2023-03-26T19:28:05,226 Created temporary directory: /tmp/pip-ephem-wheel-cache-7j2jm0nn
2023-03-26T19:28:05,228 Created temporary directory: /tmp/pip-build-tracker-2ognxovz
2023-03-26T19:28:05,229 Initialized build tracking at /tmp/pip-build-tracker-2ognxovz
2023-03-26T19:28:05,229 Created build tracker: /tmp/pip-build-tracker-2ognxovz
2023-03-26T19:28:05,229 Entered build tracker: /tmp/pip-build-tracker-2ognxovz
2023-03-26T19:28:05,230 Created temporary directory: /tmp/pip-wheel-1_mcch8a
2023-03-26T19:28:05,234 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-26T19:28:05,237 Created temporary directory: /tmp/pip-ephem-wheel-cache-scw8ttan
2023-03-26T19:28:05,265 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-26T19:28:05,268 2 location(s) to search for versions of bonndit:
2023-03-26T19:28:05,268 * https://pypi.org/simple/bonndit/
2023-03-26T19:28:05,268 * https://www.piwheels.org/simple/bonndit/
2023-03-26T19:28:05,269 Fetching project page and analyzing links: https://pypi.org/simple/bonndit/
2023-03-26T19:28:05,269 Getting page https://pypi.org/simple/bonndit/
2023-03-26T19:28:05,270 Found index url https://pypi.org/simple
2023-03-26T19:28:05,322 Fetched page https://pypi.org/simple/bonndit/ as application/vnd.pypi.simple.v1+json
2023-03-26T19:28:05,324   Skipping link: No binaries permitted for bonndit: https://files.pythonhosted.org/packages/de/ec/c250e9bf384e47df46be1900426b5876b993dd68e9cef6cc7919dcfffbfe/bonndit-0.1.1-py3-none-any.whl (from https://pypi.org/simple/bonndit/)
2023-03-26T19:28:05,324   Found link https://files.pythonhosted.org/packages/86/ae/5aad212b52322641b1cfcfd6b223d370e4de2d24f4f7a90083ce50098391/bonndit-0.1.1.tar.gz (from https://pypi.org/simple/bonndit/), version: 0.1.1
2023-03-26T19:28:05,324   Skipping link: No binaries permitted for bonndit: https://files.pythonhosted.org/packages/4c/7a/e70a143e1655cf9362acbb66d43996eee01d5e64251195367ad0a58b3627/bonndit-0.1.2-py3-none-any.whl (from https://pypi.org/simple/bonndit/)
2023-03-26T19:28:05,325   Found link https://files.pythonhosted.org/packages/f6/1e/f04916ccb161e7d07eb41fe2c08639fbdc9a9317f29f73af6a8d2696f181/bonndit-0.1.2.tar.gz (from https://pypi.org/simple/bonndit/), version: 0.1.2
2023-03-26T19:28:05,325   Found link https://files.pythonhosted.org/packages/09/ca/c1505615ba53b76587cf2f1faf023731da65f45e4795d70e4a1820028e34/bonndit-0.3.0.tar.gz (from https://pypi.org/simple/bonndit/), version: 0.3.0
2023-03-26T19:28:05,325 Fetching project page and analyzing links: https://www.piwheels.org/simple/bonndit/
2023-03-26T19:28:05,326 Getting page https://www.piwheels.org/simple/bonndit/
2023-03-26T19:28:05,327 Found index url https://www.piwheels.org/simple
2023-03-26T19:28:05,522 Fetched page https://www.piwheels.org/simple/bonndit/ as text/html
2023-03-26T19:28:05,524   Skipping link: No binaries permitted for bonndit: https://www.piwheels.org/simple/bonndit/bonndit-0.1.2-py3-none-any.whl#sha256=bebfb474cc98f74ad4bde6b6f608db10d21a6dd2238cde69c3b52a4b56130083 (from https://www.piwheels.org/simple/bonndit/)
2023-03-26T19:28:05,524   Skipping link: No binaries permitted for bonndit: https://www.piwheels.org/simple/bonndit/bonndit-0.1.1-py3-none-any.whl#sha256=065f09464a34f2dc9047b6dec34e7631aa19911bfe4018147205eadff9854c7f (from https://www.piwheels.org/simple/bonndit/)
2023-03-26T19:28:05,524 Skipping link: not a file: https://www.piwheels.org/simple/bonndit/
2023-03-26T19:28:05,524 Skipping link: not a file: https://pypi.org/simple/bonndit/
2023-03-26T19:28:05,543 Given no hashes to check 1 links for project 'bonndit': discarding no candidates
2023-03-26T19:28:05,560 Collecting bonndit==0.3.0
2023-03-26T19:28:05,562   Created temporary directory: /tmp/pip-unpack-n8bkz80c
2023-03-26T19:28:05,612   Downloading bonndit-0.3.0.tar.gz (331 kB)
2023-03-26T19:28:06,074   Added bonndit==0.3.0 from https://files.pythonhosted.org/packages/09/ca/c1505615ba53b76587cf2f1faf023731da65f45e4795d70e4a1820028e34/bonndit-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-2ognxovz'
2023-03-26T19:28:06,082   Created temporary directory: /tmp/pip-build-env-n5yh589w
2023-03-26T19:28:06,093   Installing build dependencies: started
2023-03-26T19:28:06,094   Running command pip subprocess to install build dependencies
2023-03-26T19:28:07,340   Using pip 23.0.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-03-26T19:28:07,969   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-26T19:28:07,995   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-26T19:28:09,766   Collecting setuptools
2023-03-26T19:28:09,901     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.6.0-py3-none-any.whl (1.1 MB)
2023-03-26T19:28:10,167   Collecting wheel
2023-03-26T19:28:10,188     Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB)
2023-03-26T19:28:11,610   Collecting Cython
2023-03-26T19:28:12,092     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.33-cp39-cp39-linux_armv7l.whl (5.0 MB)
2023-03-26T19:28:13,463   Collecting numpy
2023-03-26T19:28:14,660     Using cached https://www.piwheels.org/simple/numpy/numpy-1.24.2-cp39-cp39-linux_armv7l.whl (12.3 MB)
2023-03-26T19:28:15,252   Collecting findblas
2023-03-26T19:28:15,303     Using cached https://www.piwheels.org/simple/findblas/findblas-0.1.21-py3-none-any.whl (24 kB)
2023-03-26T19:28:17,549   Installing collected packages: findblas, wheel, setuptools, numpy, Cython
2023-03-26T19:28:17,847     Creating /tmp/pip-build-env-n5yh589w/overlay/bin
2023-03-26T19:28:17,849     changing mode of /tmp/pip-build-env-n5yh589w/overlay/bin/wheel to 755
2023-03-26T19:28:28,800     changing mode of /tmp/pip-build-env-n5yh589w/overlay/bin/f2py to 755
2023-03-26T19:28:28,802     changing mode of /tmp/pip-build-env-n5yh589w/overlay/bin/f2py3 to 755
2023-03-26T19:28:28,804     changing mode of /tmp/pip-build-env-n5yh589w/overlay/bin/f2py3.9 to 755
2023-03-26T19:28:31,692     changing mode of /tmp/pip-build-env-n5yh589w/overlay/bin/cygdb to 755
2023-03-26T19:28:31,695     changing mode of /tmp/pip-build-env-n5yh589w/overlay/bin/cython to 755
2023-03-26T19:28:31,697     changing mode of /tmp/pip-build-env-n5yh589w/overlay/bin/cythonize to 755
2023-03-26T19:28:31,735   Successfully installed Cython-0.29.33 findblas-0.1.21 numpy-1.24.2 setuptools-67.6.0 wheel-0.40.0
2023-03-26T19:28:32,409   Installing build dependencies: finished with status 'done'
2023-03-26T19:28:32,422   Getting requirements to build wheel: started
2023-03-26T19:28:32,423   Running command Getting requirements to build wheel
2023-03-26T19:28:36,833   warning: src/bonndit/directions/csd_peaks.pyx:15:0: Unused entry 'dtype_signed'
2023-03-26T19:28:36,926   warning: src/bonndit/directions/csd_peaks.pyx:247:11: Index should be typed for more efficient access
2023-03-26T19:28:40,025   warning: src/bonndit/directions/fodfapprox.pyx:59:19: Unused entry 'k'
2023-03-26T19:28:40,025   warning: src/bonndit/directions/fodfapprox.pyx:64:13: Unused entry 'neighbors_count'
2023-03-26T19:28:40,026   warning: src/bonndit/directions/fodfapprox.pyx:73:23: Unused entry 'vs'
2023-03-26T19:28:40,026   warning: src/bonndit/directions/fodfapprox.pyx:79:19: Unused entry 'norm'
2023-03-26T19:28:40,026   warning: src/bonndit/directions/fodfapprox.pyx:80:19: Unused entry 'res'
2023-03-26T19:28:40,026   warning: src/bonndit/directions/fodfapprox.pyx:82:22: Unused entry 'tens_average'
2023-03-26T19:28:40,026   warning: src/bonndit/directions/fodfapprox.pyx:83:22: Unused entry 'pen_act'
2023-03-26T19:28:40,026   warning: src/bonndit/directions/fodfapprox.pyx:84:8: Unused entry 'three_matrix'
2023-03-26T19:28:40,026   warning: src/bonndit/directions/fodfapprox.pyx:85:19: Unused entry 'three_vector'
2023-03-26T19:28:40,027   warning: src/bonndit/directions/fodfapprox.pyx:85:64: Unused entry 'one_vector'
2023-03-26T19:28:40,027   warning: src/bonndit/directions/fodfapprox.pyx:86:21: Unused entry 'three_vector_placeholder'
2023-03-26T19:28:40,027   warning: src/bonndit/directions/fodfapprox.pyx:105:40: Unused entry 'k'
2023-03-26T19:28:40,027   warning: src/bonndit/directions/fodfapprox.pyx:106:40: Unused entry 'k'
2023-03-26T19:28:43,031   warning: src/bonndit/filter/filter.pyx:135:66: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
2023-03-26T19:28:43,032   warning: src/bonndit/filter/filter.pyx:137:66: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
2023-03-26T19:28:43,033   warning: src/bonndit/filter/filter.pyx:139:66: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
2023-03-26T19:28:43,036   warning: src/bonndit/filter/filter.pyx:152:79: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
2023-03-26T19:28:43,037   warning: src/bonndit/filter/filter.pyx:152:32: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
2023-03-26T19:28:43,038   warning: src/bonndit/filter/filter.pyx:153:44: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
2023-03-26T19:28:43,038   warning: src/bonndit/filter/filter.pyx:153:92: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
2023-03-26T19:28:43,039   warning: src/bonndit/filter/filter.pyx:154:131: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
2023-03-26T19:28:43,043   warning: src/bonndit/filter/filter.pyx:165:89: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
2023-03-26T19:28:43,043   warning: src/bonndit/filter/filter.pyx:165:37: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
2023-03-26T19:28:54,921   warning: src/bonndit/tracking/alignedDirection.pyx:389:28: local variable 'kappa_value' referenced before assignment
2023-03-26T19:29:02,046   warning: src/bonndit/tracking/interpolation.pyx:112:15: Unused entry 'zero'
2023-03-26T19:29:02,265   warning: src/bonndit/tracking/interpolation.pyx:463:24: Unused entry 'l'
2023-03-26T19:29:02,266   warning: src/bonndit/tracking/interpolation.pyx:463:27: Unused entry 'z'
2023-03-26T19:29:02,271   warning: src/bonndit/tracking/interpolation.pyx:487:20: Unused entry 'l'
2023-03-26T19:29:02,271   warning: src/bonndit/tracking/interpolation.pyx:487:34: Unused entry 'best_min'
2023-03-26T19:29:02,272   warning: src/bonndit/tracking/interpolation.pyx:488:28: Unused entry 'best_angle'
2023-03-26T19:29:02,274   warning: src/bonndit/tracking/interpolation.pyx:577:11: Unused entry 'z'
2023-03-26T19:29:02,274   warning: src/bonndit/tracking/interpolation.pyx:577:14: Unused entry 'i'
2023-03-26T19:29:05,006   /tmp/pip-build-env-n5yh589w/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-1_mcch8a/bonndit_42ab4243316a446d8aa323b0a821abe4/src/bonndit/tracking/kalman/kalman.pxd
2023-03-26T19:29:05,006     tree = Parsing.p_module(s, pxd, full_module_name)
2023-03-26T19:29:08,363   /tmp/pip-build-env-n5yh589w/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-1_mcch8a/bonndit_42ab4243316a446d8aa323b0a821abe4/src/bonndit/tracking/kalman/model.pxd
2023-03-26T19:29:08,363     tree = Parsing.p_module(s, pxd, full_module_name)
2023-03-26T19:29:13,232   warning: src/bonndit/tracking/stopping.pyx:86:2: Unused entry 'x'
2023-03-26T19:29:13,233   warning: src/bonndit/tracking/stopping.pyx:87:2: Unused entry 'y'
2023-03-26T19:29:13,233   warning: src/bonndit/tracking/stopping.pyx:88:2: Unused entry 'z'
2023-03-26T19:29:13,233   warning: src/bonndit/tracking/stopping.pyx:109:12: Unused entry 'i'
2023-03-26T19:29:13,234   warning: src/bonndit/tracking/stopping.pyx:109:16: Unused entry 'j'
2023-03-26T19:29:13,234   warning: src/bonndit/tracking/stopping.pyx:109:20: Unused entry 'k'
2023-03-26T19:29:18,731   /tmp/pip-build-env-n5yh589w/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-1_mcch8a/bonndit_42ab4243316a446d8aa323b0a821abe4/src/bonndit/utilc/blas_lapack.pxd
2023-03-26T19:29:18,731     tree = Parsing.p_module(s, pxd, full_module_name)
2023-03-26T19:29:33,780   ['bonndit', 'bonndit.data', 'bonndit.tracking', 'bonndit.pmodels', 'bonndit.directions', 'bonndit.utils', 'bonndit.utilc', 'bonndit.filter', 'bonndit.deconv', 'bonndit.tracking.kalman']
2023-03-26T19:29:33,780   Compiling src/bonndit/utilc/blas_lapack.pyx because it changed.
2023-03-26T19:29:33,780   Compiling src/bonndit/utilc/cython_helpers.pyx because it changed.
2023-03-26T19:29:33,780   Compiling src/bonndit/utilc/hota.pyx because it changed.
2023-03-26T19:29:33,781   Compiling src/bonndit/utilc/trilinear.pyx because it changed.
2023-03-26T19:29:33,781   Compiling src/bonndit/utilc/structures.pyx because it changed.
2023-03-26T19:29:33,781   Compiling src/bonndit/utilc/penalty_spherical.pyx because it changed.
2023-03-26T19:29:33,781   Compiling src/bonndit/utilc/lowrank.pyx because it changed.
2023-03-26T19:29:33,781   Compiling src/bonndit/directions/fodfapprox.pyx because it changed.
2023-03-26T19:29:33,781   Compiling src/bonndit/tracking/ItoW.pyx because it changed.
2023-03-26T19:29:33,781   Compiling src/bonndit/tracking/alignedDirection.pyx because it changed.
2023-03-26T19:29:33,782   Compiling src/bonndit/tracking/kalman/model.pyx because it changed.
2023-03-26T19:29:33,782   Compiling src/bonndit/tracking/kalman/kalman.pyx because it changed.
2023-03-26T19:29:33,782   Compiling src/bonndit/tracking/interpolation.pyx because it changed.
2023-03-26T19:29:33,782   Compiling src/bonndit/tracking/integration.pyx because it changed.
2023-03-26T19:29:33,782   Compiling src/bonndit/tracking/stopping.pyx because it changed.
2023-03-26T19:29:33,782   Compiling src/bonndit/tracking/tracking_prob.pyx because it changed.
2023-03-26T19:29:33,782   Compiling src/bonndit/pmodels/means.pyx because it changed.
2023-03-26T19:29:33,783   Compiling src/bonndit/pmodels/model_avg.pyx because it changed.
2023-03-26T19:29:33,783   Compiling src/bonndit/filter/filter.pyx because it changed.
2023-03-26T19:29:33,783   Compiling src/bonndit/directions/csd_peaks.pyx because it changed.
2023-03-26T19:29:33,783   [ 1/20] Cythonizing src/bonndit/directions/csd_peaks.pyx
2023-03-26T19:29:33,783   [ 2/20] Cythonizing src/bonndit/directions/fodfapprox.pyx
2023-03-26T19:29:33,783   [ 3/20] Cythonizing src/bonndit/filter/filter.pyx
2023-03-26T19:29:33,783   [ 4/20] Cythonizing src/bonndit/pmodels/means.pyx
2023-03-26T19:29:33,783   [ 5/20] Cythonizing src/bonndit/pmodels/model_avg.pyx
2023-03-26T19:29:33,784   [ 6/20] Cythonizing src/bonndit/tracking/ItoW.pyx
2023-03-26T19:29:33,784   [ 7/20] Cythonizing src/bonndit/tracking/alignedDirection.pyx
2023-03-26T19:29:33,784   [ 8/20] Cythonizing src/bonndit/tracking/integration.pyx
2023-03-26T19:29:33,784   [ 9/20] Cythonizing src/bonndit/tracking/interpolation.pyx
2023-03-26T19:29:33,784   [10/20] Cythonizing src/bonndit/tracking/kalman/kalman.pyx
2023-03-26T19:29:33,784   [11/20] Cythonizing src/bonndit/tracking/kalman/model.pyx
2023-03-26T19:29:33,784   [12/20] Cythonizing src/bonndit/tracking/stopping.pyx
2023-03-26T19:29:33,785   [13/20] Cythonizing src/bonndit/tracking/tracking_prob.pyx
2023-03-26T19:29:33,785   [14/20] Cythonizing src/bonndit/utilc/blas_lapack.pyx
2023-03-26T19:29:33,785   [15/20] Cythonizing src/bonndit/utilc/cython_helpers.pyx
2023-03-26T19:29:33,785   [16/20] Cythonizing src/bonndit/utilc/hota.pyx
2023-03-26T19:29:33,785   [17/20] Cythonizing src/bonndit/utilc/lowrank.pyx
2023-03-26T19:29:33,785   [18/20] Cythonizing src/bonndit/utilc/penalty_spherical.pyx
2023-03-26T19:29:33,785   [19/20] Cythonizing src/bonndit/utilc/structures.pyx
2023-03-26T19:29:33,785   [20/20] Cythonizing src/bonndit/utilc/trilinear.pyx
2023-03-26T19:29:34,339   Getting requirements to build wheel: finished with status 'done'
2023-03-26T19:29:34,360   Installing backend dependencies: started
2023-03-26T19:29:34,361   Running command pip subprocess to install backend dependencies
2023-03-26T19:29:35,753   Using pip 23.0.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-03-26T19:29:36,677   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-26T19:29:36,709   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-26T19:29:37,345   Collecting pytest-runner
2023-03-26T19:29:37,400     Using cached https://www.piwheels.org/simple/pytest-runner/pytest_runner-6.0.0-py3-none-any.whl (7.2 kB)
2023-03-26T19:29:39,343   Installing collected packages: pytest-runner
2023-03-26T19:29:39,392   Successfully installed pytest-runner-6.0.0
2023-03-26T19:29:39,836   Installing backend dependencies: finished with status 'done'
2023-03-26T19:29:39,839   Created temporary directory: /tmp/pip-modern-metadata-lhvm4x9_
2023-03-26T19:29:39,842   Preparing metadata (pyproject.toml): started
2023-03-26T19:29:39,843   Running command Preparing metadata (pyproject.toml)
2023-03-26T19:29:41,629   ['bonndit', 'bonndit.data', 'bonndit.tracking', 'bonndit.pmodels', 'bonndit.directions', 'bonndit.utils', 'bonndit.utilc', 'bonndit.filter', 'bonndit.deconv', 'bonndit.tracking.kalman']
2023-03-26T19:29:41,742   running dist_info
2023-03-26T19:29:41,766   creating /tmp/pip-modern-metadata-lhvm4x9_/bonndit.egg-info
2023-03-26T19:29:41,773   writing /tmp/pip-modern-metadata-lhvm4x9_/bonndit.egg-info/PKG-INFO
2023-03-26T19:29:41,776   writing dependency_links to /tmp/pip-modern-metadata-lhvm4x9_/bonndit.egg-info/dependency_links.txt
2023-03-26T19:29:41,779   writing top-level names to /tmp/pip-modern-metadata-lhvm4x9_/bonndit.egg-info/top_level.txt
2023-03-26T19:29:41,781   writing manifest file '/tmp/pip-modern-metadata-lhvm4x9_/bonndit.egg-info/SOURCES.txt'
2023-03-26T19:29:41,839   reading manifest file '/tmp/pip-modern-metadata-lhvm4x9_/bonndit.egg-info/SOURCES.txt'
2023-03-26T19:29:41,841   reading manifest template 'MANIFEST.in'
2023-03-26T19:29:41,915   warning: no previously-included files matching '__pycache__' found under directory '*'
2023-03-26T19:29:41,916   warning: no previously-included files matching '*.py[co]' found under directory '*'
2023-03-26T19:29:41,935   warning: no files found matching '*.jpg' under directory 'docs'
2023-03-26T19:29:41,940   warning: no files found matching '*.png' under directory 'docs'
2023-03-26T19:29:41,945   warning: no files found matching '*.gif' under directory 'docs'
2023-03-26T19:29:41,945   adding license file 'LICENSE'
2023-03-26T19:29:41,945   adding license file 'AUTHORS.rst'
2023-03-26T19:29:41,954   writing manifest file '/tmp/pip-modern-metadata-lhvm4x9_/bonndit.egg-info/SOURCES.txt'
2023-03-26T19:29:41,956   creating '/tmp/pip-modern-metadata-lhvm4x9_/bonndit-0.3.0.dist-info'
2023-03-26T19:29:42,226   Preparing metadata (pyproject.toml): finished with status 'done'
2023-03-26T19:29:42,234   Source in /tmp/pip-wheel-1_mcch8a/bonndit_42ab4243316a446d8aa323b0a821abe4 has version 0.3.0, which satisfies requirement bonndit==0.3.0 from https://files.pythonhosted.org/packages/09/ca/c1505615ba53b76587cf2f1faf023731da65f45e4795d70e4a1820028e34/bonndit-0.3.0.tar.gz
2023-03-26T19:29:42,235   Removed bonndit==0.3.0 from https://files.pythonhosted.org/packages/09/ca/c1505615ba53b76587cf2f1faf023731da65f45e4795d70e4a1820028e34/bonndit-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-2ognxovz'
2023-03-26T19:29:42,240 Created temporary directory: /tmp/pip-unpack-uui1gi4u
2023-03-26T19:29:42,240 Building wheels for collected packages: bonndit
2023-03-26T19:29:42,245   Created temporary directory: /tmp/pip-wheel-ggcqej8w
2023-03-26T19:29:42,245   Destination directory: /tmp/pip-wheel-ggcqej8w
2023-03-26T19:29:42,248   Building wheel for bonndit (pyproject.toml): started
2023-03-26T19:29:42,249   Running command Building wheel for bonndit (pyproject.toml)
2023-03-26T19:29:43,916   ['bonndit', 'bonndit.data', 'bonndit.tracking', 'bonndit.pmodels', 'bonndit.directions', 'bonndit.utils', 'bonndit.utilc', 'bonndit.filter', 'bonndit.deconv', 'bonndit.tracking.kalman']
2023-03-26T19:29:44,070   running bdist_wheel
2023-03-26T19:29:44,091   running build
2023-03-26T19:29:44,092   running build_py
2023-03-26T19:29:44,102   creating build
2023-03-26T19:29:44,103   creating build/lib.linux-armv7l-cpython-39
2023-03-26T19:29:44,103   creating build/lib.linux-armv7l-cpython-39/bonndit
2023-03-26T19:29:44,104   copying src/bonndit/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit
2023-03-26T19:29:44,107   creating build/lib.linux-armv7l-cpython-39/bonndit/data
2023-03-26T19:29:44,108   copying src/bonndit/data/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/data
2023-03-26T19:29:44,110   creating build/lib.linux-armv7l-cpython-39/bonndit/tracking
2023-03-26T19:29:44,111   copying src/bonndit/tracking/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/tracking
2023-03-26T19:29:44,114   creating build/lib.linux-armv7l-cpython-39/bonndit/pmodels
2023-03-26T19:29:44,115   copying src/bonndit/pmodels/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/pmodels
2023-03-26T19:29:44,117   creating build/lib.linux-armv7l-cpython-39/bonndit/directions
2023-03-26T19:29:44,118   copying src/bonndit/directions/watsonfit.py -> build/lib.linux-armv7l-cpython-39/bonndit/directions
2023-03-26T19:29:44,121   copying src/bonndit/directions/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/directions
2023-03-26T19:29:44,124   creating build/lib.linux-armv7l-cpython-39/bonndit/utils
2023-03-26T19:29:44,124   copying src/bonndit/utils/nrrd.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils
2023-03-26T19:29:44,127   copying src/bonndit/utils/io.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils
2023-03-26T19:29:44,130   copying src/bonndit/utils/storage.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils
2023-03-26T19:29:44,132   copying src/bonndit/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils
2023-03-26T19:29:44,134   copying src/bonndit/utils/dwmri.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils
2023-03-26T19:29:44,137   copying src/bonndit/utils/constants.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils
2023-03-26T19:29:44,140   copying src/bonndit/utils/vector.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils
2023-03-26T19:29:44,142   copying src/bonndit/utils/esh.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils
2023-03-26T19:29:44,144   copying src/bonndit/utils/shore.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils
2023-03-26T19:29:44,147   copying src/bonndit/utils/multivoxel.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils
2023-03-26T19:29:44,149   copying src/bonndit/utils/fields.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils
2023-03-26T19:29:44,151   copying src/bonndit/utils/tensor.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils
2023-03-26T19:29:44,153   copying src/bonndit/utils/mmath.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils
2023-03-26T19:29:44,155   copying src/bonndit/utils/gradients.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils
2023-03-26T19:29:44,158   creating build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,159   copying src/bonndit/utilc/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,161   creating build/lib.linux-armv7l-cpython-39/bonndit/filter
2023-03-26T19:29:44,162   copying src/bonndit/filter/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/filter
2023-03-26T19:29:44,164   creating build/lib.linux-armv7l-cpython-39/bonndit/deconv
2023-03-26T19:29:44,165   copying src/bonndit/deconv/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/deconv
2023-03-26T19:29:44,167   copying src/bonndit/deconv/shoredeconv.py -> build/lib.linux-armv7l-cpython-39/bonndit/deconv
2023-03-26T19:29:44,170   copying src/bonndit/deconv/shdeconv.py -> build/lib.linux-armv7l-cpython-39/bonndit/deconv
2023-03-26T19:29:44,173   copying src/bonndit/deconv/multivoxel.py -> build/lib.linux-armv7l-cpython-39/bonndit/deconv
2023-03-26T19:29:44,175   copying src/bonndit/deconv/dki.py -> build/lib.linux-armv7l-cpython-39/bonndit/deconv
2023-03-26T19:29:44,178   copying src/bonndit/deconv/base.py -> build/lib.linux-armv7l-cpython-39/bonndit/deconv
2023-03-26T19:29:44,181   creating build/lib.linux-armv7l-cpython-39/bonndit/tracking/kalman
2023-03-26T19:29:44,182   copying src/bonndit/tracking/kalman/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/tracking/kalman
2023-03-26T19:29:44,184   running egg_info
2023-03-26T19:29:44,208   writing src/bonndit.egg-info/PKG-INFO
2023-03-26T19:29:44,211   writing dependency_links to src/bonndit.egg-info/dependency_links.txt
2023-03-26T19:29:44,213   writing top-level names to src/bonndit.egg-info/top_level.txt
2023-03-26T19:29:44,242   reading manifest file 'src/bonndit.egg-info/SOURCES.txt'
2023-03-26T19:29:44,248   reading manifest template 'MANIFEST.in'
2023-03-26T19:29:44,326   warning: no previously-included files matching '__pycache__' found under directory '*'
2023-03-26T19:29:44,327   warning: no previously-included files matching '*.py[co]' found under directory '*'
2023-03-26T19:29:44,345   warning: no files found matching '*.jpg' under directory 'docs'
2023-03-26T19:29:44,351   warning: no files found matching '*.png' under directory 'docs'
2023-03-26T19:29:44,355   warning: no files found matching '*.gif' under directory 'docs'
2023-03-26T19:29:44,356   adding license file 'LICENSE'
2023-03-26T19:29:44,356   adding license file 'AUTHORS.rst'
2023-03-26T19:29:44,367   writing manifest file 'src/bonndit.egg-info/SOURCES.txt'
2023-03-26T19:29:44,388   copying src/bonndit/data/CC.pts -> build/lib.linux-armv7l-cpython-39/bonndit/data
2023-03-26T19:29:44,398   copying src/bonndit/tracking/ItoW.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/tracking
2023-03-26T19:29:44,400   copying src/bonndit/tracking/ItoW.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking
2023-03-26T19:29:44,402   copying src/bonndit/tracking/alignedDirection.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/tracking
2023-03-26T19:29:44,404   copying src/bonndit/tracking/alignedDirection.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking
2023-03-26T19:29:44,406   copying src/bonndit/tracking/alignedDirection_struct.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking
2023-03-26T19:29:44,408   copying src/bonndit/tracking/integration.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/tracking
2023-03-26T19:29:44,410   copying src/bonndit/tracking/integration.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking
2023-03-26T19:29:44,412   copying src/bonndit/tracking/interpolation.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/tracking
2023-03-26T19:29:44,414   copying src/bonndit/tracking/interpolation.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking
2023-03-26T19:29:44,417   copying src/bonndit/tracking/stopping.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/tracking
2023-03-26T19:29:44,419   copying src/bonndit/tracking/stopping.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking
2023-03-26T19:29:44,421   copying src/bonndit/tracking/tracking_prob.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking
2023-03-26T19:29:44,424   copying src/bonndit/pmodels/means.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/pmodels
2023-03-26T19:29:44,425   copying src/bonndit/pmodels/means.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/pmodels
2023-03-26T19:29:44,427   copying src/bonndit/pmodels/model_avg.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/pmodels
2023-03-26T19:29:44,430   copying src/bonndit/directions/__init__.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/directions
2023-03-26T19:29:44,431   copying src/bonndit/directions/__init__.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/directions
2023-03-26T19:29:44,433   copying src/bonndit/directions/csd_peaks.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/directions
2023-03-26T19:29:44,435   copying src/bonndit/directions/fodfapprox.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/directions
2023-03-26T19:29:44,437   copying src/bonndit/directions/sphere.npz -> build/lib.linux-armv7l-cpython-39/bonndit/directions
2023-03-26T19:29:44,440   copying src/bonndit/utilc/__init__.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,442   copying src/bonndit/utilc/average.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,444   copying src/bonndit/utilc/blas_lapack.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,446   copying src/bonndit/utilc/blas_lapack.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,448   copying src/bonndit/utilc/cython_helpers.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,450   copying src/bonndit/utilc/cython_helpers.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,452   copying src/bonndit/utilc/hota.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,454   copying src/bonndit/utilc/hota.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,456   copying src/bonndit/utilc/lowrank.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,458   copying src/bonndit/utilc/lowrank.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,460   copying src/bonndit/utilc/penalty_spherical.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,462   copying src/bonndit/utilc/penalty_spherical.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,465   copying src/bonndit/utilc/structures.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,467   copying src/bonndit/utilc/structures.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,469   copying src/bonndit/utilc/trilinear.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,471   copying src/bonndit/utilc/trilinear.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc
2023-03-26T19:29:44,473   copying src/bonndit/filter/filter.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/filter
2023-03-26T19:29:44,475   copying src/bonndit/tracking/kalman/kalman.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/tracking/kalman
2023-03-26T19:29:44,478   copying src/bonndit/tracking/kalman/kalman.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking/kalman
2023-03-26T19:29:44,480   copying src/bonndit/tracking/kalman/model.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/tracking/kalman
2023-03-26T19:29:44,482   copying src/bonndit/tracking/kalman/model.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking/kalman
2023-03-26T19:29:44,489   running build_ext
2023-03-26T19:29:46,533   Installation: Using BLAS library found in:
2023-03-26T19:29:46,533   /usr/lib/arm-linux-gnueabihf/libatlas.so


2023-03-26T19:29:46,533   building 'bonndit.utilc.blas_lapack' extension
2023-03-26T19:29:46,534   INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC

2023-03-26T19:29:46,534   creating build/temp.linux-armv7l-cpython-39
2023-03-26T19:29:46,534   creating build/temp.linux-armv7l-cpython-39/src
2023-03-26T19:29:46,535   creating build/temp.linux-armv7l-cpython-39/src/bonndit
2023-03-26T19:29:46,536   creating build/temp.linux-armv7l-cpython-39/src/bonndit/utilc
2023-03-26T19:29:46,536   INFO: compile options: '-DHAS_ATLAS -DHAS_UNDERSCORES -I/tmp/pip-build-env-n5yh589w/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/arm-linux-gnueabihf -I/tmp/pip-build-env-n5yh589w/overlay/lib/python3.9/site-packages/findblas/ -I/usr/include/python3.9 -c'
2023-03-26T19:29:46,537   extra options: '-Wall -m64 -Ofast'
2023-03-26T19:29:46,537   INFO: arm-linux-gnueabihf-gcc: src/bonndit/utilc/blas_lapack.c
2023-03-26T19:29:46,558   arm-linux-gnueabihf-gcc: error: unrecognized command-line option ‘-m64’
2023-03-26T19:29:46,563   error: Command "arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAS_ATLAS -DHAS_UNDERSCORES -I/tmp/pip-build-env-n5yh589w/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/arm-linux-gnueabihf -I/tmp/pip-build-env-n5yh589w/overlay/lib/python3.9/site-packages/findblas/ -I/usr/include/python3.9 -c src/bonndit/utilc/blas_lapack.c -o build/temp.linux-armv7l-cpython-39/src/bonndit/utilc/blas_lapack.o -Wall -m64 -Ofast" failed with exit status 1
2023-03-26T19:29:46,767   ERROR: [present-rich] Building wheel for bonndit (pyproject.toml) exited with 1
2023-03-26T19:29:46,785   [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmp4ahnhpzy[/]
2023-03-26T19:29:46,785   [bold magenta]cwd[/]: /tmp/pip-wheel-1_mcch8a/bonndit_42ab4243316a446d8aa323b0a821abe4
2023-03-26T19:29:46,786   Building wheel for bonndit (pyproject.toml): finished with status 'error'
2023-03-26T19:29:46,788   ERROR: Failed building wheel for bonndit
2023-03-26T19:29:46,791 Failed to build bonndit
2023-03-26T19:29:46,792 ERROR: Failed to build one or more wheels
2023-03-26T19:29:46,793 Exception information:
2023-03-26T19:29:46,793 Traceback (most recent call last):
2023-03-26T19:29:46,793   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper
2023-03-26T19:29:46,793     status = run_func(*args)
2023-03-26T19:29:46,793   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper
2023-03-26T19:29:46,793     return func(self, options, args)
2023-03-26T19:29:46,793   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 201, in run
2023-03-26T19:29:46,793     raise CommandError("Failed to build one or more wheels")
2023-03-26T19:29:46,793 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2023-03-26T19:29:46,796 Removed build tracker: '/tmp/pip-build-tracker-2ognxovz'