2023-03-14T00:14:00,163 Created temporary directory: /tmp/pip-ephem-wheel-cache-bjynxsah 2023-03-14T00:14:00,169 Created temporary directory: /tmp/pip-build-tracker-f_n07_nh 2023-03-14T00:14:00,170 Initialized build tracking at /tmp/pip-build-tracker-f_n07_nh 2023-03-14T00:14:00,170 Created build tracker: /tmp/pip-build-tracker-f_n07_nh 2023-03-14T00:14:00,170 Entered build tracker: /tmp/pip-build-tracker-f_n07_nh 2023-03-14T00:14:00,171 Created temporary directory: /tmp/pip-wheel-u81gqxms 2023-03-14T00:14:00,182 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-03-14T00:14:00,187 Created temporary directory: /tmp/pip-ephem-wheel-cache-mmtnigye 2023-03-14T00:14:00,240 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-03-14T00:14:00,247 2 location(s) to search for versions of gromacswrapper: 2023-03-14T00:14:00,247 * https://pypi.org/simple/gromacswrapper/ 2023-03-14T00:14:00,247 * https://www.piwheels.org/simple/gromacswrapper/ 2023-03-14T00:14:00,248 Fetching project page and analyzing links: https://pypi.org/simple/gromacswrapper/ 2023-03-14T00:14:00,249 Getting page https://pypi.org/simple/gromacswrapper/ 2023-03-14T00:14:00,253 Found index url https://pypi.org/simple 2023-03-14T00:14:00,495 Fetched page https://pypi.org/simple/gromacswrapper/ as application/vnd.pypi.simple.v1+json 2023-03-14T00:14:00,520 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/0f/f8/df1a8004045339699be417cf28d7e5665e6d7cf188d37302b1c84088ffae/GromacsWrapper-0.3.2-py2.7.egg (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,521 Found link https://files.pythonhosted.org/packages/1c/82/07f897423627742edc552e6510c3403d993dee6a16568b29bb57f560d74d/GromacsWrapper-0.3.2.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.3.2 2023-03-14T00:14:00,521 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d1/6a/45248df62150c461d026222b1c6a8feee1254f8f542d44571ad0297a39b0/GromacsWrapper-0.3.3-py2.7.egg (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,522 Found link https://files.pythonhosted.org/packages/bf/93/c94529f7748235ead26e081b7ba8e2ff3713b4816210962f5a6805f4d199/GromacsWrapper-0.3.3.macosx-10.6-x86_64.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.3.3.macosx-10.6-x86_64 2023-03-14T00:14:00,523 Found link https://files.pythonhosted.org/packages/35/66/4c302aeef43e954027703aef79cc1b7e93d79e989d9d99d66eafa1341891/GromacsWrapper-0.3.3.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.3.3 2023-03-14T00:14:00,524 Skipping link: No binaries permitted for gromacswrapper: https://files.pythonhosted.org/packages/ff/f9/6bf4e0a4dae41c6a69bb316e8a522618f569e37b6ea1ef262ca11e9772f7/GromacsWrapper-0.4.0-py2-none-any.whl (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,524 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/c5/6f9c0596508628078b490f4aecef8d25ec7977f8315e720a46ebe4a72688/GromacsWrapper-0.4.0-py2.7.egg (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,525 Found link https://files.pythonhosted.org/packages/cd/99/ca570bede19f3a49c858a8ae94e947ba00bee60df552e765f11db69b42f9/GromacsWrapper-0.4.0.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.4.0 2023-03-14T00:14:00,526 Skipping link: No binaries permitted for gromacswrapper: https://files.pythonhosted.org/packages/a5/67/dec2dd69d69700289f12592961266c1a8a90eac4c091a961360a6cd55dc0/GromacsWrapper-0.5.0-py2-none-any.whl (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,526 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/48/04/c47c3b7ab4d8834c297ee4deabb5ab638884539fd46f23a581ffcebc1878/GromacsWrapper-0.5.0-py2.7.egg (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,527 Found link https://files.pythonhosted.org/packages/e4/6b/054d15e27a4ebe00534fef7e4319df3aa417aeef4d9d57ece2adede99df2/GromacsWrapper-0.5.0.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.5.0 2023-03-14T00:14:00,528 Skipping link: No binaries permitted for gromacswrapper: https://files.pythonhosted.org/packages/fe/c4/36e63d84bb3c68db615f7665a884563c454b4856fb1180e0774989a3aec5/GromacsWrapper-0.5.1-py2-none-any.whl (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,528 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f5/5b/804e8964272f2363876c893563e61a0ed3b3b3f6db929f3a96f9f0388221/GromacsWrapper-0.5.1-py2.7.egg (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,529 Found link https://files.pythonhosted.org/packages/b1/77/53fe38a44ca21fc0109a19e5ffee3f85db9307ae60bc51f619ebf22de70e/GromacsWrapper-0.5.1.macosx-10.11-x86_64.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.5.1.macosx-10.11-x86_64 2023-03-14T00:14:00,530 Found link https://files.pythonhosted.org/packages/35/d6/42ddf83fc37b799713172dcf513db4bbd73ecf045f057452928be246bc3e/GromacsWrapper-0.5.1.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.5.1 2023-03-14T00:14:00,530 Skipping link: No binaries permitted for gromacswrapper: https://files.pythonhosted.org/packages/f0/42/df783ba6989d3c4e4053f2dcb6244f508bdf9fc83a114fb7b1cae10afaed/GromacsWrapper-0.6.0-py2-none-any.whl (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,531 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/14/8d/fbc4c84e69dbbb4679255649796f69cc02a6be14111cf8bdc9596bbb040b/GromacsWrapper-0.6.0-py2.7.egg (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,532 Found link https://files.pythonhosted.org/packages/2e/3c/ac70551ec83243b7904ab9eecb6c1c723f0cb3aebdcf9e202657400ee822/GromacsWrapper-0.6.0.macosx-10.11-x86_64.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.6.0.macosx-10.11-x86_64 2023-03-14T00:14:00,532 Found link https://files.pythonhosted.org/packages/1d/9e/a17ddbb7b5eb3883c23aeffb908db75f3a53c5f23f75dbe436623c30a995/GromacsWrapper-0.6.0.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.6.0 2023-03-14T00:14:00,533 Skipping link: No binaries permitted for gromacswrapper: https://files.pythonhosted.org/packages/7d/89/1626beff2767aa84154d92cd9827a0c9facb796cfe570299015839e9b297/GromacsWrapper-0.6.1-py2-none-any.whl (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,534 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e0/78/d33323f7af1cec6bbec69beb2ade16dbf0acb092e418fbbc136b8239fe05/GromacsWrapper-0.6.1-py2.7.egg (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,534 Found link https://files.pythonhosted.org/packages/c3/a5/80e4e3514100be0781e2e5065bcf19089b7df8d0909c635d5c73402575d0/GromacsWrapper-0.6.1.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.6.1 2023-03-14T00:14:00,535 Skipping link: No binaries permitted for gromacswrapper: https://files.pythonhosted.org/packages/54/d2/86d38c5c5340d3e919a7a1c1fab1a9ceb32fb289177455a606e692a0c99c/GromacsWrapper-0.6.2-py2-none-any.whl (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,535 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/22/98/a3eef95a73167ae53651d000c5c11b1460d1da857d87a8303a1b019606e1/GromacsWrapper-0.6.2-py2.7.egg (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,536 Found link https://files.pythonhosted.org/packages/3c/50/7956b36059ae8daeb6a38b503320c0cf79e66fbc917f1646e574daf7d5ab/GromacsWrapper-0.6.2.macosx-10.11-x86_64.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.6.2.macosx-10.11-x86_64 2023-03-14T00:14:00,537 Found link https://files.pythonhosted.org/packages/b4/6c/300d9aeac9ae5e6436850d6c9ac6fa542e664da389713946ec7dc6f8b53c/GromacsWrapper-0.6.2.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.6.2 2023-03-14T00:14:00,537 Skipping link: No binaries permitted for gromacswrapper: https://files.pythonhosted.org/packages/93/18/c51a38ca96686276b614e8251845e8c1921efe764efd98423ace710c7d7b/GromacsWrapper-0.7.0-py2.py3-none-any.whl (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,538 Found link https://files.pythonhosted.org/packages/d9/f2/2f573b4e2f1d674a375bb39f23088fc1b0b90d2cd9a927b1320617a0f7bc/GromacsWrapper-0.7.0.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.7.0 2023-03-14T00:14:00,539 Skipping link: No binaries permitted for gromacswrapper: https://files.pythonhosted.org/packages/7b/a1/3f2240ace2d5ecbdf9a251fabc2f274c761522a549795ba03327d40c7a65/GromacsWrapper-0.8.0-py2.py3-none-any.whl (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,539 Found link https://files.pythonhosted.org/packages/bf/40/9533380f268d0115da45ae2b140dda623e07764a12a9af44b25c4d32de01/GromacsWrapper-0.8.0.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.8.0 2023-03-14T00:14:00,540 Skipping link: No binaries permitted for gromacswrapper: https://files.pythonhosted.org/packages/e7/7b/e2a3990e329fa476b9142b156e5c8b8b9a4e57bb563b4ffc23d2de3a388c/GromacsWrapper-0.8.1-py2.py3-none-any.whl (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,540 Found link https://files.pythonhosted.org/packages/69/97/166e4728582382278991024dae08670c1791984f1fcd7e43c8cc0fce1b06/GromacsWrapper-0.8.1.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.8.1 2023-03-14T00:14:00,541 Skipping link: No binaries permitted for gromacswrapper: https://files.pythonhosted.org/packages/32/aa/88b2f02902b62b21610e094f54ef18d9014db6b0b72dc84f78d5af6265b1/GromacsWrapper-0.8.2-py2.py3-none-any.whl (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,542 Found link https://files.pythonhosted.org/packages/82/da/17cc4a3e750598b0dceb57202c5e69f5b5e06d9b9076c8a402e7e46b2183/GromacsWrapper-0.8.2.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.8.2 2023-03-14T00:14:00,542 Skipping link: No binaries permitted for gromacswrapper: https://files.pythonhosted.org/packages/07/8b/d299c81ca31a5bb50b7e9c3b606fbb2c5b63a41bdb0ff47af3c3d16858e1/GromacsWrapper-0.8.3-py2.py3-none-any.whl (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,543 Found link https://files.pythonhosted.org/packages/21/6a/8f955c014c2412c26774be56a531aa578623094b09dc9e5e4cdc9270d1ef/GromacsWrapper-0.8.3.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.8.3 2023-03-14T00:14:00,544 Skipping link: No binaries permitted for gromacswrapper: https://files.pythonhosted.org/packages/a4/b0/d7191a94d65a5856e41fbe8dbc4660b57f3c2a2aade41b16b66a74487e23/GromacsWrapper-0.8.4-py2.py3-none-any.whl (from https://pypi.org/simple/gromacswrapper/) 2023-03-14T00:14:00,544 Found link https://files.pythonhosted.org/packages/8d/ec/b3920a4b772baf44b93a9aed28adab3b0e52953752b4af88e7a0615d1b16/GromacsWrapper-0.8.4.tar.gz (from https://pypi.org/simple/gromacswrapper/), version: 0.8.4 2023-03-14T00:14:00,545 Fetching project page and analyzing links: https://www.piwheels.org/simple/gromacswrapper/ 2023-03-14T00:14:00,546 Getting page https://www.piwheels.org/simple/gromacswrapper/ 2023-03-14T00:14:00,548 Found index url https://www.piwheels.org/simple 2023-03-14T00:14:00,806 Fetched page https://www.piwheels.org/simple/gromacswrapper/ as text/html 2023-03-14T00:14:00,813 Skipping link: No binaries permitted for gromacswrapper: https://www.piwheels.org/simple/gromacswrapper/GromacsWrapper-0.8.3-py2.py3-none-any.whl#sha256=11ebc72027f949fd4c6c58d9f5e5ee705c2a26c4b55dd7159daacec2a12bad5d (from https://www.piwheels.org/simple/gromacswrapper/) 2023-03-14T00:14:00,814 Skipping link: No binaries permitted for gromacswrapper: https://www.piwheels.org/simple/gromacswrapper/GromacsWrapper-0.8.2-py2.py3-none-any.whl#sha256=445a92617b4f7a9119390845d7a31d648db1d981a45051fbd92713cca00fb218 (from https://www.piwheels.org/simple/gromacswrapper/) 2023-03-14T00:14:00,815 Skipping link: No binaries permitted for gromacswrapper: https://www.piwheels.org/simple/gromacswrapper/GromacsWrapper-0.8.1-py2.py3-none-any.whl#sha256=db1aae5344bc47c17e7ac5545b18bc9b1f5932239a30fb416ca3f6281ffba133 (from https://www.piwheels.org/simple/gromacswrapper/) 2023-03-14T00:14:00,815 Skipping link: No binaries permitted for gromacswrapper: https://www.piwheels.org/simple/gromacswrapper/GromacsWrapper-0.8.0-py2.py3-none-any.whl#sha256=a5fdbcf494f9cf32cd89262341601100f3ad24f979849ba6cf30b153d68a8762 (from https://www.piwheels.org/simple/gromacswrapper/) 2023-03-14T00:14:00,816 Skipping link: No binaries permitted for gromacswrapper: https://www.piwheels.org/simple/gromacswrapper/GromacsWrapper-0.7.0-py2.py3-none-any.whl#sha256=1c3913aa358b0a6b9327192c2d70fa76b3f8d3753ccc2475eccc4300c9e8c1fc (from https://www.piwheels.org/simple/gromacswrapper/) 2023-03-14T00:14:00,816 Skipping link: No binaries permitted for gromacswrapper: https://www.piwheels.org/simple/gromacswrapper/GromacsWrapper-0.6.2-py3-none-any.whl#sha256=e43b405c7f7c663d37c6ae68e08f49ad4d23f1f8cbc5975b3c02bc1e2a5e3d8a (from https://www.piwheels.org/simple/gromacswrapper/) 2023-03-14T00:14:00,817 Skipping link: No binaries permitted for gromacswrapper: https://www.piwheels.org/simple/gromacswrapper/GromacsWrapper-0.6.1-py3-none-any.whl#sha256=4a7a4d7bfd57a54a89765786ae4317fa8ac32e69a614d50780b6895a491c87de (from https://www.piwheels.org/simple/gromacswrapper/) 2023-03-14T00:14:00,817 Skipping link: No binaries permitted for gromacswrapper: https://www.piwheels.org/simple/gromacswrapper/GromacsWrapper-0.6.0-py3-none-any.whl#sha256=6a080436e3ea8ae130016d96a6865ee60220794b9bf670091839a4b6411ce8cb (from https://www.piwheels.org/simple/gromacswrapper/) 2023-03-14T00:14:00,818 Skipping link: not a file: https://www.piwheels.org/simple/gromacswrapper/ 2023-03-14T00:14:00,818 Skipping link: not a file: https://pypi.org/simple/gromacswrapper/ 2023-03-14T00:14:00,857 Given no hashes to check 1 links for project 'gromacswrapper': discarding no candidates 2023-03-14T00:14:00,888 Collecting gromacswrapper==0.8.4 2023-03-14T00:14:00,892 Created temporary directory: /tmp/pip-unpack-czikkl51 2023-03-14T00:14:01,311 Downloading GromacsWrapper-0.8.4.tar.gz (190 kB) 2023-03-14T00:14:01,762 Added gromacswrapper==0.8.4 from https://files.pythonhosted.org/packages/8d/ec/b3920a4b772baf44b93a9aed28adab3b0e52953752b4af88e7a0615d1b16/GromacsWrapper-0.8.4.tar.gz to build tracker '/tmp/pip-build-tracker-f_n07_nh' 2023-03-14T00:14:01,765 Running setup.py (path:/tmp/pip-wheel-u81gqxms/gromacswrapper_b9c99ae656dd46a8a776e9842a073c2b/setup.py) egg_info for package gromacswrapper 2023-03-14T00:14:01,766 Created temporary directory: /tmp/pip-pip-egg-info-dvcq2dio 2023-03-14T00:14:01,767 Preparing metadata (setup.py): started 2023-03-14T00:14:01,769 Running command python setup.py egg_info 2023-03-14T00:14:03,331 running egg_info 2023-03-14T00:14:03,333 creating /tmp/pip-pip-egg-info-dvcq2dio/GromacsWrapper.egg-info 2023-03-14T00:14:03,384 writing /tmp/pip-pip-egg-info-dvcq2dio/GromacsWrapper.egg-info/PKG-INFO 2023-03-14T00:14:03,390 writing dependency_links to /tmp/pip-pip-egg-info-dvcq2dio/GromacsWrapper.egg-info/dependency_links.txt 2023-03-14T00:14:03,395 writing requirements to /tmp/pip-pip-egg-info-dvcq2dio/GromacsWrapper.egg-info/requires.txt 2023-03-14T00:14:03,397 writing top-level names to /tmp/pip-pip-egg-info-dvcq2dio/GromacsWrapper.egg-info/top_level.txt 2023-03-14T00:14:03,399 writing manifest file '/tmp/pip-pip-egg-info-dvcq2dio/GromacsWrapper.egg-info/SOURCES.txt' 2023-03-14T00:14:03,583 reading manifest file '/tmp/pip-pip-egg-info-dvcq2dio/GromacsWrapper.egg-info/SOURCES.txt' 2023-03-14T00:14:03,587 reading manifest template 'MANIFEST.in' 2023-03-14T00:14:03,596 adding license file 'COPYING' 2023-03-14T00:14:03,596 adding license file 'AUTHORS' 2023-03-14T00:14:03,606 writing manifest file '/tmp/pip-pip-egg-info-dvcq2dio/GromacsWrapper.egg-info/SOURCES.txt' 2023-03-14T00:14:03,725 Preparing metadata (setup.py): finished with status 'done' 2023-03-14T00:14:03,739 Source in /tmp/pip-wheel-u81gqxms/gromacswrapper_b9c99ae656dd46a8a776e9842a073c2b has version 0.8.4, which satisfies requirement gromacswrapper==0.8.4 from https://files.pythonhosted.org/packages/8d/ec/b3920a4b772baf44b93a9aed28adab3b0e52953752b4af88e7a0615d1b16/GromacsWrapper-0.8.4.tar.gz 2023-03-14T00:14:03,741 Removed gromacswrapper==0.8.4 from https://files.pythonhosted.org/packages/8d/ec/b3920a4b772baf44b93a9aed28adab3b0e52953752b4af88e7a0615d1b16/GromacsWrapper-0.8.4.tar.gz from build tracker '/tmp/pip-build-tracker-f_n07_nh' 2023-03-14T00:14:03,754 Created temporary directory: /tmp/pip-unpack-si0u_d72 2023-03-14T00:14:03,756 Building wheels for collected packages: gromacswrapper 2023-03-14T00:14:03,765 Created temporary directory: /tmp/pip-wheel-cub1x6sf 2023-03-14T00:14:03,766 Building wheel for gromacswrapper (setup.py): started 2023-03-14T00:14:03,768 Destination directory: /tmp/pip-wheel-cub1x6sf 2023-03-14T00:14:03,768 Running command python setup.py bdist_wheel 2023-03-14T00:14:05,771 running bdist_wheel 2023-03-14T00:14:06,451 running build 2023-03-14T00:14:06,451 running build_py 2023-03-14T00:14:06,466 creating build 2023-03-14T00:14:06,467 creating build/lib 2023-03-14T00:14:06,468 creating build/lib/gromacs 2023-03-14T00:14:06,471 copying gromacs/exceptions.py -> build/lib/gromacs 2023-03-14T00:14:06,475 copying gromacs/run.py -> build/lib/gromacs 2023-03-14T00:14:06,480 copying gromacs/config.py -> build/lib/gromacs 2023-03-14T00:14:06,485 copying gromacs/_version.py -> build/lib/gromacs 2023-03-14T00:14:06,488 copying gromacs/qsub.py -> build/lib/gromacs 2023-03-14T00:14:06,493 copying gromacs/environment.py -> build/lib/gromacs 2023-03-14T00:14:06,498 copying gromacs/log.py -> build/lib/gromacs 2023-03-14T00:14:06,502 copying gromacs/utilities.py -> build/lib/gromacs 2023-03-14T00:14:06,507 copying gromacs/tools.py -> build/lib/gromacs 2023-03-14T00:14:06,512 copying gromacs/setup.py -> build/lib/gromacs 2023-03-14T00:14:06,519 copying gromacs/collections.py -> build/lib/gromacs 2023-03-14T00:14:06,523 copying gromacs/core.py -> build/lib/gromacs 2023-03-14T00:14:06,530 copying gromacs/scaling.py -> build/lib/gromacs 2023-03-14T00:14:06,535 copying gromacs/cbook.py -> build/lib/gromacs 2023-03-14T00:14:06,545 copying gromacs/formats.py -> build/lib/gromacs 2023-03-14T00:14:06,549 copying gromacs/__init__.py -> build/lib/gromacs 2023-03-14T00:14:06,556 creating build/lib/gromacs/fileformats 2023-03-14T00:14:06,559 copying gromacs/fileformats/xpm.py -> build/lib/gromacs/fileformats 2023-03-14T00:14:06,564 copying gromacs/fileformats/ndx.py -> build/lib/gromacs/fileformats 2023-03-14T00:14:06,570 copying gromacs/fileformats/convert.py -> build/lib/gromacs/fileformats 2023-03-14T00:14:06,575 copying gromacs/fileformats/top.py -> build/lib/gromacs/fileformats 2023-03-14T00:14:06,582 copying gromacs/fileformats/mdp.py -> build/lib/gromacs/fileformats 2023-03-14T00:14:06,587 copying gromacs/fileformats/blocks.py -> build/lib/gromacs/fileformats 2023-03-14T00:14:06,593 copying gromacs/fileformats/xvg.py -> build/lib/gromacs/fileformats 2023-03-14T00:14:06,600 copying gromacs/fileformats/__init__.py -> build/lib/gromacs/fileformats 2023-03-14T00:14:06,617 creating build/lib/gromacs/templates 2023-03-14T00:14:06,620 copying gromacs/templates/darwin.sh -> build/lib/gromacs/templates 2023-03-14T00:14:06,625 copying gromacs/templates/local.sh -> build/lib/gromacs/templates 2023-03-14T00:14:06,630 copying gromacs/templates/md_OPLSAA_gpu.mdp -> build/lib/gromacs/templates 2023-03-14T00:14:06,635 copying gromacs/templates/md_CHARMM27.mdp -> build/lib/gromacs/templates 2023-03-14T00:14:06,640 copying gromacs/templates/em.mdp -> build/lib/gromacs/templates 2023-03-14T00:14:06,645 copying gromacs/templates/md_CHARMM27_gpu.mdp -> build/lib/gromacs/templates 2023-03-14T00:14:06,651 copying gromacs/templates/md_G43a1.mdp -> build/lib/gromacs/templates 2023-03-14T00:14:06,655 copying gromacs/templates/md_OPLSAA.mdp -> build/lib/gromacs/templates 2023-03-14T00:14:06,660 copying gromacs/templates/gromacswrapper.cfg -> build/lib/gromacs/templates 2023-03-14T00:14:06,665 copying gromacs/templates/gromacswrapper_465.cfg -> build/lib/gromacs/templates 2023-03-14T00:14:06,674 UPDATING build/lib/gromacs/_version.py 2023-03-14T00:14:06,678 set build/lib/gromacs/_version.py to '0.8.4' 2023-03-14T00:14:06,679 running build_scripts 2023-03-14T00:14:06,680 creating build/scripts-3.7 2023-03-14T00:14:06,683 copying and adjusting scripts/gw-join_parts.py -> build/scripts-3.7 2023-03-14T00:14:06,687 copying and adjusting scripts/gw-merge_topologies.py -> build/scripts-3.7 2023-03-14T00:14:06,692 copying scripts/gw-forcefield.py -> build/scripts-3.7 2023-03-14T00:14:06,698 copying scripts/gw-partial_tempering.py -> build/scripts-3.7 2023-03-14T00:14:06,702 changing mode of build/scripts-3.7/gw-join_parts.py from 644 to 755 2023-03-14T00:14:06,703 changing mode of build/scripts-3.7/gw-merge_topologies.py from 644 to 755 2023-03-14T00:14:06,768 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-03-14T00:14:06,769 setuptools.SetuptoolsDeprecationWarning, 2023-03-14T00:14:06,830 installing to build/bdist.linux-armv7l/wheel 2023-03-14T00:14:06,831 running install 2023-03-14T00:14:06,892 running install_lib 2023-03-14T00:14:06,949 creating build/bdist.linux-armv7l 2023-03-14T00:14:06,950 creating build/bdist.linux-armv7l/wheel 2023-03-14T00:14:06,954 creating build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:06,956 copying build/lib/gromacs/exceptions.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:06,960 copying build/lib/gromacs/run.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:06,965 copying build/lib/gromacs/config.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:06,971 creating build/bdist.linux-armv7l/wheel/gromacs/templates 2023-03-14T00:14:06,973 copying build/lib/gromacs/templates/gromacswrapper.cfg -> build/bdist.linux-armv7l/wheel/gromacs/templates 2023-03-14T00:14:06,977 copying build/lib/gromacs/templates/md_OPLSAA_gpu.mdp -> build/bdist.linux-armv7l/wheel/gromacs/templates 2023-03-14T00:14:06,981 copying build/lib/gromacs/templates/gromacswrapper_465.cfg -> build/bdist.linux-armv7l/wheel/gromacs/templates 2023-03-14T00:14:06,985 copying build/lib/gromacs/templates/md_CHARMM27.mdp -> build/bdist.linux-armv7l/wheel/gromacs/templates 2023-03-14T00:14:06,988 copying build/lib/gromacs/templates/em.mdp -> build/bdist.linux-armv7l/wheel/gromacs/templates 2023-03-14T00:14:06,992 copying build/lib/gromacs/templates/md_CHARMM27_gpu.mdp -> build/bdist.linux-armv7l/wheel/gromacs/templates 2023-03-14T00:14:06,996 copying build/lib/gromacs/templates/darwin.sh -> build/bdist.linux-armv7l/wheel/gromacs/templates 2023-03-14T00:14:07,000 copying build/lib/gromacs/templates/md_G43a1.mdp -> build/bdist.linux-armv7l/wheel/gromacs/templates 2023-03-14T00:14:07,004 copying build/lib/gromacs/templates/md_OPLSAA.mdp -> build/bdist.linux-armv7l/wheel/gromacs/templates 2023-03-14T00:14:07,008 copying build/lib/gromacs/templates/local.sh -> build/bdist.linux-armv7l/wheel/gromacs/templates 2023-03-14T00:14:07,012 copying build/lib/gromacs/_version.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:07,015 copying build/lib/gromacs/qsub.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:07,020 copying build/lib/gromacs/environment.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:07,025 copying build/lib/gromacs/log.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:07,029 copying build/lib/gromacs/utilities.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:07,034 copying build/lib/gromacs/tools.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:07,039 copying build/lib/gromacs/setup.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:07,046 copying build/lib/gromacs/collections.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:07,050 copying build/lib/gromacs/core.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:07,056 copying build/lib/gromacs/scaling.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:07,060 copying build/lib/gromacs/cbook.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:07,069 copying build/lib/gromacs/formats.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:07,074 creating build/bdist.linux-armv7l/wheel/gromacs/fileformats 2023-03-14T00:14:07,076 copying build/lib/gromacs/fileformats/xpm.py -> build/bdist.linux-armv7l/wheel/gromacs/fileformats 2023-03-14T00:14:07,081 copying build/lib/gromacs/fileformats/ndx.py -> build/bdist.linux-armv7l/wheel/gromacs/fileformats 2023-03-14T00:14:07,085 copying build/lib/gromacs/fileformats/convert.py -> build/bdist.linux-armv7l/wheel/gromacs/fileformats 2023-03-14T00:14:07,089 copying build/lib/gromacs/fileformats/top.py -> build/bdist.linux-armv7l/wheel/gromacs/fileformats 2023-03-14T00:14:07,096 copying build/lib/gromacs/fileformats/mdp.py -> build/bdist.linux-armv7l/wheel/gromacs/fileformats 2023-03-14T00:14:07,100 copying build/lib/gromacs/fileformats/blocks.py -> build/bdist.linux-armv7l/wheel/gromacs/fileformats 2023-03-14T00:14:07,105 copying build/lib/gromacs/fileformats/xvg.py -> build/bdist.linux-armv7l/wheel/gromacs/fileformats 2023-03-14T00:14:07,111 copying build/lib/gromacs/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/gromacs/fileformats 2023-03-14T00:14:07,114 copying build/lib/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/gromacs 2023-03-14T00:14:07,118 running install_egg_info 2023-03-14T00:14:07,244 running egg_info 2023-03-14T00:14:07,295 writing GromacsWrapper.egg-info/PKG-INFO 2023-03-14T00:14:07,299 writing dependency_links to GromacsWrapper.egg-info/dependency_links.txt 2023-03-14T00:14:07,303 writing requirements to GromacsWrapper.egg-info/requires.txt 2023-03-14T00:14:07,305 writing top-level names to GromacsWrapper.egg-info/top_level.txt 2023-03-14T00:14:07,377 reading manifest file 'GromacsWrapper.egg-info/SOURCES.txt' 2023-03-14T00:14:07,388 reading manifest template 'MANIFEST.in' 2023-03-14T00:14:07,396 adding license file 'COPYING' 2023-03-14T00:14:07,397 adding license file 'AUTHORS' 2023-03-14T00:14:07,409 writing manifest file 'GromacsWrapper.egg-info/SOURCES.txt' 2023-03-14T00:14:07,412 Copying GromacsWrapper.egg-info to build/bdist.linux-armv7l/wheel/GromacsWrapper-0.8.4-py3.7.egg-info 2023-03-14T00:14:07,434 running install_scripts 2023-03-14T00:14:07,437 creating build/bdist.linux-armv7l/wheel/GromacsWrapper-0.8.4.data 2023-03-14T00:14:07,437 creating build/bdist.linux-armv7l/wheel/GromacsWrapper-0.8.4.data/scripts 2023-03-14T00:14:07,440 copying build/scripts-3.7/gw-partial_tempering.py -> build/bdist.linux-armv7l/wheel/GromacsWrapper-0.8.4.data/scripts 2023-03-14T00:14:07,443 copying build/scripts-3.7/gw-join_parts.py -> build/bdist.linux-armv7l/wheel/GromacsWrapper-0.8.4.data/scripts 2023-03-14T00:14:07,447 copying build/scripts-3.7/gw-forcefield.py -> build/bdist.linux-armv7l/wheel/GromacsWrapper-0.8.4.data/scripts 2023-03-14T00:14:07,451 copying build/scripts-3.7/gw-merge_topologies.py -> build/bdist.linux-armv7l/wheel/GromacsWrapper-0.8.4.data/scripts 2023-03-14T00:14:07,455 changing mode of build/bdist.linux-armv7l/wheel/GromacsWrapper-0.8.4.data/scripts/gw-partial_tempering.py to 755 2023-03-14T00:14:07,456 changing mode of build/bdist.linux-armv7l/wheel/GromacsWrapper-0.8.4.data/scripts/gw-join_parts.py to 755 2023-03-14T00:14:07,456 changing mode of build/bdist.linux-armv7l/wheel/GromacsWrapper-0.8.4.data/scripts/gw-forcefield.py to 755 2023-03-14T00:14:07,457 changing mode of build/bdist.linux-armv7l/wheel/GromacsWrapper-0.8.4.data/scripts/gw-merge_topologies.py to 755 2023-03-14T00:14:07,500 creating build/bdist.linux-armv7l/wheel/GromacsWrapper-0.8.4.dist-info/WHEEL 2023-03-14T00:14:07,505 creating '/tmp/pip-wheel-cub1x6sf/GromacsWrapper-0.8.4-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-03-14T00:14:07,511 adding 'GromacsWrapper-0.8.4.data/scripts/gw-forcefield.py' 2023-03-14T00:14:07,514 adding 'GromacsWrapper-0.8.4.data/scripts/gw-join_parts.py' 2023-03-14T00:14:07,518 adding 'GromacsWrapper-0.8.4.data/scripts/gw-merge_topologies.py' 2023-03-14T00:14:07,521 adding 'GromacsWrapper-0.8.4.data/scripts/gw-partial_tempering.py' 2023-03-14T00:14:07,530 adding 'gromacs/__init__.py' 2023-03-14T00:14:07,533 adding 'gromacs/_version.py' 2023-03-14T00:14:07,564 adding 'gromacs/cbook.py' 2023-03-14T00:14:07,569 adding 'gromacs/collections.py' 2023-03-14T00:14:07,578 adding 'gromacs/config.py' 2023-03-14T00:14:07,588 adding 'gromacs/core.py' 2023-03-14T00:14:07,592 adding 'gromacs/environment.py' 2023-03-14T00:14:07,595 adding 'gromacs/exceptions.py' 2023-03-14T00:14:07,598 adding 'gromacs/formats.py' 2023-03-14T00:14:07,601 adding 'gromacs/log.py' 2023-03-14T00:14:07,607 adding 'gromacs/qsub.py' 2023-03-14T00:14:07,613 adding 'gromacs/run.py' 2023-03-14T00:14:07,617 adding 'gromacs/scaling.py' 2023-03-14T00:14:07,632 adding 'gromacs/setup.py' 2023-03-14T00:14:07,639 adding 'gromacs/tools.py' 2023-03-14T00:14:07,648 adding 'gromacs/utilities.py' 2023-03-14T00:14:07,652 adding 'gromacs/fileformats/__init__.py' 2023-03-14T00:14:07,657 adding 'gromacs/fileformats/blocks.py' 2023-03-14T00:14:07,662 adding 'gromacs/fileformats/convert.py' 2023-03-14T00:14:07,665 adding 'gromacs/fileformats/mdp.py' 2023-03-14T00:14:07,669 adding 'gromacs/fileformats/ndx.py' 2023-03-14T00:14:07,681 adding 'gromacs/fileformats/top.py' 2023-03-14T00:14:07,686 adding 'gromacs/fileformats/xpm.py' 2023-03-14T00:14:07,702 adding 'gromacs/fileformats/xvg.py' 2023-03-14T00:14:07,706 adding 'gromacs/templates/darwin.sh' 2023-03-14T00:14:07,709 adding 'gromacs/templates/em.mdp' 2023-03-14T00:14:07,712 adding 'gromacs/templates/gromacswrapper.cfg' 2023-03-14T00:14:07,714 adding 'gromacs/templates/gromacswrapper_465.cfg' 2023-03-14T00:14:07,717 adding 'gromacs/templates/local.sh' 2023-03-14T00:14:07,720 adding 'gromacs/templates/md_CHARMM27.mdp' 2023-03-14T00:14:07,723 adding 'gromacs/templates/md_CHARMM27_gpu.mdp' 2023-03-14T00:14:07,726 adding 'gromacs/templates/md_G43a1.mdp' 2023-03-14T00:14:07,729 adding 'gromacs/templates/md_OPLSAA.mdp' 2023-03-14T00:14:07,732 adding 'gromacs/templates/md_OPLSAA_gpu.mdp' 2023-03-14T00:14:07,734 adding 'GromacsWrapper-0.8.4.dist-info/AUTHORS' 2023-03-14T00:14:07,748 adding 'GromacsWrapper-0.8.4.dist-info/COPYING' 2023-03-14T00:14:07,752 adding 'GromacsWrapper-0.8.4.dist-info/METADATA' 2023-03-14T00:14:07,754 adding 'GromacsWrapper-0.8.4.dist-info/WHEEL' 2023-03-14T00:14:07,756 adding 'GromacsWrapper-0.8.4.dist-info/top_level.txt' 2023-03-14T00:14:07,758 adding 'GromacsWrapper-0.8.4.dist-info/zip-safe' 2023-03-14T00:14:07,761 adding 'GromacsWrapper-0.8.4.dist-info/RECORD' 2023-03-14T00:14:07,771 removing build/bdist.linux-armv7l/wheel 2023-03-14T00:14:07,962 Building wheel for gromacswrapper (setup.py): finished with status 'done' 2023-03-14T00:14:07,974 Created wheel for gromacswrapper: filename=GromacsWrapper-0.8.4-py2.py3-none-any.whl size=177781 sha256=1f1bdd3a2e2371d847752595dc28219806927247b2b0c96e9faaa6f9528b3ddf 2023-03-14T00:14:07,976 Stored in directory: /tmp/pip-ephem-wheel-cache-mmtnigye/wheels/ab/68/22/27b2926ce943c1c54b5146077c7d92e173dfe3270d6989d1c9 2023-03-14T00:14:08,010 Successfully built gromacswrapper 2023-03-14T00:14:08,030 Removed build tracker: '/tmp/pip-build-tracker-f_n07_nh'