2023-03-17T13:55:40,597 Created temporary directory: /tmp/pip-ephem-wheel-cache-eo4efqla
2023-03-17T13:55:40,602 Created temporary directory: /tmp/pip-build-tracker-ffdwdi06
2023-03-17T13:55:40,603 Initialized build tracking at /tmp/pip-build-tracker-ffdwdi06
2023-03-17T13:55:40,604 Created build tracker: /tmp/pip-build-tracker-ffdwdi06
2023-03-17T13:55:40,604 Entered build tracker: /tmp/pip-build-tracker-ffdwdi06
2023-03-17T13:55:40,605 Created temporary directory: /tmp/pip-wheel-2kitxsc3
2023-03-17T13:55:40,615 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-17T13:55:40,621 Created temporary directory: /tmp/pip-ephem-wheel-cache-ifscw_iu
2023-03-17T13:55:40,681 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-17T13:55:40,688 2 location(s) to search for versions of nnunetv2:
2023-03-17T13:55:40,688 * https://pypi.org/simple/nnunetv2/
2023-03-17T13:55:40,688 * https://www.piwheels.org/simple/nnunetv2/
2023-03-17T13:55:40,689 Fetching project page and analyzing links: https://pypi.org/simple/nnunetv2/
2023-03-17T13:55:40,691 Getting page https://pypi.org/simple/nnunetv2/
2023-03-17T13:55:40,694 Found index url https://pypi.org/simple
2023-03-17T13:55:40,880 Fetched page https://pypi.org/simple/nnunetv2/ as application/vnd.pypi.simple.v1+json
2023-03-17T13:55:40,882   Found link https://files.pythonhosted.org/packages/e9/76/b07d94295b8680333c267420cb8fe68780c1f0330b01f83de221e14398f8/nnunetv2-2.0.tar.gz (from https://pypi.org/simple/nnunetv2/), version: 2.0
2023-03-17T13:55:40,883 Fetching project page and analyzing links: https://www.piwheels.org/simple/nnunetv2/
2023-03-17T13:55:40,884 Getting page https://www.piwheels.org/simple/nnunetv2/
2023-03-17T13:55:40,886 Found index url https://www.piwheels.org/simple
2023-03-17T13:55:41,200 Fetched page https://www.piwheels.org/simple/nnunetv2/ as text/html
2023-03-17T13:55:41,202 Skipping link: not a file: https://www.piwheels.org/simple/nnunetv2/
2023-03-17T13:55:41,203 Skipping link: not a file: https://pypi.org/simple/nnunetv2/
2023-03-17T13:55:41,239 Given no hashes to check 1 links for project 'nnunetv2': discarding no candidates
2023-03-17T13:55:41,269 Collecting nnunetv2==2.0
2023-03-17T13:55:41,274   Created temporary directory: /tmp/pip-unpack-5xj9o5ub
2023-03-17T13:55:42,086   Downloading nnunetv2-2.0.tar.gz (148 kB)
2023-03-17T13:55:42,889   Added nnunetv2==2.0 from https://files.pythonhosted.org/packages/e9/76/b07d94295b8680333c267420cb8fe68780c1f0330b01f83de221e14398f8/nnunetv2-2.0.tar.gz to build tracker '/tmp/pip-build-tracker-ffdwdi06'
2023-03-17T13:55:42,893   Running setup.py (path:/tmp/pip-wheel-2kitxsc3/nnunetv2_f08d09921c69483196b137e567c025d6/setup.py) egg_info for package nnunetv2
2023-03-17T13:55:42,894   Created temporary directory: /tmp/pip-pip-egg-info-9b3eg7pi
2023-03-17T13:55:42,895   Preparing metadata (setup.py): started
2023-03-17T13:55:42,897   Running command python setup.py egg_info
2023-03-17T13:55:44,518   running egg_info
2023-03-17T13:55:44,520   creating /tmp/pip-pip-egg-info-9b3eg7pi/nnunetv2.egg-info
2023-03-17T13:55:44,581   writing /tmp/pip-pip-egg-info-9b3eg7pi/nnunetv2.egg-info/PKG-INFO
2023-03-17T13:55:44,586   writing dependency_links to /tmp/pip-pip-egg-info-9b3eg7pi/nnunetv2.egg-info/dependency_links.txt
2023-03-17T13:55:44,592   writing entry points to /tmp/pip-pip-egg-info-9b3eg7pi/nnunetv2.egg-info/entry_points.txt
2023-03-17T13:55:44,596   writing requirements to /tmp/pip-pip-egg-info-9b3eg7pi/nnunetv2.egg-info/requires.txt
2023-03-17T13:55:44,598   writing top-level names to /tmp/pip-pip-egg-info-9b3eg7pi/nnunetv2.egg-info/top_level.txt
2023-03-17T13:55:44,601   writing manifest file '/tmp/pip-pip-egg-info-9b3eg7pi/nnunetv2.egg-info/SOURCES.txt'
2023-03-17T13:55:44,857   reading manifest file '/tmp/pip-pip-egg-info-9b3eg7pi/nnunetv2.egg-info/SOURCES.txt'
2023-03-17T13:55:44,860   adding license file 'LICENSE'
2023-03-17T13:55:44,880   writing manifest file '/tmp/pip-pip-egg-info-9b3eg7pi/nnunetv2.egg-info/SOURCES.txt'
2023-03-17T13:55:44,882   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2023-03-17T13:55:44,883     % (opt, underscore_opt)
2023-03-17T13:55:44,999   Preparing metadata (setup.py): finished with status 'done'
2023-03-17T13:55:45,012   Source in /tmp/pip-wheel-2kitxsc3/nnunetv2_f08d09921c69483196b137e567c025d6 has version 2.0, which satisfies requirement nnunetv2==2.0 from https://files.pythonhosted.org/packages/e9/76/b07d94295b8680333c267420cb8fe68780c1f0330b01f83de221e14398f8/nnunetv2-2.0.tar.gz
2023-03-17T13:55:45,014   Removed nnunetv2==2.0 from https://files.pythonhosted.org/packages/e9/76/b07d94295b8680333c267420cb8fe68780c1f0330b01f83de221e14398f8/nnunetv2-2.0.tar.gz from build tracker '/tmp/pip-build-tracker-ffdwdi06'
2023-03-17T13:55:45,025 Created temporary directory: /tmp/pip-unpack-ewyxmqpf
2023-03-17T13:55:45,026 Building wheels for collected packages: nnunetv2
2023-03-17T13:55:45,036   Created temporary directory: /tmp/pip-wheel-5p1fx7ly
2023-03-17T13:55:45,037   Building wheel for nnunetv2 (setup.py): started
2023-03-17T13:55:45,039   Destination directory: /tmp/pip-wheel-5p1fx7ly
2023-03-17T13:55:45,039   Running command python setup.py bdist_wheel
2023-03-17T13:55:46,250   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2023-03-17T13:55:46,252     % (opt, underscore_opt)
2023-03-17T13:55:47,120   running bdist_wheel
2023-03-17T13:55:47,310   running build
2023-03-17T13:55:47,311   running build_py
2023-03-17T13:55:47,386   creating build
2023-03-17T13:55:47,387   creating build/lib
2023-03-17T13:55:47,389   creating build/lib/nnunetv2
2023-03-17T13:55:47,391   copying nnunetv2/__init__.py -> build/lib/nnunetv2
2023-03-17T13:55:47,394   copying nnunetv2/configuration.py -> build/lib/nnunetv2
2023-03-17T13:55:47,398   copying nnunetv2/paths.py -> build/lib/nnunetv2
2023-03-17T13:55:47,403   creating build/lib/nnunetv2/inference
2023-03-17T13:55:47,405   copying nnunetv2/inference/__init__.py -> build/lib/nnunetv2/inference
2023-03-17T13:55:47,408   copying nnunetv2/inference/predict_from_raw_data.py -> build/lib/nnunetv2/inference
2023-03-17T13:55:47,414   copying nnunetv2/inference/sliding_window_prediction.py -> build/lib/nnunetv2/inference
2023-03-17T13:55:47,419   copying nnunetv2/inference/export_prediction.py -> build/lib/nnunetv2/inference
2023-03-17T13:55:47,426   creating build/lib/nnunetv2/imageio
2023-03-17T13:55:47,427   copying nnunetv2/imageio/__init__.py -> build/lib/nnunetv2/imageio
2023-03-17T13:55:47,431   copying nnunetv2/imageio/tif_reader_writer.py -> build/lib/nnunetv2/imageio
2023-03-17T13:55:47,435   copying nnunetv2/imageio/nibabel_reader_writer.py -> build/lib/nnunetv2/imageio
2023-03-17T13:55:47,440   copying nnunetv2/imageio/simpleitk_reader_writer.py -> build/lib/nnunetv2/imageio
2023-03-17T13:55:47,444   copying nnunetv2/imageio/base_reader_writer.py -> build/lib/nnunetv2/imageio
2023-03-17T13:55:47,448   copying nnunetv2/imageio/reader_writer_registry.py -> build/lib/nnunetv2/imageio
2023-03-17T13:55:47,452   copying nnunetv2/imageio/natural_image_reager_writer.py -> build/lib/nnunetv2/imageio
2023-03-17T13:55:47,457   creating build/lib/nnunetv2/training
2023-03-17T13:55:47,459   copying nnunetv2/training/__init__.py -> build/lib/nnunetv2/training
2023-03-17T13:55:47,463   creating build/lib/nnunetv2/tests
2023-03-17T13:55:47,465   copying nnunetv2/tests/__init__.py -> build/lib/nnunetv2/tests
2023-03-17T13:55:47,469   creating build/lib/nnunetv2/postprocessing
2023-03-17T13:55:47,471   copying nnunetv2/postprocessing/__init__.py -> build/lib/nnunetv2/postprocessing
2023-03-17T13:55:47,474   copying nnunetv2/postprocessing/remove_connected_components.py -> build/lib/nnunetv2/postprocessing
2023-03-17T13:55:47,480   creating build/lib/nnunetv2/batch_running
2023-03-17T13:55:47,482   copying nnunetv2/batch_running/__init__.py -> build/lib/nnunetv2/batch_running
2023-03-17T13:55:47,486   copying nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py -> build/lib/nnunetv2/batch_running
2023-03-17T13:55:47,489   copying nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py -> build/lib/nnunetv2/batch_running
2023-03-17T13:55:47,493   copying nnunetv2/batch_running/collect_results_custom_Decathlon.py -> build/lib/nnunetv2/batch_running
2023-03-17T13:55:47,498   creating build/lib/nnunetv2/ensembling
2023-03-17T13:55:47,500   copying nnunetv2/ensembling/__init__.py -> build/lib/nnunetv2/ensembling
2023-03-17T13:55:47,504   copying nnunetv2/ensembling/ensemble.py -> build/lib/nnunetv2/ensembling
2023-03-17T13:55:47,510   creating build/lib/nnunetv2/experiment_planning
2023-03-17T13:55:47,511   copying nnunetv2/experiment_planning/__init__.py -> build/lib/nnunetv2/experiment_planning
2023-03-17T13:55:47,515   copying nnunetv2/experiment_planning/verify_dataset_integrity.py -> build/lib/nnunetv2/experiment_planning
2023-03-17T13:55:47,519   copying nnunetv2/experiment_planning/plan_and_preprocess_api.py -> build/lib/nnunetv2/experiment_planning
2023-03-17T13:55:47,524   copying nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py -> build/lib/nnunetv2/experiment_planning
2023-03-17T13:55:47,531   creating build/lib/nnunetv2/utilities
2023-03-17T13:55:47,533   copying nnunetv2/utilities/default_n_proc_DA.py -> build/lib/nnunetv2/utilities
2023-03-17T13:55:47,536   copying nnunetv2/utilities/__init__.py -> build/lib/nnunetv2/utilities
2023-03-17T13:55:47,539   copying nnunetv2/utilities/collate_outputs.py -> build/lib/nnunetv2/utilities
2023-03-17T13:55:47,543   copying nnunetv2/utilities/overlay_plots.py -> build/lib/nnunetv2/utilities
2023-03-17T13:55:47,548   copying nnunetv2/utilities/dataset_name_id_conversion.py -> build/lib/nnunetv2/utilities
2023-03-17T13:55:47,551   copying nnunetv2/utilities/utils.py -> build/lib/nnunetv2/utilities
2023-03-17T13:55:47,555   copying nnunetv2/utilities/get_network_from_plans.py -> build/lib/nnunetv2/utilities
2023-03-17T13:55:47,559   copying nnunetv2/utilities/json_export.py -> build/lib/nnunetv2/utilities
2023-03-17T13:55:47,562   copying nnunetv2/utilities/find_class_by_name.py -> build/lib/nnunetv2/utilities
2023-03-17T13:55:47,566   copying nnunetv2/utilities/tensor_utilities.py -> build/lib/nnunetv2/utilities
2023-03-17T13:55:47,569   copying nnunetv2/utilities/network_initialization.py -> build/lib/nnunetv2/utilities
2023-03-17T13:55:47,573   copying nnunetv2/utilities/helpers.py -> build/lib/nnunetv2/utilities
2023-03-17T13:55:47,576   copying nnunetv2/utilities/ddp_allgather.py -> build/lib/nnunetv2/utilities
2023-03-17T13:55:47,580   copying nnunetv2/utilities/file_path_utilities.py -> build/lib/nnunetv2/utilities
2023-03-17T13:55:47,585   creating build/lib/nnunetv2/run
2023-03-17T13:55:47,587   copying nnunetv2/run/run_training.py -> build/lib/nnunetv2/run
2023-03-17T13:55:47,592   copying nnunetv2/run/__init__.py -> build/lib/nnunetv2/run
2023-03-17T13:55:47,595   copying nnunetv2/run/load_pretrained_weights.py -> build/lib/nnunetv2/run
2023-03-17T13:55:47,601   creating build/lib/nnunetv2/dataset_conversion
2023-03-17T13:55:47,603   copying nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py -> build/lib/nnunetv2/dataset_conversion
2023-03-17T13:55:47,607   copying nnunetv2/dataset_conversion/__init__.py -> build/lib/nnunetv2/dataset_conversion
2023-03-17T13:55:47,610   copying nnunetv2/dataset_conversion/convert_MSD_dataset.py -> build/lib/nnunetv2/dataset_conversion
2023-03-17T13:55:47,614   copying nnunetv2/dataset_conversion/Dataset137_BraTS21.py -> build/lib/nnunetv2/dataset_conversion
2023-03-17T13:55:47,618   copying nnunetv2/dataset_conversion/generate_dataset_json.py -> build/lib/nnunetv2/dataset_conversion
2023-03-17T13:55:47,621   copying nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py -> build/lib/nnunetv2/dataset_conversion
2023-03-17T13:55:47,626   copying nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py -> build/lib/nnunetv2/dataset_conversion
2023-03-17T13:55:47,629   copying nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py -> build/lib/nnunetv2/dataset_conversion
2023-03-17T13:55:47,633   copying nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py -> build/lib/nnunetv2/dataset_conversion
2023-03-17T13:55:47,639   creating build/lib/nnunetv2/evaluation
2023-03-17T13:55:47,640   copying nnunetv2/evaluation/__init__.py -> build/lib/nnunetv2/evaluation
2023-03-17T13:55:47,643   copying nnunetv2/evaluation/find_best_configuration.py -> build/lib/nnunetv2/evaluation
2023-03-17T13:55:47,648   copying nnunetv2/evaluation/evaluate_predictions.py -> build/lib/nnunetv2/evaluation
2023-03-17T13:55:47,653   copying nnunetv2/evaluation/accumulate_cv_results.py -> build/lib/nnunetv2/evaluation
2023-03-17T13:55:47,659   creating build/lib/nnunetv2/model_sharing
2023-03-17T13:55:47,660   copying nnunetv2/model_sharing/__init__.py -> build/lib/nnunetv2/model_sharing
2023-03-17T13:55:47,664   copying nnunetv2/model_sharing/entry_points.py -> build/lib/nnunetv2/model_sharing
2023-03-17T13:55:47,668   copying nnunetv2/model_sharing/model_import.py -> build/lib/nnunetv2/model_sharing
2023-03-17T13:55:47,671   copying nnunetv2/model_sharing/model_export.py -> build/lib/nnunetv2/model_sharing
2023-03-17T13:55:47,676   copying nnunetv2/model_sharing/model_download.py -> build/lib/nnunetv2/model_sharing
2023-03-17T13:55:47,681   creating build/lib/nnunetv2/preprocessing
2023-03-17T13:55:47,682   copying nnunetv2/preprocessing/__init__.py -> build/lib/nnunetv2/preprocessing
2023-03-17T13:55:47,687   creating build/lib/nnunetv2/training/dataloading
2023-03-17T13:55:47,689   copying nnunetv2/training/dataloading/__init__.py -> build/lib/nnunetv2/training/dataloading
2023-03-17T13:55:47,692   copying nnunetv2/training/dataloading/nnunet_dataset.py -> build/lib/nnunetv2/training/dataloading
2023-03-17T13:55:47,697   copying nnunetv2/training/dataloading/utils.py -> build/lib/nnunetv2/training/dataloading
2023-03-17T13:55:47,700   copying nnunetv2/training/dataloading/base_data_loader.py -> build/lib/nnunetv2/training/dataloading
2023-03-17T13:55:47,705   copying nnunetv2/training/dataloading/data_loader_3d.py -> build/lib/nnunetv2/training/dataloading
2023-03-17T13:55:47,709   copying nnunetv2/training/dataloading/data_loader_2d.py -> build/lib/nnunetv2/training/dataloading
2023-03-17T13:55:47,715   creating build/lib/nnunetv2/training/logging
2023-03-17T13:55:47,716   copying nnunetv2/training/logging/__init__.py -> build/lib/nnunetv2/training/logging
2023-03-17T13:55:47,719   copying nnunetv2/training/logging/nnunet_logger.py -> build/lib/nnunetv2/training/logging
2023-03-17T13:55:47,725   creating build/lib/nnunetv2/training/lr_scheduler
2023-03-17T13:55:47,727   copying nnunetv2/training/lr_scheduler/__init__.py -> build/lib/nnunetv2/training/lr_scheduler
2023-03-17T13:55:47,730   copying nnunetv2/training/lr_scheduler/polylr.py -> build/lib/nnunetv2/training/lr_scheduler
2023-03-17T13:55:47,735   creating build/lib/nnunetv2/training/loss
2023-03-17T13:55:47,737   copying nnunetv2/training/loss/__init__.py -> build/lib/nnunetv2/training/loss
2023-03-17T13:55:47,740   copying nnunetv2/training/loss/deep_supervision.py -> build/lib/nnunetv2/training/loss
2023-03-17T13:55:47,744   copying nnunetv2/training/loss/compound_losses.py -> build/lib/nnunetv2/training/loss
2023-03-17T13:55:47,748   copying nnunetv2/training/loss/robust_ce_loss.py -> build/lib/nnunetv2/training/loss
2023-03-17T13:55:47,752   copying nnunetv2/training/loss/dice.py -> build/lib/nnunetv2/training/loss
2023-03-17T13:55:47,757   creating build/lib/nnunetv2/training/nnUNetTrainer
2023-03-17T13:55:47,759   copying nnunetv2/training/nnUNetTrainer/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer
2023-03-17T13:55:47,762   copying nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py -> build/lib/nnunetv2/training/nnUNetTrainer
2023-03-17T13:55:47,772   creating build/lib/nnunetv2/training/data_augmentation
2023-03-17T13:55:47,773   copying nnunetv2/training/data_augmentation/__init__.py -> build/lib/nnunetv2/training/data_augmentation
2023-03-17T13:55:47,776   copying nnunetv2/training/data_augmentation/compute_initial_patch_size.py -> build/lib/nnunetv2/training/data_augmentation
2023-03-17T13:55:47,781   creating build/lib/nnunetv2/training/nnUNetTrainer/variants
2023-03-17T13:55:47,783   copying nnunetv2/training/nnUNetTrainer/variants/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants
2023-03-17T13:55:47,787   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length
2023-03-17T13:55:47,789   copying nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length
2023-03-17T13:55:47,793   copying nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length
2023-03-17T13:55:47,797   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-17T13:55:47,799   copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-17T13:55:47,802   copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-17T13:55:47,806   copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-17T13:55:47,811   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-17T13:55:47,813   copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-17T13:55:47,816   copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-17T13:55:47,820   copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-17T13:55:47,825   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-17T13:55:47,827   copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-17T13:55:47,831   copying nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-17T13:55:47,834   copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-17T13:55:47,838   copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-17T13:55:47,843   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-17T13:55:47,845   copying nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-17T13:55:47,848   copying nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-17T13:55:47,852   copying nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-17T13:55:47,857   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2023-03-17T13:55:47,858   copying nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2023-03-17T13:55:47,861   copying nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2023-03-17T13:55:47,867   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-17T13:55:47,869   copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-17T13:55:47,873   copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-17T13:55:47,876   copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-17T13:55:47,879   copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-17T13:55:47,885   copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-17T13:55:47,890   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling
2023-03-17T13:55:47,892   copying nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling
2023-03-17T13:55:47,895   copying nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling
2023-03-17T13:55:47,901   creating build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:47,903   copying nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:47,907   copying nnunetv2/training/data_augmentation/custom_transforms/__init__.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:47,910   copying nnunetv2/training/data_augmentation/custom_transforms/masking.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:47,914   copying nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:47,918   copying nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:47,922   copying nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:47,925   copying nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:47,929   copying nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:47,935   creating build/lib/nnunetv2/tests/integration_tests
2023-03-17T13:55:47,936   copying nnunetv2/tests/integration_tests/__init__.py -> build/lib/nnunetv2/tests/integration_tests
2023-03-17T13:55:47,939   copying nnunetv2/tests/integration_tests/cleanup_integration_test.py -> build/lib/nnunetv2/tests/integration_tests
2023-03-17T13:55:47,943   copying nnunetv2/tests/integration_tests/add_lowres_and_cascade.py -> build/lib/nnunetv2/tests/integration_tests
2023-03-17T13:55:47,947   copying nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py -> build/lib/nnunetv2/tests/integration_tests
2023-03-17T13:55:47,952   creating build/lib/nnunetv2/batch_running/benchmarking
2023-03-17T13:55:47,953   copying nnunetv2/batch_running/benchmarking/__init__.py -> build/lib/nnunetv2/batch_running/benchmarking
2023-03-17T13:55:47,973   copying nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py -> build/lib/nnunetv2/batch_running/benchmarking
2023-03-17T13:55:47,977   copying nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py -> build/lib/nnunetv2/batch_running/benchmarking
2023-03-17T13:55:47,982   creating build/lib/nnunetv2/batch_running/release_trainings
2023-03-17T13:55:47,984   copying nnunetv2/batch_running/release_trainings/__init__.py -> build/lib/nnunetv2/batch_running/release_trainings
2023-03-17T13:55:47,988   creating build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-17T13:55:47,990   copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-17T13:55:47,993   copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-17T13:55:47,998   copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-17T13:55:48,002   creating build/lib/nnunetv2/experiment_planning/dataset_fingerprint
2023-03-17T13:55:48,004   copying nnunetv2/experiment_planning/dataset_fingerprint/__init__.py -> build/lib/nnunetv2/experiment_planning/dataset_fingerprint
2023-03-17T13:55:48,007   copying nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py -> build/lib/nnunetv2/experiment_planning/dataset_fingerprint
2023-03-17T13:55:48,013   creating build/lib/nnunetv2/experiment_planning/plans_for_pretraining
2023-03-17T13:55:48,015   copying nnunetv2/experiment_planning/plans_for_pretraining/__init__.py -> build/lib/nnunetv2/experiment_planning/plans_for_pretraining
2023-03-17T13:55:48,018   copying nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py -> build/lib/nnunetv2/experiment_planning/plans_for_pretraining
2023-03-17T13:55:48,023   creating build/lib/nnunetv2/experiment_planning/experiment_planners
2023-03-17T13:55:48,024   copying nnunetv2/experiment_planning/experiment_planners/__init__.py -> build/lib/nnunetv2/experiment_planning/experiment_planners
2023-03-17T13:55:48,028   copying nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py -> build/lib/nnunetv2/experiment_planning/experiment_planners
2023-03-17T13:55:48,031   copying nnunetv2/experiment_planning/experiment_planners/network_topology.py -> build/lib/nnunetv2/experiment_planning/experiment_planners
2023-03-17T13:55:48,035   copying nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py -> build/lib/nnunetv2/experiment_planning/experiment_planners
2023-03-17T13:55:48,042   creating build/lib/nnunetv2/utilities/label_handling
2023-03-17T13:55:48,043   copying nnunetv2/utilities/label_handling/__init__.py -> build/lib/nnunetv2/utilities/label_handling
2023-03-17T13:55:48,047   copying nnunetv2/utilities/label_handling/label_handling.py -> build/lib/nnunetv2/utilities/label_handling
2023-03-17T13:55:48,052   creating build/lib/nnunetv2/utilities/plans_handling
2023-03-17T13:55:48,054   copying nnunetv2/utilities/plans_handling/__init__.py -> build/lib/nnunetv2/utilities/plans_handling
2023-03-17T13:55:48,057   copying nnunetv2/utilities/plans_handling/plans_handler.py -> build/lib/nnunetv2/utilities/plans_handling
2023-03-17T13:55:48,063   creating build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-17T13:55:48,066   copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-17T13:55:48,069   copying nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-17T13:55:48,072   copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-17T13:55:48,076   copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-17T13:55:48,079   copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-17T13:55:48,085   creating build/lib/nnunetv2/preprocessing/preprocessors
2023-03-17T13:55:48,086   copying nnunetv2/preprocessing/preprocessors/__init__.py -> build/lib/nnunetv2/preprocessing/preprocessors
2023-03-17T13:55:48,089   copying nnunetv2/preprocessing/preprocessors/default_preprocessor.py -> build/lib/nnunetv2/preprocessing/preprocessors
2023-03-17T13:55:48,095   creating build/lib/nnunetv2/preprocessing/resampling
2023-03-17T13:55:48,097   copying nnunetv2/preprocessing/resampling/__init__.py -> build/lib/nnunetv2/preprocessing/resampling
2023-03-17T13:55:48,100   copying nnunetv2/preprocessing/resampling/utils.py -> build/lib/nnunetv2/preprocessing/resampling
2023-03-17T13:55:48,104   copying nnunetv2/preprocessing/resampling/default_resampling.py -> build/lib/nnunetv2/preprocessing/resampling
2023-03-17T13:55:48,110   creating build/lib/nnunetv2/preprocessing/normalization
2023-03-17T13:55:48,111   copying nnunetv2/preprocessing/normalization/__init__.py -> build/lib/nnunetv2/preprocessing/normalization
2023-03-17T13:55:48,115   copying nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py -> build/lib/nnunetv2/preprocessing/normalization
2023-03-17T13:55:48,118   copying nnunetv2/preprocessing/normalization/default_normalization_schemes.py -> build/lib/nnunetv2/preprocessing/normalization
2023-03-17T13:55:48,123   creating build/lib/nnunetv2/preprocessing/cropping
2023-03-17T13:55:48,125   copying nnunetv2/preprocessing/cropping/cropping.py -> build/lib/nnunetv2/preprocessing/cropping
2023-03-17T13:55:48,129   copying nnunetv2/preprocessing/cropping/__init__.py -> build/lib/nnunetv2/preprocessing/cropping
2023-03-17T13:55:48,257   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2023-03-17T13:55:48,257     setuptools.SetuptoolsDeprecationWarning,
2023-03-17T13:55:48,318   installing to build/bdist.linux-armv7l/wheel
2023-03-17T13:55:48,319   running install
2023-03-17T13:55:48,379   running install_lib
2023-03-17T13:55:48,445   creating build/bdist.linux-armv7l
2023-03-17T13:55:48,446   creating build/bdist.linux-armv7l/wheel
2023-03-17T13:55:48,449   creating build/bdist.linux-armv7l/wheel/nnunetv2
2023-03-17T13:55:48,452   creating build/bdist.linux-armv7l/wheel/nnunetv2/inference
2023-03-17T13:55:48,454   copying build/lib/nnunetv2/inference/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference
2023-03-17T13:55:48,457   copying build/lib/nnunetv2/inference/predict_from_raw_data.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference
2023-03-17T13:55:48,463   copying build/lib/nnunetv2/inference/sliding_window_prediction.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference
2023-03-17T13:55:48,468   copying build/lib/nnunetv2/inference/export_prediction.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference
2023-03-17T13:55:48,473   creating build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-17T13:55:48,474   copying build/lib/nnunetv2/imageio/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-17T13:55:48,478   copying build/lib/nnunetv2/imageio/tif_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-17T13:55:48,482   copying build/lib/nnunetv2/imageio/nibabel_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-17T13:55:48,486   copying build/lib/nnunetv2/imageio/simpleitk_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-17T13:55:48,490   copying build/lib/nnunetv2/imageio/base_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-17T13:55:48,494   copying build/lib/nnunetv2/imageio/reader_writer_registry.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-17T13:55:48,498   copying build/lib/nnunetv2/imageio/natural_image_reager_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-17T13:55:48,501   copying build/lib/nnunetv2/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2
2023-03-17T13:55:48,505   creating build/bdist.linux-armv7l/wheel/nnunetv2/training
2023-03-17T13:55:48,508   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2023-03-17T13:55:48,510   copying build/lib/nnunetv2/training/dataloading/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2023-03-17T13:55:48,513   copying build/lib/nnunetv2/training/dataloading/nnunet_dataset.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2023-03-17T13:55:48,517   copying build/lib/nnunetv2/training/dataloading/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2023-03-17T13:55:48,521   copying build/lib/nnunetv2/training/dataloading/base_data_loader.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2023-03-17T13:55:48,525   copying build/lib/nnunetv2/training/dataloading/data_loader_3d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2023-03-17T13:55:48,528   copying build/lib/nnunetv2/training/dataloading/data_loader_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2023-03-17T13:55:48,532   copying build/lib/nnunetv2/training/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training
2023-03-17T13:55:48,536   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/logging
2023-03-17T13:55:48,538   copying build/lib/nnunetv2/training/logging/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/logging
2023-03-17T13:55:48,541   copying build/lib/nnunetv2/training/logging/nnunet_logger.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/logging
2023-03-17T13:55:48,546   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler
2023-03-17T13:55:48,547   copying build/lib/nnunetv2/training/lr_scheduler/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler
2023-03-17T13:55:48,551   copying build/lib/nnunetv2/training/lr_scheduler/polylr.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler
2023-03-17T13:55:48,555   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2023-03-17T13:55:48,557   copying build/lib/nnunetv2/training/loss/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2023-03-17T13:55:48,560   copying build/lib/nnunetv2/training/loss/deep_supervision.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2023-03-17T13:55:48,563   copying build/lib/nnunetv2/training/loss/compound_losses.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2023-03-17T13:55:48,567   copying build/lib/nnunetv2/training/loss/robust_ce_loss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2023-03-17T13:55:48,570   copying build/lib/nnunetv2/training/loss/dice.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2023-03-17T13:55:48,575   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer
2023-03-17T13:55:48,577   copying build/lib/nnunetv2/training/nnUNetTrainer/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer
2023-03-17T13:55:48,580   copying build/lib/nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer
2023-03-17T13:55:48,588   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants
2023-03-17T13:55:48,591   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length
2023-03-17T13:55:48,592   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length
2023-03-17T13:55:48,596   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length
2023-03-17T13:55:48,600   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants
2023-03-17T13:55:48,603   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-17T13:55:48,605   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-17T13:55:48,608   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-17T13:55:48,612   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-17T13:55:48,617   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-17T13:55:48,619   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-17T13:55:48,622   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-17T13:55:48,626   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-17T13:55:48,631   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-17T13:55:48,633   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-17T13:55:48,636   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-17T13:55:48,639   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-17T13:55:48,643   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-17T13:55:48,648   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-17T13:55:48,650   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-17T13:55:48,653   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-17T13:55:48,657   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-17T13:55:48,661   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2023-03-17T13:55:48,663   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2023-03-17T13:55:48,666   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2023-03-17T13:55:48,671   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-17T13:55:48,673   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-17T13:55:48,677   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-17T13:55:48,680   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-17T13:55:48,684   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-17T13:55:48,688   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-17T13:55:48,693   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling
2023-03-17T13:55:48,695   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling
2023-03-17T13:55:48,698   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling
2023-03-17T13:55:48,703   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation
2023-03-17T13:55:48,705   copying build/lib/nnunetv2/training/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation
2023-03-17T13:55:48,710   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:48,711   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:48,716   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:48,719   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/masking.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:48,723   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:48,727   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:48,731   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:48,735   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:48,739   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-17T13:55:48,742   copying build/lib/nnunetv2/training/data_augmentation/compute_initial_patch_size.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation
2023-03-17T13:55:48,747   creating build/bdist.linux-armv7l/wheel/nnunetv2/tests
2023-03-17T13:55:48,748   copying build/lib/nnunetv2/tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests
2023-03-17T13:55:48,752   creating build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests
2023-03-17T13:55:48,754   copying build/lib/nnunetv2/tests/integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests
2023-03-17T13:55:48,757   copying build/lib/nnunetv2/tests/integration_tests/cleanup_integration_test.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests
2023-03-17T13:55:48,761   copying build/lib/nnunetv2/tests/integration_tests/add_lowres_and_cascade.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests
2023-03-17T13:55:48,764   copying build/lib/nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests
2023-03-17T13:55:48,769   creating build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing
2023-03-17T13:55:48,771   copying build/lib/nnunetv2/postprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing
2023-03-17T13:55:48,774   copying build/lib/nnunetv2/postprocessing/remove_connected_components.py -> build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing
2023-03-17T13:55:48,780   creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running
2023-03-17T13:55:48,783   copying build/lib/nnunetv2/batch_running/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running
2023-03-17T13:55:48,787   copying build/lib/nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running
2023-03-17T13:55:48,790   copying build/lib/nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running
2023-03-17T13:55:48,795   creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking
2023-03-17T13:55:48,796   copying build/lib/nnunetv2/batch_running/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking
2023-03-17T13:55:48,800   copying build/lib/nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking
2023-03-17T13:55:48,803   copying build/lib/nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking
2023-03-17T13:55:48,807   copying build/lib/nnunetv2/batch_running/collect_results_custom_Decathlon.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running
2023-03-17T13:55:48,812   creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings
2023-03-17T13:55:48,813   copying build/lib/nnunetv2/batch_running/release_trainings/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings
2023-03-17T13:55:48,818   creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-17T13:55:48,820   copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-17T13:55:48,824   copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-17T13:55:48,829   copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-17T13:55:48,834   creating build/bdist.linux-armv7l/wheel/nnunetv2/ensembling
2023-03-17T13:55:48,837   copying build/lib/nnunetv2/ensembling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/ensembling
2023-03-17T13:55:48,841   copying build/lib/nnunetv2/ensembling/ensemble.py -> build/bdist.linux-armv7l/wheel/nnunetv2/ensembling
2023-03-17T13:55:48,847   creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning
2023-03-17T13:55:48,849   copying build/lib/nnunetv2/experiment_planning/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning
2023-03-17T13:55:48,854   creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint
2023-03-17T13:55:48,857   copying build/lib/nnunetv2/experiment_planning/dataset_fingerprint/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint
2023-03-17T13:55:48,861   copying build/lib/nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint
2023-03-17T13:55:48,866   copying build/lib/nnunetv2/experiment_planning/verify_dataset_integrity.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning
2023-03-17T13:55:48,872   creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining
2023-03-17T13:55:48,874   copying build/lib/nnunetv2/experiment_planning/plans_for_pretraining/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining
2023-03-17T13:55:48,878   copying build/lib/nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining
2023-03-17T13:55:48,883   creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners
2023-03-17T13:55:48,886   copying build/lib/nnunetv2/experiment_planning/experiment_planners/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners
2023-03-17T13:55:48,889   copying build/lib/nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners
2023-03-17T13:55:48,892   copying build/lib/nnunetv2/experiment_planning/experiment_planners/network_topology.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners
2023-03-17T13:55:48,896   copying build/lib/nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners
2023-03-17T13:55:48,901   copying build/lib/nnunetv2/experiment_planning/plan_and_preprocess_api.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning
2023-03-17T13:55:48,905   copying build/lib/nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning
2023-03-17T13:55:48,911   creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-17T13:55:48,914   creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling
2023-03-17T13:55:48,916   copying build/lib/nnunetv2/utilities/label_handling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling
2023-03-17T13:55:48,919   copying build/lib/nnunetv2/utilities/label_handling/label_handling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling
2023-03-17T13:55:48,923   copying build/lib/nnunetv2/utilities/default_n_proc_DA.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-17T13:55:48,927   copying build/lib/nnunetv2/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-17T13:55:48,930   copying build/lib/nnunetv2/utilities/collate_outputs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-17T13:55:48,933   copying build/lib/nnunetv2/utilities/overlay_plots.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-17T13:55:48,938   copying build/lib/nnunetv2/utilities/dataset_name_id_conversion.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-17T13:55:48,941   copying build/lib/nnunetv2/utilities/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-17T13:55:48,945   copying build/lib/nnunetv2/utilities/get_network_from_plans.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-17T13:55:48,949   copying build/lib/nnunetv2/utilities/json_export.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-17T13:55:48,952   copying build/lib/nnunetv2/utilities/find_class_by_name.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-17T13:55:48,956   copying build/lib/nnunetv2/utilities/tensor_utilities.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-17T13:55:48,959   copying build/lib/nnunetv2/utilities/network_initialization.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-17T13:55:48,962   copying build/lib/nnunetv2/utilities/helpers.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-17T13:55:48,966   copying build/lib/nnunetv2/utilities/ddp_allgather.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-17T13:55:48,969   copying build/lib/nnunetv2/utilities/file_path_utilities.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-17T13:55:48,974   creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling
2023-03-17T13:55:48,976   copying build/lib/nnunetv2/utilities/plans_handling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling
2023-03-17T13:55:48,979   copying build/lib/nnunetv2/utilities/plans_handling/plans_handler.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling
2023-03-17T13:55:48,984   creating build/bdist.linux-armv7l/wheel/nnunetv2/run
2023-03-17T13:55:48,986   copying build/lib/nnunetv2/run/run_training.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run
2023-03-17T13:55:48,991   copying build/lib/nnunetv2/run/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run
2023-03-17T13:55:48,994   copying build/lib/nnunetv2/run/load_pretrained_weights.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run
2023-03-17T13:55:48,998   creating build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-17T13:55:49,000   copying build/lib/nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-17T13:55:49,004   copying build/lib/nnunetv2/dataset_conversion/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-17T13:55:49,007   copying build/lib/nnunetv2/dataset_conversion/convert_MSD_dataset.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-17T13:55:49,011   copying build/lib/nnunetv2/dataset_conversion/Dataset137_BraTS21.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-17T13:55:49,015   creating build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-17T13:55:49,017   copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-17T13:55:49,021   copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-17T13:55:49,023   copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-17T13:55:49,027   copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-17T13:55:49,030   copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-17T13:55:49,034   copying build/lib/nnunetv2/dataset_conversion/generate_dataset_json.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-17T13:55:49,038   copying build/lib/nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-17T13:55:49,041   copying build/lib/nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-17T13:55:49,045   copying build/lib/nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-17T13:55:49,048   copying build/lib/nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-17T13:55:49,053   creating build/bdist.linux-armv7l/wheel/nnunetv2/evaluation
2023-03-17T13:55:49,055   copying build/lib/nnunetv2/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation
2023-03-17T13:55:49,058   copying build/lib/nnunetv2/evaluation/find_best_configuration.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation
2023-03-17T13:55:49,062   copying build/lib/nnunetv2/evaluation/evaluate_predictions.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation
2023-03-17T13:55:49,067   copying build/lib/nnunetv2/evaluation/accumulate_cv_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation
2023-03-17T13:55:49,071   creating build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2023-03-17T13:55:49,073   copying build/lib/nnunetv2/model_sharing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2023-03-17T13:55:49,076   copying build/lib/nnunetv2/model_sharing/entry_points.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2023-03-17T13:55:49,080   copying build/lib/nnunetv2/model_sharing/model_import.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2023-03-17T13:55:49,083   copying build/lib/nnunetv2/model_sharing/model_export.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2023-03-17T13:55:49,088   copying build/lib/nnunetv2/model_sharing/model_download.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2023-03-17T13:55:49,091   copying build/lib/nnunetv2/configuration.py -> build/bdist.linux-armv7l/wheel/nnunetv2
2023-03-17T13:55:49,094   copying build/lib/nnunetv2/paths.py -> build/bdist.linux-armv7l/wheel/nnunetv2
2023-03-17T13:55:49,099   creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing
2023-03-17T13:55:49,100   copying build/lib/nnunetv2/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing
2023-03-17T13:55:49,105   creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors
2023-03-17T13:55:49,106   copying build/lib/nnunetv2/preprocessing/preprocessors/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors
2023-03-17T13:55:49,109   copying build/lib/nnunetv2/preprocessing/preprocessors/default_preprocessor.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors
2023-03-17T13:55:49,115   creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling
2023-03-17T13:55:49,117   copying build/lib/nnunetv2/preprocessing/resampling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling
2023-03-17T13:55:49,120   copying build/lib/nnunetv2/preprocessing/resampling/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling
2023-03-17T13:55:49,123   copying build/lib/nnunetv2/preprocessing/resampling/default_resampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling
2023-03-17T13:55:49,129   creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization
2023-03-17T13:55:49,131   copying build/lib/nnunetv2/preprocessing/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization
2023-03-17T13:55:49,134   copying build/lib/nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization
2023-03-17T13:55:49,137   copying build/lib/nnunetv2/preprocessing/normalization/default_normalization_schemes.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization
2023-03-17T13:55:49,142   creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping
2023-03-17T13:55:49,143   copying build/lib/nnunetv2/preprocessing/cropping/cropping.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping
2023-03-17T13:55:49,147   copying build/lib/nnunetv2/preprocessing/cropping/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping
2023-03-17T13:55:49,150   running install_egg_info
2023-03-17T13:55:49,303   running egg_info
2023-03-17T13:55:49,361   writing nnunetv2.egg-info/PKG-INFO
2023-03-17T13:55:49,364   writing dependency_links to nnunetv2.egg-info/dependency_links.txt
2023-03-17T13:55:49,370   writing entry points to nnunetv2.egg-info/entry_points.txt
2023-03-17T13:55:49,373   writing requirements to nnunetv2.egg-info/requires.txt
2023-03-17T13:55:49,376   writing top-level names to nnunetv2.egg-info/top_level.txt
2023-03-17T13:55:49,497   reading manifest file 'nnunetv2.egg-info/SOURCES.txt'
2023-03-17T13:55:49,510   adding license file 'LICENSE'
2023-03-17T13:55:49,536   writing manifest file 'nnunetv2.egg-info/SOURCES.txt'
2023-03-17T13:55:49,540   Copying nnunetv2.egg-info to build/bdist.linux-armv7l/wheel/nnunetv2-2.0-py3.7.egg-info
2023-03-17T13:55:49,562   running install_scripts
2023-03-17T13:55:49,610   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2023-03-17T13:55:49,619   creating build/bdist.linux-armv7l/wheel/nnunetv2-2.0.dist-info/WHEEL
2023-03-17T13:55:49,624   creating '/tmp/pip-wheel-5p1fx7ly/nnunetv2-2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-03-17T13:55:49,629   adding 'nnunetv2/__init__.py'
2023-03-17T13:55:49,632   adding 'nnunetv2/configuration.py'
2023-03-17T13:55:49,634   adding 'nnunetv2/paths.py'
2023-03-17T13:55:49,638   adding 'nnunetv2/batch_running/__init__.py'
2023-03-17T13:55:49,641   adding 'nnunetv2/batch_running/collect_results_custom_Decathlon.py'
2023-03-17T13:55:49,644   adding 'nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py'
2023-03-17T13:55:49,647   adding 'nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py'
2023-03-17T13:55:49,650   adding 'nnunetv2/batch_running/benchmarking/__init__.py'
2023-03-17T13:55:49,653   adding 'nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py'
2023-03-17T13:55:49,656   adding 'nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py'
2023-03-17T13:55:49,659   adding 'nnunetv2/batch_running/release_trainings/__init__.py'
2023-03-17T13:55:49,662   adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py'
2023-03-17T13:55:49,666   adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py'
2023-03-17T13:55:49,669   adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py'
2023-03-17T13:55:49,673   adding 'nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py'
2023-03-17T13:55:49,676   adding 'nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py'
2023-03-17T13:55:49,679   adding 'nnunetv2/dataset_conversion/Dataset137_BraTS21.py'
2023-03-17T13:55:49,682   adding 'nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py'
2023-03-17T13:55:49,685   adding 'nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py'
2023-03-17T13:55:49,687   adding 'nnunetv2/dataset_conversion/__init__.py'
2023-03-17T13:55:49,691   adding 'nnunetv2/dataset_conversion/convert_MSD_dataset.py'
2023-03-17T13:55:49,693   adding 'nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py'
2023-03-17T13:55:49,697   adding 'nnunetv2/dataset_conversion/generate_dataset_json.py'
2023-03-17T13:55:49,701   adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py'
2023-03-17T13:55:49,703   adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py'
2023-03-17T13:55:49,706   adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py'
2023-03-17T13:55:49,709   adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py'
2023-03-17T13:55:49,711   adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py'
2023-03-17T13:55:49,714   adding 'nnunetv2/ensembling/__init__.py'
2023-03-17T13:55:49,718   adding 'nnunetv2/ensembling/ensemble.py'
2023-03-17T13:55:49,722   adding 'nnunetv2/evaluation/__init__.py'
2023-03-17T13:55:49,725   adding 'nnunetv2/evaluation/accumulate_cv_results.py'
2023-03-17T13:55:49,729   adding 'nnunetv2/evaluation/evaluate_predictions.py'
2023-03-17T13:55:49,735   adding 'nnunetv2/evaluation/find_best_configuration.py'
2023-03-17T13:55:49,739   adding 'nnunetv2/experiment_planning/__init__.py'
2023-03-17T13:55:49,742   adding 'nnunetv2/experiment_planning/plan_and_preprocess_api.py'
2023-03-17T13:55:49,746   adding 'nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py'
2023-03-17T13:55:49,751   adding 'nnunetv2/experiment_planning/verify_dataset_integrity.py'
2023-03-17T13:55:49,754   adding 'nnunetv2/experiment_planning/dataset_fingerprint/__init__.py'
2023-03-17T13:55:49,758   adding 'nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py'
2023-03-17T13:55:49,762   adding 'nnunetv2/experiment_planning/experiment_planners/__init__.py'
2023-03-17T13:55:49,770   adding 'nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py'
2023-03-17T13:55:49,774   adding 'nnunetv2/experiment_planning/experiment_planners/network_topology.py'
2023-03-17T13:55:49,777   adding 'nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py'
2023-03-17T13:55:49,780   adding 'nnunetv2/experiment_planning/plans_for_pretraining/__init__.py'
2023-03-17T13:55:49,783   adding 'nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py'
2023-03-17T13:55:49,787   adding 'nnunetv2/imageio/__init__.py'
2023-03-17T13:55:49,790   adding 'nnunetv2/imageio/base_reader_writer.py'
2023-03-17T13:55:49,793   adding 'nnunetv2/imageio/natural_image_reager_writer.py'
2023-03-17T13:55:49,797   adding 'nnunetv2/imageio/nibabel_reader_writer.py'
2023-03-17T13:55:49,800   adding 'nnunetv2/imageio/reader_writer_registry.py'
2023-03-17T13:55:49,803   adding 'nnunetv2/imageio/simpleitk_reader_writer.py'
2023-03-17T13:55:49,806   adding 'nnunetv2/imageio/tif_reader_writer.py'
2023-03-17T13:55:49,810   adding 'nnunetv2/inference/__init__.py'
2023-03-17T13:55:49,813   adding 'nnunetv2/inference/export_prediction.py'
2023-03-17T13:55:49,821   adding 'nnunetv2/inference/predict_from_raw_data.py'
2023-03-17T13:55:49,825   adding 'nnunetv2/inference/sliding_window_prediction.py'
2023-03-17T13:55:49,829   adding 'nnunetv2/model_sharing/__init__.py'
2023-03-17T13:55:49,832   adding 'nnunetv2/model_sharing/entry_points.py'
2023-03-17T13:55:49,835   adding 'nnunetv2/model_sharing/model_download.py'
2023-03-17T13:55:49,838   adding 'nnunetv2/model_sharing/model_export.py'
2023-03-17T13:55:49,840   adding 'nnunetv2/model_sharing/model_import.py'
2023-03-17T13:55:49,844   adding 'nnunetv2/postprocessing/__init__.py'
2023-03-17T13:55:49,849   adding 'nnunetv2/postprocessing/remove_connected_components.py'
2023-03-17T13:55:49,853   adding 'nnunetv2/preprocessing/__init__.py'
2023-03-17T13:55:49,856   adding 'nnunetv2/preprocessing/cropping/__init__.py'
2023-03-17T13:55:49,859   adding 'nnunetv2/preprocessing/cropping/cropping.py'
2023-03-17T13:55:49,862   adding 'nnunetv2/preprocessing/normalization/__init__.py'
2023-03-17T13:55:49,865   adding 'nnunetv2/preprocessing/normalization/default_normalization_schemes.py'
2023-03-17T13:55:49,867   adding 'nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py'
2023-03-17T13:55:49,871   adding 'nnunetv2/preprocessing/preprocessors/__init__.py'
2023-03-17T13:55:49,876   adding 'nnunetv2/preprocessing/preprocessors/default_preprocessor.py'
2023-03-17T13:55:49,879   adding 'nnunetv2/preprocessing/resampling/__init__.py'
2023-03-17T13:55:49,883   adding 'nnunetv2/preprocessing/resampling/default_resampling.py'
2023-03-17T13:55:49,886   adding 'nnunetv2/preprocessing/resampling/utils.py'
2023-03-17T13:55:49,889   adding 'nnunetv2/run/__init__.py'
2023-03-17T13:55:49,892   adding 'nnunetv2/run/load_pretrained_weights.py'
2023-03-17T13:55:49,896   adding 'nnunetv2/run/run_training.py'
2023-03-17T13:55:49,900   adding 'nnunetv2/tests/__init__.py'
2023-03-17T13:55:49,903   adding 'nnunetv2/tests/integration_tests/__init__.py'
2023-03-17T13:55:49,906   adding 'nnunetv2/tests/integration_tests/add_lowres_and_cascade.py'
2023-03-17T13:55:49,909   adding 'nnunetv2/tests/integration_tests/cleanup_integration_test.py'
2023-03-17T13:55:49,912   adding 'nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py'
2023-03-17T13:55:49,915   adding 'nnunetv2/training/__init__.py'
2023-03-17T13:55:49,918   adding 'nnunetv2/training/data_augmentation/__init__.py'
2023-03-17T13:55:49,921   adding 'nnunetv2/training/data_augmentation/compute_initial_patch_size.py'
2023-03-17T13:55:49,925   adding 'nnunetv2/training/data_augmentation/custom_transforms/__init__.py'
2023-03-17T13:55:49,928   adding 'nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py'
2023-03-17T13:55:49,931   adding 'nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py'
2023-03-17T13:55:49,933   adding 'nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py'
2023-03-17T13:55:49,936   adding 'nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py'
2023-03-17T13:55:49,938   adding 'nnunetv2/training/data_augmentation/custom_transforms/masking.py'
2023-03-17T13:55:49,982   adding 'nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py'
2023-03-17T13:55:49,984   adding 'nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py'
2023-03-17T13:55:49,988   adding 'nnunetv2/training/dataloading/__init__.py'
2023-03-17T13:55:49,992   adding 'nnunetv2/training/dataloading/base_data_loader.py'
2023-03-17T13:55:50,002   adding 'nnunetv2/training/dataloading/data_loader_2d.py'
2023-03-17T13:55:50,005   adding 'nnunetv2/training/dataloading/data_loader_3d.py'
2023-03-17T13:55:50,008   adding 'nnunetv2/training/dataloading/nnunet_dataset.py'
2023-03-17T13:55:50,011   adding 'nnunetv2/training/dataloading/utils.py'
2023-03-17T13:55:50,014   adding 'nnunetv2/training/logging/__init__.py'
2023-03-17T13:55:50,017   adding 'nnunetv2/training/logging/nnunet_logger.py'
2023-03-17T13:55:50,021   adding 'nnunetv2/training/loss/__init__.py'
2023-03-17T13:55:50,024   adding 'nnunetv2/training/loss/compound_losses.py'
2023-03-17T13:55:50,027   adding 'nnunetv2/training/loss/deep_supervision.py'
2023-03-17T13:55:50,030   adding 'nnunetv2/training/loss/dice.py'
2023-03-17T13:55:50,054   adding 'nnunetv2/training/loss/robust_ce_loss.py'
2023-03-17T13:55:50,057   adding 'nnunetv2/training/lr_scheduler/__init__.py'
2023-03-17T13:55:50,060   adding 'nnunetv2/training/lr_scheduler/polylr.py'
2023-03-17T13:55:50,063   adding 'nnunetv2/training/nnUNetTrainer/__init__.py'
2023-03-17T13:55:50,085   adding 'nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py'
2023-03-17T13:55:50,090   adding 'nnunetv2/training/nnUNetTrainer/variants/__init__.py'
2023-03-17T13:55:50,093   adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py'
2023-03-17T13:55:50,096   adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py'
2023-03-17T13:55:50,099   adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py'
2023-03-17T13:55:50,102   adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py'
2023-03-17T13:55:50,107   adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py'
2023-03-17T13:55:50,111   adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py'
2023-03-17T13:55:50,113   adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py'
2023-03-17T13:55:50,116   adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py'
2023-03-17T13:55:50,120   adding 'nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py'
2023-03-17T13:55:50,122   adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py'
2023-03-17T13:55:50,125   adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py'
2023-03-17T13:55:50,128   adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py'
2023-03-17T13:55:50,131   adding 'nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py'
2023-03-17T13:55:50,133   adding 'nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py'
2023-03-17T13:55:50,137   adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py'
2023-03-17T13:55:50,140   adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py'
2023-03-17T13:55:50,143   adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py'
2023-03-17T13:55:50,146   adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py'
2023-03-17T13:55:50,149   adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py'
2023-03-17T13:55:50,152   adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py'
2023-03-17T13:55:50,155   adding 'nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py'
2023-03-17T13:55:50,158   adding 'nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py'
2023-03-17T13:55:50,161   adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py'
2023-03-17T13:55:50,164   adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py'
2023-03-17T13:55:50,167   adding 'nnunetv2/utilities/__init__.py'
2023-03-17T13:55:50,170   adding 'nnunetv2/utilities/collate_outputs.py'
2023-03-17T13:55:50,173   adding 'nnunetv2/utilities/dataset_name_id_conversion.py'
2023-03-17T13:55:50,176   adding 'nnunetv2/utilities/ddp_allgather.py'
2023-03-17T13:55:50,178   adding 'nnunetv2/utilities/default_n_proc_DA.py'
2023-03-17T13:55:50,182   adding 'nnunetv2/utilities/file_path_utilities.py'
2023-03-17T13:55:50,185   adding 'nnunetv2/utilities/find_class_by_name.py'
2023-03-17T13:55:50,188   adding 'nnunetv2/utilities/get_network_from_plans.py'
2023-03-17T13:55:50,190   adding 'nnunetv2/utilities/helpers.py'
2023-03-17T13:55:50,193   adding 'nnunetv2/utilities/json_export.py'
2023-03-17T13:55:50,195   adding 'nnunetv2/utilities/network_initialization.py'
2023-03-17T13:55:50,199   adding 'nnunetv2/utilities/overlay_plots.py'
2023-03-17T13:55:50,202   adding 'nnunetv2/utilities/tensor_utilities.py'
2023-03-17T13:55:50,205   adding 'nnunetv2/utilities/utils.py'
2023-03-17T13:55:50,208   adding 'nnunetv2/utilities/label_handling/__init__.py'
2023-03-17T13:55:50,213   adding 'nnunetv2/utilities/label_handling/label_handling.py'
2023-03-17T13:55:50,216   adding 'nnunetv2/utilities/plans_handling/__init__.py'
2023-03-17T13:55:50,220   adding 'nnunetv2/utilities/plans_handling/plans_handler.py'
2023-03-17T13:55:50,228   adding 'nnunetv2-2.0.dist-info/LICENSE'
2023-03-17T13:55:50,230   adding 'nnunetv2-2.0.dist-info/METADATA'
2023-03-17T13:55:50,232   adding 'nnunetv2-2.0.dist-info/WHEEL'
2023-03-17T13:55:50,235   adding 'nnunetv2-2.0.dist-info/entry_points.txt'
2023-03-17T13:55:50,237   adding 'nnunetv2-2.0.dist-info/top_level.txt'
2023-03-17T13:55:50,241   adding 'nnunetv2-2.0.dist-info/RECORD'
2023-03-17T13:55:50,256   removing build/bdist.linux-armv7l/wheel
2023-03-17T13:55:50,512   Building wheel for nnunetv2 (setup.py): finished with status 'done'
2023-03-17T13:55:50,525   Created wheel for nnunetv2: filename=nnunetv2-2.0-py3-none-any.whl size=211281 sha256=fdacc5b6c5ae86113368c37f25e21643894052a24c65235ffff6c37a0d1a7b31
2023-03-17T13:55:50,527   Stored in directory: /tmp/pip-ephem-wheel-cache-ifscw_iu/wheels/94/bb/87/fe103c056dd631077490591a1885a2138788183949d43cfbcd
2023-03-17T13:55:50,567 Successfully built nnunetv2
2023-03-17T13:55:50,596 Removed build tracker: '/tmp/pip-build-tracker-ffdwdi06'