2023-03-18T11:49:43,945 Created temporary directory: /tmp/pip-ephem-wheel-cache-bcubjgh0 2023-03-18T11:49:43,947 Created temporary directory: /tmp/pip-build-tracker-2ztyz_ek 2023-03-18T11:49:43,948 Initialized build tracking at /tmp/pip-build-tracker-2ztyz_ek 2023-03-18T11:49:43,948 Created build tracker: /tmp/pip-build-tracker-2ztyz_ek 2023-03-18T11:49:43,948 Entered build tracker: /tmp/pip-build-tracker-2ztyz_ek 2023-03-18T11:49:43,949 Created temporary directory: /tmp/pip-wheel-ma8g5hdl 2023-03-18T11:49:43,953 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-03-18T11:49:43,956 Created temporary directory: /tmp/pip-ephem-wheel-cache-xtztx738 2023-03-18T11:49:43,988 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-03-18T11:49:43,991 2 location(s) to search for versions of pyobo: 2023-03-18T11:49:43,991 * https://pypi.org/simple/pyobo/ 2023-03-18T11:49:43,991 * https://www.piwheels.org/simple/pyobo/ 2023-03-18T11:49:43,992 Fetching project page and analyzing links: https://pypi.org/simple/pyobo/ 2023-03-18T11:49:43,992 Getting page https://pypi.org/simple/pyobo/ 2023-03-18T11:49:43,994 Found index url https://pypi.org/simple 2023-03-18T11:49:44,047 Fetched page https://pypi.org/simple/pyobo/ as application/vnd.pypi.simple.v1+json 2023-03-18T11:49:44,067 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/98/5e/ad7ea3dab1d88562b4ccf8873bfab9c49117343adbead05aff3d31ab6bc9/pyobo-0.0.1-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6) 2023-03-18T11:49:44,068 Found link https://files.pythonhosted.org/packages/9e/97/87e030c2c9e7af6ad6efae9615fae22e55782f97232113cbde014685bd5d/pyobo-0.0.1.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6), version: 0.0.1 2023-03-18T11:49:44,068 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/ae/3c/a49046cd777ecde3b93aa287595d97889b19f25a27ff3262e07303477629/pyobo-0.0.2-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-03-18T11:49:44,068 Found link https://files.pythonhosted.org/packages/e4/65/63519297121c87f4f86f99444043734f2eaebe083541e588475f77622284/pyobo-0.0.2.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.2 2023-03-18T11:49:44,069 Skipping link: No binaries permitted for pyobo: 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2023-03-18T11:49:44,073 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/16/13/e4c80bcce8ecf7a0b87c82e510655799d58700b589a666d0af1561bbe4e7/pyobo-0.1.1-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-03-18T11:49:44,074 Found link https://files.pythonhosted.org/packages/64/ef/56ba6c14369ab67be4a3eb1a5fa5f5c5f95da2f76efc83fa742b47fdfd96/pyobo-0.1.1.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.1.1 2023-03-18T11:49:44,074 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/c8/c9/40d1461f8009f21f300a120cbe42c85f2749757140d16195517d53506301/pyobo-0.1.2-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-03-18T11:49:44,075 Found link https://files.pythonhosted.org/packages/b7/57/8d5eda3353620cfe3984ca65d32a2b6d4d445412224c470991ecc76ed04a/pyobo-0.1.2.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.1.2 2023-03-18T11:49:44,075 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/35/87/944b0f8de93ee584e8a20aa2ddc5b354ef7c5fa92e559e2f3cc8a07a2448/pyobo-0.1.3-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-03-18T11:49:44,075 Found link https://files.pythonhosted.org/packages/55/54/ecd223332080bbca4d4944ca95bd656c3dddecac2045c6f1f6a4545ea178/pyobo-0.1.3.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.1.3 2023-03-18T11:49:44,076 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/d7/34/13786f9e7e7ccec946d970eed81d08e859c3386afb58fd19c4fee8e41b1d/pyobo-0.2.0-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6) 2023-03-18T11:49:44,076 Found link https://files.pythonhosted.org/packages/a7/60/0ccaa58ebdba394749de119cf995e296338b14e9743d0be670ee7f4ef6fb/pyobo-0.2.0.tar.gz (from 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2023-03-18T11:49:44,079 Found link https://files.pythonhosted.org/packages/17/72/9da15b783fda89d16e6b4e1b3002b1edef6a65258e8fb639609c0d3dfb41/pyobo-0.2.4.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.4 2023-03-18T11:49:44,080 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/03/40/0132f29aa34cdc8d3d625017621979f0cc783ce9f80d8cb04370417c6eb3/pyobo-0.2.5-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-03-18T11:49:44,080 Found link https://files.pythonhosted.org/packages/52/97/2812dd52233d4de0eb8da355bfab57f4dcd281edaaac1ef7a5d5bd0af83d/pyobo-0.2.5.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.5 2023-03-18T11:49:44,080 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/c0/b4/e473bd4bc0fe07387b7bdcc649a88c8908e974a7fc41d4258ca53750331f/pyobo-0.2.6-py3-none-any.whl (from https://pypi.org/simple/pyobo/) 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https://www.piwheels.org/simple/pyobo/pyobo-0.0.3-py3-none-any.whl#sha256=ca6f721336e89df9ff8e2b71ea53bfa443d58d60b2d5997b3ed771f23b35b7b9 (from https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.7) 2023-03-18T11:49:44,323 Skipping link: No binaries permitted for pyobo: https://www.piwheels.org/simple/pyobo/pyobo-0.0.2-py3-none-any.whl#sha256=9c2d580cffab8a8ca4ae56b615ddb82ed18a1d7e174818557da52dba258eaa46 (from https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.7) 2023-03-18T11:49:44,323 Skipping link: No binaries permitted for pyobo: https://www.piwheels.org/simple/pyobo/pyobo-0.0.1-py3-none-any.whl#sha256=fa8b0bd5daff8df2ad48a133514a2b5fee29f18f806465ef49f7cc12042c4e51 (from https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.6) 2023-03-18T11:49:44,324 Skipping link: not a file: https://www.piwheels.org/simple/pyobo/ 2023-03-18T11:49:44,324 Skipping link: not a file: https://pypi.org/simple/pyobo/ 2023-03-18T11:49:44,349 Given no hashes to check 1 links for project 'pyobo': discarding no candidates 2023-03-18T11:49:44,366 Collecting pyobo==0.8.13 2023-03-18T11:49:44,369 Created temporary directory: /tmp/pip-unpack-ic34m25u 2023-03-18T11:49:45,021 Downloading pyobo-0.8.13.tar.gz (23.1 MB) 2023-03-18T11:49:54,159 Added pyobo==0.8.13 from https://files.pythonhosted.org/packages/f8/4e/9cf79d86a50880901f2368122169391554c48d818025bc29ff02fe294b85/pyobo-0.8.13.tar.gz to build tracker '/tmp/pip-build-tracker-2ztyz_ek' 2023-03-18T11:49:54,164 Created temporary directory: /tmp/pip-build-env-hqkkyi89 2023-03-18T11:49:54,174 Installing build dependencies: started 2023-03-18T11:49:54,175 Running command pip subprocess to install build dependencies 2023-03-18T11:49:55,395 Using pip 23.0.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-03-18T11:49:55,973 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-03-18T11:49:56,001 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-03-18T11:49:57,663 Collecting setuptools 2023-03-18T11:49:57,766 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.6.0-py3-none-any.whl (1.1 MB) 2023-03-18T11:49:58,041 Collecting wheel 2023-03-18T11:49:58,061 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-03-18T11:49:59,836 Installing collected packages: wheel, setuptools 2023-03-18T11:50:00,078 Creating /tmp/pip-build-env-hqkkyi89/overlay/bin 2023-03-18T11:50:00,080 changing mode of /tmp/pip-build-env-hqkkyi89/overlay/bin/wheel to 755 2023-03-18T11:50:02,295 Successfully installed setuptools-67.6.0 wheel-0.40.0 2023-03-18T11:50:02,773 Installing build dependencies: finished with status 'done' 2023-03-18T11:50:02,779 Getting requirements to build wheel: started 2023-03-18T11:50:02,780 Running command Getting requirements to build wheel 2023-03-18T11:50:03,379 /tmp/pip-build-env-hqkkyi89/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:516: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2023-03-18T11:50:03,380 warnings.warn(msg, warning_class) 2023-03-18T11:50:03,540 running egg_info 2023-03-18T11:50:03,545 writing src/pyobo.egg-info/PKG-INFO 2023-03-18T11:50:03,548 writing dependency_links to src/pyobo.egg-info/dependency_links.txt 2023-03-18T11:50:03,551 writing entry points to src/pyobo.egg-info/entry_points.txt 2023-03-18T11:50:03,553 writing requirements to src/pyobo.egg-info/requires.txt 2023-03-18T11:50:03,554 writing top-level names to src/pyobo.egg-info/top_level.txt 2023-03-18T11:50:03,589 reading manifest file 'src/pyobo.egg-info/SOURCES.txt' 2023-03-18T11:50:03,608 reading manifest template 'MANIFEST.in' 2023-03-18T11:50:03,624 no previously-included directories found matching 'benchmarking' 2023-03-18T11:50:03,625 no previously-included directories found matching 'tests/.pytest_cache' 2023-03-18T11:50:03,703 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2023-03-18T11:50:03,704 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2023-03-18T11:50:03,706 warning: no previously-included files matching '*.so' found anywhere in distribution 2023-03-18T11:50:03,708 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2023-03-18T11:50:03,709 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2023-03-18T11:50:03,710 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2023-03-18T11:50:03,711 warning: no previously-included files found matching '.bumpversion.cfg' 2023-03-18T11:50:03,712 warning: no previously-included files found matching 'Dockerfile' 2023-03-18T11:50:03,713 warning: no previously-included files found matching 'docker-compose.yml' 2023-03-18T11:50:03,715 adding license file 'LICENSE' 2023-03-18T11:50:03,730 writing manifest file 'src/pyobo.egg-info/SOURCES.txt' 2023-03-18T11:50:03,792 Getting requirements to build wheel: finished with status 'done' 2023-03-18T11:50:03,802 Created temporary directory: /tmp/pip-modern-metadata-s1g0uxrf 2023-03-18T11:50:03,804 Preparing metadata (pyproject.toml): started 2023-03-18T11:50:03,805 Running command Preparing metadata (pyproject.toml) 2023-03-18T11:50:04,377 /tmp/pip-build-env-hqkkyi89/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:516: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2023-03-18T11:50:04,378 warnings.warn(msg, warning_class) 2023-03-18T11:50:04,405 running dist_info 2023-03-18T11:50:04,427 creating /tmp/pip-modern-metadata-s1g0uxrf/pyobo.egg-info 2023-03-18T11:50:04,431 writing /tmp/pip-modern-metadata-s1g0uxrf/pyobo.egg-info/PKG-INFO 2023-03-18T11:50:04,435 writing dependency_links to /tmp/pip-modern-metadata-s1g0uxrf/pyobo.egg-info/dependency_links.txt 2023-03-18T11:50:04,438 writing entry points to /tmp/pip-modern-metadata-s1g0uxrf/pyobo.egg-info/entry_points.txt 2023-03-18T11:50:04,440 writing requirements to /tmp/pip-modern-metadata-s1g0uxrf/pyobo.egg-info/requires.txt 2023-03-18T11:50:04,441 writing top-level names to /tmp/pip-modern-metadata-s1g0uxrf/pyobo.egg-info/top_level.txt 2023-03-18T11:50:04,442 writing manifest file '/tmp/pip-modern-metadata-s1g0uxrf/pyobo.egg-info/SOURCES.txt' 2023-03-18T11:50:04,478 reading manifest file '/tmp/pip-modern-metadata-s1g0uxrf/pyobo.egg-info/SOURCES.txt' 2023-03-18T11:50:04,480 reading manifest template 'MANIFEST.in' 2023-03-18T11:50:04,496 no previously-included directories found matching 'benchmarking' 2023-03-18T11:50:04,497 no previously-included directories found matching 'tests/.pytest_cache' 2023-03-18T11:50:04,498 no previously-included directories found matching 'docs/source/api' 2023-03-18T11:50:04,578 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2023-03-18T11:50:04,579 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2023-03-18T11:50:04,580 warning: no previously-included files matching '*.so' found anywhere in distribution 2023-03-18T11:50:04,581 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2023-03-18T11:50:04,582 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2023-03-18T11:50:04,584 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2023-03-18T11:50:04,584 warning: no previously-included files found matching '.bumpversion.cfg' 2023-03-18T11:50:04,585 warning: no previously-included files found matching 'Dockerfile' 2023-03-18T11:50:04,586 warning: no previously-included files found matching 'docker-compose.yml' 2023-03-18T11:50:04,588 adding license file 'LICENSE' 2023-03-18T11:50:04,600 writing manifest file '/tmp/pip-modern-metadata-s1g0uxrf/pyobo.egg-info/SOURCES.txt' 2023-03-18T11:50:04,602 creating '/tmp/pip-modern-metadata-s1g0uxrf/pyobo-0.8.13.dist-info' 2023-03-18T11:50:04,786 Preparing metadata (pyproject.toml): finished with status 'done' 2023-03-18T11:50:04,795 Source in /tmp/pip-wheel-ma8g5hdl/pyobo_bb68396d88c140e18c611718f7978150 has version 0.8.13, which satisfies requirement pyobo==0.8.13 from https://files.pythonhosted.org/packages/f8/4e/9cf79d86a50880901f2368122169391554c48d818025bc29ff02fe294b85/pyobo-0.8.13.tar.gz 2023-03-18T11:50:04,796 Removed pyobo==0.8.13 from https://files.pythonhosted.org/packages/f8/4e/9cf79d86a50880901f2368122169391554c48d818025bc29ff02fe294b85/pyobo-0.8.13.tar.gz from build tracker '/tmp/pip-build-tracker-2ztyz_ek' 2023-03-18T11:50:04,804 Created temporary directory: /tmp/pip-unpack-1p4sjmgg 2023-03-18T11:50:04,805 Building wheels for collected packages: pyobo 2023-03-18T11:50:04,809 Created temporary directory: /tmp/pip-wheel-ikgfqdes 2023-03-18T11:50:04,810 Destination directory: /tmp/pip-wheel-ikgfqdes 2023-03-18T11:50:04,812 Building wheel for pyobo (pyproject.toml): started 2023-03-18T11:50:04,813 Running command Building wheel for pyobo (pyproject.toml) 2023-03-18T11:50:05,378 /tmp/pip-build-env-hqkkyi89/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:516: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2023-03-18T11:50:05,379 warnings.warn(msg, warning_class) 2023-03-18T11:50:05,460 running bdist_wheel 2023-03-18T11:50:05,494 running build 2023-03-18T11:50:05,494 running build_py 2023-03-18T11:50:05,503 creating build 2023-03-18T11:50:05,503 creating build/lib 2023-03-18T11:50:05,504 creating build/lib/pyobo 2023-03-18T11:50:05,505 copying src/pyobo/getters.py -> build/lib/pyobo 2023-03-18T11:50:05,508 copying src/pyobo/plugins.py -> build/lib/pyobo 2023-03-18T11:50:05,510 copying src/pyobo/mocks.py -> build/lib/pyobo 2023-03-18T11:50:05,511 copying src/pyobo/resource_utils.py -> build/lib/pyobo 2023-03-18T11:50:05,514 copying src/pyobo/gilda_utils.py -> build/lib/pyobo 2023-03-18T11:50:05,516 copying src/pyobo/reader.py -> build/lib/pyobo 2023-03-18T11:50:05,519 copying src/pyobo/identifier_utils.py -> build/lib/pyobo 2023-03-18T11:50:05,520 copying src/pyobo/__init__.py -> build/lib/pyobo 2023-03-18T11:50:05,522 copying src/pyobo/aws.py -> build/lib/pyobo 2023-03-18T11:50:05,524 copying src/pyobo/constants.py -> build/lib/pyobo 2023-03-18T11:50:05,526 copying src/pyobo/__main__.py -> build/lib/pyobo 2023-03-18T11:50:05,528 copying src/pyobo/normalizer.py -> build/lib/pyobo 2023-03-18T11:50:05,530 copying src/pyobo/version.py -> build/lib/pyobo 2023-03-18T11:50:05,535 creating build/lib/pyobo/sources 2023-03-18T11:50:05,536 copying src/pyobo/sources/icd_utils.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,538 copying src/pyobo/sources/pathbank.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,540 copying src/pyobo/sources/npass.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,542 copying src/pyobo/sources/go.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,544 copying src/pyobo/sources/biogrid.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,546 copying src/pyobo/sources/slm.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,548 copying src/pyobo/sources/agrovoc.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,550 copying src/pyobo/sources/msigdb.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,552 copying src/pyobo/sources/mgi.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,554 copying src/pyobo/sources/mirbase_mature.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,556 copying src/pyobo/sources/gmt_utils.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,558 copying src/pyobo/sources/pfam_clan.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,560 copying src/pyobo/sources/rgd.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,562 copying src/pyobo/sources/pfam.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,564 copying src/pyobo/sources/interpro.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,566 copying src/pyobo/sources/ncbigene.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,568 copying src/pyobo/sources/pombase.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,570 copying src/pyobo/sources/drugbank.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,572 copying src/pyobo/sources/famplex.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,575 copying src/pyobo/sources/pid.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,577 copying src/pyobo/sources/gwascentral_phenotype.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,579 copying src/pyobo/sources/gwascentral_study.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,581 copying src/pyobo/sources/hgncgenefamily.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,583 copying src/pyobo/sources/chebi.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,585 copying src/pyobo/sources/complexportal.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,587 copying src/pyobo/sources/dictybase_gene.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,589 copying src/pyobo/sources/chembl.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,591 copying src/pyobo/sources/__init__.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,593 copying src/pyobo/sources/ccle.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,595 copying src/pyobo/sources/antibodyregistry.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,597 copying src/pyobo/sources/rhea.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,599 copying src/pyobo/sources/mirbase_family.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,601 copying src/pyobo/sources/mirbase_constants.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,603 copying src/pyobo/sources/hgnc.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,605 copying src/pyobo/sources/zfin.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,608 copying src/pyobo/sources/cgnc.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,609 copying src/pyobo/sources/itis.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,611 copying src/pyobo/sources/mesh.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,614 copying src/pyobo/sources/drugbank_salt.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,616 copying src/pyobo/sources/mirbase.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,618 copying src/pyobo/sources/icd10.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,620 copying src/pyobo/sources/wikipathways.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,622 copying src/pyobo/sources/sgd.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,624 copying src/pyobo/sources/depmap.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,626 copying src/pyobo/sources/conso.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,628 copying src/pyobo/sources/utils.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,630 copying src/pyobo/sources/reactome.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,632 copying src/pyobo/sources/icd11.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,634 copying src/pyobo/sources/flybase.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,637 copying src/pyobo/sources/pubchem.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,639 copying src/pyobo/sources/expasy.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,642 copying src/pyobo/sources/drugcentral.py -> build/lib/pyobo/sources 2023-03-18T11:50:05,644 creating build/lib/pyobo/registries 2023-03-18T11:50:05,645 copying src/pyobo/registries/metaregistry.py -> build/lib/pyobo/registries 2023-03-18T11:50:05,648 copying src/pyobo/registries/__init__.py -> build/lib/pyobo/registries 2023-03-18T11:50:05,650 creating build/lib/pyobo/resources 2023-03-18T11:50:05,651 copying src/pyobo/resources/ncbitaxon.py -> build/lib/pyobo/resources 2023-03-18T11:50:05,653 copying src/pyobo/resources/__init__.py -> build/lib/pyobo/resources 2023-03-18T11:50:05,655 copying src/pyobo/resources/ro.py -> build/lib/pyobo/resources 2023-03-18T11:50:05,658 creating build/lib/pyobo/apps 2023-03-18T11:50:05,659 copying src/pyobo/apps/__init__.py -> build/lib/pyobo/apps 2023-03-18T11:50:05,661 copying src/pyobo/apps/cli.py -> build/lib/pyobo/apps 2023-03-18T11:50:05,663 creating build/lib/pyobo/api 2023-03-18T11:50:05,664 copying src/pyobo/api/metadata.py -> build/lib/pyobo/api 2023-03-18T11:50:05,666 copying src/pyobo/api/alts.py -> build/lib/pyobo/api 2023-03-18T11:50:05,668 copying src/pyobo/api/hierarchy.py -> build/lib/pyobo/api 2023-03-18T11:50:05,671 copying src/pyobo/api/properties.py -> build/lib/pyobo/api 2023-03-18T11:50:05,673 copying src/pyobo/api/__init__.py -> build/lib/pyobo/api 2023-03-18T11:50:05,675 copying src/pyobo/api/names.py -> build/lib/pyobo/api 2023-03-18T11:50:05,677 copying src/pyobo/api/species.py -> build/lib/pyobo/api 2023-03-18T11:50:05,679 copying src/pyobo/api/xrefs.py -> build/lib/pyobo/api 2023-03-18T11:50:05,681 copying src/pyobo/api/relations.py -> build/lib/pyobo/api 2023-03-18T11:50:05,683 copying src/pyobo/api/typedefs.py -> build/lib/pyobo/api 2023-03-18T11:50:05,685 copying src/pyobo/api/utils.py -> build/lib/pyobo/api 2023-03-18T11:50:05,688 creating build/lib/pyobo/utils 2023-03-18T11:50:05,689 copying src/pyobo/utils/io.py -> build/lib/pyobo/utils 2023-03-18T11:50:05,691 copying src/pyobo/utils/cache.py -> build/lib/pyobo/utils 2023-03-18T11:50:05,693 copying src/pyobo/utils/path.py -> build/lib/pyobo/utils 2023-03-18T11:50:05,695 copying src/pyobo/utils/misc.py -> build/lib/pyobo/utils 2023-03-18T11:50:05,697 copying src/pyobo/utils/__init__.py -> build/lib/pyobo/utils 2023-03-18T11:50:05,699 copying src/pyobo/utils/iter.py -> build/lib/pyobo/utils 2023-03-18T11:50:05,701 copying src/pyobo/utils/ndex_utils.py -> build/lib/pyobo/utils 2023-03-18T11:50:05,703 creating build/lib/pyobo/ssg 2023-03-18T11:50:05,704 copying src/pyobo/ssg/__init__.py -> build/lib/pyobo/ssg 2023-03-18T11:50:05,708 creating build/lib/pyobo/xrefdb 2023-03-18T11:50:05,709 copying src/pyobo/xrefdb/priority.py -> build/lib/pyobo/xrefdb 2023-03-18T11:50:05,711 copying src/pyobo/xrefdb/bengo.py -> build/lib/pyobo/xrefdb 2023-03-18T11:50:05,712 copying src/pyobo/xrefdb/__init__.py -> build/lib/pyobo/xrefdb 2023-03-18T11:50:05,714 copying src/pyobo/xrefdb/canonicalizer.py -> build/lib/pyobo/xrefdb 2023-03-18T11:50:05,717 copying src/pyobo/xrefdb/xrefs_pipeline.py -> build/lib/pyobo/xrefdb 2023-03-18T11:50:05,720 creating build/lib/pyobo/cli 2023-03-18T11:50:05,721 copying src/pyobo/cli/lookup.py -> build/lib/pyobo/cli 2023-03-18T11:50:05,723 copying src/pyobo/cli/__init__.py -> build/lib/pyobo/cli 2023-03-18T11:50:05,725 copying src/pyobo/cli/database.py -> build/lib/pyobo/cli 2023-03-18T11:50:05,728 copying src/pyobo/cli/aws.py -> build/lib/pyobo/cli 2023-03-18T11:50:05,730 copying src/pyobo/cli/cli.py -> build/lib/pyobo/cli 2023-03-18T11:50:05,734 copying src/pyobo/cli/utils.py -> build/lib/pyobo/cli 2023-03-18T11:50:05,736 creating build/lib/pyobo/struct 2023-03-18T11:50:05,737 copying src/pyobo/struct/struct.py -> build/lib/pyobo/struct 2023-03-18T11:50:05,741 copying src/pyobo/struct/typedef.py -> build/lib/pyobo/struct 2023-03-18T11:50:05,743 copying src/pyobo/struct/reference.py -> build/lib/pyobo/struct 2023-03-18T11:50:05,745 copying src/pyobo/struct/__init__.py -> build/lib/pyobo/struct 2023-03-18T11:50:05,747 copying src/pyobo/struct/utils.py -> build/lib/pyobo/struct 2023-03-18T11:50:05,750 creating build/lib/pyobo/sources/umls 2023-03-18T11:50:05,751 copying src/pyobo/sources/umls/umls.py -> build/lib/pyobo/sources/umls 2023-03-18T11:50:05,753 copying src/pyobo/sources/umls/__init__.py -> build/lib/pyobo/sources/umls 2023-03-18T11:50:05,755 copying src/pyobo/sources/umls/__main__.py -> build/lib/pyobo/sources/umls 2023-03-18T11:50:05,757 creating build/lib/pyobo/sources/uniprot 2023-03-18T11:50:05,758 copying src/pyobo/sources/uniprot/uniprot_ptm.py -> build/lib/pyobo/sources/uniprot 2023-03-18T11:50:05,760 copying src/pyobo/sources/uniprot/__init__.py -> build/lib/pyobo/sources/uniprot 2023-03-18T11:50:05,762 copying src/pyobo/sources/uniprot/uniprot.py -> build/lib/pyobo/sources/uniprot 2023-03-18T11:50:05,765 creating build/lib/pyobo/sources/selventa 2023-03-18T11:50:05,765 copying src/pyobo/sources/selventa/sdis.py -> build/lib/pyobo/sources/selventa 2023-03-18T11:50:05,767 copying src/pyobo/sources/selventa/scomp.py -> build/lib/pyobo/sources/selventa 2023-03-18T11:50:05,769 copying src/pyobo/sources/selventa/schem.py -> build/lib/pyobo/sources/selventa 2023-03-18T11:50:05,771 copying src/pyobo/sources/selventa/__init__.py -> build/lib/pyobo/sources/selventa 2023-03-18T11:50:05,773 copying src/pyobo/sources/selventa/sfam.py -> build/lib/pyobo/sources/selventa 2023-03-18T11:50:05,775 creating build/lib/pyobo/sources/kegg 2023-03-18T11:50:05,776 copying src/pyobo/sources/kegg/api.py -> build/lib/pyobo/sources/kegg 2023-03-18T11:50:05,779 copying src/pyobo/sources/kegg/genes.py -> build/lib/pyobo/sources/kegg 2023-03-18T11:50:05,781 copying src/pyobo/sources/kegg/__init__.py -> build/lib/pyobo/sources/kegg 2023-03-18T11:50:05,783 copying src/pyobo/sources/kegg/genome.py -> build/lib/pyobo/sources/kegg 2023-03-18T11:50:05,784 copying src/pyobo/sources/kegg/pathway.py -> build/lib/pyobo/sources/kegg 2023-03-18T11:50:05,788 creating build/lib/pyobo/apps/mapper 2023-03-18T11:50:05,788 copying src/pyobo/apps/mapper/__init__.py -> build/lib/pyobo/apps/mapper 2023-03-18T11:50:05,790 copying src/pyobo/apps/mapper/cli.py -> build/lib/pyobo/apps/mapper 2023-03-18T11:50:05,792 copying src/pyobo/apps/mapper/mapper.py -> build/lib/pyobo/apps/mapper 2023-03-18T11:50:05,794 copying src/pyobo/apps/mapper/__main__.py -> build/lib/pyobo/apps/mapper 2023-03-18T11:50:05,797 creating build/lib/pyobo/apps/gilda 2023-03-18T11:50:05,798 copying src/pyobo/apps/gilda/__init__.py -> build/lib/pyobo/apps/gilda 2023-03-18T11:50:05,800 copying src/pyobo/apps/gilda/cli.py -> build/lib/pyobo/apps/gilda 2023-03-18T11:50:05,801 copying src/pyobo/apps/gilda/app.py -> build/lib/pyobo/apps/gilda 2023-03-18T11:50:05,803 copying src/pyobo/apps/gilda/__main__.py -> build/lib/pyobo/apps/gilda 2023-03-18T11:50:05,806 creating build/lib/pyobo/xrefdb/sources 2023-03-18T11:50:05,807 copying src/pyobo/xrefdb/sources/compath.py -> build/lib/pyobo/xrefdb/sources 2023-03-18T11:50:05,809 copying src/pyobo/xrefdb/sources/biomappings.py -> build/lib/pyobo/xrefdb/sources 2023-03-18T11:50:05,811 copying src/pyobo/xrefdb/sources/famplex.py -> build/lib/pyobo/xrefdb/sources 2023-03-18T11:50:05,813 copying src/pyobo/xrefdb/sources/intact.py -> build/lib/pyobo/xrefdb/sources 2023-03-18T11:50:05,815 copying src/pyobo/xrefdb/sources/chembl.py -> build/lib/pyobo/xrefdb/sources 2023-03-18T11:50:05,816 copying src/pyobo/xrefdb/sources/__init__.py -> build/lib/pyobo/xrefdb/sources 2023-03-18T11:50:05,819 copying src/pyobo/xrefdb/sources/ncit.py -> build/lib/pyobo/xrefdb/sources 2023-03-18T11:50:05,820 copying src/pyobo/xrefdb/sources/cbms2019.py -> build/lib/pyobo/xrefdb/sources 2023-03-18T11:50:05,822 copying src/pyobo/xrefdb/sources/gilda.py -> build/lib/pyobo/xrefdb/sources 2023-03-18T11:50:05,824 copying src/pyobo/xrefdb/sources/pubchem.py -> build/lib/pyobo/xrefdb/sources 2023-03-18T11:50:05,826 copying src/pyobo/xrefdb/sources/wikidata.py -> build/lib/pyobo/xrefdb/sources 2023-03-18T11:50:05,828 running egg_info 2023-03-18T11:50:05,846 writing src/pyobo.egg-info/PKG-INFO 2023-03-18T11:50:05,849 writing dependency_links to src/pyobo.egg-info/dependency_links.txt 2023-03-18T11:50:05,851 writing entry points to src/pyobo.egg-info/entry_points.txt 2023-03-18T11:50:05,853 writing requirements to src/pyobo.egg-info/requires.txt 2023-03-18T11:50:05,854 writing top-level names to src/pyobo.egg-info/top_level.txt 2023-03-18T11:50:05,877 reading manifest file 'src/pyobo.egg-info/SOURCES.txt' 2023-03-18T11:50:05,885 reading manifest template 'MANIFEST.in' 2023-03-18T11:50:05,901 no previously-included directories found matching 'benchmarking' 2023-03-18T11:50:05,902 no previously-included directories found matching 'tests/.pytest_cache' 2023-03-18T11:50:05,980 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2023-03-18T11:50:05,981 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2023-03-18T11:50:05,983 warning: no previously-included files matching '*.so' found anywhere in distribution 2023-03-18T11:50:05,984 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2023-03-18T11:50:05,986 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2023-03-18T11:50:05,987 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2023-03-18T11:50:05,988 warning: no previously-included files found matching '.bumpversion.cfg' 2023-03-18T11:50:05,989 warning: no previously-included files found matching 'Dockerfile' 2023-03-18T11:50:05,990 warning: no previously-included files found matching 'docker-compose.yml' 2023-03-18T11:50:05,992 adding license file 'LICENSE' 2023-03-18T11:50:06,007 writing manifest file 'src/pyobo.egg-info/SOURCES.txt' 2023-03-18T11:50:06,013 /tmp/pip-build-env-hqkkyi89/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyobo.apps.gilda.templates' as data is deprecated, please list it in `packages`. 2023-03-18T11:50:06,014 !! 2023-03-18T11:50:06,014 ############################ 2023-03-18T11:50:06,014 # Package would be ignored # 2023-03-18T11:50:06,014 ############################ 2023-03-18T11:50:06,014 Python recognizes 'pyobo.apps.gilda.templates' as an importable package, 2023-03-18T11:50:06,014 but it is not listed in the `packages` configuration of setuptools. 2023-03-18T11:50:06,015 'pyobo.apps.gilda.templates' has been automatically added to the distribution only 2023-03-18T11:50:06,015 because it may contain data files, but this behavior is likely to change 2023-03-18T11:50:06,015 in future versions of setuptools (and therefore is considered deprecated). 2023-03-18T11:50:06,015 Please make sure that 'pyobo.apps.gilda.templates' is included as a package by using 2023-03-18T11:50:06,015 the `packages` configuration field or the proper discovery methods 2023-03-18T11:50:06,015 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-18T11:50:06,015 instead of `find_packages(...)`/`find:`). 2023-03-18T11:50:06,016 You can read more about "package discovery" and "data files" on setuptools 2023-03-18T11:50:06,016 documentation page. 2023-03-18T11:50:06,016 !! 2023-03-18T11:50:06,016 check.warn(importable) 2023-03-18T11:50:06,016 /tmp/pip-build-env-hqkkyi89/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyobo.apps.mapper.templates' as data is deprecated, please list it in `packages`. 2023-03-18T11:50:06,017 !! 2023-03-18T11:50:06,017 ############################ 2023-03-18T11:50:06,017 # Package would be ignored # 2023-03-18T11:50:06,017 ############################ 2023-03-18T11:50:06,017 Python recognizes 'pyobo.apps.mapper.templates' as an importable package, 2023-03-18T11:50:06,018 but it is not listed in the `packages` configuration of setuptools. 2023-03-18T11:50:06,018 'pyobo.apps.mapper.templates' has been automatically added to the distribution only 2023-03-18T11:50:06,018 because it may contain data files, but this behavior is likely to change 2023-03-18T11:50:06,018 in future versions of setuptools (and therefore is considered deprecated). 2023-03-18T11:50:06,018 Please make sure that 'pyobo.apps.mapper.templates' is included as a package by using 2023-03-18T11:50:06,018 the `packages` configuration field or the proper discovery methods 2023-03-18T11:50:06,019 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-03-18T11:50:06,019 instead of `find_packages(...)`/`find:`). 2023-03-18T11:50:06,019 You can read more about "package discovery" and "data files" on setuptools 2023-03-18T11:50:06,019 documentation page. 2023-03-18T11:50:06,019 !! 2023-03-18T11:50:06,020 check.warn(importable) 2023-03-18T11:50:06,020 copying src/pyobo/registries/metaregistry.json -> build/lib/pyobo/registries 2023-03-18T11:50:06,023 copying src/pyobo/resources/ncbitaxon.tsv.gz -> build/lib/pyobo/resources 2023-03-18T11:50:06,495 copying src/pyobo/resources/ro.tsv -> build/lib/pyobo/resources 2023-03-18T11:50:06,499 copying src/pyobo/ssg/base.html -> build/lib/pyobo/ssg 2023-03-18T11:50:06,501 copying src/pyobo/ssg/index.html -> build/lib/pyobo/ssg 2023-03-18T11:50:06,503 copying src/pyobo/ssg/term.html -> build/lib/pyobo/ssg 2023-03-18T11:50:06,505 copying src/pyobo/ssg/typedef.html -> build/lib/pyobo/ssg 2023-03-18T11:50:06,507 copying src/pyobo/sources/umls/synonym_types.tsv -> build/lib/pyobo/sources/umls 2023-03-18T11:50:06,510 creating build/lib/pyobo/apps/mapper/templates 2023-03-18T11:50:06,511 copying src/pyobo/apps/mapper/templates/base.html -> build/lib/pyobo/apps/mapper/templates 2023-03-18T11:50:06,513 copying src/pyobo/apps/mapper/templates/mapper_home.html -> build/lib/pyobo/apps/mapper/templates 2023-03-18T11:50:06,515 creating build/lib/pyobo/apps/gilda/templates 2023-03-18T11:50:06,516 copying src/pyobo/apps/gilda/templates/base.html -> build/lib/pyobo/apps/gilda/templates 2023-03-18T11:50:06,518 copying src/pyobo/apps/gilda/templates/home.html -> build/lib/pyobo/apps/gilda/templates 2023-03-18T11:50:06,520 copying src/pyobo/apps/gilda/templates/matches.html -> build/lib/pyobo/apps/gilda/templates 2023-03-18T11:50:06,551 installing to build/bdist.linux-armv7l/wheel 2023-03-18T11:50:06,551 running install 2023-03-18T11:50:06,576 running install_lib 2023-03-18T11:50:06,584 creating build/bdist.linux-armv7l 2023-03-18T11:50:06,584 creating build/bdist.linux-armv7l/wheel 2023-03-18T11:50:06,586 creating build/bdist.linux-armv7l/wheel/pyobo 2023-03-18T11:50:06,587 copying build/lib/pyobo/getters.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-03-18T11:50:06,592 creating build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,593 copying build/lib/pyobo/sources/icd_utils.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,595 copying build/lib/pyobo/sources/pathbank.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,597 copying build/lib/pyobo/sources/npass.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,599 copying build/lib/pyobo/sources/go.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,601 copying build/lib/pyobo/sources/biogrid.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,603 copying build/lib/pyobo/sources/slm.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,605 copying build/lib/pyobo/sources/agrovoc.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,607 copying build/lib/pyobo/sources/msigdb.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,609 copying build/lib/pyobo/sources/mgi.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,612 copying build/lib/pyobo/sources/mirbase_mature.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,614 copying build/lib/pyobo/sources/gmt_utils.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,616 copying build/lib/pyobo/sources/pfam_clan.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,618 copying build/lib/pyobo/sources/rgd.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,620 copying build/lib/pyobo/sources/pfam.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,622 copying build/lib/pyobo/sources/interpro.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,625 creating build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2023-03-18T11:50:06,626 copying build/lib/pyobo/sources/umls/umls.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2023-03-18T11:50:06,628 copying build/lib/pyobo/sources/umls/synonym_types.tsv -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2023-03-18T11:50:06,631 copying build/lib/pyobo/sources/umls/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2023-03-18T11:50:06,633 copying build/lib/pyobo/sources/umls/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2023-03-18T11:50:06,634 copying build/lib/pyobo/sources/ncbigene.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,637 copying build/lib/pyobo/sources/pombase.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,639 copying build/lib/pyobo/sources/drugbank.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,641 copying build/lib/pyobo/sources/famplex.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,644 copying build/lib/pyobo/sources/pid.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,646 copying build/lib/pyobo/sources/gwascentral_phenotype.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,648 copying build/lib/pyobo/sources/gwascentral_study.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,650 copying build/lib/pyobo/sources/hgncgenefamily.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,652 copying build/lib/pyobo/sources/chebi.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,654 copying build/lib/pyobo/sources/complexportal.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,656 copying build/lib/pyobo/sources/dictybase_gene.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,658 copying build/lib/pyobo/sources/chembl.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,660 copying build/lib/pyobo/sources/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,662 creating build/bdist.linux-armv7l/wheel/pyobo/sources/uniprot 2023-03-18T11:50:06,663 copying build/lib/pyobo/sources/uniprot/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/uniprot 2023-03-18T11:50:06,666 copying build/lib/pyobo/sources/uniprot/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/uniprot 2023-03-18T11:50:06,667 copying build/lib/pyobo/sources/uniprot/uniprot.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/uniprot 2023-03-18T11:50:06,669 copying build/lib/pyobo/sources/ccle.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,672 creating build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-03-18T11:50:06,673 copying build/lib/pyobo/sources/selventa/sdis.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-03-18T11:50:06,675 copying build/lib/pyobo/sources/selventa/scomp.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-03-18T11:50:06,676 copying build/lib/pyobo/sources/selventa/schem.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-03-18T11:50:06,678 copying build/lib/pyobo/sources/selventa/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-03-18T11:50:06,680 copying build/lib/pyobo/sources/selventa/sfam.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-03-18T11:50:06,682 copying build/lib/pyobo/sources/antibodyregistry.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,684 copying build/lib/pyobo/sources/rhea.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,686 copying build/lib/pyobo/sources/mirbase_family.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,688 copying build/lib/pyobo/sources/mirbase_constants.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,691 creating build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-03-18T11:50:06,692 copying build/lib/pyobo/sources/kegg/api.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-03-18T11:50:06,694 copying build/lib/pyobo/sources/kegg/genes.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-03-18T11:50:06,696 copying build/lib/pyobo/sources/kegg/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-03-18T11:50:06,698 copying build/lib/pyobo/sources/kegg/genome.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-03-18T11:50:06,700 copying build/lib/pyobo/sources/kegg/pathway.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-03-18T11:50:06,703 copying build/lib/pyobo/sources/hgnc.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,706 copying build/lib/pyobo/sources/zfin.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,708 copying build/lib/pyobo/sources/cgnc.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,710 copying build/lib/pyobo/sources/itis.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,712 copying build/lib/pyobo/sources/mesh.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,714 copying build/lib/pyobo/sources/drugbank_salt.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,716 copying build/lib/pyobo/sources/mirbase.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,719 copying build/lib/pyobo/sources/icd10.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,721 copying build/lib/pyobo/sources/wikipathways.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,723 copying build/lib/pyobo/sources/sgd.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,725 copying build/lib/pyobo/sources/depmap.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,727 copying build/lib/pyobo/sources/conso.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,729 copying build/lib/pyobo/sources/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,730 copying build/lib/pyobo/sources/reactome.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,733 copying build/lib/pyobo/sources/icd11.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,735 copying build/lib/pyobo/sources/flybase.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,737 copying build/lib/pyobo/sources/pubchem.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,739 copying build/lib/pyobo/sources/expasy.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,742 copying build/lib/pyobo/sources/drugcentral.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-03-18T11:50:06,744 copying build/lib/pyobo/plugins.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-03-18T11:50:06,746 creating build/bdist.linux-armv7l/wheel/pyobo/registries 2023-03-18T11:50:06,747 copying build/lib/pyobo/registries/metaregistry.py -> build/bdist.linux-armv7l/wheel/pyobo/registries 2023-03-18T11:50:06,750 copying build/lib/pyobo/registries/metaregistry.json -> build/bdist.linux-armv7l/wheel/pyobo/registries 2023-03-18T11:50:06,753 copying build/lib/pyobo/registries/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/registries 2023-03-18T11:50:06,755 creating build/bdist.linux-armv7l/wheel/pyobo/resources 2023-03-18T11:50:06,756 copying build/lib/pyobo/resources/ncbitaxon.tsv.gz -> build/bdist.linux-armv7l/wheel/pyobo/resources 2023-03-18T11:50:07,221 copying build/lib/pyobo/resources/ncbitaxon.py -> build/bdist.linux-armv7l/wheel/pyobo/resources 2023-03-18T11:50:07,223 copying build/lib/pyobo/resources/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/resources 2023-03-18T11:50:07,225 copying build/lib/pyobo/resources/ro.tsv -> build/bdist.linux-armv7l/wheel/pyobo/resources 2023-03-18T11:50:07,228 copying build/lib/pyobo/resources/ro.py -> build/bdist.linux-armv7l/wheel/pyobo/resources 2023-03-18T11:50:07,230 copying build/lib/pyobo/mocks.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-03-18T11:50:07,232 copying build/lib/pyobo/resource_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-03-18T11:50:07,234 copying build/lib/pyobo/gilda_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-03-18T11:50:07,237 copying build/lib/pyobo/reader.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-03-18T11:50:07,240 creating build/bdist.linux-armv7l/wheel/pyobo/apps 2023-03-18T11:50:07,242 creating build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2023-03-18T11:50:07,243 copying build/lib/pyobo/apps/mapper/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2023-03-18T11:50:07,245 copying build/lib/pyobo/apps/mapper/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2023-03-18T11:50:07,248 creating build/bdist.linux-armv7l/wheel/pyobo/apps/mapper/templates 2023-03-18T11:50:07,249 copying build/lib/pyobo/apps/mapper/templates/base.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper/templates 2023-03-18T11:50:07,251 copying build/lib/pyobo/apps/mapper/templates/mapper_home.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper/templates 2023-03-18T11:50:07,253 copying build/lib/pyobo/apps/mapper/mapper.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2023-03-18T11:50:07,255 copying build/lib/pyobo/apps/mapper/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2023-03-18T11:50:07,257 copying build/lib/pyobo/apps/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps 2023-03-18T11:50:07,260 creating build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2023-03-18T11:50:07,261 copying build/lib/pyobo/apps/gilda/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2023-03-18T11:50:07,263 copying build/lib/pyobo/apps/gilda/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2023-03-18T11:50:07,265 creating build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2023-03-18T11:50:07,266 copying build/lib/pyobo/apps/gilda/templates/matches.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2023-03-18T11:50:07,269 copying build/lib/pyobo/apps/gilda/templates/base.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2023-03-18T11:50:07,271 copying build/lib/pyobo/apps/gilda/templates/home.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2023-03-18T11:50:07,272 copying build/lib/pyobo/apps/gilda/app.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2023-03-18T11:50:07,274 copying build/lib/pyobo/apps/gilda/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2023-03-18T11:50:07,276 copying build/lib/pyobo/apps/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/apps 2023-03-18T11:50:07,278 copying build/lib/pyobo/identifier_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-03-18T11:50:07,281 creating build/bdist.linux-armv7l/wheel/pyobo/api 2023-03-18T11:50:07,282 copying build/lib/pyobo/api/metadata.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-03-18T11:50:07,284 copying build/lib/pyobo/api/alts.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-03-18T11:50:07,286 copying build/lib/pyobo/api/hierarchy.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-03-18T11:50:07,288 copying build/lib/pyobo/api/properties.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-03-18T11:50:07,290 copying build/lib/pyobo/api/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-03-18T11:50:07,293 copying build/lib/pyobo/api/names.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-03-18T11:50:07,295 copying build/lib/pyobo/api/species.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-03-18T11:50:07,297 copying build/lib/pyobo/api/xrefs.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-03-18T11:50:07,299 copying build/lib/pyobo/api/relations.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-03-18T11:50:07,301 copying build/lib/pyobo/api/typedefs.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-03-18T11:50:07,303 copying build/lib/pyobo/api/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-03-18T11:50:07,305 copying build/lib/pyobo/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-03-18T11:50:07,307 copying build/lib/pyobo/aws.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-03-18T11:50:07,309 copying build/lib/pyobo/constants.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-03-18T11:50:07,312 creating build/bdist.linux-armv7l/wheel/pyobo/utils 2023-03-18T11:50:07,313 copying build/lib/pyobo/utils/io.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-03-18T11:50:07,315 copying build/lib/pyobo/utils/cache.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-03-18T11:50:07,318 copying build/lib/pyobo/utils/path.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-03-18T11:50:07,320 copying build/lib/pyobo/utils/misc.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-03-18T11:50:07,321 copying build/lib/pyobo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-03-18T11:50:07,323 copying build/lib/pyobo/utils/iter.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-03-18T11:50:07,325 copying build/lib/pyobo/utils/ndex_utils.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-03-18T11:50:07,328 creating build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-03-18T11:50:07,329 copying build/lib/pyobo/ssg/term.html -> build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-03-18T11:50:07,331 copying build/lib/pyobo/ssg/base.html -> build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-03-18T11:50:07,333 copying build/lib/pyobo/ssg/typedef.html -> build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-03-18T11:50:07,335 copying build/lib/pyobo/ssg/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-03-18T11:50:07,337 copying build/lib/pyobo/ssg/index.html -> build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-03-18T11:50:07,340 creating build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-03-18T11:50:07,341 copying build/lib/pyobo/xrefdb/priority.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-03-18T11:50:07,344 creating build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-03-18T11:50:07,345 copying build/lib/pyobo/xrefdb/sources/compath.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-03-18T11:50:07,348 copying build/lib/pyobo/xrefdb/sources/biomappings.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-03-18T11:50:07,350 copying build/lib/pyobo/xrefdb/sources/famplex.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-03-18T11:50:07,352 copying build/lib/pyobo/xrefdb/sources/intact.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-03-18T11:50:07,354 copying build/lib/pyobo/xrefdb/sources/chembl.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-03-18T11:50:07,355 copying build/lib/pyobo/xrefdb/sources/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-03-18T11:50:07,358 copying build/lib/pyobo/xrefdb/sources/ncit.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-03-18T11:50:07,359 copying build/lib/pyobo/xrefdb/sources/cbms2019.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-03-18T11:50:07,361 copying build/lib/pyobo/xrefdb/sources/gilda.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-03-18T11:50:07,363 copying build/lib/pyobo/xrefdb/sources/pubchem.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-03-18T11:50:07,365 copying build/lib/pyobo/xrefdb/sources/wikidata.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-03-18T11:50:07,367 copying build/lib/pyobo/xrefdb/bengo.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-03-18T11:50:07,369 copying build/lib/pyobo/xrefdb/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-03-18T11:50:07,371 copying build/lib/pyobo/xrefdb/canonicalizer.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-03-18T11:50:07,373 copying build/lib/pyobo/xrefdb/xrefs_pipeline.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-03-18T11:50:07,376 creating build/bdist.linux-armv7l/wheel/pyobo/cli 2023-03-18T11:50:07,377 copying build/lib/pyobo/cli/lookup.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-03-18T11:50:07,380 copying build/lib/pyobo/cli/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-03-18T11:50:07,382 copying build/lib/pyobo/cli/database.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-03-18T11:50:07,384 copying build/lib/pyobo/cli/aws.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-03-18T11:50:07,386 copying build/lib/pyobo/cli/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-03-18T11:50:07,388 copying build/lib/pyobo/cli/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-03-18T11:50:07,390 copying build/lib/pyobo/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-03-18T11:50:07,392 creating build/bdist.linux-armv7l/wheel/pyobo/struct 2023-03-18T11:50:07,393 copying build/lib/pyobo/struct/struct.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2023-03-18T11:50:07,396 copying build/lib/pyobo/struct/typedef.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2023-03-18T11:50:07,399 copying build/lib/pyobo/struct/reference.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2023-03-18T11:50:07,401 copying build/lib/pyobo/struct/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2023-03-18T11:50:07,403 copying build/lib/pyobo/struct/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2023-03-18T11:50:07,405 copying build/lib/pyobo/normalizer.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-03-18T11:50:07,407 copying build/lib/pyobo/version.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-03-18T11:50:07,409 running install_egg_info 2023-03-18T11:50:07,420 Copying src/pyobo.egg-info to build/bdist.linux-armv7l/wheel/pyobo-0.8.13-py3.9.egg-info 2023-03-18T11:50:07,435 running install_scripts 2023-03-18T11:50:07,463 creating build/bdist.linux-armv7l/wheel/pyobo-0.8.13.dist-info/WHEEL 2023-03-18T11:50:07,466 creating '/tmp/pip-wheel-ikgfqdes/.tmp-fmmk92l4/pyobo-0.8.13-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-03-18T11:50:07,468 adding 'pyobo/__init__.py' 2023-03-18T11:50:07,470 adding 'pyobo/__main__.py' 2023-03-18T11:50:07,471 adding 'pyobo/aws.py' 2023-03-18T11:50:07,472 adding 'pyobo/constants.py' 2023-03-18T11:50:07,475 adding 'pyobo/getters.py' 2023-03-18T11:50:07,477 adding 'pyobo/gilda_utils.py' 2023-03-18T11:50:07,478 adding 'pyobo/identifier_utils.py' 2023-03-18T11:50:07,480 adding 'pyobo/mocks.py' 2023-03-18T11:50:07,481 adding 'pyobo/normalizer.py' 2023-03-18T11:50:07,483 adding 'pyobo/plugins.py' 2023-03-18T11:50:07,486 adding 'pyobo/reader.py' 2023-03-18T11:50:07,487 adding 'pyobo/resource_utils.py' 2023-03-18T11:50:07,489 adding 'pyobo/version.py' 2023-03-18T11:50:07,491 adding 'pyobo/api/__init__.py' 2023-03-18T11:50:07,492 adding 'pyobo/api/alts.py' 2023-03-18T11:50:07,494 adding 'pyobo/api/hierarchy.py' 2023-03-18T11:50:07,495 adding 'pyobo/api/metadata.py' 2023-03-18T11:50:07,497 adding 'pyobo/api/names.py' 2023-03-18T11:50:07,498 adding 'pyobo/api/properties.py' 2023-03-18T11:50:07,500 adding 'pyobo/api/relations.py' 2023-03-18T11:50:07,501 adding 'pyobo/api/species.py' 2023-03-18T11:50:07,503 adding 'pyobo/api/typedefs.py' 2023-03-18T11:50:07,504 adding 'pyobo/api/utils.py' 2023-03-18T11:50:07,505 adding 'pyobo/api/xrefs.py' 2023-03-18T11:50:07,507 adding 'pyobo/apps/__init__.py' 2023-03-18T11:50:07,508 adding 'pyobo/apps/cli.py' 2023-03-18T11:50:07,510 adding 'pyobo/apps/gilda/__init__.py' 2023-03-18T11:50:07,511 adding 'pyobo/apps/gilda/__main__.py' 2023-03-18T11:50:07,513 adding 'pyobo/apps/gilda/app.py' 2023-03-18T11:50:07,514 adding 'pyobo/apps/gilda/cli.py' 2023-03-18T11:50:07,516 adding 'pyobo/apps/gilda/templates/base.html' 2023-03-18T11:50:07,517 adding 'pyobo/apps/gilda/templates/home.html' 2023-03-18T11:50:07,518 adding 'pyobo/apps/gilda/templates/matches.html' 2023-03-18T11:50:07,520 adding 'pyobo/apps/mapper/__init__.py' 2023-03-18T11:50:07,521 adding 'pyobo/apps/mapper/__main__.py' 2023-03-18T11:50:07,522 adding 'pyobo/apps/mapper/cli.py' 2023-03-18T11:50:07,524 adding 'pyobo/apps/mapper/mapper.py' 2023-03-18T11:50:07,526 adding 'pyobo/apps/mapper/templates/base.html' 2023-03-18T11:50:07,527 adding 'pyobo/apps/mapper/templates/mapper_home.html' 2023-03-18T11:50:07,529 adding 'pyobo/cli/__init__.py' 2023-03-18T11:50:07,530 adding 'pyobo/cli/aws.py' 2023-03-18T11:50:07,532 adding 'pyobo/cli/cli.py' 2023-03-18T11:50:07,534 adding 'pyobo/cli/database.py' 2023-03-18T11:50:07,535 adding 'pyobo/cli/lookup.py' 2023-03-18T11:50:07,537 adding 'pyobo/cli/utils.py' 2023-03-18T11:50:07,539 adding 'pyobo/registries/__init__.py' 2023-03-18T11:50:07,541 adding 'pyobo/registries/metaregistry.json' 2023-03-18T11:50:07,542 adding 'pyobo/registries/metaregistry.py' 2023-03-18T11:50:07,544 adding 'pyobo/resources/__init__.py' 2023-03-18T11:50:07,546 adding 'pyobo/resources/ncbitaxon.py' 2023-03-18T11:50:10,251 adding 'pyobo/resources/ncbitaxon.tsv.gz' 2023-03-18T11:50:10,394 adding 'pyobo/resources/ro.py' 2023-03-18T11:50:10,397 adding 'pyobo/resources/ro.tsv' 2023-03-18T11:50:10,401 adding 'pyobo/sources/__init__.py' 2023-03-18T11:50:10,402 adding 'pyobo/sources/agrovoc.py' 2023-03-18T11:50:10,404 adding 'pyobo/sources/antibodyregistry.py' 2023-03-18T11:50:10,405 adding 'pyobo/sources/biogrid.py' 2023-03-18T11:50:10,407 adding 'pyobo/sources/ccle.py' 2023-03-18T11:50:10,408 adding 'pyobo/sources/cgnc.py' 2023-03-18T11:50:10,410 adding 'pyobo/sources/chebi.py' 2023-03-18T11:50:10,411 adding 'pyobo/sources/chembl.py' 2023-03-18T11:50:10,413 adding 'pyobo/sources/complexportal.py' 2023-03-18T11:50:10,415 adding 'pyobo/sources/conso.py' 2023-03-18T11:50:10,417 adding 'pyobo/sources/depmap.py' 2023-03-18T11:50:10,418 adding 'pyobo/sources/dictybase_gene.py' 2023-03-18T11:50:10,420 adding 'pyobo/sources/drugbank.py' 2023-03-18T11:50:10,422 adding 'pyobo/sources/drugbank_salt.py' 2023-03-18T11:50:10,423 adding 'pyobo/sources/drugcentral.py' 2023-03-18T11:50:10,425 adding 'pyobo/sources/expasy.py' 2023-03-18T11:50:10,427 adding 'pyobo/sources/famplex.py' 2023-03-18T11:50:10,428 adding 'pyobo/sources/flybase.py' 2023-03-18T11:50:10,430 adding 'pyobo/sources/gmt_utils.py' 2023-03-18T11:50:10,431 adding 'pyobo/sources/go.py' 2023-03-18T11:50:10,432 adding 'pyobo/sources/gwascentral_phenotype.py' 2023-03-18T11:50:10,434 adding 'pyobo/sources/gwascentral_study.py' 2023-03-18T11:50:10,436 adding 'pyobo/sources/hgnc.py' 2023-03-18T11:50:10,438 adding 'pyobo/sources/hgncgenefamily.py' 2023-03-18T11:50:10,439 adding 'pyobo/sources/icd10.py' 2023-03-18T11:50:10,441 adding 'pyobo/sources/icd11.py' 2023-03-18T11:50:10,442 adding 'pyobo/sources/icd_utils.py' 2023-03-18T11:50:10,444 adding 'pyobo/sources/interpro.py' 2023-03-18T11:50:10,445 adding 'pyobo/sources/itis.py' 2023-03-18T11:50:10,447 adding 'pyobo/sources/mesh.py' 2023-03-18T11:50:10,449 adding 'pyobo/sources/mgi.py' 2023-03-18T11:50:10,451 adding 'pyobo/sources/mirbase.py' 2023-03-18T11:50:10,452 adding 'pyobo/sources/mirbase_constants.py' 2023-03-18T11:50:10,454 adding 'pyobo/sources/mirbase_family.py' 2023-03-18T11:50:10,455 adding 'pyobo/sources/mirbase_mature.py' 2023-03-18T11:50:10,457 adding 'pyobo/sources/msigdb.py' 2023-03-18T11:50:10,459 adding 'pyobo/sources/ncbigene.py' 2023-03-18T11:50:10,461 adding 'pyobo/sources/npass.py' 2023-03-18T11:50:10,462 adding 'pyobo/sources/pathbank.py' 2023-03-18T11:50:10,464 adding 'pyobo/sources/pfam.py' 2023-03-18T11:50:10,465 adding 'pyobo/sources/pfam_clan.py' 2023-03-18T11:50:10,467 adding 'pyobo/sources/pid.py' 2023-03-18T11:50:10,468 adding 'pyobo/sources/pombase.py' 2023-03-18T11:50:10,470 adding 'pyobo/sources/pubchem.py' 2023-03-18T11:50:10,472 adding 'pyobo/sources/reactome.py' 2023-03-18T11:50:10,473 adding 'pyobo/sources/rgd.py' 2023-03-18T11:50:10,475 adding 'pyobo/sources/rhea.py' 2023-03-18T11:50:10,476 adding 'pyobo/sources/sgd.py' 2023-03-18T11:50:10,478 adding 'pyobo/sources/slm.py' 2023-03-18T11:50:10,479 adding 'pyobo/sources/utils.py' 2023-03-18T11:50:10,481 adding 'pyobo/sources/wikipathways.py' 2023-03-18T11:50:10,482 adding 'pyobo/sources/zfin.py' 2023-03-18T11:50:10,484 adding 'pyobo/sources/kegg/__init__.py' 2023-03-18T11:50:10,486 adding 'pyobo/sources/kegg/api.py' 2023-03-18T11:50:10,487 adding 'pyobo/sources/kegg/genes.py' 2023-03-18T11:50:10,489 adding 'pyobo/sources/kegg/genome.py' 2023-03-18T11:50:10,491 adding 'pyobo/sources/kegg/pathway.py' 2023-03-18T11:50:10,493 adding 'pyobo/sources/selventa/__init__.py' 2023-03-18T11:50:10,494 adding 'pyobo/sources/selventa/schem.py' 2023-03-18T11:50:10,496 adding 'pyobo/sources/selventa/scomp.py' 2023-03-18T11:50:10,498 adding 'pyobo/sources/selventa/sdis.py' 2023-03-18T11:50:10,499 adding 'pyobo/sources/selventa/sfam.py' 2023-03-18T11:50:10,501 adding 'pyobo/sources/umls/__init__.py' 2023-03-18T11:50:10,503 adding 'pyobo/sources/umls/__main__.py' 2023-03-18T11:50:10,505 adding 'pyobo/sources/umls/synonym_types.tsv' 2023-03-18T11:50:10,507 adding 'pyobo/sources/umls/umls.py' 2023-03-18T11:50:10,509 adding 'pyobo/sources/uniprot/__init__.py' 2023-03-18T11:50:10,510 adding 'pyobo/sources/uniprot/uniprot.py' 2023-03-18T11:50:10,512 adding 'pyobo/sources/uniprot/uniprot_ptm.py' 2023-03-18T11:50:10,514 adding 'pyobo/ssg/__init__.py' 2023-03-18T11:50:10,515 adding 'pyobo/ssg/base.html' 2023-03-18T11:50:10,517 adding 'pyobo/ssg/index.html' 2023-03-18T11:50:10,518 adding 'pyobo/ssg/term.html' 2023-03-18T11:50:10,520 adding 'pyobo/ssg/typedef.html' 2023-03-18T11:50:10,522 adding 'pyobo/struct/__init__.py' 2023-03-18T11:50:10,523 adding 'pyobo/struct/reference.py' 2023-03-18T11:50:10,529 adding 'pyobo/struct/struct.py' 2023-03-18T11:50:10,531 adding 'pyobo/struct/typedef.py' 2023-03-18T11:50:10,533 adding 'pyobo/struct/utils.py' 2023-03-18T11:50:10,534 adding 'pyobo/utils/__init__.py' 2023-03-18T11:50:10,536 adding 'pyobo/utils/cache.py' 2023-03-18T11:50:10,538 adding 'pyobo/utils/io.py' 2023-03-18T11:50:10,539 adding 'pyobo/utils/iter.py' 2023-03-18T11:50:10,541 adding 'pyobo/utils/misc.py' 2023-03-18T11:50:10,542 adding 'pyobo/utils/ndex_utils.py' 2023-03-18T11:50:10,543 adding 'pyobo/utils/path.py' 2023-03-18T11:50:10,545 adding 'pyobo/xrefdb/__init__.py' 2023-03-18T11:50:10,547 adding 'pyobo/xrefdb/bengo.py' 2023-03-18T11:50:10,548 adding 'pyobo/xrefdb/canonicalizer.py' 2023-03-18T11:50:10,550 adding 'pyobo/xrefdb/priority.py' 2023-03-18T11:50:10,551 adding 'pyobo/xrefdb/xrefs_pipeline.py' 2023-03-18T11:50:10,554 adding 'pyobo/xrefdb/sources/__init__.py' 2023-03-18T11:50:10,555 adding 'pyobo/xrefdb/sources/biomappings.py' 2023-03-18T11:50:10,556 adding 'pyobo/xrefdb/sources/cbms2019.py' 2023-03-18T11:50:10,558 adding 'pyobo/xrefdb/sources/chembl.py' 2023-03-18T11:50:10,559 adding 'pyobo/xrefdb/sources/compath.py' 2023-03-18T11:50:10,561 adding 'pyobo/xrefdb/sources/famplex.py' 2023-03-18T11:50:10,562 adding 'pyobo/xrefdb/sources/gilda.py' 2023-03-18T11:50:10,564 adding 'pyobo/xrefdb/sources/intact.py' 2023-03-18T11:50:10,565 adding 'pyobo/xrefdb/sources/ncit.py' 2023-03-18T11:50:10,566 adding 'pyobo/xrefdb/sources/pubchem.py' 2023-03-18T11:50:10,568 adding 'pyobo/xrefdb/sources/wikidata.py' 2023-03-18T11:50:10,570 adding 'pyobo-0.8.13.dist-info/LICENSE' 2023-03-18T11:50:10,573 adding 'pyobo-0.8.13.dist-info/METADATA' 2023-03-18T11:50:10,574 adding 'pyobo-0.8.13.dist-info/WHEEL' 2023-03-18T11:50:10,575 adding 'pyobo-0.8.13.dist-info/entry_points.txt' 2023-03-18T11:50:10,576 adding 'pyobo-0.8.13.dist-info/top_level.txt' 2023-03-18T11:50:10,579 adding 'pyobo-0.8.13.dist-info/RECORD' 2023-03-18T11:50:10,892 removing build/bdist.linux-armv7l/wheel 2023-03-18T11:50:11,024 Building wheel for pyobo (pyproject.toml): finished with status 'done' 2023-03-18T11:50:11,534 Created wheel for pyobo: filename=pyobo-0.8.13-py3-none-any.whl size=23086653 sha256=132e4309b149f5b5c5a5d6a6f68af47f4d3214a73e3dc124906e2f7c1bef8c79 2023-03-18T11:50:11,535 Stored in directory: /tmp/pip-ephem-wheel-cache-xtztx738/wheels/b4/2b/f6/28c3f8c9cbe9f4c8eaa0f42dc1785c7090a95adebbc66b7aa0 2023-03-18T11:50:11,566 Successfully built pyobo 2023-03-18T11:50:12,201 Removed build tracker: '/tmp/pip-build-tracker-2ztyz_ek'