2023-03-27T11:27:23,929 Created temporary directory: /tmp/pip-ephem-wheel-cache-zdf70e6h
2023-03-27T11:27:23,932 Created temporary directory: /tmp/pip-build-tracker-ho846y2u
2023-03-27T11:27:23,932 Initialized build tracking at /tmp/pip-build-tracker-ho846y2u
2023-03-27T11:27:23,932 Created build tracker: /tmp/pip-build-tracker-ho846y2u
2023-03-27T11:27:23,932 Entered build tracker: /tmp/pip-build-tracker-ho846y2u
2023-03-27T11:27:23,933 Created temporary directory: /tmp/pip-wheel-gjqeozbj
2023-03-27T11:27:23,937 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-27T11:27:23,940 Created temporary directory: /tmp/pip-ephem-wheel-cache-hvllfy8h
2023-03-27T11:27:23,969 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-27T11:27:23,972 2 location(s) to search for versions of ambermdrun:
2023-03-27T11:27:23,972 * https://pypi.org/simple/ambermdrun/
2023-03-27T11:27:23,972 * https://www.piwheels.org/simple/ambermdrun/
2023-03-27T11:27:23,973 Fetching project page and analyzing links: https://pypi.org/simple/ambermdrun/
2023-03-27T11:27:23,973 Getting page https://pypi.org/simple/ambermdrun/
2023-03-27T11:27:23,974 Found index url https://pypi.org/simple
2023-03-27T11:27:24,026 Fetched page https://pypi.org/simple/ambermdrun/ as application/vnd.pypi.simple.v1+json
2023-03-27T11:27:24,028   Found link https://files.pythonhosted.org/packages/d6/db/18b74901842877c76f511fc9f2a0ed7f2ac8a09b72bc8926a79aa8e3613d/AmberMDrun-0.0.1.tar.gz (from https://pypi.org/simple/ambermdrun/) (requires-python:>=3.6), version: 0.0.1
2023-03-27T11:27:24,029   Found link https://files.pythonhosted.org/packages/72/fa/7827263fc857e7ac22274ad3e8a13f417473309556ea106aed8ac61301b9/AmberMDrun-0.0.2.tar.gz (from https://pypi.org/simple/ambermdrun/) (requires-python:>=3.6), version: 0.0.2
2023-03-27T11:27:24,029   Found link https://files.pythonhosted.org/packages/b4/d4/ba615c848cd91799c5be3f76cadb93a66892c729e88166d7d8282d093645/AmberMDrun-0.0.3.tar.gz (from https://pypi.org/simple/ambermdrun/) (requires-python:>=3.6), version: 0.0.3
2023-03-27T11:27:24,030 Fetching project page and analyzing links: https://www.piwheels.org/simple/ambermdrun/
2023-03-27T11:27:24,030 Getting page https://www.piwheels.org/simple/ambermdrun/
2023-03-27T11:27:24,031 Found index url https://www.piwheels.org/simple
2023-03-27T11:27:24,216 Fetched page https://www.piwheels.org/simple/ambermdrun/ as text/html
2023-03-27T11:27:24,218   Skipping link: No binaries permitted for ambermdrun: https://www.piwheels.org/simple/ambermdrun/AmberMDrun-0.0.2-cp39-cp39-linux_armv7l.whl#sha256=102c06dbbc37b52bacdbde48fd118a1e26403955f46644e6bcd94ddcc27f5df7 (from https://www.piwheels.org/simple/ambermdrun/) (requires-python:>=3.6)
2023-03-27T11:27:24,219   Skipping link: No binaries permitted for ambermdrun: https://www.piwheels.org/simple/ambermdrun/AmberMDrun-0.0.2-cp39-cp39-linux_armv6l.whl#sha256=102c06dbbc37b52bacdbde48fd118a1e26403955f46644e6bcd94ddcc27f5df7 (from https://www.piwheels.org/simple/ambermdrun/) (requires-python:>=3.6)
2023-03-27T11:27:24,219   Skipping link: No binaries permitted for ambermdrun: https://www.piwheels.org/simple/ambermdrun/AmberMDrun-0.0.1-cp39-cp39-linux_armv7l.whl#sha256=9d7e6f27bf8ed40c3dedf66ef4e92029d07387a88d52cc1879d0fb0cdceecb78 (from https://www.piwheels.org/simple/ambermdrun/) (requires-python:>=3.6)
2023-03-27T11:27:24,219   Skipping link: No binaries permitted for ambermdrun: https://www.piwheels.org/simple/ambermdrun/AmberMDrun-0.0.1-cp39-cp39-linux_armv6l.whl#sha256=9d7e6f27bf8ed40c3dedf66ef4e92029d07387a88d52cc1879d0fb0cdceecb78 (from https://www.piwheels.org/simple/ambermdrun/) (requires-python:>=3.6)
2023-03-27T11:27:24,219 Skipping link: not a file: https://www.piwheels.org/simple/ambermdrun/
2023-03-27T11:27:24,219 Skipping link: not a file: https://pypi.org/simple/ambermdrun/
2023-03-27T11:27:24,238 Given no hashes to check 1 links for project 'ambermdrun': discarding no candidates
2023-03-27T11:27:24,254 Collecting ambermdrun==0.0.3
2023-03-27T11:27:24,257   Created temporary directory: /tmp/pip-unpack-l6w8bdj6
2023-03-27T11:27:24,301   Downloading AmberMDrun-0.0.3.tar.gz (925 kB)
2023-03-27T11:27:25,230   Added ambermdrun==0.0.3 from https://files.pythonhosted.org/packages/b4/d4/ba615c848cd91799c5be3f76cadb93a66892c729e88166d7d8282d093645/AmberMDrun-0.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-ho846y2u'
2023-03-27T11:27:25,237   Created temporary directory: /tmp/pip-build-env-9ipral2c
2023-03-27T11:27:25,248   Installing build dependencies: started
2023-03-27T11:27:25,249   Running command pip subprocess to install build dependencies
2023-03-27T11:27:26,516   Using pip 23.0.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2023-03-27T11:27:27,155   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-27T11:27:27,182   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-27T11:27:28,847   Collecting setuptools>=42
2023-03-27T11:27:28,958     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.6.0-py3-none-any.whl (1.1 MB)
2023-03-27T11:27:29,223   Collecting wheel
2023-03-27T11:27:29,242     Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB)
2023-03-27T11:27:29,501   Collecting ninja
2023-03-27T11:27:29,523     Using cached https://www.piwheels.org/simple/ninja/ninja-1.11.1-cp39-cp39-linux_armv7l.whl (132 kB)
2023-03-27T11:27:30,378   Collecting cmake>=3.12
2023-03-27T11:27:32,058     Using cached https://www.piwheels.org/simple/cmake/cmake-3.26.1-cp39-cp39-linux_armv7l.whl (17.6 MB)
2023-03-27T11:27:35,180   Installing collected packages: ninja, cmake, wheel, setuptools
2023-03-27T11:27:35,245     Creating /tmp/pip-build-env-9ipral2c/overlay/bin
2023-03-27T11:27:35,247     changing mode of /tmp/pip-build-env-9ipral2c/overlay/bin/ninja to 755
2023-03-27T11:27:41,960     changing mode of /tmp/pip-build-env-9ipral2c/overlay/bin/cmake to 755
2023-03-27T11:27:41,962     changing mode of /tmp/pip-build-env-9ipral2c/overlay/bin/cpack to 755
2023-03-27T11:27:41,965     changing mode of /tmp/pip-build-env-9ipral2c/overlay/bin/ctest to 755
2023-03-27T11:27:42,323     changing mode of /tmp/pip-build-env-9ipral2c/overlay/bin/wheel to 755
2023-03-27T11:27:44,622   Successfully installed cmake-3.26.1 ninja-1.11.1 setuptools-67.6.0 wheel-0.40.0
2023-03-27T11:27:45,184   Installing build dependencies: finished with status 'done'
2023-03-27T11:27:45,190   Getting requirements to build wheel: started
2023-03-27T11:27:45,191   Running command Getting requirements to build wheel
2023-03-27T11:27:45,778   running egg_info
2023-03-27T11:27:45,784   writing AmberMDrun.egg-info/PKG-INFO
2023-03-27T11:27:45,786   writing dependency_links to AmberMDrun.egg-info/dependency_links.txt
2023-03-27T11:27:45,788   writing entry points to AmberMDrun.egg-info/entry_points.txt
2023-03-27T11:27:45,790   writing requirements to AmberMDrun.egg-info/requires.txt
2023-03-27T11:27:45,791   writing top-level names to AmberMDrun.egg-info/top_level.txt
2023-03-27T11:27:45,849   reading manifest file 'AmberMDrun.egg-info/SOURCES.txt'
2023-03-27T11:27:45,902   reading manifest template 'MANIFEST.in'
2023-03-27T11:27:45,936   adding license file 'LICENSE'
2023-03-27T11:27:45,955   writing manifest file 'AmberMDrun.egg-info/SOURCES.txt'
2023-03-27T11:27:46,020   Getting requirements to build wheel: finished with status 'done'
2023-03-27T11:27:46,031   Created temporary directory: /tmp/pip-modern-metadata-abis5kae
2023-03-27T11:27:46,034   Preparing metadata (pyproject.toml): started
2023-03-27T11:27:46,035   Running command Preparing metadata (pyproject.toml)
2023-03-27T11:27:46,601   running dist_info
2023-03-27T11:27:46,621   creating /tmp/pip-modern-metadata-abis5kae/AmberMDrun.egg-info
2023-03-27T11:27:46,627   writing /tmp/pip-modern-metadata-abis5kae/AmberMDrun.egg-info/PKG-INFO
2023-03-27T11:27:46,630   writing dependency_links to /tmp/pip-modern-metadata-abis5kae/AmberMDrun.egg-info/dependency_links.txt
2023-03-27T11:27:46,632   writing entry points to /tmp/pip-modern-metadata-abis5kae/AmberMDrun.egg-info/entry_points.txt
2023-03-27T11:27:46,633   writing requirements to /tmp/pip-modern-metadata-abis5kae/AmberMDrun.egg-info/requires.txt
2023-03-27T11:27:46,635   writing top-level names to /tmp/pip-modern-metadata-abis5kae/AmberMDrun.egg-info/top_level.txt
2023-03-27T11:27:46,636   writing manifest file '/tmp/pip-modern-metadata-abis5kae/AmberMDrun.egg-info/SOURCES.txt'
2023-03-27T11:27:46,659   reading manifest file '/tmp/pip-modern-metadata-abis5kae/AmberMDrun.egg-info/SOURCES.txt'
2023-03-27T11:27:46,662   reading manifest template 'MANIFEST.in'
2023-03-27T11:27:46,685   adding license file 'LICENSE'
2023-03-27T11:27:46,699   writing manifest file '/tmp/pip-modern-metadata-abis5kae/AmberMDrun.egg-info/SOURCES.txt'
2023-03-27T11:27:46,701   creating '/tmp/pip-modern-metadata-abis5kae/AmberMDrun-0.0.3.dist-info'
2023-03-27T11:27:46,876   Preparing metadata (pyproject.toml): finished with status 'done'
2023-03-27T11:27:46,884   Source in /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c has version 0.0.3, which satisfies requirement ambermdrun==0.0.3 from https://files.pythonhosted.org/packages/b4/d4/ba615c848cd91799c5be3f76cadb93a66892c729e88166d7d8282d093645/AmberMDrun-0.0.3.tar.gz
2023-03-27T11:27:46,885   Removed ambermdrun==0.0.3 from https://files.pythonhosted.org/packages/b4/d4/ba615c848cd91799c5be3f76cadb93a66892c729e88166d7d8282d093645/AmberMDrun-0.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-ho846y2u'
2023-03-27T11:27:46,890 Created temporary directory: /tmp/pip-unpack-qz6u3ni4
2023-03-27T11:27:46,891 Building wheels for collected packages: ambermdrun
2023-03-27T11:27:46,896   Created temporary directory: /tmp/pip-wheel-_agjmfzb
2023-03-27T11:27:46,896   Destination directory: /tmp/pip-wheel-_agjmfzb
2023-03-27T11:27:46,899   Building wheel for ambermdrun (pyproject.toml): started
2023-03-27T11:27:46,900   Running command Building wheel for ambermdrun (pyproject.toml)
2023-03-27T11:27:47,511   running bdist_wheel
2023-03-27T11:27:47,529   running build
2023-03-27T11:27:47,530   running build_py
2023-03-27T11:27:47,538   creating build
2023-03-27T11:27:47,539   creating build/lib.linux-armv7l-cpython-39
2023-03-27T11:27:47,540   creating build/lib.linux-armv7l-cpython-39/AmberMDrun
2023-03-27T11:27:47,541   copying AmberMDrun/equil.py -> build/lib.linux-armv7l-cpython-39/AmberMDrun
2023-03-27T11:27:47,543   copying AmberMDrun/version.py -> build/lib.linux-armv7l-cpython-39/AmberMDrun
2023-03-27T11:27:47,545   copying AmberMDrun/main.py -> build/lib.linux-armv7l-cpython-39/AmberMDrun
2023-03-27T11:27:47,547   copying AmberMDrun/__init__.py -> build/lib.linux-armv7l-cpython-39/AmberMDrun
2023-03-27T11:27:47,549   copying AmberMDrun/mmpbsa.py -> build/lib.linux-armv7l-cpython-39/AmberMDrun
2023-03-27T11:27:47,551   copying AmberMDrun/pyamber.py -> build/lib.linux-armv7l-cpython-39/AmberMDrun
2023-03-27T11:27:47,554   running build_ext
2023-03-27T11:27:48,179   -- The CXX compiler identification is GNU 10.2.1
2023-03-27T11:27:48,233   -- Detecting CXX compiler ABI info
2023-03-27T11:27:48,567   -- Detecting CXX compiler ABI info - done
2023-03-27T11:27:48,606   -- Check for working CXX compiler: /usr/bin/c++ - skipped
2023-03-27T11:27:48,608   -- Detecting CXX compile features
2023-03-27T11:27:48,610   -- Detecting CXX compile features - done
2023-03-27T11:27:48,630   -- Performing Test COMPILER_SUPPORTS_CXX23
2023-03-27T11:27:48,744   -- Performing Test COMPILER_SUPPORTS_CXX23 - Failed
2023-03-27T11:27:48,748   -- Performing Test COMPILER_SUPPORTS_CXX20
2023-03-27T11:27:49,107   -- Performing Test COMPILER_SUPPORTS_CXX20 - Success
2023-03-27T11:27:49,111   -- Performing Test COMPILER_SUPPORTS_CXX17
2023-03-27T11:27:49,440   -- Performing Test COMPILER_SUPPORTS_CXX17 - Success
2023-03-27T11:27:49,440   -- current platform: Linux
2023-03-27T11:27:49,445   -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
2023-03-27T11:27:49,873   -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
2023-03-27T11:27:49,875   -- Looking for pthread_create in pthreads
2023-03-27T11:27:50,124   -- Looking for pthread_create in pthreads - not found
2023-03-27T11:27:50,124   -- Looking for pthread_create in pthread
2023-03-27T11:27:50,412   -- Looking for pthread_create in pthread - found
2023-03-27T11:27:50,416   -- Found Threads: TRUE
2023-03-27T11:27:50,438   -- pybind11 v2.10.4
2023-03-27T11:27:50,507   -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6")
2023-03-27T11:27:51,115   -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so
2023-03-27T11:27:51,121   -- Performing Test HAS_FLTO
2023-03-27T11:27:51,527   -- Performing Test HAS_FLTO - Success
2023-03-27T11:27:51,534   -- Configuring done (3.8s)
2023-03-27T11:27:51,576   -- Generating done (0.0s)
2023-03-27T11:27:51,605   -- Build files have been written to: /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/build/temp.linux-armv7l-cpython-39/AmberMDrun
2023-03-27T11:28:05,365   [1/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/common.cpp.o
2023-03-27T11:28:19,467   [2/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/SystemInfo.cpp.o
2023-03-27T11:28:26,094   [3/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/format.cc.o
2023-03-27T11:28:29,838   [4/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/gamd.cpp.o
2023-03-27T11:28:35,742   [5/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/npt.cpp.o
2023-03-27T11:28:38,240   [6/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/os.cc.o
2023-03-27T11:28:39,034   [7/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/md.cpp.o
2023-03-27T11:28:39,035   In file included from /usr/include/c++/10/vector:72,
2023-03-27T11:28:39,035                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/SystemInfo.hpp:12,
2023-03-27T11:28:39,035                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/base.hpp:17,
2023-03-27T11:28:39,036                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/md.hpp:8,
2023-03-27T11:28:39,036                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/src/md.cpp:4:
2023-03-27T11:28:39,036   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-03-27T11:28:39,037   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-03-27T11:28:39,037     426 |       vector<_Tp, _Alloc>::
2023-03-27T11:28:39,037         |       ^~~~~~~~~~~~~~~~~~~
2023-03-27T11:28:39,038   In file included from /usr/include/c++/10/vector:67,
2023-03-27T11:28:39,038                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/SystemInfo.hpp:12,
2023-03-27T11:28:39,039                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/base.hpp:17,
2023-03-27T11:28:39,039                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/md.hpp:8,
2023-03-27T11:28:39,039                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/src/md.cpp:4:
2023-03-27T11:28:39,040   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void tqdm::progress(int, int)’:
2023-03-27T11:28:39,040   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-03-27T11:28:39,040    1198 |    _M_realloc_insert(end(), __x);
2023-03-27T11:28:39,041         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-03-27T11:28:40,410   [8/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/base.cpp.o
2023-03-27T11:28:40,410   In file included from /usr/include/c++/10/vector:72,
2023-03-27T11:28:40,411                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/SystemInfo.hpp:12,
2023-03-27T11:28:40,411                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/base.hpp:17,
2023-03-27T11:28:40,411                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/src/base.cpp:4:
2023-03-27T11:28:40,411   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-03-27T11:28:40,412   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-03-27T11:28:40,412     426 |       vector<_Tp, _Alloc>::
2023-03-27T11:28:40,412         |       ^~~~~~~~~~~~~~~~~~~
2023-03-27T11:28:40,413   In file included from /usr/include/c++/10/vector:67,
2023-03-27T11:28:40,413                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/SystemInfo.hpp:12,
2023-03-27T11:28:40,413                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/base.hpp:17,
2023-03-27T11:28:40,413                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/src/base.cpp:4:
2023-03-27T11:28:40,414   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void tqdm::progress(int, int)’:
2023-03-27T11:28:40,414   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-03-27T11:28:40,414    1198 |    _M_realloc_insert(end(), __x);
2023-03-27T11:28:40,414         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-03-27T11:28:43,728   [9/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/nvt.cpp.o
2023-03-27T11:28:50,713   [10/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/min.cpp.o
2023-03-27T11:28:50,714   In file included from /usr/include/c++/10/vector:72,
2023-03-27T11:28:50,714                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/SystemInfo.hpp:12,
2023-03-27T11:28:50,715                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/base.hpp:17,
2023-03-27T11:28:50,715                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/min.hpp:7,
2023-03-27T11:28:50,715                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/src/min.cpp:4:
2023-03-27T11:28:50,716   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-03-27T11:28:50,716   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-03-27T11:28:50,716     426 |       vector<_Tp, _Alloc>::
2023-03-27T11:28:50,716         |       ^~~~~~~~~~~~~~~~~~~
2023-03-27T11:28:50,717   In file included from /usr/include/c++/10/vector:67,
2023-03-27T11:28:50,717                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/SystemInfo.hpp:12,
2023-03-27T11:28:50,717                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/base.hpp:17,
2023-03-27T11:28:50,718                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/include/min.hpp:7,
2023-03-27T11:28:50,718                    from /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/AmberMDrun/src/min.cpp:4:
2023-03-27T11:28:50,718   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void tqdm::progress(int, int)’:
2023-03-27T11:28:50,718   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-03-27T11:28:50,719    1198 |    _M_realloc_insert(end(), __x);
2023-03-27T11:28:50,719         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-03-27T11:28:58,640   [11/16] Building CXX object AmberMDrun/CMakeFiles/amberMd.dir/main.cpp.o
2023-03-27T11:29:00,384   [12/16] Building CXX object AmberMDrun/CMakeFiles/ambermd.dir/src/smd.cpp.o
2023-03-27T11:29:00,591   [13/16] Linking CXX static library AmberMDrun/libambermd.a
2023-03-27T11:29:02,069   [14/16] Linking CXX executable AmberMDrun/amberMd
2023-03-27T11:29:08,836   [15/16] Building CXX object AmberMDrun/CMakeFiles/_pyamber.dir/pyamber.cpp.o
2023-03-27T11:29:29,250   [16/16] Linking CXX shared module /tmp/pip-wheel-gjqeozbj/ambermdrun_f10b2932356943fb94ed09c7c8a7da6c/build/lib.linux-armv7l-cpython-39/AmberMDrun/_pyamber.cpython-39-arm-linux-gnueabihf.so
2023-03-27T11:29:29,291   installing to build/bdist.linux-armv7l/wheel
2023-03-27T11:29:29,291   running install
2023-03-27T11:29:29,318   running install_lib
2023-03-27T11:29:29,328   creating build/bdist.linux-armv7l
2023-03-27T11:29:29,328   creating build/bdist.linux-armv7l/wheel
2023-03-27T11:29:29,331   creating build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-27T11:29:29,332   copying build/lib.linux-armv7l-cpython-39/AmberMDrun/equil.py -> build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-27T11:29:29,335   copying build/lib.linux-armv7l-cpython-39/AmberMDrun/version.py -> build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-27T11:29:29,338   copying build/lib.linux-armv7l-cpython-39/AmberMDrun/main.py -> build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-27T11:29:29,341   copying build/lib.linux-armv7l-cpython-39/AmberMDrun/_pyamber.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-27T11:29:29,385   copying build/lib.linux-armv7l-cpython-39/AmberMDrun/__init__.py -> build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-27T11:29:29,388   copying build/lib.linux-armv7l-cpython-39/AmberMDrun/mmpbsa.py -> build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-27T11:29:29,391   copying build/lib.linux-armv7l-cpython-39/AmberMDrun/pyamber.py -> build/bdist.linux-armv7l/wheel/AmberMDrun
2023-03-27T11:29:29,393   running install_egg_info
2023-03-27T11:29:29,425   running egg_info
2023-03-27T11:29:29,431   writing AmberMDrun.egg-info/PKG-INFO
2023-03-27T11:29:29,433   writing dependency_links to AmberMDrun.egg-info/dependency_links.txt
2023-03-27T11:29:29,435   writing entry points to AmberMDrun.egg-info/entry_points.txt
2023-03-27T11:29:29,437   writing requirements to AmberMDrun.egg-info/requires.txt
2023-03-27T11:29:29,439   writing top-level names to AmberMDrun.egg-info/top_level.txt
2023-03-27T11:29:29,450   reading manifest file 'AmberMDrun.egg-info/SOURCES.txt'
2023-03-27T11:29:29,511   reading manifest template 'MANIFEST.in'
2023-03-27T11:29:29,535   adding license file 'LICENSE'
2023-03-27T11:29:29,554   writing manifest file 'AmberMDrun.egg-info/SOURCES.txt'
2023-03-27T11:29:29,557   Copying AmberMDrun.egg-info to build/bdist.linux-armv7l/wheel/AmberMDrun-0.0.3-py3.9.egg-info
2023-03-27T11:29:29,574   running install_scripts
2023-03-27T11:29:29,622   creating build/bdist.linux-armv7l/wheel/AmberMDrun-0.0.3.dist-info/WHEEL
2023-03-27T11:29:29,626   creating '/tmp/pip-wheel-_agjmfzb/.tmp-kjdmlv4k/AmberMDrun-0.0.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-03-27T11:29:29,629   adding 'AmberMDrun/__init__.py'
2023-03-27T11:29:29,941   adding 'AmberMDrun/_pyamber.cpython-39-arm-linux-gnueabihf.so'
2023-03-27T11:29:29,954   adding 'AmberMDrun/equil.py'
2023-03-27T11:29:29,956   adding 'AmberMDrun/main.py'
2023-03-27T11:29:29,958   adding 'AmberMDrun/mmpbsa.py'
2023-03-27T11:29:29,960   adding 'AmberMDrun/pyamber.py'
2023-03-27T11:29:29,962   adding 'AmberMDrun/version.py'
2023-03-27T11:29:29,965   adding 'AmberMDrun-0.0.3.dist-info/LICENSE'
2023-03-27T11:29:29,967   adding 'AmberMDrun-0.0.3.dist-info/METADATA'
2023-03-27T11:29:29,968   adding 'AmberMDrun-0.0.3.dist-info/WHEEL'
2023-03-27T11:29:29,970   adding 'AmberMDrun-0.0.3.dist-info/entry_points.txt'
2023-03-27T11:29:29,971   adding 'AmberMDrun-0.0.3.dist-info/top_level.txt'
2023-03-27T11:29:29,972   adding 'AmberMDrun-0.0.3.dist-info/RECORD'
2023-03-27T11:29:29,983   removing build/bdist.linux-armv7l/wheel
2023-03-27T11:29:30,070   Building wheel for ambermdrun (pyproject.toml): finished with status 'done'
2023-03-27T11:29:30,092   Created wheel for ambermdrun: filename=AmberMDrun-0.0.3-cp39-cp39-linux_armv7l.whl size=624088 sha256=2cf4272b2c7bc0c08bfdc05d4ae26c24e4c9271aa6b54e75aa8483d86cbe04f4
2023-03-27T11:29:30,093   Stored in directory: /tmp/pip-ephem-wheel-cache-hvllfy8h/wheels/24/b2/0b/9d8b00cedf02132c6a042ace4fec34be6813f166b7708b3f2d
2023-03-27T11:29:30,105 Successfully built ambermdrun
2023-03-27T11:29:30,130 Removed build tracker: '/tmp/pip-build-tracker-ho846y2u'