2023-03-16T23:42:15,532 Created temporary directory: /tmp/pip-ephem-wheel-cache-_q7f3bs5
2023-03-16T23:42:15,535 Created temporary directory: /tmp/pip-build-tracker-vd13arsd
2023-03-16T23:42:15,535 Initialized build tracking at /tmp/pip-build-tracker-vd13arsd
2023-03-16T23:42:15,535 Created build tracker: /tmp/pip-build-tracker-vd13arsd
2023-03-16T23:42:15,535 Entered build tracker: /tmp/pip-build-tracker-vd13arsd
2023-03-16T23:42:15,536 Created temporary directory: /tmp/pip-wheel-2zeipkw5
2023-03-16T23:42:15,541 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-16T23:42:15,543 Created temporary directory: /tmp/pip-ephem-wheel-cache-zzzf1ldm
2023-03-16T23:42:15,569 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-16T23:42:15,572 2 location(s) to search for versions of linearfold:
2023-03-16T23:42:15,572 * https://pypi.org/simple/linearfold/
2023-03-16T23:42:15,572 * https://www.piwheels.org/simple/linearfold/
2023-03-16T23:42:15,573 Fetching project page and analyzing links: https://pypi.org/simple/linearfold/
2023-03-16T23:42:15,573 Getting page https://pypi.org/simple/linearfold/
2023-03-16T23:42:15,575 Found index url https://pypi.org/simple
2023-03-16T23:42:15,626 Fetched page https://pypi.org/simple/linearfold/ as application/vnd.pypi.simple.v1+json
2023-03-16T23:42:15,628   Skipping link: No binaries permitted for linearfold: https://files.pythonhosted.org/packages/f0/a0/48e3487b631621f1c8dc77248420a53260cd38d1749312d52bf03c63f62a/LinearFold-1.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/linearfold/) (requires-python:>3.5.2)
2023-03-16T23:42:15,628   Found link https://files.pythonhosted.org/packages/57/1c/f5fc1b7ab5695d31128955a3e55f7974c3b14fdeb71dc4ec0320274e370e/LinearFold-1.0.tar.gz (from https://pypi.org/simple/linearfold/) (requires-python:>3.5.2), version: 1.0
2023-03-16T23:42:15,629   Skipping link: No binaries permitted for linearfold: https://files.pythonhosted.org/packages/07/90/01f88547ba2851e4a1b9c921e06ba42455b6707c70e0b6fcbef57970b02b/LinearFold-1.1-cp39-cp39-macosx_10_9_universal2.whl (from https://pypi.org/simple/linearfold/) (requires-python:>3.5.2)
2023-03-16T23:42:15,629   Found link https://files.pythonhosted.org/packages/60/c1/ddd3b6d86f5253f49cfc34af1afdf1c818b166b6d7895c9d54cb023771be/LinearFold-1.1.tar.gz (from https://pypi.org/simple/linearfold/) (requires-python:>3.5.2), version: 1.1
2023-03-16T23:42:15,629 Fetching project page and analyzing links: https://www.piwheels.org/simple/linearfold/
2023-03-16T23:42:15,630 Getting page https://www.piwheels.org/simple/linearfold/
2023-03-16T23:42:15,631 Found index url https://www.piwheels.org/simple
2023-03-16T23:42:15,796 Fetched page https://www.piwheels.org/simple/linearfold/ as text/html
2023-03-16T23:42:15,799   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.1-cp37-cp37m-linux_armv7l.whl#sha256=828bf600b4c4f40907b7ad01952d4c6a0c46eee1cd95c9eb4f0e1f0eaead9805 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2023-03-16T23:42:15,799   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.1-cp37-cp37m-linux_armv6l.whl#sha256=828bf600b4c4f40907b7ad01952d4c6a0c46eee1cd95c9eb4f0e1f0eaead9805 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2023-03-16T23:42:15,799   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.0-cp39-cp39-linux_armv7l.whl#sha256=8250685a0fd51ebae8f8caec4143af60deed33a543ebcaa9f44fb01c2c0838a2 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2023-03-16T23:42:15,800   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.0-cp39-cp39-linux_armv6l.whl#sha256=8250685a0fd51ebae8f8caec4143af60deed33a543ebcaa9f44fb01c2c0838a2 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2023-03-16T23:42:15,800   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.0-cp37-cp37m-linux_armv7l.whl#sha256=ecd6daf4fde8e567337d12acf41d096b8b99af5ef01a80bded062797e4a4f495 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2023-03-16T23:42:15,800   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.0-cp37-cp37m-linux_armv6l.whl#sha256=ecd6daf4fde8e567337d12acf41d096b8b99af5ef01a80bded062797e4a4f495 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2023-03-16T23:42:15,800 Skipping link: not a file: https://www.piwheels.org/simple/linearfold/
2023-03-16T23:42:15,801 Skipping link: not a file: https://pypi.org/simple/linearfold/
2023-03-16T23:42:15,819 Given no hashes to check 1 links for project 'linearfold': discarding no candidates
2023-03-16T23:42:15,836 Collecting linearfold==1.1
2023-03-16T23:42:15,838   Created temporary directory: /tmp/pip-unpack-n4nlqu6w
2023-03-16T23:42:15,881   Downloading LinearFold-1.1.tar.gz (54 kB)
2023-03-16T23:42:15,990   Added linearfold==1.1 from https://files.pythonhosted.org/packages/60/c1/ddd3b6d86f5253f49cfc34af1afdf1c818b166b6d7895c9d54cb023771be/LinearFold-1.1.tar.gz to build tracker '/tmp/pip-build-tracker-vd13arsd'
2023-03-16T23:42:15,991   Running setup.py (path:/tmp/pip-wheel-2zeipkw5/linearfold_da539a873cb54c30b443dc8b0a0196ad/setup.py) egg_info for package linearfold
2023-03-16T23:42:15,992   Created temporary directory: /tmp/pip-pip-egg-info-kp799zau
2023-03-16T23:42:15,992   Preparing metadata (setup.py): started
2023-03-16T23:42:15,993   Running command python setup.py egg_info
2023-03-16T23:42:16,832   running egg_info
2023-03-16T23:42:16,836   creating /tmp/pip-pip-egg-info-kp799zau/LinearFold.egg-info
2023-03-16T23:42:16,859   writing /tmp/pip-pip-egg-info-kp799zau/LinearFold.egg-info/PKG-INFO
2023-03-16T23:42:16,862   writing dependency_links to /tmp/pip-pip-egg-info-kp799zau/LinearFold.egg-info/dependency_links.txt
2023-03-16T23:42:16,865   writing top-level names to /tmp/pip-pip-egg-info-kp799zau/LinearFold.egg-info/top_level.txt
2023-03-16T23:42:16,866   writing manifest file '/tmp/pip-pip-egg-info-kp799zau/LinearFold.egg-info/SOURCES.txt'
2023-03-16T23:42:16,932   reading manifest file '/tmp/pip-pip-egg-info-kp799zau/LinearFold.egg-info/SOURCES.txt'
2023-03-16T23:42:16,934   reading manifest template 'MANIFEST.in'
2023-03-16T23:42:16,936   warning: no files found matching 'VERSION'
2023-03-16T23:42:16,949   adding license file 'LICENSE'
2023-03-16T23:42:16,949   adding license file 'AUTHORS'
2023-03-16T23:42:16,952   writing manifest file '/tmp/pip-pip-egg-info-kp799zau/LinearFold.egg-info/SOURCES.txt'
2023-03-16T23:42:17,022   Preparing metadata (setup.py): finished with status 'done'
2023-03-16T23:42:17,028   Source in /tmp/pip-wheel-2zeipkw5/linearfold_da539a873cb54c30b443dc8b0a0196ad has version 1.1, which satisfies requirement linearfold==1.1 from https://files.pythonhosted.org/packages/60/c1/ddd3b6d86f5253f49cfc34af1afdf1c818b166b6d7895c9d54cb023771be/LinearFold-1.1.tar.gz
2023-03-16T23:42:17,029   Removed linearfold==1.1 from https://files.pythonhosted.org/packages/60/c1/ddd3b6d86f5253f49cfc34af1afdf1c818b166b6d7895c9d54cb023771be/LinearFold-1.1.tar.gz from build tracker '/tmp/pip-build-tracker-vd13arsd'
2023-03-16T23:42:17,036 Created temporary directory: /tmp/pip-unpack-iotxz5zz
2023-03-16T23:42:17,036 Building wheels for collected packages: linearfold
2023-03-16T23:42:17,041   Created temporary directory: /tmp/pip-wheel-puua5lxl
2023-03-16T23:42:17,041   Building wheel for linearfold (setup.py): started
2023-03-16T23:42:17,042   Destination directory: /tmp/pip-wheel-puua5lxl
2023-03-16T23:42:17,042   Running command python setup.py bdist_wheel
2023-03-16T23:42:18,011   running bdist_wheel
2023-03-16T23:42:18,103   running build
2023-03-16T23:42:18,103   running build_ext
2023-03-16T23:42:18,111   building 'LinearFold' extension
2023-03-16T23:42:18,111   creating build
2023-03-16T23:42:18,112   creating build/temp.linux-armv7l-cpython-39
2023-03-16T23:42:18,113   creating build/temp.linux-armv7l-cpython-39/src
2023-03-16T23:42:18,114   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I. -I... -I/tmp/pip-wheel-2zeipkw5/linearfold_da539a873cb54c30b443dc8b0a0196ad/src -I/tmp/pip-wheel-2zeipkw5/linearfold_da539a873cb54c30b443dc8b0a0196ad/src/Utils -I/usr/include/python3.9 -c src/python.cpp -o build/temp.linux-armv7l-cpython-39/src/python.o -w -Dlv -Dis_cube_pruning -Dis_candidate_list -std=c++11
2023-03-16T23:42:28,392   In file included from /usr/include/c++/10/vector:72,
2023-03-16T23:42:28,393                    from src/LinearFold.h:14,
2023-03-16T23:42:28,393                    from src/python.cpp:16:
2023-03-16T23:42:28,393   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-03-16T23:42:28,393   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-03-16T23:42:28,393     426 |       vector<_Tp, _Alloc>::
2023-03-16T23:42:28,394         |       ^~~~~~~~~~~~~~~~~~~
2023-03-16T23:42:38,217   /usr/include/c++/10/bits/vector.tcc: In constructor ‘BeamCKYParser::BeamCKYParser(int, bool, bool, bool, bool, float, std::string)’:
2023-03-16T23:42:38,217   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-03-16T23:42:38,218     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2023-03-16T23:42:38,218         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-03-16T23:42:38,218   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-03-16T23:42:38,218     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2023-03-16T23:42:38,218         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-03-16T23:42:46,892   creating build/lib.linux-armv7l-cpython-39
2023-03-16T23:42:46,893   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/python.o -L/tmp/pip-wheel-2zeipkw5/linearfold_da539a873cb54c30b443dc8b0a0196ad -L/usr/lib -o build/lib.linux-armv7l-cpython-39/LinearFold.cpython-39-arm-linux-gnueabihf.so
2023-03-16T23:42:47,395   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2023-03-16T23:42:47,395     warnings.warn(
2023-03-16T23:42:47,418   installing to build/bdist.linux-armv7l/wheel
2023-03-16T23:42:47,419   running install
2023-03-16T23:42:47,444   running install_lib
2023-03-16T23:42:47,468   creating build/bdist.linux-armv7l
2023-03-16T23:42:47,469   creating build/bdist.linux-armv7l/wheel
2023-03-16T23:42:47,470   copying build/lib.linux-armv7l-cpython-39/LinearFold.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2023-03-16T23:42:47,543   running install_egg_info
2023-03-16T23:42:47,609   running egg_info
2023-03-16T23:42:47,630   writing LinearFold.egg-info/PKG-INFO
2023-03-16T23:42:47,633   writing dependency_links to LinearFold.egg-info/dependency_links.txt
2023-03-16T23:42:47,636   writing top-level names to LinearFold.egg-info/top_level.txt
2023-03-16T23:42:47,659   reading manifest file 'LinearFold.egg-info/SOURCES.txt'
2023-03-16T23:42:47,663   reading manifest template 'MANIFEST.in'
2023-03-16T23:42:47,665   warning: no files found matching 'VERSION'
2023-03-16T23:42:47,676   adding license file 'LICENSE'
2023-03-16T23:42:47,677   adding license file 'AUTHORS'
2023-03-16T23:42:47,679   writing manifest file 'LinearFold.egg-info/SOURCES.txt'
2023-03-16T23:42:47,681   Copying LinearFold.egg-info to build/bdist.linux-armv7l/wheel/LinearFold-1.1-py3.9.egg-info
2023-03-16T23:42:47,690   running install_scripts
2023-03-16T23:42:47,706   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2023-03-16T23:42:47,707   adding license file "AUTHORS" (matched pattern "AUTHORS*")
2023-03-16T23:42:47,712   creating build/bdist.linux-armv7l/wheel/LinearFold-1.1.dist-info/WHEEL
2023-03-16T23:42:47,714   creating '/tmp/pip-wheel-puua5lxl/LinearFold-1.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-03-16T23:42:48,219   adding 'LinearFold.cpython-39-arm-linux-gnueabihf.so'
2023-03-16T23:42:48,242   adding 'LinearFold-1.1.dist-info/AUTHORS'
2023-03-16T23:42:48,243   adding 'LinearFold-1.1.dist-info/LICENSE'
2023-03-16T23:42:48,245   adding 'LinearFold-1.1.dist-info/METADATA'
2023-03-16T23:42:48,246   adding 'LinearFold-1.1.dist-info/WHEEL'
2023-03-16T23:42:48,247   adding 'LinearFold-1.1.dist-info/top_level.txt'
2023-03-16T23:42:48,248   adding 'LinearFold-1.1.dist-info/RECORD'
2023-03-16T23:42:48,263   removing build/bdist.linux-armv7l/wheel
2023-03-16T23:42:48,360   Building wheel for linearfold (setup.py): finished with status 'done'
2023-03-16T23:42:48,375   Created wheel for linearfold: filename=LinearFold-1.1-cp39-cp39-linux_armv7l.whl size=957093 sha256=d6d85fbdf07d7aa7744a334136ea352609ca3fe2a951d9e09adce408a62de598
2023-03-16T23:42:48,376   Stored in directory: /tmp/pip-ephem-wheel-cache-zzzf1ldm/wheels/71/65/07/4d2751cc733eaa878997838b6eb65d85b9f833c676e30a9354
2023-03-16T23:42:48,389 Successfully built linearfold
2023-03-16T23:42:48,422 Removed build tracker: '/tmp/pip-build-tracker-vd13arsd'