2023-03-22T04:14:27,829 Created temporary directory: /tmp/pip-ephem-wheel-cache-kr_0sixc
2023-03-22T04:14:27,832 Created temporary directory: /tmp/pip-build-tracker-xjp3192s
2023-03-22T04:14:27,832 Initialized build tracking at /tmp/pip-build-tracker-xjp3192s
2023-03-22T04:14:27,832 Created build tracker: /tmp/pip-build-tracker-xjp3192s
2023-03-22T04:14:27,832 Entered build tracker: /tmp/pip-build-tracker-xjp3192s
2023-03-22T04:14:27,833 Created temporary directory: /tmp/pip-wheel-1ql24ert
2023-03-22T04:14:27,837 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-22T04:14:27,840 Created temporary directory: /tmp/pip-ephem-wheel-cache-d5tpi8ot
2023-03-22T04:14:27,869 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-22T04:14:27,873 2 location(s) to search for versions of ambermdrun:
2023-03-22T04:14:27,873 * https://pypi.org/simple/ambermdrun/
2023-03-22T04:14:27,873 * https://www.piwheels.org/simple/ambermdrun/
2023-03-22T04:14:27,873 Fetching project page and analyzing links: https://pypi.org/simple/ambermdrun/
2023-03-22T04:14:27,874 Getting page https://pypi.org/simple/ambermdrun/
2023-03-22T04:14:27,875 Found index url https://pypi.org/simple
2023-03-22T04:14:27,926 Fetched page https://pypi.org/simple/ambermdrun/ as application/vnd.pypi.simple.v1+json
2023-03-22T04:14:27,928   Found link https://files.pythonhosted.org/packages/d6/db/18b74901842877c76f511fc9f2a0ed7f2ac8a09b72bc8926a79aa8e3613d/AmberMDrun-0.0.1.tar.gz (from https://pypi.org/simple/ambermdrun/) (requires-python:>=3.6), version: 0.0.1
2023-03-22T04:14:27,929   Found link https://files.pythonhosted.org/packages/72/fa/7827263fc857e7ac22274ad3e8a13f417473309556ea106aed8ac61301b9/AmberMDrun-0.0.2.tar.gz (from https://pypi.org/simple/ambermdrun/) (requires-python:>=3.6), version: 0.0.2
2023-03-22T04:14:27,929 Fetching project page and analyzing links: https://www.piwheels.org/simple/ambermdrun/
2023-03-22T04:14:27,929 Getting page https://www.piwheels.org/simple/ambermdrun/
2023-03-22T04:14:27,930 Found index url https://www.piwheels.org/simple
2023-03-22T04:14:28,111 Fetched page https://www.piwheels.org/simple/ambermdrun/ as text/html
2023-03-22T04:14:28,113   Skipping link: No binaries permitted for ambermdrun: https://www.piwheels.org/simple/ambermdrun/AmberMDrun-0.0.1-cp39-cp39-linux_armv7l.whl#sha256=9d7e6f27bf8ed40c3dedf66ef4e92029d07387a88d52cc1879d0fb0cdceecb78 (from https://www.piwheels.org/simple/ambermdrun/) (requires-python:>=3.6)
2023-03-22T04:14:28,113   Skipping link: No binaries permitted for ambermdrun: https://www.piwheels.org/simple/ambermdrun/AmberMDrun-0.0.1-cp39-cp39-linux_armv6l.whl#sha256=9d7e6f27bf8ed40c3dedf66ef4e92029d07387a88d52cc1879d0fb0cdceecb78 (from https://www.piwheels.org/simple/ambermdrun/) (requires-python:>=3.6)
2023-03-22T04:14:28,113 Skipping link: not a file: https://www.piwheels.org/simple/ambermdrun/
2023-03-22T04:14:28,113 Skipping link: not a file: https://pypi.org/simple/ambermdrun/
2023-03-22T04:14:28,131 Given no hashes to check 1 links for project 'ambermdrun': discarding no candidates
2023-03-22T04:14:28,148 Collecting ambermdrun==0.0.2
2023-03-22T04:14:28,151   Created temporary directory: /tmp/pip-unpack-7m660lc9
2023-03-22T04:14:28,200   Downloading AmberMDrun-0.0.2.tar.gz (907 kB)
2023-03-22T04:14:29,083   Added ambermdrun==0.0.2 from https://files.pythonhosted.org/packages/72/fa/7827263fc857e7ac22274ad3e8a13f417473309556ea106aed8ac61301b9/AmberMDrun-0.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-xjp3192s'
2023-03-22T04:14:29,089   Created temporary directory: /tmp/pip-build-env-0yy80b6n
2023-03-22T04:14:29,102   Installing build dependencies: started
2023-03-22T04:14:29,103   Running command pip subprocess to install build dependencies
2023-03-22T04:14:30,376   Using pip 23.0.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2023-03-22T04:14:30,988   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-22T04:14:31,025   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-22T04:14:32,727   Collecting setuptools>=42
2023-03-22T04:14:32,888     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.6.0-py3-none-any.whl (1.1 MB)
2023-03-22T04:14:33,187   Collecting wheel
2023-03-22T04:14:33,230     Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB)
2023-03-22T04:14:33,583   Collecting ninja
2023-03-22T04:14:33,647     Using cached https://www.piwheels.org/simple/ninja/ninja-1.11.1-cp39-cp39-linux_armv7l.whl (132 kB)
2023-03-22T04:14:34,477   Collecting cmake>=3.12
2023-03-22T04:14:36,186     Using cached https://www.piwheels.org/simple/cmake/cmake-3.26.0-cp39-cp39-linux_armv7l.whl (17.6 MB)
2023-03-22T04:14:39,126   Installing collected packages: ninja, cmake, wheel, setuptools
2023-03-22T04:14:39,189     Creating /tmp/pip-build-env-0yy80b6n/overlay/bin
2023-03-22T04:14:39,191     changing mode of /tmp/pip-build-env-0yy80b6n/overlay/bin/ninja to 755
2023-03-22T04:14:45,911     changing mode of /tmp/pip-build-env-0yy80b6n/overlay/bin/cmake to 755
2023-03-22T04:14:45,914     changing mode of /tmp/pip-build-env-0yy80b6n/overlay/bin/cpack to 755
2023-03-22T04:14:45,916     changing mode of /tmp/pip-build-env-0yy80b6n/overlay/bin/ctest to 755
2023-03-22T04:14:46,226     changing mode of /tmp/pip-build-env-0yy80b6n/overlay/bin/wheel to 755
2023-03-22T04:14:48,515   Successfully installed cmake-3.26.0 ninja-1.11.1 setuptools-67.6.0 wheel-0.40.0
2023-03-22T04:14:49,061   Installing build dependencies: finished with status 'done'
2023-03-22T04:14:49,067   Getting requirements to build wheel: started
2023-03-22T04:14:49,068   Running command Getting requirements to build wheel
2023-03-22T04:14:49,652   running egg_info
2023-03-22T04:14:49,658   writing AmberMDrun.egg-info/PKG-INFO
2023-03-22T04:14:49,660   writing dependency_links to AmberMDrun.egg-info/dependency_links.txt
2023-03-22T04:14:49,662   writing entry points to AmberMDrun.egg-info/entry_points.txt
2023-03-22T04:14:49,664   writing requirements to AmberMDrun.egg-info/requires.txt
2023-03-22T04:14:49,665   writing top-level names to AmberMDrun.egg-info/top_level.txt
2023-03-22T04:14:49,691   reading manifest file 'AmberMDrun.egg-info/SOURCES.txt'
2023-03-22T04:14:49,742   reading manifest template 'MANIFEST.in'
2023-03-22T04:14:49,776   adding license file 'LICENSE'
2023-03-22T04:14:49,795   writing manifest file 'AmberMDrun.egg-info/SOURCES.txt'
2023-03-22T04:14:49,859   Getting requirements to build wheel: finished with status 'done'
2023-03-22T04:14:49,870   Created temporary directory: /tmp/pip-modern-metadata-gezzlf56
2023-03-22T04:14:49,873   Preparing metadata (pyproject.toml): started
2023-03-22T04:14:49,874   Running command Preparing metadata (pyproject.toml)
2023-03-22T04:14:50,407   running dist_info
2023-03-22T04:14:50,426   creating /tmp/pip-modern-metadata-gezzlf56/AmberMDrun.egg-info
2023-03-22T04:14:50,432   writing /tmp/pip-modern-metadata-gezzlf56/AmberMDrun.egg-info/PKG-INFO
2023-03-22T04:14:50,435   writing dependency_links to /tmp/pip-modern-metadata-gezzlf56/AmberMDrun.egg-info/dependency_links.txt
2023-03-22T04:14:50,437   writing entry points to /tmp/pip-modern-metadata-gezzlf56/AmberMDrun.egg-info/entry_points.txt
2023-03-22T04:14:50,439   writing requirements to /tmp/pip-modern-metadata-gezzlf56/AmberMDrun.egg-info/requires.txt
2023-03-22T04:14:50,440   writing top-level names to /tmp/pip-modern-metadata-gezzlf56/AmberMDrun.egg-info/top_level.txt
2023-03-22T04:14:50,441   writing manifest file '/tmp/pip-modern-metadata-gezzlf56/AmberMDrun.egg-info/SOURCES.txt'
2023-03-22T04:14:50,464   reading manifest file '/tmp/pip-modern-metadata-gezzlf56/AmberMDrun.egg-info/SOURCES.txt'
2023-03-22T04:14:50,467   reading manifest template 'MANIFEST.in'
2023-03-22T04:14:50,489   adding license file 'LICENSE'
2023-03-22T04:14:50,502   writing manifest file '/tmp/pip-modern-metadata-gezzlf56/AmberMDrun.egg-info/SOURCES.txt'
2023-03-22T04:14:50,504   creating '/tmp/pip-modern-metadata-gezzlf56/AmberMDrun-0.0.2.dist-info'
2023-03-22T04:14:50,677   Preparing metadata (pyproject.toml): finished with status 'done'
2023-03-22T04:14:50,684   Source in /tmp/pip-wheel-1ql24ert/ambermdrun_549a7eaf46024c1cbcc28e33dacfb20e has version 0.0.2, which satisfies requirement ambermdrun==0.0.2 from https://files.pythonhosted.org/packages/72/fa/7827263fc857e7ac22274ad3e8a13f417473309556ea106aed8ac61301b9/AmberMDrun-0.0.2.tar.gz
2023-03-22T04:14:50,685   Removed ambermdrun==0.0.2 from https://files.pythonhosted.org/packages/72/fa/7827263fc857e7ac22274ad3e8a13f417473309556ea106aed8ac61301b9/AmberMDrun-0.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-xjp3192s'
2023-03-22T04:14:50,690 Created temporary directory: /tmp/pip-unpack-1_0juopc
2023-03-22T04:14:50,691 Building wheels for collected packages: ambermdrun
2023-03-22T04:14:50,696   Created temporary directory: /tmp/pip-wheel-1chk7rgi
2023-03-22T04:14:50,696   Destination directory: /tmp/pip-wheel-1chk7rgi
2023-03-22T04:14:50,699   Building wheel for ambermdrun (pyproject.toml): started
2023-03-22T04:14:50,700   Running command Building wheel for ambermdrun (pyproject.toml)
2023-03-22T04:14:51,278   running bdist_wheel
2023-03-22T04:14:51,297   running build
2023-03-22T04:14:51,297   running build_py
2023-03-22T04:14:51,306   creating build
2023-03-22T04:14:51,306   creating build/lib.linux-armv7l-cpython-39
2023-03-22T04:14:51,307   creating build/lib.linux-armv7l-cpython-39/AmberMDrun
2023-03-22T04:14:51,309   copying AmberMDrun/equil.py -> build/lib.linux-armv7l-cpython-39/AmberMDrun
2023-03-22T04:14:51,311   copying AmberMDrun/version.py -> build/lib.linux-armv7l-cpython-39/AmberMDrun
2023-03-22T04:14:51,313   copying AmberMDrun/__init__.py -> build/lib.linux-armv7l-cpython-39/AmberMDrun
2023-03-22T04:14:51,315   copying AmberMDrun/pyamber.py -> build/lib.linux-armv7l-cpython-39/AmberMDrun
2023-03-22T04:14:51,317   copying AmberMDrun/main.py -> build/lib.linux-armv7l-cpython-39/AmberMDrun
2023-03-22T04:14:51,319   copying AmberMDrun/mmpbsa.py -> build/lib.linux-armv7l-cpython-39/AmberMDrun
2023-03-22T04:14:51,322   running build_ext
2023-03-22T04:14:51,942   -- The CXX compiler identification is GNU 10.2.1
2023-03-22T04:14:52,019   -- Detecting CXX compiler ABI info
2023-03-22T04:14:52,378   -- Detecting CXX compiler ABI info - done
2023-03-22T04:14:52,418   -- Check for working CXX compiler: /usr/bin/c++ - skipped
2023-03-22T04:14:52,420   -- Detecting CXX compile features
2023-03-22T04:14:52,423   -- Detecting CXX compile features - done
2023-03-22T04:14:52,435   -- current platform: Linux
2023-03-22T04:14:52,469   -- pybind11 v2.10.1
2023-03-22T04:14:52,539   -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6")
2023-03-22T04:14:53,079   -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so
2023-03-22T04:14:53,090   -- Performing Test HAS_FLTO
2023-03-22T04:14:53,521   -- Performing Test HAS_FLTO - Success
2023-03-22T04:14:53,528   -- Configuring done (2.1s)
2023-03-22T04:14:53,570   -- Generating done (0.0s)
2023-03-22T04:14:53,601   -- Build files have been written to: /tmp/pip-wheel-1ql24ert/ambermdrun_549a7eaf46024c1cbcc28e33dacfb20e/build/temp.linux-armv7l-cpython-39/AmberMDrun
2023-03-22T04:15:00,082   [1/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/common.cpp.o
2023-03-22T04:15:09,861   [2/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/SystemInfo.cpp.o
2023-03-22T04:15:18,120   [3/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/npt.cpp.o
2023-03-22T04:15:18,787   [4/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/gamd.cpp.o
2023-03-22T04:15:20,317   [5/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/base.cpp.o
2023-03-22T04:15:21,472   [6/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/format.cc.o
2023-03-22T04:15:21,931   [7/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/md.cpp.o
2023-03-22T04:15:23,889   [8/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/os.cc.o
2023-03-22T04:15:26,209   [9/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/nvt.cpp.o
2023-03-22T04:15:26,644   [10/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/min.cpp.o
2023-03-22T04:15:35,167   [11/16] Building CXX object AmberMDrun/CMakeFiles/amberMd.dir/main.cpp.o
2023-03-22T04:15:37,269   [12/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/smd.cpp.o
2023-03-22T04:15:37,470   [13/16] Linking CXX static library AmberMDrun/libambermd.a
2023-03-22T04:15:38,879   [14/16] Linking CXX executable AmberMDrun/amberMd
2023-03-22T04:15:44,392   [15/16] Building CXX object AmberMDrun/CMakeFiles/_pyamber.dir/pyamber.cpp.o
2023-03-22T04:16:04,230   [16/16] Linking CXX shared module /tmp/pip-wheel-1ql24ert/ambermdrun_549a7eaf46024c1cbcc28e33dacfb20e/build/lib.linux-armv7l-cpython-39/AmberMDrun/_pyamber.cpython-39-arm-linux-gnueabihf.so
2023-03-22T04:16:04,269   installing to build/bdist.linux-armv7l/wheel
2023-03-22T04:16:04,269   running install
2023-03-22T04:16:04,295   running install_lib
2023-03-22T04:16:04,305   creating build/bdist.linux-armv7l
2023-03-22T04:16:04,305   creating build/bdist.linux-armv7l/wheel
2023-03-22T04:16:04,307   creating build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-22T04:16:04,309   copying build/lib.linux-armv7l-cpython-39/AmberMDrun/equil.py -> build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-22T04:16:04,312   copying build/lib.linux-armv7l-cpython-39/AmberMDrun/version.py -> build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-22T04:16:04,314   copying build/lib.linux-armv7l-cpython-39/AmberMDrun/_pyamber.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-22T04:16:04,351   copying build/lib.linux-armv7l-cpython-39/AmberMDrun/__init__.py -> build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-22T04:16:04,353   copying build/lib.linux-armv7l-cpython-39/AmberMDrun/pyamber.py -> build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-22T04:16:04,356   copying build/lib.linux-armv7l-cpython-39/AmberMDrun/main.py -> build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-22T04:16:04,358   copying build/lib.linux-armv7l-cpython-39/AmberMDrun/mmpbsa.py -> build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-22T04:16:04,361   running install_egg_info
2023-03-22T04:16:04,390   running egg_info
2023-03-22T04:16:04,396   writing AmberMDrun.egg-info/PKG-INFO
2023-03-22T04:16:04,398   writing dependency_links to AmberMDrun.egg-info/dependency_links.txt
2023-03-22T04:16:04,400   writing entry points to AmberMDrun.egg-info/entry_points.txt
2023-03-22T04:16:04,402   writing requirements to AmberMDrun.egg-info/requires.txt
2023-03-22T04:16:04,403   writing top-level names to AmberMDrun.egg-info/top_level.txt
2023-03-22T04:16:04,413   reading manifest file 'AmberMDrun.egg-info/SOURCES.txt'
2023-03-22T04:16:04,468   reading manifest template 'MANIFEST.in'
2023-03-22T04:16:04,491   adding license file 'LICENSE'
2023-03-22T04:16:04,509   writing manifest file 'AmberMDrun.egg-info/SOURCES.txt'
2023-03-22T04:16:04,512   Copying AmberMDrun.egg-info to build/bdist.linux-armv7l/wheel/AmberMDrun-0.0.2-py3.9.egg-info
2023-03-22T04:16:04,527   running install_scripts
2023-03-22T04:16:04,575   creating build/bdist.linux-armv7l/wheel/AmberMDrun-0.0.2.dist-info/WHEEL
2023-03-22T04:16:04,578   creating '/tmp/pip-wheel-1chk7rgi/.tmp-rat1m5ot/AmberMDrun-0.0.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-03-22T04:16:04,581   adding 'AmberMDrun/__init__.py'
2023-03-22T04:16:04,875   adding 'AmberMDrun/_pyamber.cpython-39-arm-linux-gnueabihf.so'
2023-03-22T04:16:04,888   adding 'AmberMDrun/equil.py'
2023-03-22T04:16:04,889   adding 'AmberMDrun/main.py'
2023-03-22T04:16:04,891   adding 'AmberMDrun/mmpbsa.py'
2023-03-22T04:16:04,893   adding 'AmberMDrun/pyamber.py'
2023-03-22T04:16:04,895   adding 'AmberMDrun/version.py'
2023-03-22T04:16:04,897   adding 'AmberMDrun-0.0.2.dist-info/LICENSE'
2023-03-22T04:16:04,899   adding 'AmberMDrun-0.0.2.dist-info/METADATA'
2023-03-22T04:16:04,900   adding 'AmberMDrun-0.0.2.dist-info/WHEEL'
2023-03-22T04:16:04,901   adding 'AmberMDrun-0.0.2.dist-info/entry_points.txt'
2023-03-22T04:16:04,903   adding 'AmberMDrun-0.0.2.dist-info/top_level.txt'
2023-03-22T04:16:04,904   adding 'AmberMDrun-0.0.2.dist-info/RECORD'
2023-03-22T04:16:04,915   removing build/bdist.linux-armv7l/wheel
2023-03-22T04:16:05,001   Building wheel for ambermdrun (pyproject.toml): finished with status 'done'
2023-03-22T04:16:05,026   Created wheel for ambermdrun: filename=AmberMDrun-0.0.2-cp39-cp39-linux_armv7l.whl size=590727 sha256=102c06dbbc37b52bacdbde48fd118a1e26403955f46644e6bcd94ddcc27f5df7
2023-03-22T04:16:05,027   Stored in directory: /tmp/pip-ephem-wheel-cache-d5tpi8ot/wheels/e9/49/41/6400694c005b319b3ce4e252e5153ef1c902c889081e849fc0
2023-03-22T04:16:05,039 Successfully built ambermdrun
2023-03-22T04:16:05,065 Removed build tracker: '/tmp/pip-build-tracker-xjp3192s'