2023-03-16T04:27:39,662 Created temporary directory: /tmp/pip-ephem-wheel-cache-11oak7ot
2023-03-16T04:27:39,667 Created temporary directory: /tmp/pip-build-tracker-424uunun
2023-03-16T04:27:39,668 Initialized build tracking at /tmp/pip-build-tracker-424uunun
2023-03-16T04:27:39,668 Created build tracker: /tmp/pip-build-tracker-424uunun
2023-03-16T04:27:39,669 Entered build tracker: /tmp/pip-build-tracker-424uunun
2023-03-16T04:27:39,670 Created temporary directory: /tmp/pip-wheel-cttts9xt
2023-03-16T04:27:39,680 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-16T04:27:39,686 Created temporary directory: /tmp/pip-ephem-wheel-cache-_dm5rcyn
2023-03-16T04:27:39,747 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-16T04:27:39,753 2 location(s) to search for versions of gtdbtk:
2023-03-16T04:27:39,753 * https://pypi.org/simple/gtdbtk/
2023-03-16T04:27:39,753 * https://www.piwheels.org/simple/gtdbtk/
2023-03-16T04:27:39,754 Fetching project page and analyzing links: https://pypi.org/simple/gtdbtk/
2023-03-16T04:27:39,756 Getting page https://pypi.org/simple/gtdbtk/
2023-03-16T04:27:39,759 Found index url https://pypi.org/simple
2023-03-16T04:27:39,956 Fetched page https://pypi.org/simple/gtdbtk/ as application/vnd.pypi.simple.v1+json
2023-03-16T04:27:39,990   Found link https://files.pythonhosted.org/packages/77/1d/a47e727062761ea6108b1be340d24c711131df11415d82cdb30bcb51738b/gtdbtk-0.0.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.1
2023-03-16T04:27:39,991   Found link https://files.pythonhosted.org/packages/78/fc/021b3e4fc9fc1a8d8596ccf703ee4f5abd97b496bc714a9bfc69332e913e/gtdbtk-0.0.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.2
2023-03-16T04:27:39,992   Found link https://files.pythonhosted.org/packages/b8/55/a62d05d6a2d35a6e9f2247586a77f8033eaeeffb8e8d4db6511252c8a59b/gtdbtk-0.0.3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.3
2023-03-16T04:27:39,992   Found link https://files.pythonhosted.org/packages/88/3d/2dedbfdce682d2c73aebb1182835889222aecefac4072e205e885b601be5/gtdbtk-0.0.4b0.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b0
2023-03-16T04:27:39,993   Found link https://files.pythonhosted.org/packages/e7/21/7b30d68267c9ed81610a37c8fdac4b53f7090f9511d963a54754ec49d521/gtdbtk-0.0.4b1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b1
2023-03-16T04:27:39,994   Found link https://files.pythonhosted.org/packages/d1/f0/970559d46438a2004ccaa4199491188afc1bb13304fb899b26a3530ed841/gtdbtk-0.0.4b2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b2
2023-03-16T04:27:39,995   Found link https://files.pythonhosted.org/packages/e0/47/a9610df19e2bcf2782fc1ee29e5f85452b20a22d6f80581a23e3c0111c52/gtdbtk-0.0.4b3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b3
2023-03-16T04:27:39,995   Found link https://files.pythonhosted.org/packages/bf/f1/ebd7ba5d9ac68fc00ec0f7a69b52111d945a70f836dd4ba975600b088a98/gtdbtk-0.0.5.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.5
2023-03-16T04:27:39,996   Found link https://files.pythonhosted.org/packages/ca/7c/fc51570da6722bd31e310bb1ac218cb9d839dfae5d5e94d0ea3666402812/gtdbtk-0.0.6.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.6
2023-03-16T04:27:39,997   Found link https://files.pythonhosted.org/packages/68/72/fdfc81336d6a94e8f286f562bc265e5d215f653f5d08d91689b6cb69a6cb/gtdbtk-0.0.7.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.7
2023-03-16T04:27:39,997   Found link https://files.pythonhosted.org/packages/00/bb/2c2c4a00d4ca637be0daa7ac6bca99011afa8c42de7148c4e5dd6fc28141/gtdbtk-0.0.8b1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.8b1
2023-03-16T04:27:39,998   Found link https://files.pythonhosted.org/packages/c0/3e/4a7f207340198fb69fe0764236f9cfb562840796cca457317024f1bcfb65/gtdbtk-0.1.0.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.0
2023-03-16T04:27:39,999   Found link https://files.pythonhosted.org/packages/5f/c1/f028b36863e2b27d0a4191f4033eec25cfff898abceb97b0ccfa1352e1f0/gtdbtk-0.1.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.1
2023-03-16T04:27:39,999   Found link https://files.pythonhosted.org/packages/1f/40/6a7cae5b58902ff5add1db17bf0dd24857bfedacd73f47096e3ef5789899/gtdbtk-0.1.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.2
2023-03-16T04:27:40,000   Found link https://files.pythonhosted.org/packages/e4/e7/481464381afdf57da5e920a1713a73627373583c57d292ad7155e8b4f32c/gtdbtk-0.1.3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.3
2023-03-16T04:27:40,001   Found link https://files.pythonhosted.org/packages/29/6d/e9dc39898e8cc79fe54b5109ca7ed03842bcab51368cc6dbf05c2b2c6f39/gtdbtk-0.1.6.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.6
2023-03-16T04:27:40,002   Found link https://files.pythonhosted.org/packages/db/c8/b052434152065efc0d209401041a7f7ba51c153832f4fe0a424fe0990cfa/gtdbtk-0.2.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.2.1
2023-03-16T04:27:40,002   Found link https://files.pythonhosted.org/packages/0a/74/8cbe8afea3aa0f7d6b948210b8937f3edcf541b3212cae2ce6aa560276a9/gtdbtk-0.2.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.2.2
2023-03-16T04:27:40,003   Found link https://files.pythonhosted.org/packages/45/de/019db6634299b4086a49646891c9e99347e2908713baa14641e15687e4af/gtdbtk-0.3.0.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.0
2023-03-16T04:27:40,004   Found link https://files.pythonhosted.org/packages/6e/46/14181ed7f443fd8f70353250d09c94d2a2d867e68cc687167a8546ef4926/gtdbtk-0.3.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.1
2023-03-16T04:27:40,004   Found link https://files.pythonhosted.org/packages/91/64/06be7ada30b1895a1205feac310a92929a5e135b5821036632aa36d1354c/gtdbtk-0.3.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.2
2023-03-16T04:27:40,005   Found link https://files.pythonhosted.org/packages/7d/90/a62620e2c5c5799d0271f097a83c356dd7d458bf85651da24a353e93d669/gtdbtk-0.3.3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.3
2023-03-16T04:27:40,006   Found link https://files.pythonhosted.org/packages/48/b3/ce025d246df8196fbb18ac4ef9b3f09b430d8a71627b3b49dd7f33647b95/gtdbtk-1.0.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.0.0
2023-03-16T04:27:40,008   Found link https://files.pythonhosted.org/packages/87/bc/dcfb65d65adda7952adf9251cb7e86c2cc3143804932d2a6cbdc04f4249e/gtdbtk-1.0.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.0.1
2023-03-16T04:27:40,009   Found link https://files.pythonhosted.org/packages/cd/3b/c70443baef1058d1955bfe476d521a4ad423958bf349527cf75cb3e892a5/gtdbtk-1.0.2.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.0.2
2023-03-16T04:27:40,011   Found link https://files.pythonhosted.org/packages/f0/28/78411977ec02799a3a16a08ba9ea036851fd23d26126a583d7a4dbd7e129/gtdbtk-1.1.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.1.0
2023-03-16T04:27:40,012   Found link https://files.pythonhosted.org/packages/68/d0/bcdb38880ed7e0d0ae563c62b1f192b1d77a35a0d00b193f9e5a01817454/gtdbtk-1.1.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.1.1
2023-03-16T04:27:40,013   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/f3/56/60ff2a296580b4e5741592ad17ca874ba024f7f5c9c225d7cadfb9cfd54f/gtdbtk-1.2.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,014   Found link https://files.pythonhosted.org/packages/fd/9d/2060d8cdefde94050a969360e8b1343d6c441b35f57ca3000ec2b8c0c950/gtdbtk-1.2.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.2.0
2023-03-16T04:27:40,015   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/ef/47/293fd1fa9548d876d0da7f2a99a3784614850d84f9667dc08c1d28a50737/gtdbtk-1.3.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,016   Found link https://files.pythonhosted.org/packages/f0/bf/775eb9ba5e42ab33977228a3121db7f66c8b8ac422e0c8df7a51e14410b3/gtdbtk-1.3.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.3.0
2023-03-16T04:27:40,017   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/b9/4c/21a649b385d9c95f1da010261b1160334907d6192248b5b42ff2ebdafeb7/gtdbtk-1.4.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,018   Found link https://files.pythonhosted.org/packages/b7/6e/ff1416c31ab6b7034ac774ebe49b840e10f5ca1fd6469dc2e6b784718aeb/gtdbtk-1.4.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.4.0
2023-03-16T04:27:40,019   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/57/13/fc0f865fde7d1732821f7fde3f5ba91081128691bfb31420e1cc580f4cef/gtdbtk-1.4.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,020   Found link https://files.pythonhosted.org/packages/a0/e4/c7425e61d690b4eb1d04b586a76b760b11e1be576d0d2baacf0d7b341d21/gtdbtk-1.4.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.4.1
2023-03-16T04:27:40,021   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/50/13/0a4cca6299f809c1c0e760c735053137c3a4aff2b646b91b121e203203ee/gtdbtk-1.5.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,022   Found link https://files.pythonhosted.org/packages/e7/df/64901f44cf635a6bbed28f66a13c7dbe0ac4c29afc28e07cd5d9b1730efe/gtdbtk-1.5.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.5.0
2023-03-16T04:27:40,023   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/f3/17/383985ce3c67ab7c7d83753cc6792f4ddbce4c7bc5728765c9000b116962/gtdbtk-1.5.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,024   Found link https://files.pythonhosted.org/packages/46/7d/42643d2bed1eb3406a32c8cedd4be15aa03a47a29d09c2be1498b0602428/gtdbtk-1.5.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.5.1
2023-03-16T04:27:40,025   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/34/43/30519d579e26c5b2bf8370bcdc49e4b7805bf0445b766f54459e2fa1560c/gtdbtk-1.6.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,026   Found link https://files.pythonhosted.org/packages/e5/0b/c809fdd5da93a76edcb388c8ce5bf0f9836df548fb5e73c1bd4a90de0c3c/gtdbtk-1.6.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.6.0
2023-03-16T04:27:40,027   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/4a/cc/631e798a8f921fc6c504591472e34a04c2868f7ce7fdfc1b3c1cb5a81c05/gtdbtk-1.7.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,028   Found link https://files.pythonhosted.org/packages/a0/eb/859b20c3adeb96ca72f242bc31cd30319c2bd6e4d130c13aba0b76d2fe34/gtdbtk-1.7.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.7.0
2023-03-16T04:27:40,029   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/c5/ac/fd59f08a268eab7c094ee1e9b14004c591c3477b11628c9e08aaad2bbaa6/gtdbtk-2.0.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,030   Found link https://files.pythonhosted.org/packages/7e/43/9b3c861f07fa420e9595fdf5f2261c0d1519a01f9e994b6445fb2e263d98/gtdbtk-2.0.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.0.0
2023-03-16T04:27:40,031   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/b8/78/853a62dd98c99a31191df3f6d130834cad0ae00c5159d32cb9667af48943/gtdbtk-2.1.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,032   Found link https://files.pythonhosted.org/packages/5b/b7/6bc0bb66462d3b669ee1e5d39234efec662eed17ea2afa11df918dbe2552/gtdbtk-2.1.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.1.0
2023-03-16T04:27:40,033   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/b9/f4/afbebf8c28c3717584100d8d8d924259314c972abb581d2eb0424a021517/gtdbtk-2.1.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,034   Found link https://files.pythonhosted.org/packages/71/9a/ae98b3aca31a1106fbcf01b4567184e6a8fa5abbb74749e287c3f5238ad8/gtdbtk-2.1.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.1.1
2023-03-16T04:27:40,035   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/30/e5/e497c084510ce4c0898ddb2df2f7d938b5d63de0e26cb42f11600c0c9559/gtdbtk-2.2.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,036   Found link https://files.pythonhosted.org/packages/6d/d7/60f98a610b01d35736088897697c538bbe2f83aa091e6d5cca1a84122ad0/gtdbtk-2.2.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.0
2023-03-16T04:27:40,037   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/3c/ad/d6016544dd8d2dc164569b328307dc09e7029112016b87941180cd3fd3e3/gtdbtk-2.2.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,038   Found link https://files.pythonhosted.org/packages/9c/ce/b46fe9815e149aa238471118f5ffb50d67eab2b4c8a94d1fe3a480052166/gtdbtk-2.2.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.1
2023-03-16T04:27:40,039   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/48/bc/6f4c477f7fe9d4d67abd5a2843c88533570cd482a63e35c1f2589393126f/gtdbtk-2.2.2-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,040   Found link https://files.pythonhosted.org/packages/ee/bb/539be0884928b9906f9a4ffb0118e4501f6f203afda9fe1a5c40b231d150/gtdbtk-2.2.2.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.2
2023-03-16T04:27:40,040   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/02/43/0ba90c5591bea3ec5f2340724f0b5a12da4fe2cebe5a79022be66b406917/gtdbtk-2.2.3-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,042   Found link https://files.pythonhosted.org/packages/51/6d/8a161d447e0d3db86dffe2c684272be3969254b056ef819a270a10e5bdbd/gtdbtk-2.2.3.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.3
2023-03-16T04:27:40,042   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/a5/32/24f75f992865e4e5c761bb04a48ebc510dd91b9f04d5f1424eb5e4161ac4/gtdbtk-2.2.4-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,044   Found link https://files.pythonhosted.org/packages/70/ee/8ae2325f1f084a901575e9dffe8c8e7dae4bb89df809858983281177c0d1/gtdbtk-2.2.4.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.4
2023-03-16T04:27:40,044   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/55/a0/82538604d4f39129c5632cf6d8b26a4b2993e9fd4fecc5f8ca6f0a118be0/gtdbtk-2.2.5-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,046   Found link https://files.pythonhosted.org/packages/29/7b/3aed07a21e615b1b3f0a2fbcf8c7032ffe50d45fd4ffba50f59a12aab20f/gtdbtk-2.2.5.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.5
2023-03-16T04:27:40,047 Fetching project page and analyzing links: https://www.piwheels.org/simple/gtdbtk/
2023-03-16T04:27:40,047 Getting page https://www.piwheels.org/simple/gtdbtk/
2023-03-16T04:27:40,050 Found index url https://www.piwheels.org/simple
2023-03-16T04:27:40,262 Fetched page https://www.piwheels.org/simple/gtdbtk/ as text/html
2023-03-16T04:27:40,295   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.4-py3-none-any.whl#sha256=f20682a7cd468122eebde8ada2d62256fda4c792fb24359eb3cec4802065cfb3 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,295   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.3-py3-none-any.whl#sha256=06f93a7c81ad0d432168b3c6813c6b41c6c62c8c772d3f5a3f7a07026002e417 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,296   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.2-py3-none-any.whl#sha256=b2a2470befeb113d05b7e439d383b55fa4a7bf604d4de4b947eceb0cdd11feb9 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,296   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.1-py3-none-any.whl#sha256=2cf336d7981cf9e722bb1ab210ad70a0fdc421364d66f121ba0ed2764f49d831 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,297   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.1.1-py3-none-any.whl#sha256=9ab09353c8901bf41d042f5dd678b8e4a0b44bd88b9edf99c113095e719fa689 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,297   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.1.0-py3-none-any.whl#sha256=1a3aba4f0aa3916d66fa1b335bc75f3e4275f208aabcf8f52b16cc31c8a28251 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,298   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.0.0-py3-none-any.whl#sha256=3f62231589bd3b33d50492de0f098ded08e2d24736ebe3517140beffd23c6095 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,298   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.7.0-py3-none-any.whl#sha256=1cec9664f2cdcf1d97bc8eb584bfc3973bd54674846aa4af6320e2db8866e97d (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,299   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.6.0-py3-none-any.whl#sha256=b5a207597ad94381e816d097e1e1925df4e5570643272ed7b76db5dd3001ebde (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,299   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.5.1-py3-none-any.whl#sha256=ed5d3a99e31ba670781bfdc0b376d6269e1d683d7385d3508bdfd574f1a16b5c (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,300   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.5.0-py3-none-any.whl#sha256=4d5f2ecca5c2f1e7b279ff1bba63edd378e64f1195c8da6f8d2fe1c37bb1a02e (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,300   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.4.1-py3-none-any.whl#sha256=5bf60e34c9532ee96689ca34330f5f4ad6d344bac28ebdd1925ee4d0326e4345 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,301   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.4.0-py3-none-any.whl#sha256=ead9eb6d9df9b31e5b067e8f9993ef52975d454ab8685e1df66d9e201ac5c596 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,302   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.3.0-py3-none-any.whl#sha256=d7e3fccd83e155a4c737695d252e66a9076b236bed81fc4c193646bd2888ea79 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,302   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.2.0-py3-none-any.whl#sha256=6f16eed44889ee0d388564ccd30cce43c7059cb71fea4178339085d5cda33d84 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,303   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.1.1-py3-none-any.whl#sha256=6015c83a790205e33f5f1a6b18e6dc3f59ed21785e21e2335e333d2a0c2b6149 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,303   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.1.0-py3-none-any.whl#sha256=74644ddd23fa626c60834924b75ff2461cfe146825dfe8cb56ba7aa87f80065c (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,304   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.0.2-py3-none-any.whl#sha256=bcb2aff77a5de8e7ee657b155c07cef65e54ed4c69e75f792746eeb1a116d7d8 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,304   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.0.1-py3-none-any.whl#sha256=4f17b5e884096c03286b38720b63f262572ca3f8c6fcce36fb3a543aa1c45840 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,305   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.0.0-py3-none-any.whl#sha256=3206ab5f69c97d1c89cea39475c4e02c9af7414d02575fde530a36c099cb8f23 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-16T04:27:40,305   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.3-py3-none-any.whl#sha256=053ec454ce316e998d7be98ccd60e1e66e3a77dec93328e15b07f05ad137b0a6 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,306   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.2-py3-none-any.whl#sha256=083ef29deb14040d3795f158fa610a234aabb50077070bbe5a4f4daf32ba70a7 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,306   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.1-py3-none-any.whl#sha256=7c6b5d5774b8c786683f0843a0d30b610640a0ae08e45dac6d1ee6a6145ea7ba (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,307   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.0-py3-none-any.whl#sha256=967042d7d0fb425c296cb4370268936f5efab1086c93bba32aa75b05eb61d5eb (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,307   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.2.2-py3-none-any.whl#sha256=0f2f51b4c73c58071c0e693201460c6b3d67d4a956368ed7b2df1555a9a2d5e3 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,308   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.2.1-py3-none-any.whl#sha256=c3dda689b923a8788e648223335928c657b054fecd8eeb78e5e48e7be5cd3df4 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,308   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.6-py3-none-any.whl#sha256=dd5a03ce2b22ffe66b776fb405e95f4f7a70fed4ba1a7087db1de973f4e22fef (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,309   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.3-py3-none-any.whl#sha256=02c694c6199f0c5db1056131515f4272e703ea6beceffb16678ad3eb24358d8d (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,309   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.2-py3-none-any.whl#sha256=4b75117a7c332187dfb858bffe54fbadf2a9f39960fcc21d2bce0db59b6e114d (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,310   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.1-py3-none-any.whl#sha256=c971843754fb3c11f48ead52c04bc7bd86ddeab289fd362e9e24a9c0fd1f2879 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,310   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.0-py3-none-any.whl#sha256=3133231730578803c78146b89d575c44b9ac4419b598cbb7a3178c13e5175428 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,311   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.8b1-py3-none-any.whl#sha256=f8404616952a9ef6a46543f35e0263365db7dde0f1010383871c30b5db9fc8db (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,311   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.7-py3-none-any.whl#sha256=ff0ee32028021f53551b42ec4d3ddd9e5f3f046795606fc0612f232672e7bbf4 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,312   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.6-py3-none-any.whl#sha256=ed899d29852d0a5921b1d5319f20e5f5b827f30d0a14fd5afa37e9a4eb02f745 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,312   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.5-py3-none-any.whl#sha256=ae582d50ba58fd74c73ec1a0a37f427d3343e9f20fe45389ee098ed5ef99e3f4 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,313   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b3-py3-none-any.whl#sha256=2d5b93346985d7186695de6a4dc010b9abf4e108ec438f449b74705eb7191fc1 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,313   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b2-py3-none-any.whl#sha256=177fdc2bb5e28ee60a931441956acff6b853871395a611bc1404c7f78a2a3f85 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,314   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b1-py3-none-any.whl#sha256=cffebc36f92b7947522a0e8d0fe11d9a7051a036352eb036ca90db5a14e591e1 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,314   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b0-py3-none-any.whl#sha256=1a96ec79753b589c69bb9c881bdedfc0aef683779cb926da47f22e85e77bb203 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,315   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.3-py3-none-any.whl#sha256=6670c151da83c393482600e07c463c74de77ab5776f88a4978d1b7defa71f852 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,315   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.2-py3-none-any.whl#sha256=dac945e10b775b7c8ab5f5b16635bd016d17aacb8a4ad77708ce67dc1b3f3ed6 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,316   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.1-py3-none-any.whl#sha256=05d5353a17e20d9bc2a38528bb3b2e2e28d3188d4ebf69192793cd3e0d5199e6 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-16T04:27:40,316 Skipping link: not a file: https://www.piwheels.org/simple/gtdbtk/
2023-03-16T04:27:40,317 Skipping link: not a file: https://pypi.org/simple/gtdbtk/
2023-03-16T04:27:40,364 Given no hashes to check 1 links for project 'gtdbtk': discarding no candidates
2023-03-16T04:27:40,395 Collecting gtdbtk==2.2.5
2023-03-16T04:27:40,399   Created temporary directory: /tmp/pip-unpack-xtw2x39t
2023-03-16T04:27:40,680   Downloading gtdbtk-2.2.5.tar.gz (1.7 MB)
2023-03-16T04:27:42,271   Added gtdbtk==2.2.5 from https://files.pythonhosted.org/packages/29/7b/3aed07a21e615b1b3f0a2fbcf8c7032ffe50d45fd4ffba50f59a12aab20f/gtdbtk-2.2.5.tar.gz to build tracker '/tmp/pip-build-tracker-424uunun'
2023-03-16T04:27:42,275   Running setup.py (path:/tmp/pip-wheel-cttts9xt/gtdbtk_a295eb167e744d3fb1bd95e00c689b09/setup.py) egg_info for package gtdbtk
2023-03-16T04:27:42,276   Created temporary directory: /tmp/pip-pip-egg-info-3c84a64t
2023-03-16T04:27:42,277   Preparing metadata (setup.py): started
2023-03-16T04:27:42,279   Running command python setup.py egg_info
2023-03-16T04:27:43,787   running egg_info
2023-03-16T04:27:43,789   creating /tmp/pip-pip-egg-info-3c84a64t/gtdbtk.egg-info
2023-03-16T04:27:43,846   writing /tmp/pip-pip-egg-info-3c84a64t/gtdbtk.egg-info/PKG-INFO
2023-03-16T04:27:43,851   writing dependency_links to /tmp/pip-pip-egg-info-3c84a64t/gtdbtk.egg-info/dependency_links.txt
2023-03-16T04:27:43,855   writing entry points to /tmp/pip-pip-egg-info-3c84a64t/gtdbtk.egg-info/entry_points.txt
2023-03-16T04:27:43,858   writing requirements to /tmp/pip-pip-egg-info-3c84a64t/gtdbtk.egg-info/requires.txt
2023-03-16T04:27:43,860   writing top-level names to /tmp/pip-pip-egg-info-3c84a64t/gtdbtk.egg-info/top_level.txt
2023-03-16T04:27:43,862   writing manifest file '/tmp/pip-pip-egg-info-3c84a64t/gtdbtk.egg-info/SOURCES.txt'
2023-03-16T04:27:44,077   reading manifest file '/tmp/pip-pip-egg-info-3c84a64t/gtdbtk.egg-info/SOURCES.txt'
2023-03-16T04:27:44,081   adding license file 'LICENSE'
2023-03-16T04:27:44,094   writing manifest file '/tmp/pip-pip-egg-info-3c84a64t/gtdbtk.egg-info/SOURCES.txt'
2023-03-16T04:27:44,211   Preparing metadata (setup.py): finished with status 'done'
2023-03-16T04:27:44,225   Source in /tmp/pip-wheel-cttts9xt/gtdbtk_a295eb167e744d3fb1bd95e00c689b09 has version 2.2.5, which satisfies requirement gtdbtk==2.2.5 from https://files.pythonhosted.org/packages/29/7b/3aed07a21e615b1b3f0a2fbcf8c7032ffe50d45fd4ffba50f59a12aab20f/gtdbtk-2.2.5.tar.gz
2023-03-16T04:27:44,227   Removed gtdbtk==2.2.5 from https://files.pythonhosted.org/packages/29/7b/3aed07a21e615b1b3f0a2fbcf8c7032ffe50d45fd4ffba50f59a12aab20f/gtdbtk-2.2.5.tar.gz from build tracker '/tmp/pip-build-tracker-424uunun'
2023-03-16T04:27:44,243 Created temporary directory: /tmp/pip-unpack-1y29m4rd
2023-03-16T04:27:44,245 Building wheels for collected packages: gtdbtk
2023-03-16T04:27:44,254   Created temporary directory: /tmp/pip-wheel-vqaen2j6
2023-03-16T04:27:44,255   Building wheel for gtdbtk (setup.py): started
2023-03-16T04:27:44,257   Destination directory: /tmp/pip-wheel-vqaen2j6
2023-03-16T04:27:44,257   Running command python setup.py bdist_wheel
2023-03-16T04:27:46,310   running bdist_wheel
2023-03-16T04:27:46,494   running build
2023-03-16T04:27:46,494   running build_py
2023-03-16T04:27:46,563   creating build
2023-03-16T04:27:46,563   creating build/lib
2023-03-16T04:27:46,566   creating build/lib/gtdbtk
2023-03-16T04:27:46,568   copying gtdbtk/infer_ranks.py -> build/lib/gtdbtk
2023-03-16T04:27:46,573   copying gtdbtk/reroot_tree.py -> build/lib/gtdbtk
2023-03-16T04:27:46,577   copying gtdbtk/main.py -> build/lib/gtdbtk
2023-03-16T04:27:46,585   copying gtdbtk/__init__.py -> build/lib/gtdbtk
2023-03-16T04:27:46,592   copying gtdbtk/tools.py -> build/lib/gtdbtk
2023-03-16T04:27:46,603   copying gtdbtk/misc.py -> build/lib/gtdbtk
2023-03-16T04:27:46,607   copying gtdbtk/ani_screen.py -> build/lib/gtdbtk
2023-03-16T04:27:46,612   copying gtdbtk/decorate.py -> build/lib/gtdbtk
2023-03-16T04:27:46,619   copying gtdbtk/cli.py -> build/lib/gtdbtk
2023-03-16T04:27:46,626   copying gtdbtk/split.py -> build/lib/gtdbtk
2023-03-16T04:27:46,631   copying gtdbtk/relative_distance.py -> build/lib/gtdbtk
2023-03-16T04:27:46,638   copying gtdbtk/__main__.py -> build/lib/gtdbtk
2023-03-16T04:27:46,645   copying gtdbtk/classify.py -> build/lib/gtdbtk
2023-03-16T04:27:46,663   copying gtdbtk/exceptions.py -> build/lib/gtdbtk
2023-03-16T04:27:46,675   copying gtdbtk/ani_rep.py -> build/lib/gtdbtk
2023-03-16T04:27:46,684   copying gtdbtk/trim_msa.py -> build/lib/gtdbtk
2023-03-16T04:27:46,692   copying gtdbtk/markers.py -> build/lib/gtdbtk
2023-03-16T04:27:46,703   creating build/lib/tests
2023-03-16T04:27:46,707   copying tests/test_classify.py -> build/lib/tests
2023-03-16T04:27:46,714   copying tests/__init__.py -> build/lib/tests
2023-03-16T04:27:46,718   copying tests/test_cli.py -> build/lib/tests
2023-03-16T04:27:46,723   copying tests/common.py -> build/lib/tests
2023-03-16T04:27:46,730   creating build/lib/gtdbtk/model
2023-03-16T04:27:46,732   copying gtdbtk/model/__init__.py -> build/lib/gtdbtk/model
2023-03-16T04:27:46,736   copying gtdbtk/model/enum.py -> build/lib/gtdbtk/model
2023-03-16T04:27:46,743   creating build/lib/gtdbtk/files
2023-03-16T04:27:46,745   copying gtdbtk/files/tree_mapping.py -> build/lib/gtdbtk/files
2023-03-16T04:27:46,750   copying gtdbtk/files/__init__.py -> build/lib/gtdbtk/files
2023-03-16T04:27:46,754   copying gtdbtk/files/stage_logger.py -> build/lib/gtdbtk/files
2023-03-16T04:27:46,759   copying gtdbtk/files/pplacer_classification.py -> build/lib/gtdbtk/files
2023-03-16T04:27:46,764   copying gtdbtk/files/gtdb_radii.py -> build/lib/gtdbtk/files
2023-03-16T04:27:46,768   copying gtdbtk/files/classify_summary.py -> build/lib/gtdbtk/files
2023-03-16T04:27:46,773   copying gtdbtk/files/red_dict.py -> build/lib/gtdbtk/files
2023-03-16T04:27:46,778   copying gtdbtk/files/marker_info.py -> build/lib/gtdbtk/files
2023-03-16T04:27:46,781   copying gtdbtk/files/batchfile.py -> build/lib/gtdbtk/files
2023-03-16T04:27:46,785   copying gtdbtk/files/missing_genomes.py -> build/lib/gtdbtk/files
2023-03-16T04:27:46,790   creating build/lib/gtdbtk/pipeline
2023-03-16T04:27:46,791   copying gtdbtk/pipeline/__init__.py -> build/lib/gtdbtk/pipeline
2023-03-16T04:27:46,795   copying gtdbtk/pipeline/export_msa.py -> build/lib/gtdbtk/pipeline
2023-03-16T04:27:46,805   copying gtdbtk/pipeline/align.py -> build/lib/gtdbtk/pipeline
2023-03-16T04:27:46,812   creating build/lib/gtdbtk/external
2023-03-16T04:27:46,814   copying gtdbtk/external/fasttree.py -> build/lib/gtdbtk/external
2023-03-16T04:27:46,818   copying gtdbtk/external/__init__.py -> build/lib/gtdbtk/external
2023-03-16T04:27:46,821   copying gtdbtk/external/fastani.py -> build/lib/gtdbtk/external
2023-03-16T04:27:46,826   copying gtdbtk/external/pfam_search.py -> build/lib/gtdbtk/external
2023-03-16T04:27:46,830   copying gtdbtk/external/mash.py -> build/lib/gtdbtk/external
2023-03-16T04:27:46,835   copying gtdbtk/external/prodigal.py -> build/lib/gtdbtk/external
2023-03-16T04:27:46,839   copying gtdbtk/external/hmm_aligner.py -> build/lib/gtdbtk/external
2023-03-16T04:27:46,844   copying gtdbtk/external/pplacer.py -> build/lib/gtdbtk/external
2023-03-16T04:27:46,849   copying gtdbtk/external/tigrfam_search.py -> build/lib/gtdbtk/external
2023-03-16T04:27:46,856   creating build/lib/gtdbtk/biolib_lite
2023-03-16T04:27:46,858   copying gtdbtk/biolib_lite/seq_io.py -> build/lib/gtdbtk/biolib_lite
2023-03-16T04:27:46,862   copying gtdbtk/biolib_lite/__init__.py -> build/lib/gtdbtk/biolib_lite
2023-03-16T04:27:46,865   copying gtdbtk/biolib_lite/taxonomy.py -> build/lib/gtdbtk/biolib_lite
2023-03-16T04:27:46,871   copying gtdbtk/biolib_lite/prodigal_biolib.py -> build/lib/gtdbtk/biolib_lite
2023-03-16T04:27:46,877   copying gtdbtk/biolib_lite/common.py -> build/lib/gtdbtk/biolib_lite
2023-03-16T04:27:46,881   copying gtdbtk/biolib_lite/parallel.py -> build/lib/gtdbtk/biolib_lite
2023-03-16T04:27:46,886   copying gtdbtk/biolib_lite/execute.py -> build/lib/gtdbtk/biolib_lite
2023-03-16T04:27:46,890   copying gtdbtk/biolib_lite/newick.py -> build/lib/gtdbtk/biolib_lite
2023-03-16T04:27:46,894   copying gtdbtk/biolib_lite/exceptions.py -> build/lib/gtdbtk/biolib_lite
2023-03-16T04:27:46,897   copying gtdbtk/biolib_lite/custom_help_formatter.py -> build/lib/gtdbtk/biolib_lite
2023-03-16T04:27:46,901   copying gtdbtk/biolib_lite/logger.py -> build/lib/gtdbtk/biolib_lite
2023-03-16T04:27:46,907   creating build/lib/gtdbtk/config
2023-03-16T04:27:46,908   copying gtdbtk/config/output.py -> build/lib/gtdbtk/config
2023-03-16T04:27:46,913   copying gtdbtk/config/__init__.py -> build/lib/gtdbtk/config
2023-03-16T04:27:46,916   copying gtdbtk/config/config.py -> build/lib/gtdbtk/config
2023-03-16T04:27:46,922   creating build/lib/gtdbtk/files/marker
2023-03-16T04:27:46,924   copying gtdbtk/files/marker/copy_number.py -> build/lib/gtdbtk/files/marker
2023-03-16T04:27:46,929   copying gtdbtk/files/marker/__init__.py -> build/lib/gtdbtk/files/marker
2023-03-16T04:27:46,932   copying gtdbtk/files/marker/tophit.py -> build/lib/gtdbtk/files/marker
2023-03-16T04:27:46,937   creating build/lib/gtdbtk/files/prodigal
2023-03-16T04:27:46,939   copying gtdbtk/files/prodigal/__init__.py -> build/lib/gtdbtk/files/prodigal
2023-03-16T04:27:46,942   copying gtdbtk/files/prodigal/tln_table.py -> build/lib/gtdbtk/files/prodigal
2023-03-16T04:27:46,946   copying gtdbtk/files/prodigal/tln_table_summary.py -> build/lib/gtdbtk/files/prodigal
2023-03-16T04:27:46,951   creating build/lib/gtdbtk/external/pypfam
2023-03-16T04:27:46,953   copying gtdbtk/external/pypfam/__init__.py -> build/lib/gtdbtk/external/pypfam
2023-03-16T04:27:46,957   creating build/lib/gtdbtk/external/pypfam/Scan
2023-03-16T04:27:46,959   copying gtdbtk/external/pypfam/Scan/__init__.py -> build/lib/gtdbtk/external/pypfam/Scan
2023-03-16T04:27:46,962   copying gtdbtk/external/pypfam/Scan/PfamScan.py -> build/lib/gtdbtk/external/pypfam/Scan
2023-03-16T04:27:46,969   creating build/lib/gtdbtk/external/pypfam/HMM
2023-03-16T04:27:46,971   copying gtdbtk/external/pypfam/HMM/HMMResultsIO.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-03-16T04:27:46,977   copying gtdbtk/external/pypfam/HMM/HMMUnit.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-03-16T04:27:46,980   copying gtdbtk/external/pypfam/HMM/__init__.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-03-16T04:27:46,983   copying gtdbtk/external/pypfam/HMM/HMMSequence.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-03-16T04:27:46,987   copying gtdbtk/external/pypfam/HMM/HMMMatch.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-03-16T04:27:46,991   copying gtdbtk/external/pypfam/HMM/HMMResults.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-03-16T04:27:46,997   creating build/lib/tests/test_gtdbtk
2023-03-16T04:27:46,998   copying tests/test_gtdbtk/__init__.py -> build/lib/tests/test_gtdbtk
2023-03-16T04:27:47,002   copying tests/test_gtdbtk/test_trim_msa.py -> build/lib/tests/test_gtdbtk
2023-03-16T04:27:47,006   copying tests/test_gtdbtk/test_tools.py -> build/lib/tests/test_gtdbtk
2023-03-16T04:27:47,010   copying tests/test_gtdbtk/test__main__.py -> build/lib/tests/test_gtdbtk
2023-03-16T04:27:47,015   copying tests/test_gtdbtk/test_main.py -> build/lib/tests/test_gtdbtk
2023-03-16T04:27:47,019   copying tests/test_gtdbtk/test_markers.py -> build/lib/tests/test_gtdbtk
2023-03-16T04:27:47,024   creating build/lib/tests/test_gtdbtk/test_external
2023-03-16T04:27:47,026   copying tests/test_gtdbtk/test_external/__init__.py -> build/lib/tests/test_gtdbtk/test_external
2023-03-16T04:27:47,029   copying tests/test_gtdbtk/test_external/test_fastani.py -> build/lib/tests/test_gtdbtk/test_external
2023-03-16T04:27:47,033   copying tests/test_gtdbtk/test_external/test_fasttree.py -> build/lib/tests/test_gtdbtk/test_external
2023-03-16T04:27:47,038   creating build/lib/tests/test_gtdbtk/test_files
2023-03-16T04:27:47,040   copying tests/test_gtdbtk/test_files/__init__.py -> build/lib/tests/test_gtdbtk/test_files
2023-03-16T04:27:47,045   creating build/lib/tests/test_gtdbtk/test_biolib_lite
2023-03-16T04:27:47,047   copying tests/test_gtdbtk/test_biolib_lite/test_seq_io.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2023-03-16T04:27:47,053   copying tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2023-03-16T04:27:47,057   copying tests/test_gtdbtk/test_biolib_lite/__init__.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2023-03-16T04:27:47,060   copying tests/test_gtdbtk/test_biolib_lite/test_newick.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2023-03-16T04:27:47,064   copying tests/test_gtdbtk/test_biolib_lite/test_common.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2023-03-16T04:27:47,069   creating build/lib/tests/test_gtdbtk/test_files/test_prodigal
2023-03-16T04:27:47,070   copying tests/test_gtdbtk/test_files/test_prodigal/__init__.py -> build/lib/tests/test_gtdbtk/test_files/test_prodigal
2023-03-16T04:27:47,074   copying tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py -> build/lib/tests/test_gtdbtk/test_files/test_prodigal
2023-03-16T04:27:47,079   creating build/lib/tests/test_gtdbtk/test_files/test_marker
2023-03-16T04:27:47,080   copying tests/test_gtdbtk/test_files/test_marker/__init__.py -> build/lib/tests/test_gtdbtk/test_files/test_marker
2023-03-16T04:27:47,084   copying tests/test_gtdbtk/test_files/test_marker/test_copy_number.py -> build/lib/tests/test_gtdbtk/test_files/test_marker
2023-03-16T04:27:47,089   copying tests/test_gtdbtk/test_files/test_marker/test_tophit.py -> build/lib/tests/test_gtdbtk/test_files/test_marker
2023-03-16T04:27:47,101   creating build/lib/gtdbtk/tests
2023-03-16T04:27:47,102   creating build/lib/gtdbtk/tests/data
2023-03-16T04:27:47,103   creating build/lib/gtdbtk/tests/data/genomes
2023-03-16T04:27:47,105   copying gtdbtk/tests/data/genomes/genome_1.fna -> build/lib/gtdbtk/tests/data/genomes
2023-03-16T04:27:47,264   copying gtdbtk/tests/data/genomes/genome_2.fna -> build/lib/gtdbtk/tests/data/genomes
2023-03-16T04:27:47,332   copying gtdbtk/tests/data/genomes/genome_3.fna -> build/lib/gtdbtk/tests/data/genomes
2023-03-16T04:27:47,493   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2023-03-16T04:27:47,494     setuptools.SetuptoolsDeprecationWarning,
2023-03-16T04:27:47,556   installing to build/bdist.linux-armv7l/wheel
2023-03-16T04:27:47,557   running install
2023-03-16T04:27:47,616   running install_lib
2023-03-16T04:27:47,680   creating build/bdist.linux-armv7l
2023-03-16T04:27:47,681   creating build/bdist.linux-armv7l/wheel
2023-03-16T04:27:47,686   creating build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:47,689   creating build/bdist.linux-armv7l/wheel/gtdbtk/model
2023-03-16T04:27:47,691   copying build/lib/gtdbtk/model/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/model
2023-03-16T04:27:47,695   copying build/lib/gtdbtk/model/enum.py -> build/bdist.linux-armv7l/wheel/gtdbtk/model
2023-03-16T04:27:47,699   copying build/lib/gtdbtk/infer_ranks.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:47,704   copying build/lib/gtdbtk/reroot_tree.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:47,708   copying build/lib/gtdbtk/main.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:47,715   copying build/lib/gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:47,718   copying build/lib/gtdbtk/tools.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:47,725   creating build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-16T04:27:47,726   copying build/lib/gtdbtk/files/tree_mapping.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-16T04:27:47,731   copying build/lib/gtdbtk/files/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-16T04:27:47,733   copying build/lib/gtdbtk/files/stage_logger.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-16T04:27:47,738   copying build/lib/gtdbtk/files/pplacer_classification.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-16T04:27:47,742   creating build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2023-03-16T04:27:47,744   copying build/lib/gtdbtk/files/marker/copy_number.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2023-03-16T04:27:47,749   copying build/lib/gtdbtk/files/marker/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2023-03-16T04:27:47,752   copying build/lib/gtdbtk/files/marker/tophit.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2023-03-16T04:27:47,756   copying build/lib/gtdbtk/files/gtdb_radii.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-16T04:27:47,760   copying build/lib/gtdbtk/files/classify_summary.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-16T04:27:47,765   creating build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2023-03-16T04:27:47,767   copying build/lib/gtdbtk/files/prodigal/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2023-03-16T04:27:47,770   copying build/lib/gtdbtk/files/prodigal/tln_table.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2023-03-16T04:27:47,773   copying build/lib/gtdbtk/files/prodigal/tln_table_summary.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2023-03-16T04:27:47,777   copying build/lib/gtdbtk/files/red_dict.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-16T04:27:47,781   copying build/lib/gtdbtk/files/marker_info.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-16T04:27:47,784   copying build/lib/gtdbtk/files/batchfile.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-16T04:27:47,788   copying build/lib/gtdbtk/files/missing_genomes.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-16T04:27:47,791   copying build/lib/gtdbtk/misc.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:47,796   copying build/lib/gtdbtk/ani_screen.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:47,799   copying build/lib/gtdbtk/decorate.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:47,805   creating build/bdist.linux-armv7l/wheel/gtdbtk/tests
2023-03-16T04:27:47,808   creating build/bdist.linux-armv7l/wheel/gtdbtk/tests/data
2023-03-16T04:27:47,811   creating build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2023-03-16T04:27:47,812   copying build/lib/gtdbtk/tests/data/genomes/genome_1.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2023-03-16T04:27:47,955   copying build/lib/gtdbtk/tests/data/genomes/genome_2.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2023-03-16T04:27:48,019   copying build/lib/gtdbtk/tests/data/genomes/genome_3.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2023-03-16T04:27:48,081   copying build/lib/gtdbtk/cli.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:48,087   copying build/lib/gtdbtk/split.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:48,093   creating build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2023-03-16T04:27:48,095   copying build/lib/gtdbtk/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2023-03-16T04:27:48,099   copying build/lib/gtdbtk/pipeline/export_msa.py -> build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2023-03-16T04:27:48,103   copying build/lib/gtdbtk/pipeline/align.py -> build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2023-03-16T04:27:48,108   copying build/lib/gtdbtk/relative_distance.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:48,115   creating build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-16T04:27:48,117   copying build/lib/gtdbtk/external/fasttree.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-16T04:27:48,123   creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam
2023-03-16T04:27:48,126   copying build/lib/gtdbtk/external/pypfam/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam
2023-03-16T04:27:48,131   creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan
2023-03-16T04:27:48,133   copying build/lib/gtdbtk/external/pypfam/Scan/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan
2023-03-16T04:27:48,137   copying build/lib/gtdbtk/external/pypfam/Scan/PfamScan.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan
2023-03-16T04:27:48,143   creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-03-16T04:27:48,146   copying build/lib/gtdbtk/external/pypfam/HMM/HMMResultsIO.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-03-16T04:27:48,152   copying build/lib/gtdbtk/external/pypfam/HMM/HMMUnit.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-03-16T04:27:48,157   copying build/lib/gtdbtk/external/pypfam/HMM/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-03-16T04:27:48,160   copying build/lib/gtdbtk/external/pypfam/HMM/HMMSequence.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-03-16T04:27:48,164   copying build/lib/gtdbtk/external/pypfam/HMM/HMMMatch.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-03-16T04:27:48,169   copying build/lib/gtdbtk/external/pypfam/HMM/HMMResults.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-03-16T04:27:48,173   copying build/lib/gtdbtk/external/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-16T04:27:48,177   copying build/lib/gtdbtk/external/fastani.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-16T04:27:48,182   copying build/lib/gtdbtk/external/pfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-16T04:27:48,187   copying build/lib/gtdbtk/external/mash.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-16T04:27:48,192   copying build/lib/gtdbtk/external/prodigal.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-16T04:27:48,197   copying build/lib/gtdbtk/external/hmm_aligner.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-16T04:27:48,203   copying build/lib/gtdbtk/external/pplacer.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-16T04:27:48,208   copying build/lib/gtdbtk/external/tigrfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-16T04:27:48,213   copying build/lib/gtdbtk/__main__.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:48,218   copying build/lib/gtdbtk/classify.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:48,229   copying build/lib/gtdbtk/exceptions.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:48,233   copying build/lib/gtdbtk/ani_rep.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:48,239   copying build/lib/gtdbtk/trim_msa.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:48,245   creating build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-16T04:27:48,248   copying build/lib/gtdbtk/biolib_lite/seq_io.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-16T04:27:48,253   copying build/lib/gtdbtk/biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-16T04:27:48,257   copying build/lib/gtdbtk/biolib_lite/taxonomy.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-16T04:27:48,263   copying build/lib/gtdbtk/biolib_lite/prodigal_biolib.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-16T04:27:48,268   copying build/lib/gtdbtk/biolib_lite/common.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-16T04:27:48,273   copying build/lib/gtdbtk/biolib_lite/parallel.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-16T04:27:48,279   copying build/lib/gtdbtk/biolib_lite/execute.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-16T04:27:48,283   copying build/lib/gtdbtk/biolib_lite/newick.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-16T04:27:48,287   copying build/lib/gtdbtk/biolib_lite/exceptions.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-16T04:27:48,290   copying build/lib/gtdbtk/biolib_lite/custom_help_formatter.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-16T04:27:48,295   copying build/lib/gtdbtk/biolib_lite/logger.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-16T04:27:48,300   copying build/lib/gtdbtk/markers.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-16T04:27:48,307   creating build/bdist.linux-armv7l/wheel/gtdbtk/config
2023-03-16T04:27:48,309   copying build/lib/gtdbtk/config/output.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
2023-03-16T04:27:48,314   copying build/lib/gtdbtk/config/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
2023-03-16T04:27:48,317   copying build/lib/gtdbtk/config/config.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
2023-03-16T04:27:48,323   creating build/bdist.linux-armv7l/wheel/tests
2023-03-16T04:27:48,325   copying build/lib/tests/test_classify.py -> build/bdist.linux-armv7l/wheel/tests
2023-03-16T04:27:48,330   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2023-03-16T04:27:48,333   copying build/lib/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/tests
2023-03-16T04:27:48,338   copying build/lib/tests/common.py -> build/bdist.linux-armv7l/wheel/tests
2023-03-16T04:27:48,343   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-03-16T04:27:48,345   copying build/lib/tests/test_gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-03-16T04:27:48,348   copying build/lib/tests/test_gtdbtk/test_trim_msa.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-03-16T04:27:48,352   copying build/lib/tests/test_gtdbtk/test_tools.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-03-16T04:27:48,358   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2023-03-16T04:27:48,359   copying build/lib/tests/test_gtdbtk/test_external/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2023-03-16T04:27:48,363   copying build/lib/tests/test_gtdbtk/test_external/test_fastani.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2023-03-16T04:27:48,367   copying build/lib/tests/test_gtdbtk/test_external/test_fasttree.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2023-03-16T04:27:48,372   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files
2023-03-16T04:27:48,373   copying build/lib/tests/test_gtdbtk/test_files/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files
2023-03-16T04:27:48,378   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_prodigal
2023-03-16T04:27:48,380   copying build/lib/tests/test_gtdbtk/test_files/test_prodigal/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_prodigal
2023-03-16T04:27:48,383   copying build/lib/tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_prodigal
2023-03-16T04:27:48,388   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2023-03-16T04:27:48,390   copying build/lib/tests/test_gtdbtk/test_files/test_marker/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2023-03-16T04:27:48,393   copying build/lib/tests/test_gtdbtk/test_files/test_marker/test_copy_number.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2023-03-16T04:27:48,398   copying build/lib/tests/test_gtdbtk/test_files/test_marker/test_tophit.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2023-03-16T04:27:48,402   copying build/lib/tests/test_gtdbtk/test__main__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-03-16T04:27:48,407   copying build/lib/tests/test_gtdbtk/test_main.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-03-16T04:27:48,426   copying build/lib/tests/test_gtdbtk/test_markers.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-03-16T04:27:48,431   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-03-16T04:27:48,433   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_seq_io.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-03-16T04:27:48,437   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-03-16T04:27:48,440   copying build/lib/tests/test_gtdbtk/test_biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-03-16T04:27:48,443   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_newick.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-03-16T04:27:48,447   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_common.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-03-16T04:27:48,450   running install_data
2023-03-16T04:27:48,513   creating build/bdist.linux-armv7l/wheel/gtdbtk-2.2.5.data
2023-03-16T04:27:48,514   creating build/bdist.linux-armv7l/wheel/gtdbtk-2.2.5.data/data
2023-03-16T04:27:48,517   copying LICENSE -> build/bdist.linux-armv7l/wheel/gtdbtk-2.2.5.data/data/
2023-03-16T04:27:48,523   running install_egg_info
2023-03-16T04:27:48,674   running egg_info
2023-03-16T04:27:48,735   writing gtdbtk.egg-info/PKG-INFO
2023-03-16T04:27:48,740   writing dependency_links to gtdbtk.egg-info/dependency_links.txt
2023-03-16T04:27:48,745   writing entry points to gtdbtk.egg-info/entry_points.txt
2023-03-16T04:27:48,748   writing requirements to gtdbtk.egg-info/requires.txt
2023-03-16T04:27:48,751   writing top-level names to gtdbtk.egg-info/top_level.txt
2023-03-16T04:27:48,847   reading manifest file 'gtdbtk.egg-info/SOURCES.txt'
2023-03-16T04:27:48,857   adding license file 'LICENSE'
2023-03-16T04:27:48,874   writing manifest file 'gtdbtk.egg-info/SOURCES.txt'
2023-03-16T04:27:48,878   Copying gtdbtk.egg-info to build/bdist.linux-armv7l/wheel/gtdbtk-2.2.5-py3.7.egg-info
2023-03-16T04:27:48,903   running install_scripts
2023-03-16T04:27:48,943   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2023-03-16T04:27:48,955   creating build/bdist.linux-armv7l/wheel/gtdbtk-2.2.5.dist-info/WHEEL
2023-03-16T04:27:48,961   creating '/tmp/pip-wheel-vqaen2j6/gtdbtk-2.2.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-03-16T04:27:48,968   adding 'gtdbtk/__init__.py'
2023-03-16T04:27:48,972   adding 'gtdbtk/__main__.py'
2023-03-16T04:27:48,977   adding 'gtdbtk/ani_rep.py'
2023-03-16T04:27:48,981   adding 'gtdbtk/ani_screen.py'
2023-03-16T04:27:49,009   adding 'gtdbtk/classify.py'
2023-03-16T04:27:49,018   adding 'gtdbtk/cli.py'
2023-03-16T04:27:49,025   adding 'gtdbtk/decorate.py'
2023-03-16T04:27:49,029   adding 'gtdbtk/exceptions.py'
2023-03-16T04:27:49,034   adding 'gtdbtk/infer_ranks.py'
2023-03-16T04:27:49,046   adding 'gtdbtk/main.py'
2023-03-16T04:27:49,058   adding 'gtdbtk/markers.py'
2023-03-16T04:27:49,063   adding 'gtdbtk/misc.py'
2023-03-16T04:27:49,069   adding 'gtdbtk/relative_distance.py'
2023-03-16T04:27:49,073   adding 'gtdbtk/reroot_tree.py'
2023-03-16T04:27:49,079   adding 'gtdbtk/split.py'
2023-03-16T04:27:49,084   adding 'gtdbtk/tools.py'
2023-03-16T04:27:49,089   adding 'gtdbtk/trim_msa.py'
2023-03-16T04:27:49,093   adding 'gtdbtk/biolib_lite/__init__.py'
2023-03-16T04:27:49,096   adding 'gtdbtk/biolib_lite/common.py'
2023-03-16T04:27:49,099   adding 'gtdbtk/biolib_lite/custom_help_formatter.py'
2023-03-16T04:27:49,102   adding 'gtdbtk/biolib_lite/exceptions.py'
2023-03-16T04:27:49,105   adding 'gtdbtk/biolib_lite/execute.py'
2023-03-16T04:27:49,109   adding 'gtdbtk/biolib_lite/logger.py'
2023-03-16T04:27:49,112   adding 'gtdbtk/biolib_lite/newick.py'
2023-03-16T04:27:49,116   adding 'gtdbtk/biolib_lite/parallel.py'
2023-03-16T04:27:49,121   adding 'gtdbtk/biolib_lite/prodigal_biolib.py'
2023-03-16T04:27:49,125   adding 'gtdbtk/biolib_lite/seq_io.py'
2023-03-16T04:27:49,133   adding 'gtdbtk/biolib_lite/taxonomy.py'
2023-03-16T04:27:49,137   adding 'gtdbtk/config/__init__.py'
2023-03-16T04:27:49,141   adding 'gtdbtk/config/config.py'
2023-03-16T04:27:49,145   adding 'gtdbtk/config/output.py'
2023-03-16T04:27:49,148   adding 'gtdbtk/external/__init__.py'
2023-03-16T04:27:49,153   adding 'gtdbtk/external/fastani.py'
2023-03-16T04:27:49,157   adding 'gtdbtk/external/fasttree.py'
2023-03-16T04:27:49,162   adding 'gtdbtk/external/hmm_aligner.py'
2023-03-16T04:27:49,167   adding 'gtdbtk/external/mash.py'
2023-03-16T04:27:49,171   adding 'gtdbtk/external/pfam_search.py'
2023-03-16T04:27:49,175   adding 'gtdbtk/external/pplacer.py'
2023-03-16T04:27:49,179   adding 'gtdbtk/external/prodigal.py'
2023-03-16T04:27:49,183   adding 'gtdbtk/external/tigrfam_search.py'
2023-03-16T04:27:49,186   adding 'gtdbtk/external/pypfam/__init__.py'
2023-03-16T04:27:49,190   adding 'gtdbtk/external/pypfam/HMM/HMMMatch.py'
2023-03-16T04:27:49,193   adding 'gtdbtk/external/pypfam/HMM/HMMResults.py'
2023-03-16T04:27:49,199   adding 'gtdbtk/external/pypfam/HMM/HMMResultsIO.py'
2023-03-16T04:27:49,202   adding 'gtdbtk/external/pypfam/HMM/HMMSequence.py'
2023-03-16T04:27:49,205   adding 'gtdbtk/external/pypfam/HMM/HMMUnit.py'
2023-03-16T04:27:49,207   adding 'gtdbtk/external/pypfam/HMM/__init__.py'
2023-03-16T04:27:49,214   adding 'gtdbtk/external/pypfam/Scan/PfamScan.py'
2023-03-16T04:27:49,217   adding 'gtdbtk/external/pypfam/Scan/__init__.py'
2023-03-16T04:27:49,220   adding 'gtdbtk/files/__init__.py'
2023-03-16T04:27:49,223   adding 'gtdbtk/files/batchfile.py'
2023-03-16T04:27:49,227   adding 'gtdbtk/files/classify_summary.py'
2023-03-16T04:27:49,230   adding 'gtdbtk/files/gtdb_radii.py'
2023-03-16T04:27:49,233   adding 'gtdbtk/files/marker_info.py'
2023-03-16T04:27:49,235   adding 'gtdbtk/files/missing_genomes.py'
2023-03-16T04:27:49,239   adding 'gtdbtk/files/pplacer_classification.py'
2023-03-16T04:27:49,241   adding 'gtdbtk/files/red_dict.py'
2023-03-16T04:27:49,245   adding 'gtdbtk/files/stage_logger.py'
2023-03-16T04:27:49,248   adding 'gtdbtk/files/tree_mapping.py'
2023-03-16T04:27:49,252   adding 'gtdbtk/files/marker/__init__.py'
2023-03-16T04:27:49,255   adding 'gtdbtk/files/marker/copy_number.py'
2023-03-16T04:27:49,259   adding 'gtdbtk/files/marker/tophit.py'
2023-03-16T04:27:49,262   adding 'gtdbtk/files/prodigal/__init__.py'
2023-03-16T04:27:49,265   adding 'gtdbtk/files/prodigal/tln_table.py'
2023-03-16T04:27:49,268   adding 'gtdbtk/files/prodigal/tln_table_summary.py'
2023-03-16T04:27:49,271   adding 'gtdbtk/model/__init__.py'
2023-03-16T04:27:49,274   adding 'gtdbtk/model/enum.py'
2023-03-16T04:27:49,277   adding 'gtdbtk/pipeline/__init__.py'
2023-03-16T04:27:49,281   adding 'gtdbtk/pipeline/align.py'
2023-03-16T04:27:49,283   adding 'gtdbtk/pipeline/export_msa.py'
2023-03-16T04:27:53,245   adding 'gtdbtk/tests/data/genomes/genome_1.fna'
2023-03-16T04:27:55,055   adding 'gtdbtk/tests/data/genomes/genome_2.fna'
2023-03-16T04:27:56,701   adding 'gtdbtk/tests/data/genomes/genome_3.fna'
2023-03-16T04:27:56,742   adding 'gtdbtk-2.2.5.data/data/LICENSE'
2023-03-16T04:27:56,749   adding 'tests/__init__.py'
2023-03-16T04:27:56,752   adding 'tests/common.py'
2023-03-16T04:27:56,755   adding 'tests/test_classify.py'
2023-03-16T04:27:56,759   adding 'tests/test_cli.py'
2023-03-16T04:27:56,763   adding 'tests/test_gtdbtk/__init__.py'
2023-03-16T04:27:56,767   adding 'tests/test_gtdbtk/test__main__.py'
2023-03-16T04:27:56,771   adding 'tests/test_gtdbtk/test_main.py'
2023-03-16T04:27:56,774   adding 'tests/test_gtdbtk/test_markers.py'
2023-03-16T04:27:56,777   adding 'tests/test_gtdbtk/test_tools.py'
2023-03-16T04:27:56,780   adding 'tests/test_gtdbtk/test_trim_msa.py'
2023-03-16T04:27:56,784   adding 'tests/test_gtdbtk/test_biolib_lite/__init__.py'
2023-03-16T04:27:56,787   adding 'tests/test_gtdbtk/test_biolib_lite/test_common.py'
2023-03-16T04:27:56,790   adding 'tests/test_gtdbtk/test_biolib_lite/test_newick.py'
2023-03-16T04:27:56,793   adding 'tests/test_gtdbtk/test_biolib_lite/test_seq_io.py'
2023-03-16T04:27:56,796   adding 'tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py'
2023-03-16T04:27:56,800   adding 'tests/test_gtdbtk/test_external/__init__.py'
2023-03-16T04:27:56,803   adding 'tests/test_gtdbtk/test_external/test_fastani.py'
2023-03-16T04:27:56,806   adding 'tests/test_gtdbtk/test_external/test_fasttree.py'
2023-03-16T04:27:56,809   adding 'tests/test_gtdbtk/test_files/__init__.py'
2023-03-16T04:27:56,813   adding 'tests/test_gtdbtk/test_files/test_marker/__init__.py'
2023-03-16T04:27:56,817   adding 'tests/test_gtdbtk/test_files/test_marker/test_copy_number.py'
2023-03-16T04:27:56,820   adding 'tests/test_gtdbtk/test_files/test_marker/test_tophit.py'
2023-03-16T04:27:56,824   adding 'tests/test_gtdbtk/test_files/test_prodigal/__init__.py'
2023-03-16T04:27:56,827   adding 'tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py'
2023-03-16T04:27:56,841   adding 'gtdbtk-2.2.5.dist-info/LICENSE'
2023-03-16T04:27:56,846   adding 'gtdbtk-2.2.5.dist-info/METADATA'
2023-03-16T04:27:56,848   adding 'gtdbtk-2.2.5.dist-info/WHEEL'
2023-03-16T04:27:56,849   adding 'gtdbtk-2.2.5.dist-info/entry_points.txt'
2023-03-16T04:27:56,851   adding 'gtdbtk-2.2.5.dist-info/top_level.txt'
2023-03-16T04:27:56,855   adding 'gtdbtk-2.2.5.dist-info/RECORD'
2023-03-16T04:27:56,928   removing build/bdist.linux-armv7l/wheel
2023-03-16T04:27:57,151   Building wheel for gtdbtk (setup.py): finished with status 'done'
2023-03-16T04:27:57,212   Created wheel for gtdbtk: filename=gtdbtk-2.2.5-py3-none-any.whl size=1828677 sha256=373f24c03ca4a533fc30378cc753ef810c9943df2fe1f361d39b11133869f81e
2023-03-16T04:27:57,214   Stored in directory: /tmp/pip-ephem-wheel-cache-_dm5rcyn/wheels/90/24/9b/6d29b5f6d0b34312b02255c09a9db195e77b59a124f0ab9756
2023-03-16T04:27:57,254 Successfully built gtdbtk
2023-03-16T04:27:57,414 Removed build tracker: '/tmp/pip-build-tracker-424uunun'