/packages/c0/c7/1c0359146d4c51c1250f5b37f6edf655692a99f19f307828d9aaa761fd68/pdb2pqr-3.6.1.tar.gz 2023-03-12T21:29:37,805 Removed pdb2pqr==3.6.1 from https://files.pythonhosted.org/packages/c0/c7/1c0359146d4c51c1250f5b37f6edf655692a99f19f307828d9aaa761fd68/pdb2pqr-3.6.1.tar.gz from build tracker '/tmp/pip-build-tracker-o5zgif2k' 2023-03-12T21:29:37,811 Created temporary directory: /tmp/pip-unpack-78ezv4lt 2023-03-12T21:29:37,812 Building wheels for collected packages: pdb2pqr 2023-03-12T21:29:37,817 Created temporary directory: /tmp/pip-wheel-0rz7aw3s 2023-03-12T21:29:37,817 Destination directory: /tmp/pip-wheel-0rz7aw3s 2023-03-12T21:29:37,819 Building wheel for pdb2pqr (pyproject.toml): started 2023-03-12T21:29:37,820 Running command Building wheel for pdb2pqr (pyproject.toml) 2023-03-12T21:29:38,475 running bdist_wheel 2023-03-12T21:29:38,512 running build 2023-03-12T21:29:38,512 running build_py 2023-03-12T21:29:38,522 creating build 2023-03-12T21:29:38,523 creating build/lib 2023-03-12T21:29:38,524 creating build/lib/pdb2pqr 2023-03-12T21:29:38,525 copying pdb2pqr/inputgen.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,528 copying pdb2pqr/na.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,530 copying pdb2pqr/biomolecule.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,534 copying pdb2pqr/utilities.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,536 copying pdb2pqr/pdb.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,541 copying pdb2pqr/residue.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,544 copying pdb2pqr/definitions.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,546 copying pdb2pqr/_version.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,548 copying pdb2pqr/forcefield.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,552 copying pdb2pqr/quatfit.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,555 copying pdb2pqr/config.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,557 copying pdb2pqr/psize.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,560 copying pdb2pqr/debump.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,563 copying pdb2pqr/__init__.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,565 copying pdb2pqr/run.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,567 copying pdb2pqr/cells.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,569 copying pdb2pqr/structures.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,572 copying pdb2pqr/topology.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,574 copying pdb2pqr/main.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,578 copying pdb2pqr/__main__.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,580 copying pdb2pqr/aa.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,583 copying pdb2pqr/io.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,587 copying pdb2pqr/cif.py -> build/lib/pdb2pqr 2023-03-12T21:29:38,591 creating build/lib/pdb2pqr/ligand 2023-03-12T21:29:38,592 copying pdb2pqr/ligand/peoe.py -> build/lib/pdb2pqr/ligand 2023-03-12T21:29:38,595 copying pdb2pqr/ligand/__init__.py -> build/lib/pdb2pqr/ligand 2023-03-12T21:29:38,597 copying pdb2pqr/ligand/topology.py -> build/lib/pdb2pqr/ligand 2023-03-12T21:29:38,600 copying pdb2pqr/ligand/mol2.py -> build/lib/pdb2pqr/ligand 2023-03-12T21:29:38,604 creating build/lib/pdb2pqr/hydrogens 2023-03-12T21:29:38,605 copying pdb2pqr/hydrogens/__init__.py -> build/lib/pdb2pqr/hydrogens 2023-03-12T21:29:38,609 copying pdb2pqr/hydrogens/structures.py -> build/lib/pdb2pqr/hydrogens 2023-03-12T21:29:38,614 copying pdb2pqr/hydrogens/optimize.py -> build/lib/pdb2pqr/hydrogens 2023-03-12T21:29:38,621 creating build/lib/pdb2pqr/dat 2023-03-12T21:29:38,622 copying pdb2pqr/dat/AA.xml -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,627 copying pdb2pqr/dat/TOPOLOGY.xml -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,631 copying pdb2pqr/dat/HYDROGENS.xml -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,634 copying pdb2pqr/dat/PATCHES.xml -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,637 copying pdb2pqr/dat/NA.xml -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,640 copying pdb2pqr/dat/SWANSON.DAT -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,644 copying pdb2pqr/dat/PEOEPB.DAT -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,647 copying pdb2pqr/dat/CHARMM.DAT -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,651 copying pdb2pqr/dat/AMBER.DAT -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,656 copying pdb2pqr/dat/TYL06.DAT -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,660 copying pdb2pqr/dat/PARSE.DAT -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,664 copying pdb2pqr/dat/CHARMM.names -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,666 copying pdb2pqr/dat/PEOEPB.names -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,669 copying pdb2pqr/dat/TYL06.names -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,671 copying pdb2pqr/dat/AMBER.names -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,673 copying pdb2pqr/dat/PARSE.names -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,676 copying pdb2pqr/dat/SWANSON.names -> build/lib/pdb2pqr/dat 2023-03-12T21:29:38,697 installing to build/bdist.linux-armv7l/wheel 2023-03-12T21:29:38,697 running install 2023-03-12T21:29:38,722 running install_lib 2023-03-12T21:29:38,730 creating build/bdist.linux-armv7l 2023-03-12T21:29:38,730 creating build/bdist.linux-armv7l/wheel 2023-03-12T21:29:38,733 creating build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,734 copying build/lib/pdb2pqr/inputgen.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,737 copying build/lib/pdb2pqr/na.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,740 creating build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,741 copying build/lib/pdb2pqr/dat/AA.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,745 copying build/lib/pdb2pqr/dat/CHARMM.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,747 copying build/lib/pdb2pqr/dat/PEOEPB.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,749 copying build/lib/pdb2pqr/dat/SWANSON.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,753 copying build/lib/pdb2pqr/dat/PEOEPB.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,756 copying build/lib/pdb2pqr/dat/CHARMM.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,760 copying build/lib/pdb2pqr/dat/TOPOLOGY.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,765 copying build/lib/pdb2pqr/dat/TYL06.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,767 copying build/lib/pdb2pqr/dat/AMBER.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,771 copying build/lib/pdb2pqr/dat/AMBER.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,773 copying build/lib/pdb2pqr/dat/TYL06.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,777 copying build/lib/pdb2pqr/dat/HYDROGENS.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,779 copying build/lib/pdb2pqr/dat/PARSE.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,781 copying build/lib/pdb2pqr/dat/PARSE.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,784 copying build/lib/pdb2pqr/dat/PATCHES.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,787 copying build/lib/pdb2pqr/dat/SWANSON.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,789 copying build/lib/pdb2pqr/dat/NA.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2023-03-12T21:29:38,792 copying build/lib/pdb2pqr/biomolecule.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,796 copying build/lib/pdb2pqr/utilities.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,798 copying build/lib/pdb2pqr/pdb.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,803 copying build/lib/pdb2pqr/residue.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,806 copying build/lib/pdb2pqr/definitions.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,809 copying build/lib/pdb2pqr/_version.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,811 copying build/lib/pdb2pqr/forcefield.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,814 copying build/lib/pdb2pqr/quatfit.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,816 copying build/lib/pdb2pqr/config.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,819 copying build/lib/pdb2pqr/psize.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,821 copying build/lib/pdb2pqr/debump.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,824 copying build/lib/pdb2pqr/__init__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,826 copying build/lib/pdb2pqr/run.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,828 copying build/lib/pdb2pqr/cells.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,830 copying build/lib/pdb2pqr/structures.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,833 copying build/lib/pdb2pqr/topology.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,835 copying build/lib/pdb2pqr/main.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,839 copying build/lib/pdb2pqr/__main__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,841 creating build/bdist.linux-armv7l/wheel/pdb2pqr/ligand 2023-03-12T21:29:38,842 copying build/lib/pdb2pqr/ligand/peoe.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand 2023-03-12T21:29:38,844 copying build/lib/pdb2pqr/ligand/__init__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand 2023-03-12T21:29:38,847 copying build/lib/pdb2pqr/ligand/topology.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand 2023-03-12T21:29:38,849 copying build/lib/pdb2pqr/ligand/mol2.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand 2023-03-12T21:29:38,851 copying build/lib/pdb2pqr/aa.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,855 creating build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens 2023-03-12T21:29:38,856 copying build/lib/pdb2pqr/hydrogens/__init__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens 2023-03-12T21:29:38,860 copying build/lib/pdb2pqr/hydrogens/structures.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens 2023-03-12T21:29:38,863 copying build/lib/pdb2pqr/hydrogens/optimize.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens 2023-03-12T21:29:38,866 copying build/lib/pdb2pqr/io.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,869 copying build/lib/pdb2pqr/cif.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2023-03-12T21:29:38,872 running install_egg_info 2023-03-12T21:29:38,902 running egg_info 2023-03-12T21:29:38,907 writing pdb2pqr.egg-info/PKG-INFO 2023-03-12T21:29:38,908 writing dependency_links to pdb2pqr.egg-info/dependency_links.txt 2023-03-12T21:29:38,910 writing entry points to pdb2pqr.egg-info/entry_points.txt 2023-03-12T21:29:38,912 writing requirements to pdb2pqr.egg-info/requires.txt 2023-03-12T21:29:38,913 writing top-level names to pdb2pqr.egg-info/top_level.txt 2023-03-12T21:29:38,928 reading manifest file 'pdb2pqr.egg-info/SOURCES.txt' 2023-03-12T21:29:38,934 reading manifest template 'MANIFEST.in' 2023-03-12T21:29:39,274 adding license file 'LICENSE.md' 2023-03-12T21:29:39,274 adding license file 'COPYING' 2023-03-12T21:29:39,284 writing manifest file 'pdb2pqr.egg-info/SOURCES.txt' 2023-03-12T21:29:39,286 Copying pdb2pqr.egg-info to build/bdist.linux-armv7l/wheel/pdb2pqr-3.6.1-py3.9.egg-info 2023-03-12T21:29:39,298 running install_scripts 2023-03-12T21:29:39,320 creating build/bdist.linux-armv7l/wheel/pdb2pqr-3.6.1.dist-info/WHEEL 2023-03-12T21:29:39,323 creating '/tmp/pip-wheel-0rz7aw3s/.tmp-xyfkgm48/pdb2pqr-3.6.1-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-03-12T21:29:39,326 adding 'pdb2pqr/__init__.py' 2023-03-12T21:29:39,327 adding 'pdb2pqr/__main__.py' 2023-03-12T21:29:39,328 adding 'pdb2pqr/_version.py' 2023-03-12T21:29:39,331 adding 'pdb2pqr/aa.py' 2023-03-12T21:29:39,337 adding 'pdb2pqr/biomolecule.py' 2023-03-12T21:29:39,338 adding 'pdb2pqr/cells.py' 2023-03-12T21:29:39,342 adding 'pdb2pqr/cif.py' 2023-03-12T21:29:39,344 adding 'pdb2pqr/config.py' 2023-03-12T21:29:39,346 adding 'pdb2pqr/debump.py' 2023-03-12T21:29:39,348 adding 'pdb2pqr/definitions.py' 2023-03-12T21:29:39,352 adding 'pdb2pqr/forcefield.py' 2023-03-12T21:29:39,355 adding 'pdb2pqr/inputgen.py' 2023-03-12T21:29:39,358 adding 'pdb2pqr/io.py' 2023-03-12T21:29:39,362 adding 'pdb2pqr/main.py' 2023-03-12T21:29:39,363 adding 'pdb2pqr/na.py' 2023-03-12T21:29:39,372 adding 'pdb2pqr/pdb.py' 2023-03-12T21:29:39,376 adding 'pdb2pqr/psize.py' 2023-03-12T21:29:39,378 adding 'pdb2pqr/quatfit.py' 2023-03-12T21:29:39,380 adding 'pdb2pqr/residue.py' 2023-03-12T21:29:39,382 adding 'pdb2pqr/run.py' 2023-03-12T21:29:39,384 adding 'pdb2pqr/structures.py' 2023-03-12T21:29:39,386 adding 'pdb2pqr/topology.py' 2023-03-12T21:29:39,388 adding 'pdb2pqr/utilities.py' 2023-03-12T21:29:39,392 adding 'pdb2pqr/dat/AA.xml' 2023-03-12T21:29:39,400 adding 'pdb2pqr/dat/AMBER.DAT' 2023-03-12T21:29:39,402 adding 'pdb2pqr/dat/AMBER.names' 2023-03-12T21:29:39,410 adding 'pdb2pqr/dat/CHARMM.DAT' 2023-03-12T21:29:39,412 adding 'pdb2pqr/dat/CHARMM.names' 2023-03-12T21:29:39,413 adding 'pdb2pqr/dat/HYDROGENS.xml' 2023-03-12T21:29:39,416 adding 'pdb2pqr/dat/NA.xml' 2023-03-12T21:29:39,419 adding 'pdb2pqr/dat/PARSE.DAT' 2023-03-12T21:29:39,420 adding 'pdb2pqr/dat/PARSE.names' 2023-03-12T21:29:39,422 adding 'pdb2pqr/dat/PATCHES.xml' 2023-03-12T21:29:39,428 adding 'pdb2pqr/dat/PEOEPB.DAT' 2023-03-12T21:29:39,429 adding 'pdb2pqr/dat/PEOEPB.names' 2023-03-12T21:29:39,435 adding 'pdb2pqr/dat/SWANSON.DAT' 2023-03-12T21:29:39,436 adding 'pdb2pqr/dat/SWANSON.names' 2023-03-12T21:29:39,440 adding 'pdb2pqr/dat/TOPOLOGY.xml' 2023-03-12T21:29:39,450 adding 'pdb2pqr/dat/TYL06.DAT' 2023-03-12T21:29:39,452 adding 'pdb2pqr/dat/TYL06.names' 2023-03-12T21:29:39,456 adding 'pdb2pqr/hydrogens/__init__.py' 2023-03-12T21:29:39,459 adding 'pdb2pqr/hydrogens/optimize.py' 2023-03-12T21:29:39,465 adding 'pdb2pqr/hydrogens/structures.py' 2023-03-12T21:29:39,467 adding 'pdb2pqr/ligand/__init__.py' 2023-03-12T21:29:39,470 adding 'pdb2pqr/ligand/mol2.py' 2023-03-12T21:29:39,472 adding 'pdb2pqr/ligand/peoe.py' 2023-03-12T21:29:39,473 adding 'pdb2pqr/ligand/topology.py' 2023-03-12T21:29:39,476 adding 'pdb2pqr-3.6.1.dist-info/COPYING' 2023-03-12T21:29:39,477 adding 'pdb2pqr-3.6.1.dist-info/LICENSE.md' 2023-03-12T21:29:39,478 adding 'pdb2pqr-3.6.1.dist-info/METADATA' 2023-03-12T21:29:39,479 adding 'pdb2pqr-3.6.1.dist-info/WHEEL' 2023-03-12T21:29:39,480 adding 'pdb2pqr-3.6.1.dist-info/entry_points.txt' 2023-03-12T21:29:39,481 adding 'pdb2pqr-3.6.1.dist-info/top_level.txt' 2023-03-12T21:29:39,482 adding 'pdb2pqr-3.6.1.dist-info/RECORD' 2023-03-12T21:29:39,487 removing build/bdist.linux-armv7l/wheel 2023-03-12T21:29:39,585 Building wheel for pdb2pqr (pyproject.toml): finished with status 'done' 2023-03-12T21:29:39,598 Created wheel for pdb2pqr: filename=pdb2pqr-3.6.1-py2.py3-none-any.whl size=208163 sha256=0285ad40c44edb6791dacc4bd1603758e40f1979b2723153bfdf13d12ac9306d 2023-03-12T21:29:39,599 Stored in directory: /tmp/pip-ephem-wheel-cache-w6pq4zey/wheels/d1/ac/f0/3f4ed4db52d2dc6a3e6368ac6ef0a4850ebd643d56f2c30d68 2023-03-12T21:29:39,613 Successfully built pdb2pqr 2023-03-12T21:29:39,629 Removed build tracker: '/tmp/pip-build-tracker-o5zgif2k'