2023-03-14T00:39:06,373 Created temporary directory: /tmp/pip-ephem-wheel-cache-q73069a9 2023-03-14T00:39:06,375 Created temporary directory: /tmp/pip-build-tracker-v2uggya5 2023-03-14T00:39:06,376 Initialized build tracking at /tmp/pip-build-tracker-v2uggya5 2023-03-14T00:39:06,376 Created build tracker: /tmp/pip-build-tracker-v2uggya5 2023-03-14T00:39:06,376 Entered build tracker: /tmp/pip-build-tracker-v2uggya5 2023-03-14T00:39:06,377 Created temporary directory: /tmp/pip-wheel-va87usqb 2023-03-14T00:39:06,381 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-03-14T00:39:06,384 Created temporary directory: /tmp/pip-ephem-wheel-cache-1ejhe4rz 2023-03-14T00:39:06,413 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-03-14T00:39:06,416 2 location(s) to search for versions of gencodegenes: 2023-03-14T00:39:06,416 * https://pypi.org/simple/gencodegenes/ 2023-03-14T00:39:06,416 * https://www.piwheels.org/simple/gencodegenes/ 2023-03-14T00:39:06,417 Fetching project page and analyzing links: https://pypi.org/simple/gencodegenes/ 2023-03-14T00:39:06,417 Getting page https://pypi.org/simple/gencodegenes/ 2023-03-14T00:39:06,419 Found index url https://pypi.org/simple 2023-03-14T00:39:06,471 Fetched page https://pypi.org/simple/gencodegenes/ as application/vnd.pypi.simple.v1+json 2023-03-14T00:39:06,482 Found link https://files.pythonhosted.org/packages/0d/12/072d7deae2b505465a3fb3c418776e4aa35aded87ec5e3a2dc8a256cf7e9/gencodegenes-0.9.15.tar.gz (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8), version: 0.9.15 2023-03-14T00:39:06,482 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/c2/c1/1eafe0aa40210568d567312798c4f38fa24e53b195d5012a481f557461bc/gencodegenes-1.0.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,483 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/7b/6b/697207f48972e939877e77546f07d0e805e4b71cf8231dbdc1133d4935e3/gencodegenes-1.0.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,483 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/a0/b4/c325425663a972a8b1e077a22eac6263ce6c1ee274e43716712e2d45c6aa/gencodegenes-1.0.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,483 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/7e/89/013d9d409beeb63031684a3438bfb7b3d0e484008e442a249456079ca2b3/gencodegenes-1.0.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,483 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/7c/3e/f75536f9af6d7e43ecd45d117b0dabdab0b3153f85a62e3ab2760005b38b/gencodegenes-1.0.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,484 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/75/13/474f8da42875f6e6ce7e3a42ccb3b33545ecbc1cf35ab6615ea9288c1609/gencodegenes-1.0.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,484 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/d7/5b/ae61ce133207b3a0eb1abc02b87c396eaa82acb645869aef05c00485fa95/gencodegenes-1.0.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,484 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/ad/1a/72bd7a3b3631920d0f1285b5f35ece5929e105cd1a9618286585efdaf634/gencodegenes-1.0.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,484 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/ef/cd/4caba0573155f328eec57c1f9292f6c304cdc73f25f9748bec7b5ac5e6f1/gencodegenes-1.0.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,484 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/b5/9e/6a869d5feaae0ad866993a0fa72a994d9b5003aa75baff4ae32b6f964960/gencodegenes-1.0.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,485 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/d5/e6/e0b9d67a234ec753559ac8fb699edea2f0409fe7d0d1c9d9670f9b72a941/gencodegenes-1.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,485 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/1b/48/bdad56e24c1d9b5579d92538bb062426a50630f21cfe952a0fd943e4b176/gencodegenes-1.0.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,485 Found link https://files.pythonhosted.org/packages/9a/7c/7429bf09284e7894cc06bde4f8d85b2fa0e11890f4f0952e0b0ee48621ec/gencodegenes-1.0.0.tar.gz (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8), version: 1.0.0 2023-03-14T00:39:06,486 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/91/2c/e3b52307f7232511b7ee3d4ebb1bdcc2de775967d1344282212ac374f68d/gencodegenes-1.0.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,486 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/96/30/f653067a5b4e2fd097c261f3610f513493cdef4b96d0e2748280a9cc7150/gencodegenes-1.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,486 Skipping link: No binaries permitted for gencodegenes: 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https://files.pythonhosted.org/packages/da/0d/c0a9b630323b264b09c814d93baf02836fa83ba84f337a064f9648dfa135/gencodegenes-1.0.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,487 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/52/02/1b7215ae24decb6c99bf5a9bae4f466dfaf527667b3428bf71a9fdfb9f02/gencodegenes-1.0.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,487 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/7f/e5/f976692c94179e8157d62d06f3dac895a4865a15ef13e3d8feadc5d81f4c/gencodegenes-1.0.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,487 Skipping link: No binaries permitted for gencodegenes: 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https://files.pythonhosted.org/packages/58/c5/29b2e4fe4af9059fcdc8f4aa5ecfc4d29fa915c08b9a655214ffb258828d/gencodegenes-1.0.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,488 Found link https://files.pythonhosted.org/packages/ef/80/34bc48d62656740b60a3e6e0144d439b85ec909778dd2921b096b5e7b7fa/gencodegenes-1.0.1.tar.gz (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8), version: 1.0.1 2023-03-14T00:39:06,489 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/23/09/61815a38328403063615b7743109a5d15ee7bd726940d75c556d3af56f06/gencodegenes-1.0.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,489 Skipping link: No binaries permitted for gencodegenes: 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https://files.pythonhosted.org/packages/5b/3d/a6d0b37927e564272faf640dfbbe67e4143ddfecdcf06d2eebbff06a8079/gencodegenes-1.0.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,494 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/5a/5d/ed1541aadf1f16850a083ea2a3629a8b2f000ed88b47d7505bf4f6f7256f/gencodegenes-1.0.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,494 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/5b/a9/61a5f4be9170f61a6cc7b92bcea144efc88830c730307cd5a5b4c27749bd/gencodegenes-1.0.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,494 Found link https://files.pythonhosted.org/packages/ff/ac/672e2122b1814dccc97ee7b02cecec58c9dec4d4f38230a2d90e8aa98600/gencodegenes-1.0.4.tar.gz (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8), version: 1.0.4 2023-03-14T00:39:06,495 Fetching project page and analyzing links: https://www.piwheels.org/simple/gencodegenes/ 2023-03-14T00:39:06,495 Getting page https://www.piwheels.org/simple/gencodegenes/ 2023-03-14T00:39:06,496 Found index url https://www.piwheels.org/simple 2023-03-14T00:39:06,651 Fetched page https://www.piwheels.org/simple/gencodegenes/ as text/html 2023-03-14T00:39:06,653 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=7d4f6d406625530020a94fe09af3ab9bdc5ea1d7585f3068158152e756b1bfb1 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,653 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=7d4f6d406625530020a94fe09af3ab9bdc5ea1d7585f3068158152e756b1bfb1 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-03-14T00:39:06,654 Skipping link: not a file: https://www.piwheels.org/simple/gencodegenes/ 2023-03-14T00:39:06,654 Skipping link: not a file: https://pypi.org/simple/gencodegenes/ 2023-03-14T00:39:06,681 Given no hashes to check 1 links for project 'gencodegenes': discarding no candidates 2023-03-14T00:39:06,709 Collecting gencodegenes==1.0.4 2023-03-14T00:39:06,712 Created temporary directory: /tmp/pip-unpack-duv7xo21 2023-03-14T00:39:06,925 Downloading gencodegenes-1.0.4.tar.gz (217 kB) 2023-03-14T00:39:07,115 Added gencodegenes==1.0.4 from https://files.pythonhosted.org/packages/ff/ac/672e2122b1814dccc97ee7b02cecec58c9dec4d4f38230a2d90e8aa98600/gencodegenes-1.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-v2uggya5' 2023-03-14T00:39:07,119 Created temporary directory: /tmp/pip-build-env-tmmmu6qu 2023-03-14T00:39:07,130 Installing build dependencies: started 2023-03-14T00:39:07,131 Running command pip subprocess to install build dependencies 2023-03-14T00:39:08,352 Using pip 23.0.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-03-14T00:39:08,932 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-03-14T00:39:08,959 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-03-14T00:39:10,536 Collecting cython 2023-03-14T00:39:11,070 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.33-cp39-cp39-linux_armv7l.whl (5.0 MB) 2023-03-14T00:39:12,700 Collecting setuptools>=40.6.0 2023-03-14T00:39:12,853 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.6.0-py3-none-any.whl (1.1 MB) 2023-03-14T00:39:13,130 Collecting wheel 2023-03-14T00:39:13,147 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2023-03-14T00:39:14,936 Installing collected packages: wheel, setuptools, cython 2023-03-14T00:39:15,092 Creating /tmp/pip-build-env-tmmmu6qu/overlay/bin 2023-03-14T00:39:15,094 changing mode of /tmp/pip-build-env-tmmmu6qu/overlay/bin/wheel to 755 2023-03-14T00:39:20,222 changing mode of /tmp/pip-build-env-tmmmu6qu/overlay/bin/cygdb to 755 2023-03-14T00:39:20,225 changing mode of /tmp/pip-build-env-tmmmu6qu/overlay/bin/cython to 755 2023-03-14T00:39:20,227 changing mode of /tmp/pip-build-env-tmmmu6qu/overlay/bin/cythonize to 755 2023-03-14T00:39:20,252 Successfully installed cython-0.29.33 setuptools-67.6.0 wheel-0.38.4 2023-03-14T00:39:20,793 Installing build dependencies: finished with status 'done' 2023-03-14T00:39:20,805 Getting requirements to build wheel: started 2023-03-14T00:39:20,806 Running command Getting requirements to build wheel 2023-03-14T00:39:24,566 Compiling src/gencodegenes/transcript.pyx because it depends on /tmp/pip-build-env-tmmmu6qu/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd. 2023-03-14T00:39:24,567 Compiling src/gencodegenes/gencode.pyx because it depends on /tmp/pip-build-env-tmmmu6qu/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd. 2023-03-14T00:39:24,567 [1/2] Cythonizing src/gencodegenes/gencode.pyx 2023-03-14T00:39:24,568 [2/2] Cythonizing src/gencodegenes/transcript.pyx 2023-03-14T00:39:24,647 running egg_info 2023-03-14T00:39:24,652 writing src/gencodegenes.egg-info/PKG-INFO 2023-03-14T00:39:24,654 writing dependency_links to src/gencodegenes.egg-info/dependency_links.txt 2023-03-14T00:39:24,657 writing requirements to src/gencodegenes.egg-info/requires.txt 2023-03-14T00:39:24,659 writing top-level names to src/gencodegenes.egg-info/top_level.txt 2023-03-14T00:39:24,687 reading manifest file 'src/gencodegenes.egg-info/SOURCES.txt' 2023-03-14T00:39:24,689 reading manifest template 'MANIFEST.in' 2023-03-14T00:39:24,693 warning: no files found matching 'src/gencodegenes/data/rates.txt' 2023-03-14T00:39:24,696 warning: no files found matching 'data/*.txt' 2023-03-14T00:39:24,696 adding license file 'LICENSE.txt' 2023-03-14T00:39:24,700 writing manifest file 'src/gencodegenes.egg-info/SOURCES.txt' 2023-03-14T00:39:24,934 Getting requirements to build wheel: finished with status 'done' 2023-03-14T00:39:24,944 Created temporary directory: /tmp/pip-modern-metadata-vez8ib55 2023-03-14T00:39:24,946 Preparing metadata (pyproject.toml): started 2023-03-14T00:39:24,947 Running command Preparing metadata (pyproject.toml) 2023-03-14T00:39:26,187 running dist_info 2023-03-14T00:39:26,212 creating /tmp/pip-modern-metadata-vez8ib55/gencodegenes.egg-info 2023-03-14T00:39:26,218 writing /tmp/pip-modern-metadata-vez8ib55/gencodegenes.egg-info/PKG-INFO 2023-03-14T00:39:26,220 writing dependency_links to /tmp/pip-modern-metadata-vez8ib55/gencodegenes.egg-info/dependency_links.txt 2023-03-14T00:39:26,223 writing requirements to /tmp/pip-modern-metadata-vez8ib55/gencodegenes.egg-info/requires.txt 2023-03-14T00:39:26,224 writing top-level names to /tmp/pip-modern-metadata-vez8ib55/gencodegenes.egg-info/top_level.txt 2023-03-14T00:39:26,225 writing manifest file '/tmp/pip-modern-metadata-vez8ib55/gencodegenes.egg-info/SOURCES.txt' 2023-03-14T00:39:26,250 reading manifest file '/tmp/pip-modern-metadata-vez8ib55/gencodegenes.egg-info/SOURCES.txt' 2023-03-14T00:39:26,253 reading manifest template 'MANIFEST.in' 2023-03-14T00:39:26,257 warning: no files found matching 'src/gencodegenes/data/rates.txt' 2023-03-14T00:39:26,259 warning: no files found matching 'data/*.txt' 2023-03-14T00:39:26,259 adding license file 'LICENSE.txt' 2023-03-14T00:39:26,262 writing manifest file '/tmp/pip-modern-metadata-vez8ib55/gencodegenes.egg-info/SOURCES.txt' 2023-03-14T00:39:26,263 creating '/tmp/pip-modern-metadata-vez8ib55/gencodegenes-1.0.4.dist-info' 2023-03-14T00:39:26,559 Preparing metadata (pyproject.toml): finished with status 'done' 2023-03-14T00:39:26,566 Source in /tmp/pip-wheel-va87usqb/gencodegenes_afd280bed68947379347047b2a77a51a has version 1.0.4, which satisfies requirement gencodegenes==1.0.4 from https://files.pythonhosted.org/packages/ff/ac/672e2122b1814dccc97ee7b02cecec58c9dec4d4f38230a2d90e8aa98600/gencodegenes-1.0.4.tar.gz 2023-03-14T00:39:26,567 Removed gencodegenes==1.0.4 from https://files.pythonhosted.org/packages/ff/ac/672e2122b1814dccc97ee7b02cecec58c9dec4d4f38230a2d90e8aa98600/gencodegenes-1.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-v2uggya5' 2023-03-14T00:39:26,573 Created temporary directory: /tmp/pip-unpack-d3jz9u17 2023-03-14T00:39:26,573 Building wheels for collected packages: gencodegenes 2023-03-14T00:39:26,578 Created temporary directory: /tmp/pip-wheel-ceyvahbk 2023-03-14T00:39:26,579 Destination directory: /tmp/pip-wheel-ceyvahbk 2023-03-14T00:39:26,582 Building wheel for gencodegenes (pyproject.toml): started 2023-03-14T00:39:26,583 Running command Building wheel for gencodegenes (pyproject.toml) 2023-03-14T00:39:27,920 running bdist_wheel 2023-03-14T00:39:27,941 running build 2023-03-14T00:39:27,942 running build_py 2023-03-14T00:39:27,953 creating build 2023-03-14T00:39:27,953 creating build/lib.linux-armv7l-cpython-39 2023-03-14T00:39:27,954 creating build/lib.linux-armv7l-cpython-39/gencodegenes 2023-03-14T00:39:27,955 copying src/gencodegenes/__init__.py -> build/lib.linux-armv7l-cpython-39/gencodegenes 2023-03-14T00:39:27,957 running egg_info 2023-03-14T00:39:27,978 writing src/gencodegenes.egg-info/PKG-INFO 2023-03-14T00:39:27,980 writing dependency_links to src/gencodegenes.egg-info/dependency_links.txt 2023-03-14T00:39:27,981 writing requirements to src/gencodegenes.egg-info/requires.txt 2023-03-14T00:39:27,982 writing top-level names to src/gencodegenes.egg-info/top_level.txt 2023-03-14T00:39:27,991 reading manifest file 'src/gencodegenes.egg-info/SOURCES.txt' 2023-03-14T00:39:27,993 reading manifest template 'MANIFEST.in' 2023-03-14T00:39:27,997 warning: no files found matching 'src/gencodegenes/data/rates.txt' 2023-03-14T00:39:27,999 warning: no files found matching 'data/*.txt' 2023-03-14T00:39:28,000 adding license file 'LICENSE.txt' 2023-03-14T00:39:28,003 writing manifest file 'src/gencodegenes.egg-info/SOURCES.txt' 2023-03-14T00:39:28,006 copying src/gencodegenes/gencode.cpp -> build/lib.linux-armv7l-cpython-39/gencodegenes 2023-03-14T00:39:28,026 copying src/gencodegenes/gencode.pyx -> build/lib.linux-armv7l-cpython-39/gencodegenes 2023-03-14T00:39:28,029 copying src/gencodegenes/transcript.cpp -> build/lib.linux-armv7l-cpython-39/gencodegenes 2023-03-14T00:39:28,048 copying src/gencodegenes/transcript.pxd -> build/lib.linux-armv7l-cpython-39/gencodegenes 2023-03-14T00:39:28,050 copying src/gencodegenes/transcript.pyx -> build/lib.linux-armv7l-cpython-39/gencodegenes 2023-03-14T00:39:28,053 running build_ext 2023-03-14T00:39:28,059 building 'gencodegenes.transcript' extension 2023-03-14T00:39:28,059 creating build/temp.linux-armv7l-cpython-39 2023-03-14T00:39:28,060 creating build/temp.linux-armv7l-cpython-39/src 2023-03-14T00:39:28,061 creating build/temp.linux-armv7l-cpython-39/src/gencodegenes 2023-03-14T00:39:28,062 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/gencodegenes/transcript.cpp -o build/temp.linux-armv7l-cpython-39/src/gencodegenes/transcript.o -std=c++11 -I/usr/include 2023-03-14T00:39:47,913 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-cpython-39/src/tx.o -std=c++11 -I/usr/include 2023-03-14T00:39:55,297 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/gencodegenes/transcript.o build/temp.linux-armv7l-cpython-39/src/tx.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/gencodegenes/transcript.cpython-39-arm-linux-gnueabihf.so 2023-03-14T00:39:55,721 building 'gencodegenes.gencode' extension 2023-03-14T00:39:55,722 creating build/temp.linux-armv7l-cpython-39/src/gzstream 2023-03-14T00:39:55,723 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -Isrc/zlib -I/usr/include/python3.9 -c src/gencode.cpp -o build/temp.linux-armv7l-cpython-39/src/gencode.o -std=c++11 -I/usr/include 2023-03-14T00:40:08,474 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -Isrc/zlib -I/usr/include/python3.9 -c src/gencodegenes/gencode.cpp -o build/temp.linux-armv7l-cpython-39/src/gencodegenes/gencode.o -std=c++11 -I/usr/include 2023-03-14T00:40:35,619 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -Isrc/zlib -I/usr/include/python3.9 -c src/gtf.cpp -o build/temp.linux-armv7l-cpython-39/src/gtf.o -std=c++11 -I/usr/include 2023-03-14T00:40:38,019 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -Isrc/zlib -I/usr/include/python3.9 -c src/gzstream/gzstream.C -o build/temp.linux-armv7l-cpython-39/src/gzstream/gzstream.o -std=c++11 -I/usr/include 2023-03-14T00:40:39,360 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -Isrc/zlib -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-cpython-39/src/tx.o -std=c++11 -I/usr/include 2023-03-14T00:40:46,749 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/gencode.o build/temp.linux-armv7l-cpython-39/src/gencodegenes/gencode.o build/temp.linux-armv7l-cpython-39/src/gtf.o build/temp.linux-armv7l-cpython-39/src/gzstream/gzstream.o build/temp.linux-armv7l-cpython-39/src/tx.o -L/usr/lib -lz -o build/lib.linux-armv7l-cpython-39/gencodegenes/gencode.cpython-39-arm-linux-gnueabihf.so 2023-03-14T00:40:47,367 installing to build/bdist.linux-armv7l/wheel 2023-03-14T00:40:47,367 running install 2023-03-14T00:40:47,393 running install_lib 2023-03-14T00:40:47,401 creating build/bdist.linux-armv7l 2023-03-14T00:40:47,402 creating build/bdist.linux-armv7l/wheel 2023-03-14T00:40:47,404 creating build/bdist.linux-armv7l/wheel/gencodegenes 2023-03-14T00:40:47,405 copying build/lib.linux-armv7l-cpython-39/gencodegenes/gencode.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-03-14T00:40:47,503 copying build/lib.linux-armv7l-cpython-39/gencodegenes/transcript.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-03-14T00:40:47,552 copying build/lib.linux-armv7l-cpython-39/gencodegenes/transcript.pyx -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-03-14T00:40:47,555 copying build/lib.linux-armv7l-cpython-39/gencodegenes/__init__.py -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-03-14T00:40:47,557 copying build/lib.linux-armv7l-cpython-39/gencodegenes/gencode.cpp -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-03-14T00:40:47,575 copying build/lib.linux-armv7l-cpython-39/gencodegenes/transcript.cpp -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-03-14T00:40:47,592 copying build/lib.linux-armv7l-cpython-39/gencodegenes/gencode.pyx -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-03-14T00:40:47,594 copying build/lib.linux-armv7l-cpython-39/gencodegenes/transcript.pxd -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-03-14T00:40:47,596 running install_egg_info 2023-03-14T00:40:47,609 Copying src/gencodegenes.egg-info to build/bdist.linux-armv7l/wheel/gencodegenes-1.0.4-py3.9.egg-info 2023-03-14T00:40:47,620 running install_scripts 2023-03-14T00:40:47,667 creating build/bdist.linux-armv7l/wheel/gencodegenes-1.0.4.dist-info/WHEEL 2023-03-14T00:40:47,671 creating '/tmp/pip-wheel-ceyvahbk/.tmp-zqt40mmf/gencodegenes-1.0.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-03-14T00:40:47,673 adding 'gencodegenes/__init__.py' 2023-03-14T00:40:47,734 adding 'gencodegenes/gencode.cpp' 2023-03-14T00:40:48,580 adding 'gencodegenes/gencode.cpython-39-arm-linux-gnueabihf.so' 2023-03-14T00:40:48,615 adding 'gencodegenes/gencode.pyx' 2023-03-14T00:40:48,669 adding 'gencodegenes/transcript.cpp' 2023-03-14T00:40:49,113 adding 'gencodegenes/transcript.cpython-39-arm-linux-gnueabihf.so' 2023-03-14T00:40:49,130 adding 'gencodegenes/transcript.pxd' 2023-03-14T00:40:49,132 adding 'gencodegenes/transcript.pyx' 2023-03-14T00:40:49,135 adding 'gencodegenes-1.0.4.dist-info/LICENSE.txt' 2023-03-14T00:40:49,136 adding 'gencodegenes-1.0.4.dist-info/METADATA' 2023-03-14T00:40:49,137 adding 'gencodegenes-1.0.4.dist-info/WHEEL' 2023-03-14T00:40:49,138 adding 'gencodegenes-1.0.4.dist-info/top_level.txt' 2023-03-14T00:40:49,139 adding 'gencodegenes-1.0.4.dist-info/RECORD' 2023-03-14T00:40:49,175 removing build/bdist.linux-armv7l/wheel 2023-03-14T00:40:49,322 Building wheel for gencodegenes (pyproject.toml): finished with status 'done' 2023-03-14T00:40:49,377 Created wheel for gencodegenes: filename=gencodegenes-1.0.4-cp39-cp39-linux_armv7l.whl size=2616102 sha256=e6e8caec16e08255d98aedf6166847fea938122626d4e8ba1e8d0be29391624d 2023-03-14T00:40:49,378 Stored in directory: /tmp/pip-ephem-wheel-cache-1ejhe4rz/wheels/5d/27/78/c9279d0867b7e012793403ed7dc1fad6c80bb67243dac85bb0 2023-03-14T00:40:49,392 Successfully built gencodegenes 2023-03-14T00:40:49,469 Removed build tracker: '/tmp/pip-build-tracker-v2uggya5'