2023-03-23T04:01:31,433 Created temporary directory: /tmp/pip-ephem-wheel-cache-rfr23mfs
2023-03-23T04:01:31,439 Created temporary directory: /tmp/pip-build-tracker-91e723fh
2023-03-23T04:01:31,440 Initialized build tracking at /tmp/pip-build-tracker-91e723fh
2023-03-23T04:01:31,440 Created build tracker: /tmp/pip-build-tracker-91e723fh
2023-03-23T04:01:31,440 Entered build tracker: /tmp/pip-build-tracker-91e723fh
2023-03-23T04:01:31,441 Created temporary directory: /tmp/pip-wheel-w7khrmbp
2023-03-23T04:01:31,452 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-23T04:01:31,458 Created temporary directory: /tmp/pip-ephem-wheel-cache-95kl8bru
2023-03-23T04:01:31,510 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-23T04:01:31,517 2 location(s) to search for versions of gtdbtk:
2023-03-23T04:01:31,517 * https://pypi.org/simple/gtdbtk/
2023-03-23T04:01:31,517 * https://www.piwheels.org/simple/gtdbtk/
2023-03-23T04:01:31,518 Fetching project page and analyzing links: https://pypi.org/simple/gtdbtk/
2023-03-23T04:01:31,519 Getting page https://pypi.org/simple/gtdbtk/
2023-03-23T04:01:31,523 Found index url https://pypi.org/simple
2023-03-23T04:01:31,707 Fetched page https://pypi.org/simple/gtdbtk/ as application/vnd.pypi.simple.v1+json
2023-03-23T04:01:31,741   Found link https://files.pythonhosted.org/packages/77/1d/a47e727062761ea6108b1be340d24c711131df11415d82cdb30bcb51738b/gtdbtk-0.0.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.1
2023-03-23T04:01:31,742   Found link https://files.pythonhosted.org/packages/78/fc/021b3e4fc9fc1a8d8596ccf703ee4f5abd97b496bc714a9bfc69332e913e/gtdbtk-0.0.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.2
2023-03-23T04:01:31,743   Found link https://files.pythonhosted.org/packages/b8/55/a62d05d6a2d35a6e9f2247586a77f8033eaeeffb8e8d4db6511252c8a59b/gtdbtk-0.0.3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.3
2023-03-23T04:01:31,744   Found link https://files.pythonhosted.org/packages/88/3d/2dedbfdce682d2c73aebb1182835889222aecefac4072e205e885b601be5/gtdbtk-0.0.4b0.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b0
2023-03-23T04:01:31,745   Found link https://files.pythonhosted.org/packages/e7/21/7b30d68267c9ed81610a37c8fdac4b53f7090f9511d963a54754ec49d521/gtdbtk-0.0.4b1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b1
2023-03-23T04:01:31,745   Found link https://files.pythonhosted.org/packages/d1/f0/970559d46438a2004ccaa4199491188afc1bb13304fb899b26a3530ed841/gtdbtk-0.0.4b2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b2
2023-03-23T04:01:31,746   Found link https://files.pythonhosted.org/packages/e0/47/a9610df19e2bcf2782fc1ee29e5f85452b20a22d6f80581a23e3c0111c52/gtdbtk-0.0.4b3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b3
2023-03-23T04:01:31,747   Found link https://files.pythonhosted.org/packages/bf/f1/ebd7ba5d9ac68fc00ec0f7a69b52111d945a70f836dd4ba975600b088a98/gtdbtk-0.0.5.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.5
2023-03-23T04:01:31,747   Found link https://files.pythonhosted.org/packages/ca/7c/fc51570da6722bd31e310bb1ac218cb9d839dfae5d5e94d0ea3666402812/gtdbtk-0.0.6.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.6
2023-03-23T04:01:31,748   Found link https://files.pythonhosted.org/packages/68/72/fdfc81336d6a94e8f286f562bc265e5d215f653f5d08d91689b6cb69a6cb/gtdbtk-0.0.7.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.7
2023-03-23T04:01:31,749   Found link https://files.pythonhosted.org/packages/00/bb/2c2c4a00d4ca637be0daa7ac6bca99011afa8c42de7148c4e5dd6fc28141/gtdbtk-0.0.8b1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.8b1
2023-03-23T04:01:31,750   Found link https://files.pythonhosted.org/packages/c0/3e/4a7f207340198fb69fe0764236f9cfb562840796cca457317024f1bcfb65/gtdbtk-0.1.0.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.0
2023-03-23T04:01:31,750   Found link https://files.pythonhosted.org/packages/5f/c1/f028b36863e2b27d0a4191f4033eec25cfff898abceb97b0ccfa1352e1f0/gtdbtk-0.1.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.1
2023-03-23T04:01:31,751   Found link https://files.pythonhosted.org/packages/1f/40/6a7cae5b58902ff5add1db17bf0dd24857bfedacd73f47096e3ef5789899/gtdbtk-0.1.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.2
2023-03-23T04:01:31,752   Found link https://files.pythonhosted.org/packages/e4/e7/481464381afdf57da5e920a1713a73627373583c57d292ad7155e8b4f32c/gtdbtk-0.1.3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.3
2023-03-23T04:01:31,753   Found link https://files.pythonhosted.org/packages/29/6d/e9dc39898e8cc79fe54b5109ca7ed03842bcab51368cc6dbf05c2b2c6f39/gtdbtk-0.1.6.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.6
2023-03-23T04:01:31,753   Found link https://files.pythonhosted.org/packages/db/c8/b052434152065efc0d209401041a7f7ba51c153832f4fe0a424fe0990cfa/gtdbtk-0.2.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.2.1
2023-03-23T04:01:31,754   Found link https://files.pythonhosted.org/packages/0a/74/8cbe8afea3aa0f7d6b948210b8937f3edcf541b3212cae2ce6aa560276a9/gtdbtk-0.2.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.2.2
2023-03-23T04:01:31,755   Found link https://files.pythonhosted.org/packages/45/de/019db6634299b4086a49646891c9e99347e2908713baa14641e15687e4af/gtdbtk-0.3.0.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.0
2023-03-23T04:01:31,755   Found link https://files.pythonhosted.org/packages/6e/46/14181ed7f443fd8f70353250d09c94d2a2d867e68cc687167a8546ef4926/gtdbtk-0.3.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.1
2023-03-23T04:01:31,756   Found link https://files.pythonhosted.org/packages/91/64/06be7ada30b1895a1205feac310a92929a5e135b5821036632aa36d1354c/gtdbtk-0.3.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.2
2023-03-23T04:01:31,757   Found link https://files.pythonhosted.org/packages/7d/90/a62620e2c5c5799d0271f097a83c356dd7d458bf85651da24a353e93d669/gtdbtk-0.3.3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.3
2023-03-23T04:01:31,758   Found link https://files.pythonhosted.org/packages/48/b3/ce025d246df8196fbb18ac4ef9b3f09b430d8a71627b3b49dd7f33647b95/gtdbtk-1.0.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.0.0
2023-03-23T04:01:31,760   Found link https://files.pythonhosted.org/packages/87/bc/dcfb65d65adda7952adf9251cb7e86c2cc3143804932d2a6cbdc04f4249e/gtdbtk-1.0.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.0.1
2023-03-23T04:01:31,761   Found link https://files.pythonhosted.org/packages/cd/3b/c70443baef1058d1955bfe476d521a4ad423958bf349527cf75cb3e892a5/gtdbtk-1.0.2.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.0.2
2023-03-23T04:01:31,762   Found link https://files.pythonhosted.org/packages/f0/28/78411977ec02799a3a16a08ba9ea036851fd23d26126a583d7a4dbd7e129/gtdbtk-1.1.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.1.0
2023-03-23T04:01:31,764   Found link https://files.pythonhosted.org/packages/68/d0/bcdb38880ed7e0d0ae563c62b1f192b1d77a35a0d00b193f9e5a01817454/gtdbtk-1.1.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.1.1
2023-03-23T04:01:31,765   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/f3/56/60ff2a296580b4e5741592ad17ca874ba024f7f5c9c225d7cadfb9cfd54f/gtdbtk-1.2.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,766   Found link https://files.pythonhosted.org/packages/fd/9d/2060d8cdefde94050a969360e8b1343d6c441b35f57ca3000ec2b8c0c950/gtdbtk-1.2.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.2.0
2023-03-23T04:01:31,767   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/ef/47/293fd1fa9548d876d0da7f2a99a3784614850d84f9667dc08c1d28a50737/gtdbtk-1.3.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,768   Found link https://files.pythonhosted.org/packages/f0/bf/775eb9ba5e42ab33977228a3121db7f66c8b8ac422e0c8df7a51e14410b3/gtdbtk-1.3.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.3.0
2023-03-23T04:01:31,769   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/b9/4c/21a649b385d9c95f1da010261b1160334907d6192248b5b42ff2ebdafeb7/gtdbtk-1.4.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,770   Found link https://files.pythonhosted.org/packages/b7/6e/ff1416c31ab6b7034ac774ebe49b840e10f5ca1fd6469dc2e6b784718aeb/gtdbtk-1.4.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.4.0
2023-03-23T04:01:31,771   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/57/13/fc0f865fde7d1732821f7fde3f5ba91081128691bfb31420e1cc580f4cef/gtdbtk-1.4.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,772   Found link https://files.pythonhosted.org/packages/a0/e4/c7425e61d690b4eb1d04b586a76b760b11e1be576d0d2baacf0d7b341d21/gtdbtk-1.4.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.4.1
2023-03-23T04:01:31,773   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/50/13/0a4cca6299f809c1c0e760c735053137c3a4aff2b646b91b121e203203ee/gtdbtk-1.5.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,774   Found link https://files.pythonhosted.org/packages/e7/df/64901f44cf635a6bbed28f66a13c7dbe0ac4c29afc28e07cd5d9b1730efe/gtdbtk-1.5.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.5.0
2023-03-23T04:01:31,775   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/f3/17/383985ce3c67ab7c7d83753cc6792f4ddbce4c7bc5728765c9000b116962/gtdbtk-1.5.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,776   Found link https://files.pythonhosted.org/packages/46/7d/42643d2bed1eb3406a32c8cedd4be15aa03a47a29d09c2be1498b0602428/gtdbtk-1.5.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.5.1
2023-03-23T04:01:31,776   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/34/43/30519d579e26c5b2bf8370bcdc49e4b7805bf0445b766f54459e2fa1560c/gtdbtk-1.6.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,778   Found link https://files.pythonhosted.org/packages/e5/0b/c809fdd5da93a76edcb388c8ce5bf0f9836df548fb5e73c1bd4a90de0c3c/gtdbtk-1.6.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.6.0
2023-03-23T04:01:31,779   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/4a/cc/631e798a8f921fc6c504591472e34a04c2868f7ce7fdfc1b3c1cb5a81c05/gtdbtk-1.7.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,780   Found link https://files.pythonhosted.org/packages/a0/eb/859b20c3adeb96ca72f242bc31cd30319c2bd6e4d130c13aba0b76d2fe34/gtdbtk-1.7.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.7.0
2023-03-23T04:01:31,780   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/c5/ac/fd59f08a268eab7c094ee1e9b14004c591c3477b11628c9e08aaad2bbaa6/gtdbtk-2.0.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,782   Found link https://files.pythonhosted.org/packages/7e/43/9b3c861f07fa420e9595fdf5f2261c0d1519a01f9e994b6445fb2e263d98/gtdbtk-2.0.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.0.0
2023-03-23T04:01:31,782   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/b8/78/853a62dd98c99a31191df3f6d130834cad0ae00c5159d32cb9667af48943/gtdbtk-2.1.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,784   Found link https://files.pythonhosted.org/packages/5b/b7/6bc0bb66462d3b669ee1e5d39234efec662eed17ea2afa11df918dbe2552/gtdbtk-2.1.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.1.0
2023-03-23T04:01:31,784   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/b9/f4/afbebf8c28c3717584100d8d8d924259314c972abb581d2eb0424a021517/gtdbtk-2.1.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,786   Found link https://files.pythonhosted.org/packages/71/9a/ae98b3aca31a1106fbcf01b4567184e6a8fa5abbb74749e287c3f5238ad8/gtdbtk-2.1.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.1.1
2023-03-23T04:01:31,786   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/30/e5/e497c084510ce4c0898ddb2df2f7d938b5d63de0e26cb42f11600c0c9559/gtdbtk-2.2.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,788   Found link https://files.pythonhosted.org/packages/6d/d7/60f98a610b01d35736088897697c538bbe2f83aa091e6d5cca1a84122ad0/gtdbtk-2.2.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.0
2023-03-23T04:01:31,788   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/3c/ad/d6016544dd8d2dc164569b328307dc09e7029112016b87941180cd3fd3e3/gtdbtk-2.2.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,790   Found link https://files.pythonhosted.org/packages/9c/ce/b46fe9815e149aa238471118f5ffb50d67eab2b4c8a94d1fe3a480052166/gtdbtk-2.2.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.1
2023-03-23T04:01:31,790   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/48/bc/6f4c477f7fe9d4d67abd5a2843c88533570cd482a63e35c1f2589393126f/gtdbtk-2.2.2-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,792   Found link https://files.pythonhosted.org/packages/ee/bb/539be0884928b9906f9a4ffb0118e4501f6f203afda9fe1a5c40b231d150/gtdbtk-2.2.2.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.2
2023-03-23T04:01:31,792   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/02/43/0ba90c5591bea3ec5f2340724f0b5a12da4fe2cebe5a79022be66b406917/gtdbtk-2.2.3-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,794   Found link https://files.pythonhosted.org/packages/51/6d/8a161d447e0d3db86dffe2c684272be3969254b056ef819a270a10e5bdbd/gtdbtk-2.2.3.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.3
2023-03-23T04:01:31,794   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/a5/32/24f75f992865e4e5c761bb04a48ebc510dd91b9f04d5f1424eb5e4161ac4/gtdbtk-2.2.4-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,795   Found link https://files.pythonhosted.org/packages/70/ee/8ae2325f1f084a901575e9dffe8c8e7dae4bb89df809858983281177c0d1/gtdbtk-2.2.4.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.4
2023-03-23T04:01:31,796   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/55/a0/82538604d4f39129c5632cf6d8b26a4b2993e9fd4fecc5f8ca6f0a118be0/gtdbtk-2.2.5-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,798   Found link https://files.pythonhosted.org/packages/29/7b/3aed07a21e615b1b3f0a2fbcf8c7032ffe50d45fd4ffba50f59a12aab20f/gtdbtk-2.2.5.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.5
2023-03-23T04:01:31,798   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/f6/a2/877a99121b5cc2071ef2cff154c037418df0dce5d4512ed5eebcac3adff1/gtdbtk-2.2.6-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:31,800   Found link https://files.pythonhosted.org/packages/43/1d/f650449e249a128023732c98dc8f570d4033d52b81d64e442c0ea49175cc/gtdbtk-2.2.6.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.6
2023-03-23T04:01:31,801 Fetching project page and analyzing links: https://www.piwheels.org/simple/gtdbtk/
2023-03-23T04:01:31,801 Getting page https://www.piwheels.org/simple/gtdbtk/
2023-03-23T04:01:31,804 Found index url https://www.piwheels.org/simple
2023-03-23T04:01:32,011 Fetched page https://www.piwheels.org/simple/gtdbtk/ as text/html
2023-03-23T04:01:32,044   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.5-py3-none-any.whl#sha256=373f24c03ca4a533fc30378cc753ef810c9943df2fe1f361d39b11133869f81e (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,045   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.4-py3-none-any.whl#sha256=f20682a7cd468122eebde8ada2d62256fda4c792fb24359eb3cec4802065cfb3 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,045   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.3-py3-none-any.whl#sha256=06f93a7c81ad0d432168b3c6813c6b41c6c62c8c772d3f5a3f7a07026002e417 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,046   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.2-py3-none-any.whl#sha256=b2a2470befeb113d05b7e439d383b55fa4a7bf604d4de4b947eceb0cdd11feb9 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,046   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.1-py3-none-any.whl#sha256=2cf336d7981cf9e722bb1ab210ad70a0fdc421364d66f121ba0ed2764f49d831 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,047   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.1.1-py3-none-any.whl#sha256=9ab09353c8901bf41d042f5dd678b8e4a0b44bd88b9edf99c113095e719fa689 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,047   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.1.0-py3-none-any.whl#sha256=1a3aba4f0aa3916d66fa1b335bc75f3e4275f208aabcf8f52b16cc31c8a28251 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,048   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.0.0-py3-none-any.whl#sha256=3f62231589bd3b33d50492de0f098ded08e2d24736ebe3517140beffd23c6095 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,048   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.7.0-py3-none-any.whl#sha256=1cec9664f2cdcf1d97bc8eb584bfc3973bd54674846aa4af6320e2db8866e97d (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,049   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.6.0-py3-none-any.whl#sha256=b5a207597ad94381e816d097e1e1925df4e5570643272ed7b76db5dd3001ebde (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,049   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.5.1-py3-none-any.whl#sha256=ed5d3a99e31ba670781bfdc0b376d6269e1d683d7385d3508bdfd574f1a16b5c (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,050   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.5.0-py3-none-any.whl#sha256=4d5f2ecca5c2f1e7b279ff1bba63edd378e64f1195c8da6f8d2fe1c37bb1a02e (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,050   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.4.1-py3-none-any.whl#sha256=5bf60e34c9532ee96689ca34330f5f4ad6d344bac28ebdd1925ee4d0326e4345 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,051   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.4.0-py3-none-any.whl#sha256=ead9eb6d9df9b31e5b067e8f9993ef52975d454ab8685e1df66d9e201ac5c596 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,052   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.3.0-py3-none-any.whl#sha256=d7e3fccd83e155a4c737695d252e66a9076b236bed81fc4c193646bd2888ea79 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,052   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.2.0-py3-none-any.whl#sha256=6f16eed44889ee0d388564ccd30cce43c7059cb71fea4178339085d5cda33d84 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,053   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.1.1-py3-none-any.whl#sha256=6015c83a790205e33f5f1a6b18e6dc3f59ed21785e21e2335e333d2a0c2b6149 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,053   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.1.0-py3-none-any.whl#sha256=74644ddd23fa626c60834924b75ff2461cfe146825dfe8cb56ba7aa87f80065c (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,054   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.0.2-py3-none-any.whl#sha256=bcb2aff77a5de8e7ee657b155c07cef65e54ed4c69e75f792746eeb1a116d7d8 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,054   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.0.1-py3-none-any.whl#sha256=4f17b5e884096c03286b38720b63f262572ca3f8c6fcce36fb3a543aa1c45840 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,055   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.0.0-py3-none-any.whl#sha256=3206ab5f69c97d1c89cea39475c4e02c9af7414d02575fde530a36c099cb8f23 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2023-03-23T04:01:32,055   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.3-py3-none-any.whl#sha256=053ec454ce316e998d7be98ccd60e1e66e3a77dec93328e15b07f05ad137b0a6 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,056   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.2-py3-none-any.whl#sha256=083ef29deb14040d3795f158fa610a234aabb50077070bbe5a4f4daf32ba70a7 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,057   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.1-py3-none-any.whl#sha256=7c6b5d5774b8c786683f0843a0d30b610640a0ae08e45dac6d1ee6a6145ea7ba (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,057   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.0-py3-none-any.whl#sha256=967042d7d0fb425c296cb4370268936f5efab1086c93bba32aa75b05eb61d5eb (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,058   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.2.2-py3-none-any.whl#sha256=0f2f51b4c73c58071c0e693201460c6b3d67d4a956368ed7b2df1555a9a2d5e3 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,058   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.2.1-py3-none-any.whl#sha256=c3dda689b923a8788e648223335928c657b054fecd8eeb78e5e48e7be5cd3df4 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,059   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.6-py3-none-any.whl#sha256=dd5a03ce2b22ffe66b776fb405e95f4f7a70fed4ba1a7087db1de973f4e22fef (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,059   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.3-py3-none-any.whl#sha256=02c694c6199f0c5db1056131515f4272e703ea6beceffb16678ad3eb24358d8d (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,060   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.2-py3-none-any.whl#sha256=4b75117a7c332187dfb858bffe54fbadf2a9f39960fcc21d2bce0db59b6e114d (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,060   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.1-py3-none-any.whl#sha256=c971843754fb3c11f48ead52c04bc7bd86ddeab289fd362e9e24a9c0fd1f2879 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,061   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.0-py3-none-any.whl#sha256=3133231730578803c78146b89d575c44b9ac4419b598cbb7a3178c13e5175428 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,061   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.8b1-py3-none-any.whl#sha256=f8404616952a9ef6a46543f35e0263365db7dde0f1010383871c30b5db9fc8db (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,062   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.7-py3-none-any.whl#sha256=ff0ee32028021f53551b42ec4d3ddd9e5f3f046795606fc0612f232672e7bbf4 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,062   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.6-py3-none-any.whl#sha256=ed899d29852d0a5921b1d5319f20e5f5b827f30d0a14fd5afa37e9a4eb02f745 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,063   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.5-py3-none-any.whl#sha256=ae582d50ba58fd74c73ec1a0a37f427d3343e9f20fe45389ee098ed5ef99e3f4 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,063   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b3-py3-none-any.whl#sha256=2d5b93346985d7186695de6a4dc010b9abf4e108ec438f449b74705eb7191fc1 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,064   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b2-py3-none-any.whl#sha256=177fdc2bb5e28ee60a931441956acff6b853871395a611bc1404c7f78a2a3f85 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,064   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b1-py3-none-any.whl#sha256=cffebc36f92b7947522a0e8d0fe11d9a7051a036352eb036ca90db5a14e591e1 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,065   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b0-py3-none-any.whl#sha256=1a96ec79753b589c69bb9c881bdedfc0aef683779cb926da47f22e85e77bb203 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,066   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.3-py3-none-any.whl#sha256=6670c151da83c393482600e07c463c74de77ab5776f88a4978d1b7defa71f852 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,066   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.2-py3-none-any.whl#sha256=dac945e10b775b7c8ab5f5b16635bd016d17aacb8a4ad77708ce67dc1b3f3ed6 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,067   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.1-py3-none-any.whl#sha256=05d5353a17e20d9bc2a38528bb3b2e2e28d3188d4ebf69192793cd3e0d5199e6 (from https://www.piwheels.org/simple/gtdbtk/)
2023-03-23T04:01:32,067 Skipping link: not a file: https://www.piwheels.org/simple/gtdbtk/
2023-03-23T04:01:32,068 Skipping link: not a file: https://pypi.org/simple/gtdbtk/
2023-03-23T04:01:32,117 Given no hashes to check 1 links for project 'gtdbtk': discarding no candidates
2023-03-23T04:01:32,148 Collecting gtdbtk==2.2.6
2023-03-23T04:01:32,152   Created temporary directory: /tmp/pip-unpack-1ta8cwka
2023-03-23T04:01:32,585   Downloading gtdbtk-2.2.6.tar.gz (1.7 MB)
2023-03-23T04:01:34,139   Added gtdbtk==2.2.6 from https://files.pythonhosted.org/packages/43/1d/f650449e249a128023732c98dc8f570d4033d52b81d64e442c0ea49175cc/gtdbtk-2.2.6.tar.gz to build tracker '/tmp/pip-build-tracker-91e723fh'
2023-03-23T04:01:34,142   Running setup.py (path:/tmp/pip-wheel-w7khrmbp/gtdbtk_1eec74fcd35f4a6196418e1203bfe4a5/setup.py) egg_info for package gtdbtk
2023-03-23T04:01:34,143   Created temporary directory: /tmp/pip-pip-egg-info-27y6b0q8
2023-03-23T04:01:34,144   Preparing metadata (setup.py): started
2023-03-23T04:01:34,146   Running command python setup.py egg_info
2023-03-23T04:01:36,096   running egg_info
2023-03-23T04:01:36,099   creating /tmp/pip-pip-egg-info-27y6b0q8/gtdbtk.egg-info
2023-03-23T04:01:36,203   writing /tmp/pip-pip-egg-info-27y6b0q8/gtdbtk.egg-info/PKG-INFO
2023-03-23T04:01:36,208   writing dependency_links to /tmp/pip-pip-egg-info-27y6b0q8/gtdbtk.egg-info/dependency_links.txt
2023-03-23T04:01:36,212   writing entry points to /tmp/pip-pip-egg-info-27y6b0q8/gtdbtk.egg-info/entry_points.txt
2023-03-23T04:01:36,214   writing requirements to /tmp/pip-pip-egg-info-27y6b0q8/gtdbtk.egg-info/requires.txt
2023-03-23T04:01:36,217   writing top-level names to /tmp/pip-pip-egg-info-27y6b0q8/gtdbtk.egg-info/top_level.txt
2023-03-23T04:01:36,219   writing manifest file '/tmp/pip-pip-egg-info-27y6b0q8/gtdbtk.egg-info/SOURCES.txt'
2023-03-23T04:01:36,476   reading manifest file '/tmp/pip-pip-egg-info-27y6b0q8/gtdbtk.egg-info/SOURCES.txt'
2023-03-23T04:01:36,504   adding license file 'LICENSE'
2023-03-23T04:01:36,517   writing manifest file '/tmp/pip-pip-egg-info-27y6b0q8/gtdbtk.egg-info/SOURCES.txt'
2023-03-23T04:01:36,635   Preparing metadata (setup.py): finished with status 'done'
2023-03-23T04:01:36,649   Source in /tmp/pip-wheel-w7khrmbp/gtdbtk_1eec74fcd35f4a6196418e1203bfe4a5 has version 2.2.6, which satisfies requirement gtdbtk==2.2.6 from https://files.pythonhosted.org/packages/43/1d/f650449e249a128023732c98dc8f570d4033d52b81d64e442c0ea49175cc/gtdbtk-2.2.6.tar.gz
2023-03-23T04:01:36,650   Removed gtdbtk==2.2.6 from https://files.pythonhosted.org/packages/43/1d/f650449e249a128023732c98dc8f570d4033d52b81d64e442c0ea49175cc/gtdbtk-2.2.6.tar.gz from build tracker '/tmp/pip-build-tracker-91e723fh'
2023-03-23T04:01:36,666 Created temporary directory: /tmp/pip-unpack-0nzr00_y
2023-03-23T04:01:36,668 Building wheels for collected packages: gtdbtk
2023-03-23T04:01:36,676   Created temporary directory: /tmp/pip-wheel-plcxn_85
2023-03-23T04:01:36,677   Building wheel for gtdbtk (setup.py): started
2023-03-23T04:01:36,679   Destination directory: /tmp/pip-wheel-plcxn_85
2023-03-23T04:01:36,679   Running command python setup.py bdist_wheel
2023-03-23T04:01:38,703   running bdist_wheel
2023-03-23T04:01:39,425   running build
2023-03-23T04:01:39,426   running build_py
2023-03-23T04:01:39,491   creating build
2023-03-23T04:01:39,492   creating build/lib
2023-03-23T04:01:39,493   creating build/lib/gtdbtk
2023-03-23T04:01:39,495   copying gtdbtk/main.py -> build/lib/gtdbtk
2023-03-23T04:01:39,502   copying gtdbtk/markers.py -> build/lib/gtdbtk
2023-03-23T04:01:39,508   copying gtdbtk/misc.py -> build/lib/gtdbtk
2023-03-23T04:01:39,513   copying gtdbtk/decorate.py -> build/lib/gtdbtk
2023-03-23T04:01:39,518   copying gtdbtk/classify.py -> build/lib/gtdbtk
2023-03-23T04:01:39,529   copying gtdbtk/ani_screen.py -> build/lib/gtdbtk
2023-03-23T04:01:39,534   copying gtdbtk/reroot_tree.py -> build/lib/gtdbtk
2023-03-23T04:01:39,538   copying gtdbtk/ani_rep.py -> build/lib/gtdbtk
2023-03-23T04:01:39,544   copying gtdbtk/relative_distance.py -> build/lib/gtdbtk
2023-03-23T04:01:39,549   copying gtdbtk/cli.py -> build/lib/gtdbtk
2023-03-23T04:01:39,554   copying gtdbtk/__init__.py -> build/lib/gtdbtk
2023-03-23T04:01:39,558   copying gtdbtk/exceptions.py -> build/lib/gtdbtk
2023-03-23T04:01:39,562   copying gtdbtk/__main__.py -> build/lib/gtdbtk
2023-03-23T04:01:39,566   copying gtdbtk/infer_ranks.py -> build/lib/gtdbtk
2023-03-23T04:01:39,570   copying gtdbtk/split.py -> build/lib/gtdbtk
2023-03-23T04:01:39,575   copying gtdbtk/trim_msa.py -> build/lib/gtdbtk
2023-03-23T04:01:39,580   copying gtdbtk/tools.py -> build/lib/gtdbtk
2023-03-23T04:01:39,586   creating build/lib/tests
2023-03-23T04:01:39,588   copying tests/test_cli.py -> build/lib/tests
2023-03-23T04:01:39,593   copying tests/common.py -> build/lib/tests
2023-03-23T04:01:39,597   copying tests/test_classify.py -> build/lib/tests
2023-03-23T04:01:39,601   copying tests/__init__.py -> build/lib/tests
2023-03-23T04:01:39,605   creating build/lib/gtdbtk/model
2023-03-23T04:01:39,607   copying gtdbtk/model/enum.py -> build/lib/gtdbtk/model
2023-03-23T04:01:39,610   copying gtdbtk/model/__init__.py -> build/lib/gtdbtk/model
2023-03-23T04:01:39,615   creating build/lib/gtdbtk/biolib_lite
2023-03-23T04:01:39,617   copying gtdbtk/biolib_lite/taxonomy.py -> build/lib/gtdbtk/biolib_lite
2023-03-23T04:01:39,623   copying gtdbtk/biolib_lite/common.py -> build/lib/gtdbtk/biolib_lite
2023-03-23T04:01:39,627   copying gtdbtk/biolib_lite/parallel.py -> build/lib/gtdbtk/biolib_lite
2023-03-23T04:01:39,632   copying gtdbtk/biolib_lite/seq_io.py -> build/lib/gtdbtk/biolib_lite
2023-03-23T04:01:39,636   copying gtdbtk/biolib_lite/logger.py -> build/lib/gtdbtk/biolib_lite
2023-03-23T04:01:39,641   copying gtdbtk/biolib_lite/__init__.py -> build/lib/gtdbtk/biolib_lite
2023-03-23T04:01:39,644   copying gtdbtk/biolib_lite/exceptions.py -> build/lib/gtdbtk/biolib_lite
2023-03-23T04:01:39,647   copying gtdbtk/biolib_lite/execute.py -> build/lib/gtdbtk/biolib_lite
2023-03-23T04:01:39,651   copying gtdbtk/biolib_lite/prodigal_biolib.py -> build/lib/gtdbtk/biolib_lite
2023-03-23T04:01:39,657   copying gtdbtk/biolib_lite/newick.py -> build/lib/gtdbtk/biolib_lite
2023-03-23T04:01:39,660   copying gtdbtk/biolib_lite/custom_help_formatter.py -> build/lib/gtdbtk/biolib_lite
2023-03-23T04:01:39,666   creating build/lib/gtdbtk/files
2023-03-23T04:01:39,668   copying gtdbtk/files/stage_logger.py -> build/lib/gtdbtk/files
2023-03-23T04:01:39,673   copying gtdbtk/files/marker_info.py -> build/lib/gtdbtk/files
2023-03-23T04:01:39,676   copying gtdbtk/files/red_dict.py -> build/lib/gtdbtk/files
2023-03-23T04:01:39,680   copying gtdbtk/files/pplacer_classification.py -> build/lib/gtdbtk/files
2023-03-23T04:01:39,684   copying gtdbtk/files/batchfile.py -> build/lib/gtdbtk/files
2023-03-23T04:01:39,687   copying gtdbtk/files/gtdb_radii.py -> build/lib/gtdbtk/files
2023-03-23T04:01:39,691   copying gtdbtk/files/__init__.py -> build/lib/gtdbtk/files
2023-03-23T04:01:39,694   copying gtdbtk/files/tree_mapping.py -> build/lib/gtdbtk/files
2023-03-23T04:01:39,697   copying gtdbtk/files/classify_summary.py -> build/lib/gtdbtk/files
2023-03-23T04:01:39,702   copying gtdbtk/files/missing_genomes.py -> build/lib/gtdbtk/files
2023-03-23T04:01:39,706   creating build/lib/gtdbtk/pipeline
2023-03-23T04:01:39,708   copying gtdbtk/pipeline/export_msa.py -> build/lib/gtdbtk/pipeline
2023-03-23T04:01:39,712   copying gtdbtk/pipeline/__init__.py -> build/lib/gtdbtk/pipeline
2023-03-23T04:01:39,715   copying gtdbtk/pipeline/align.py -> build/lib/gtdbtk/pipeline
2023-03-23T04:01:39,721   creating build/lib/gtdbtk/external
2023-03-23T04:01:39,734   copying gtdbtk/external/fastani.py -> build/lib/gtdbtk/external
2023-03-23T04:01:39,739   copying gtdbtk/external/fasttree.py -> build/lib/gtdbtk/external
2023-03-23T04:01:39,743   copying gtdbtk/external/pplacer.py -> build/lib/gtdbtk/external
2023-03-23T04:01:39,748   copying gtdbtk/external/mash.py -> build/lib/gtdbtk/external
2023-03-23T04:01:39,752   copying gtdbtk/external/hmm_aligner.py -> build/lib/gtdbtk/external
2023-03-23T04:01:39,757   copying gtdbtk/external/tigrfam_search.py -> build/lib/gtdbtk/external
2023-03-23T04:01:39,761   copying gtdbtk/external/__init__.py -> build/lib/gtdbtk/external
2023-03-23T04:01:39,764   copying gtdbtk/external/pfam_search.py -> build/lib/gtdbtk/external
2023-03-23T04:01:39,769   copying gtdbtk/external/prodigal.py -> build/lib/gtdbtk/external
2023-03-23T04:01:39,774   creating build/lib/gtdbtk/config
2023-03-23T04:01:39,776   copying gtdbtk/config/config.py -> build/lib/gtdbtk/config
2023-03-23T04:01:39,781   copying gtdbtk/config/__init__.py -> build/lib/gtdbtk/config
2023-03-23T04:01:39,784   copying gtdbtk/config/output.py -> build/lib/gtdbtk/config
2023-03-23T04:01:39,789   creating build/lib/gtdbtk/files/prodigal
2023-03-23T04:01:39,791   copying gtdbtk/files/prodigal/tln_table_summary.py -> build/lib/gtdbtk/files/prodigal
2023-03-23T04:01:39,794   copying gtdbtk/files/prodigal/__init__.py -> build/lib/gtdbtk/files/prodigal
2023-03-23T04:01:39,797   copying gtdbtk/files/prodigal/tln_table.py -> build/lib/gtdbtk/files/prodigal
2023-03-23T04:01:39,802   creating build/lib/gtdbtk/files/marker
2023-03-23T04:01:39,804   copying gtdbtk/files/marker/copy_number.py -> build/lib/gtdbtk/files/marker
2023-03-23T04:01:39,809   copying gtdbtk/files/marker/tophit.py -> build/lib/gtdbtk/files/marker
2023-03-23T04:01:39,813   copying gtdbtk/files/marker/__init__.py -> build/lib/gtdbtk/files/marker
2023-03-23T04:01:39,816   creating build/lib/gtdbtk/external/pypfam
2023-03-23T04:01:39,818   copying gtdbtk/external/pypfam/__init__.py -> build/lib/gtdbtk/external/pypfam
2023-03-23T04:01:39,823   creating build/lib/gtdbtk/external/pypfam/HMM
2023-03-23T04:01:39,825   copying gtdbtk/external/pypfam/HMM/HMMUnit.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-03-23T04:01:39,829   copying gtdbtk/external/pypfam/HMM/__init__.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-03-23T04:01:39,831   copying gtdbtk/external/pypfam/HMM/HMMResults.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-03-23T04:01:39,835   copying gtdbtk/external/pypfam/HMM/HMMSequence.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-03-23T04:01:39,839   copying gtdbtk/external/pypfam/HMM/HMMMatch.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-03-23T04:01:39,843   copying gtdbtk/external/pypfam/HMM/HMMResultsIO.py -> build/lib/gtdbtk/external/pypfam/HMM
2023-03-23T04:01:39,849   creating build/lib/gtdbtk/external/pypfam/Scan
2023-03-23T04:01:39,851   copying gtdbtk/external/pypfam/Scan/PfamScan.py -> build/lib/gtdbtk/external/pypfam/Scan
2023-03-23T04:01:39,856   copying gtdbtk/external/pypfam/Scan/__init__.py -> build/lib/gtdbtk/external/pypfam/Scan
2023-03-23T04:01:39,860   creating build/lib/tests/test_gtdbtk
2023-03-23T04:01:39,862   copying tests/test_gtdbtk/test_trim_msa.py -> build/lib/tests/test_gtdbtk
2023-03-23T04:01:39,866   copying tests/test_gtdbtk/test_main.py -> build/lib/tests/test_gtdbtk
2023-03-23T04:01:39,871   copying tests/test_gtdbtk/test_markers.py -> build/lib/tests/test_gtdbtk
2023-03-23T04:01:39,875   copying tests/test_gtdbtk/test_tools.py -> build/lib/tests/test_gtdbtk
2023-03-23T04:01:39,879   copying tests/test_gtdbtk/test__main__.py -> build/lib/tests/test_gtdbtk
2023-03-23T04:01:39,884   copying tests/test_gtdbtk/__init__.py -> build/lib/tests/test_gtdbtk
2023-03-23T04:01:39,888   creating build/lib/tests/test_gtdbtk/test_files
2023-03-23T04:01:39,889   copying tests/test_gtdbtk/test_files/__init__.py -> build/lib/tests/test_gtdbtk/test_files
2023-03-23T04:01:39,894   creating build/lib/tests/test_gtdbtk/test_external
2023-03-23T04:01:39,896   copying tests/test_gtdbtk/test_external/test_fasttree.py -> build/lib/tests/test_gtdbtk/test_external
2023-03-23T04:01:39,899   copying tests/test_gtdbtk/test_external/__init__.py -> build/lib/tests/test_gtdbtk/test_external
2023-03-23T04:01:39,902   copying tests/test_gtdbtk/test_external/test_fastani.py -> build/lib/tests/test_gtdbtk/test_external
2023-03-23T04:01:39,908   creating build/lib/tests/test_gtdbtk/test_biolib_lite
2023-03-23T04:01:39,910   copying tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2023-03-23T04:01:39,914   copying tests/test_gtdbtk/test_biolib_lite/test_newick.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2023-03-23T04:01:39,917   copying tests/test_gtdbtk/test_biolib_lite/__init__.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2023-03-23T04:01:39,920   copying tests/test_gtdbtk/test_biolib_lite/test_seq_io.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2023-03-23T04:01:39,926   copying tests/test_gtdbtk/test_biolib_lite/test_common.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2023-03-23T04:01:39,931   creating build/lib/tests/test_gtdbtk/test_files/test_prodigal
2023-03-23T04:01:39,933   copying tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py -> build/lib/tests/test_gtdbtk/test_files/test_prodigal
2023-03-23T04:01:39,937   copying tests/test_gtdbtk/test_files/test_prodigal/__init__.py -> build/lib/tests/test_gtdbtk/test_files/test_prodigal
2023-03-23T04:01:39,941   creating build/lib/tests/test_gtdbtk/test_files/test_marker
2023-03-23T04:01:39,943   copying tests/test_gtdbtk/test_files/test_marker/__init__.py -> build/lib/tests/test_gtdbtk/test_files/test_marker
2023-03-23T04:01:39,946   copying tests/test_gtdbtk/test_files/test_marker/test_tophit.py -> build/lib/tests/test_gtdbtk/test_files/test_marker
2023-03-23T04:01:39,951   copying tests/test_gtdbtk/test_files/test_marker/test_copy_number.py -> build/lib/tests/test_gtdbtk/test_files/test_marker
2023-03-23T04:01:39,960   creating build/lib/gtdbtk/tests
2023-03-23T04:01:39,961   creating build/lib/gtdbtk/tests/data
2023-03-23T04:01:39,962   creating build/lib/gtdbtk/tests/data/genomes
2023-03-23T04:01:39,964   copying gtdbtk/tests/data/genomes/genome_1.fna -> build/lib/gtdbtk/tests/data/genomes
2023-03-23T04:01:40,149   copying gtdbtk/tests/data/genomes/genome_2.fna -> build/lib/gtdbtk/tests/data/genomes
2023-03-23T04:01:40,213   copying gtdbtk/tests/data/genomes/genome_3.fna -> build/lib/gtdbtk/tests/data/genomes
2023-03-23T04:01:40,442   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2023-03-23T04:01:40,442     setuptools.SetuptoolsDeprecationWarning,
2023-03-23T04:01:40,501   installing to build/bdist.linux-armv7l/wheel
2023-03-23T04:01:40,502   running install
2023-03-23T04:01:40,562   running install_lib
2023-03-23T04:01:40,678   creating build/bdist.linux-armv7l
2023-03-23T04:01:40,679   creating build/bdist.linux-armv7l/wheel
2023-03-23T04:01:40,684   creating build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:40,686   copying build/lib/gtdbtk/main.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:40,727   copying build/lib/gtdbtk/markers.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:40,733   copying build/lib/gtdbtk/misc.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:40,739   creating build/bdist.linux-armv7l/wheel/gtdbtk/tests
2023-03-23T04:01:40,742   creating build/bdist.linux-armv7l/wheel/gtdbtk/tests/data
2023-03-23T04:01:40,746   creating build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2023-03-23T04:01:40,749   copying build/lib/gtdbtk/tests/data/genomes/genome_1.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2023-03-23T04:01:41,015   copying build/lib/gtdbtk/tests/data/genomes/genome_2.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2023-03-23T04:01:41,091   copying build/lib/gtdbtk/tests/data/genomes/genome_3.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2023-03-23T04:01:41,144   copying build/lib/gtdbtk/decorate.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:41,163   copying build/lib/gtdbtk/classify.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:41,176   copying build/lib/gtdbtk/ani_screen.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:41,182   creating build/bdist.linux-armv7l/wheel/gtdbtk/model
2023-03-23T04:01:41,184   copying build/lib/gtdbtk/model/enum.py -> build/bdist.linux-armv7l/wheel/gtdbtk/model
2023-03-23T04:01:41,188   copying build/lib/gtdbtk/model/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/model
2023-03-23T04:01:41,192   copying build/lib/gtdbtk/reroot_tree.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:41,197   copying build/lib/gtdbtk/ani_rep.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:41,202   copying build/lib/gtdbtk/relative_distance.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:41,209   creating build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-23T04:01:41,211   copying build/lib/gtdbtk/biolib_lite/taxonomy.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-23T04:01:41,218   copying build/lib/gtdbtk/biolib_lite/common.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-23T04:01:41,222   copying build/lib/gtdbtk/biolib_lite/parallel.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-23T04:01:41,227   copying build/lib/gtdbtk/biolib_lite/seq_io.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-23T04:01:41,232   copying build/lib/gtdbtk/biolib_lite/logger.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-23T04:01:41,236   copying build/lib/gtdbtk/biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-23T04:01:41,313   copying build/lib/gtdbtk/biolib_lite/exceptions.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-23T04:01:41,317   copying build/lib/gtdbtk/biolib_lite/execute.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-23T04:01:41,322   copying build/lib/gtdbtk/biolib_lite/prodigal_biolib.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-23T04:01:41,327   copying build/lib/gtdbtk/biolib_lite/newick.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-23T04:01:41,331   copying build/lib/gtdbtk/biolib_lite/custom_help_formatter.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2023-03-23T04:01:41,337   creating build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-23T04:01:41,340   copying build/lib/gtdbtk/files/stage_logger.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-23T04:01:41,344   copying build/lib/gtdbtk/files/marker_info.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-23T04:01:41,349   copying build/lib/gtdbtk/files/red_dict.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-23T04:01:41,353   copying build/lib/gtdbtk/files/pplacer_classification.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-23T04:01:41,358   copying build/lib/gtdbtk/files/batchfile.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-23T04:01:41,361   copying build/lib/gtdbtk/files/gtdb_radii.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-23T04:01:41,365   copying build/lib/gtdbtk/files/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-23T04:01:41,368   copying build/lib/gtdbtk/files/tree_mapping.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-23T04:01:41,372   copying build/lib/gtdbtk/files/classify_summary.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-23T04:01:41,378   creating build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2023-03-23T04:01:41,380   copying build/lib/gtdbtk/files/prodigal/tln_table_summary.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2023-03-23T04:01:41,385   copying build/lib/gtdbtk/files/prodigal/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2023-03-23T04:01:41,388   copying build/lib/gtdbtk/files/prodigal/tln_table.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2023-03-23T04:01:41,392   copying build/lib/gtdbtk/files/missing_genomes.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2023-03-23T04:01:41,398   creating build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2023-03-23T04:01:41,400   copying build/lib/gtdbtk/files/marker/copy_number.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2023-03-23T04:01:41,405   copying build/lib/gtdbtk/files/marker/tophit.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2023-03-23T04:01:41,410   copying build/lib/gtdbtk/files/marker/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2023-03-23T04:01:41,437   copying build/lib/gtdbtk/cli.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:41,443   copying build/lib/gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:41,447   copying build/lib/gtdbtk/exceptions.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:41,452   copying build/lib/gtdbtk/__main__.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:41,456   copying build/lib/gtdbtk/infer_ranks.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:41,461   copying build/lib/gtdbtk/split.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:41,467   creating build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2023-03-23T04:01:41,468   copying build/lib/gtdbtk/pipeline/export_msa.py -> build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2023-03-23T04:01:41,472   copying build/lib/gtdbtk/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2023-03-23T04:01:41,475   copying build/lib/gtdbtk/pipeline/align.py -> build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2023-03-23T04:01:41,480   creating build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-23T04:01:41,482   copying build/lib/gtdbtk/external/fastani.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-23T04:01:41,487   copying build/lib/gtdbtk/external/fasttree.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-23T04:01:41,491   copying build/lib/gtdbtk/external/pplacer.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-23T04:01:41,495   copying build/lib/gtdbtk/external/mash.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-23T04:01:41,499   copying build/lib/gtdbtk/external/hmm_aligner.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-23T04:01:41,504   copying build/lib/gtdbtk/external/tigrfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-23T04:01:41,510   creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam
2023-03-23T04:01:41,514   creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-03-23T04:01:41,516   copying build/lib/gtdbtk/external/pypfam/HMM/HMMUnit.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-03-23T04:01:41,520   copying build/lib/gtdbtk/external/pypfam/HMM/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-03-23T04:01:41,524   copying build/lib/gtdbtk/external/pypfam/HMM/HMMResults.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-03-23T04:01:41,529   copying build/lib/gtdbtk/external/pypfam/HMM/HMMSequence.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-03-23T04:01:41,533   copying build/lib/gtdbtk/external/pypfam/HMM/HMMMatch.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-03-23T04:01:41,537   copying build/lib/gtdbtk/external/pypfam/HMM/HMMResultsIO.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2023-03-23T04:01:41,543   creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan
2023-03-23T04:01:41,546   copying build/lib/gtdbtk/external/pypfam/Scan/PfamScan.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan
2023-03-23T04:01:41,552   copying build/lib/gtdbtk/external/pypfam/Scan/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan
2023-03-23T04:01:41,555   copying build/lib/gtdbtk/external/pypfam/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam
2023-03-23T04:01:41,559   copying build/lib/gtdbtk/external/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-23T04:01:41,562   copying build/lib/gtdbtk/external/pfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-23T04:01:41,567   copying build/lib/gtdbtk/external/prodigal.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2023-03-23T04:01:41,593   copying build/lib/gtdbtk/trim_msa.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:41,598   copying build/lib/gtdbtk/tools.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2023-03-23T04:01:41,604   creating build/bdist.linux-armv7l/wheel/gtdbtk/config
2023-03-23T04:01:41,607   copying build/lib/gtdbtk/config/config.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
2023-03-23T04:01:41,612   copying build/lib/gtdbtk/config/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
2023-03-23T04:01:41,616   copying build/lib/gtdbtk/config/output.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
2023-03-23T04:01:41,622   creating build/bdist.linux-armv7l/wheel/tests
2023-03-23T04:01:41,624   copying build/lib/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/tests
2023-03-23T04:01:41,631   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-03-23T04:01:41,635   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files
2023-03-23T04:01:41,651   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_prodigal
2023-03-23T04:01:41,653   copying build/lib/tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_prodigal
2023-03-23T04:01:41,659   copying build/lib/tests/test_gtdbtk/test_files/test_prodigal/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_prodigal
2023-03-23T04:01:41,663   copying build/lib/tests/test_gtdbtk/test_files/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files
2023-03-23T04:01:41,667   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2023-03-23T04:01:41,670   copying build/lib/tests/test_gtdbtk/test_files/test_marker/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2023-03-23T04:01:41,674   copying build/lib/tests/test_gtdbtk/test_files/test_marker/test_tophit.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2023-03-23T04:01:41,679   copying build/lib/tests/test_gtdbtk/test_files/test_marker/test_copy_number.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2023-03-23T04:01:41,684   copying build/lib/tests/test_gtdbtk/test_trim_msa.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-03-23T04:01:41,688   copying build/lib/tests/test_gtdbtk/test_main.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-03-23T04:01:41,764   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2023-03-23T04:01:41,766   copying build/lib/tests/test_gtdbtk/test_external/test_fasttree.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2023-03-23T04:01:41,771   copying build/lib/tests/test_gtdbtk/test_external/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2023-03-23T04:01:41,774   copying build/lib/tests/test_gtdbtk/test_external/test_fastani.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2023-03-23T04:01:41,779   copying build/lib/tests/test_gtdbtk/test_markers.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-03-23T04:01:41,783   copying build/lib/tests/test_gtdbtk/test_tools.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-03-23T04:01:41,788   copying build/lib/tests/test_gtdbtk/test__main__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-03-23T04:01:41,793   copying build/lib/tests/test_gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2023-03-23T04:01:41,798   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-03-23T04:01:41,800   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-03-23T04:01:41,805   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_newick.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-03-23T04:01:41,809   copying build/lib/tests/test_gtdbtk/test_biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-03-23T04:01:41,812   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_seq_io.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-03-23T04:01:41,816   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_common.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2023-03-23T04:01:41,821   copying build/lib/tests/common.py -> build/bdist.linux-armv7l/wheel/tests
2023-03-23T04:01:41,839   copying build/lib/tests/test_classify.py -> build/bdist.linux-armv7l/wheel/tests
2023-03-23T04:01:41,844   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2023-03-23T04:01:41,847   running install_data
2023-03-23T04:01:42,259   creating build/bdist.linux-armv7l/wheel/gtdbtk-2.2.6.data
2023-03-23T04:01:42,261   creating build/bdist.linux-armv7l/wheel/gtdbtk-2.2.6.data/data
2023-03-23T04:01:42,264   copying LICENSE -> build/bdist.linux-armv7l/wheel/gtdbtk-2.2.6.data/data/
2023-03-23T04:01:42,298   running install_egg_info
2023-03-23T04:01:42,462   running egg_info
2023-03-23T04:01:42,642   writing gtdbtk.egg-info/PKG-INFO
2023-03-23T04:01:42,646   writing dependency_links to gtdbtk.egg-info/dependency_links.txt
2023-03-23T04:01:42,651   writing entry points to gtdbtk.egg-info/entry_points.txt
2023-03-23T04:01:42,654   writing requirements to gtdbtk.egg-info/requires.txt
2023-03-23T04:01:42,656   writing top-level names to gtdbtk.egg-info/top_level.txt
2023-03-23T04:01:42,901   reading manifest file 'gtdbtk.egg-info/SOURCES.txt'
2023-03-23T04:01:42,939   adding license file 'LICENSE'
2023-03-23T04:01:42,957   writing manifest file 'gtdbtk.egg-info/SOURCES.txt'
2023-03-23T04:01:43,075   Copying gtdbtk.egg-info to build/bdist.linux-armv7l/wheel/gtdbtk-2.2.6-py3.7.egg-info
2023-03-23T04:01:43,191   running install_scripts
2023-03-23T04:01:43,333   creating build/bdist.linux-armv7l/wheel/gtdbtk-2.2.6.dist-info/WHEEL
2023-03-23T04:01:43,339   creating '/tmp/pip-wheel-plcxn_85/gtdbtk-2.2.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-03-23T04:01:43,345   adding 'gtdbtk/__init__.py'
2023-03-23T04:01:43,349   adding 'gtdbtk/__main__.py'
2023-03-23T04:01:43,354   adding 'gtdbtk/ani_rep.py'
2023-03-23T04:01:43,358   adding 'gtdbtk/ani_screen.py'
2023-03-23T04:01:43,385   adding 'gtdbtk/classify.py'
2023-03-23T04:01:43,394   adding 'gtdbtk/cli.py'
2023-03-23T04:01:43,401   adding 'gtdbtk/decorate.py'
2023-03-23T04:01:43,404   adding 'gtdbtk/exceptions.py'
2023-03-23T04:01:43,409   adding 'gtdbtk/infer_ranks.py'
2023-03-23T04:01:43,421   adding 'gtdbtk/main.py'
2023-03-23T04:01:43,432   adding 'gtdbtk/markers.py'
2023-03-23T04:01:43,539   adding 'gtdbtk/misc.py'
2023-03-23T04:01:43,545   adding 'gtdbtk/relative_distance.py'
2023-03-23T04:01:43,549   adding 'gtdbtk/reroot_tree.py'
2023-03-23T04:01:43,555   adding 'gtdbtk/split.py'
2023-03-23T04:01:43,562   adding 'gtdbtk/tools.py'
2023-03-23T04:01:43,567   adding 'gtdbtk/trim_msa.py'
2023-03-23T04:01:43,571   adding 'gtdbtk/biolib_lite/__init__.py'
2023-03-23T04:01:43,574   adding 'gtdbtk/biolib_lite/common.py'
2023-03-23T04:01:43,577   adding 'gtdbtk/biolib_lite/custom_help_formatter.py'
2023-03-23T04:01:43,580   adding 'gtdbtk/biolib_lite/exceptions.py'
2023-03-23T04:01:43,583   adding 'gtdbtk/biolib_lite/execute.py'
2023-03-23T04:01:43,587   adding 'gtdbtk/biolib_lite/logger.py'
2023-03-23T04:01:43,590   adding 'gtdbtk/biolib_lite/newick.py'
2023-03-23T04:01:43,594   adding 'gtdbtk/biolib_lite/parallel.py'
2023-03-23T04:01:43,599   adding 'gtdbtk/biolib_lite/prodigal_biolib.py'
2023-03-23T04:01:43,635   adding 'gtdbtk/biolib_lite/seq_io.py'
2023-03-23T04:01:43,643   adding 'gtdbtk/biolib_lite/taxonomy.py'
2023-03-23T04:01:43,647   adding 'gtdbtk/config/__init__.py'
2023-03-23T04:01:43,651   adding 'gtdbtk/config/config.py'
2023-03-23T04:01:43,679   adding 'gtdbtk/config/output.py'
2023-03-23T04:01:43,682   adding 'gtdbtk/external/__init__.py'
2023-03-23T04:01:43,687   adding 'gtdbtk/external/fastani.py'
2023-03-23T04:01:43,691   adding 'gtdbtk/external/fasttree.py'
2023-03-23T04:01:43,695   adding 'gtdbtk/external/hmm_aligner.py'
2023-03-23T04:01:43,708   adding 'gtdbtk/external/mash.py'
2023-03-23T04:01:43,715   adding 'gtdbtk/external/pfam_search.py'
2023-03-23T04:01:43,794   adding 'gtdbtk/external/pplacer.py'
2023-03-23T04:01:43,798   adding 'gtdbtk/external/prodigal.py'
2023-03-23T04:01:43,802   adding 'gtdbtk/external/tigrfam_search.py'
2023-03-23T04:01:43,806   adding 'gtdbtk/external/pypfam/__init__.py'
2023-03-23T04:01:43,809   adding 'gtdbtk/external/pypfam/HMM/HMMMatch.py'
2023-03-23T04:01:43,812   adding 'gtdbtk/external/pypfam/HMM/HMMResults.py'
2023-03-23T04:01:43,818   adding 'gtdbtk/external/pypfam/HMM/HMMResultsIO.py'
2023-03-23T04:01:43,838   adding 'gtdbtk/external/pypfam/HMM/HMMSequence.py'
2023-03-23T04:01:43,840   adding 'gtdbtk/external/pypfam/HMM/HMMUnit.py'
2023-03-23T04:01:43,843   adding 'gtdbtk/external/pypfam/HMM/__init__.py'
2023-03-23T04:01:43,850   adding 'gtdbtk/external/pypfam/Scan/PfamScan.py'
2023-03-23T04:01:43,852   adding 'gtdbtk/external/pypfam/Scan/__init__.py'
2023-03-23T04:01:43,856   adding 'gtdbtk/files/__init__.py'
2023-03-23T04:01:43,859   adding 'gtdbtk/files/batchfile.py'
2023-03-23T04:01:43,862   adding 'gtdbtk/files/classify_summary.py'
2023-03-23T04:01:43,865   adding 'gtdbtk/files/gtdb_radii.py'
2023-03-23T04:01:43,868   adding 'gtdbtk/files/marker_info.py'
2023-03-23T04:01:43,871   adding 'gtdbtk/files/missing_genomes.py'
2023-03-23T04:01:43,874   adding 'gtdbtk/files/pplacer_classification.py'
2023-03-23T04:01:43,877   adding 'gtdbtk/files/red_dict.py'
2023-03-23T04:01:43,880   adding 'gtdbtk/files/stage_logger.py'
2023-03-23T04:01:43,883   adding 'gtdbtk/files/tree_mapping.py'
2023-03-23T04:01:43,886   adding 'gtdbtk/files/marker/__init__.py'
2023-03-23T04:01:43,890   adding 'gtdbtk/files/marker/copy_number.py'
2023-03-23T04:01:43,894   adding 'gtdbtk/files/marker/tophit.py'
2023-03-23T04:01:43,897   adding 'gtdbtk/files/prodigal/__init__.py'
2023-03-23T04:01:43,900   adding 'gtdbtk/files/prodigal/tln_table.py'
2023-03-23T04:01:43,919   adding 'gtdbtk/files/prodigal/tln_table_summary.py'
2023-03-23T04:01:43,922   adding 'gtdbtk/model/__init__.py'
2023-03-23T04:01:43,924   adding 'gtdbtk/model/enum.py'
2023-03-23T04:01:43,927   adding 'gtdbtk/pipeline/__init__.py'
2023-03-23T04:01:43,931   adding 'gtdbtk/pipeline/align.py'
2023-03-23T04:01:43,934   adding 'gtdbtk/pipeline/export_msa.py'
2023-03-23T04:01:47,956   adding 'gtdbtk/tests/data/genomes/genome_1.fna'
2023-03-23T04:01:49,785   adding 'gtdbtk/tests/data/genomes/genome_2.fna'
2023-03-23T04:01:51,454   adding 'gtdbtk/tests/data/genomes/genome_3.fna'
2023-03-23T04:01:51,495   adding 'gtdbtk-2.2.6.data/data/LICENSE'
2023-03-23T04:01:51,501   adding 'tests/__init__.py'
2023-03-23T04:01:51,504   adding 'tests/common.py'
2023-03-23T04:01:51,507   adding 'tests/test_classify.py'
2023-03-23T04:01:51,511   adding 'tests/test_cli.py'
2023-03-23T04:01:51,515   adding 'tests/test_gtdbtk/__init__.py'
2023-03-23T04:01:51,519   adding 'tests/test_gtdbtk/test__main__.py'
2023-03-23T04:01:51,523   adding 'tests/test_gtdbtk/test_main.py'
2023-03-23T04:01:51,526   adding 'tests/test_gtdbtk/test_markers.py'
2023-03-23T04:01:51,529   adding 'tests/test_gtdbtk/test_tools.py'
2023-03-23T04:01:51,532   adding 'tests/test_gtdbtk/test_trim_msa.py'
2023-03-23T04:01:51,535   adding 'tests/test_gtdbtk/test_biolib_lite/__init__.py'
2023-03-23T04:01:51,538   adding 'tests/test_gtdbtk/test_biolib_lite/test_common.py'
2023-03-23T04:01:51,541   adding 'tests/test_gtdbtk/test_biolib_lite/test_newick.py'
2023-03-23T04:01:51,544   adding 'tests/test_gtdbtk/test_biolib_lite/test_seq_io.py'
2023-03-23T04:01:51,547   adding 'tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py'
2023-03-23T04:01:51,550   adding 'tests/test_gtdbtk/test_external/__init__.py'
2023-03-23T04:01:51,553   adding 'tests/test_gtdbtk/test_external/test_fastani.py'
2023-03-23T04:01:51,556   adding 'tests/test_gtdbtk/test_external/test_fasttree.py'
2023-03-23T04:01:51,559   adding 'tests/test_gtdbtk/test_files/__init__.py'
2023-03-23T04:01:51,563   adding 'tests/test_gtdbtk/test_files/test_marker/__init__.py'
2023-03-23T04:01:51,566   adding 'tests/test_gtdbtk/test_files/test_marker/test_copy_number.py'
2023-03-23T04:01:51,570   adding 'tests/test_gtdbtk/test_files/test_marker/test_tophit.py'
2023-03-23T04:01:51,573   adding 'tests/test_gtdbtk/test_files/test_prodigal/__init__.py'
2023-03-23T04:01:51,576   adding 'tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py'
2023-03-23T04:01:51,590   adding 'gtdbtk-2.2.6.dist-info/LICENSE'
2023-03-23T04:01:51,594   adding 'gtdbtk-2.2.6.dist-info/METADATA'
2023-03-23T04:01:51,596   adding 'gtdbtk-2.2.6.dist-info/WHEEL'
2023-03-23T04:01:51,599   adding 'gtdbtk-2.2.6.dist-info/entry_points.txt'
2023-03-23T04:01:51,600   adding 'gtdbtk-2.2.6.dist-info/top_level.txt'
2023-03-23T04:01:51,605   adding 'gtdbtk-2.2.6.dist-info/RECORD'
2023-03-23T04:01:51,677   removing build/bdist.linux-armv7l/wheel
2023-03-23T04:01:51,910   Building wheel for gtdbtk (setup.py): finished with status 'done'
2023-03-23T04:01:51,971   Created wheel for gtdbtk: filename=gtdbtk-2.2.6-py3-none-any.whl size=1828830 sha256=6f7c68179bd28368cf55f8f05f578c9690148531b6f2bba8106f0a7ff5705bc5
2023-03-23T04:01:51,973   Stored in directory: /tmp/pip-ephem-wheel-cache-95kl8bru/wheels/d6/9c/1e/7b1972a565020865ee22b742c7d9877309eb248538caf75d47
2023-03-23T04:01:52,013 Successfully built gtdbtk
2023-03-23T04:01:52,154 Removed build tracker: '/tmp/pip-build-tracker-91e723fh'