2023-03-27T12:39:19,485 Created temporary directory: /tmp/pip-ephem-wheel-cache-2x5ibjde 2023-03-27T12:39:19,489 Created temporary directory: /tmp/pip-build-tracker-0p4672cx 2023-03-27T12:39:19,489 Initialized build tracking at /tmp/pip-build-tracker-0p4672cx 2023-03-27T12:39:19,489 Created build tracker: /tmp/pip-build-tracker-0p4672cx 2023-03-27T12:39:19,490 Entered build tracker: /tmp/pip-build-tracker-0p4672cx 2023-03-27T12:39:19,491 Created temporary directory: /tmp/pip-wheel-dj51p39o 2023-03-27T12:39:19,496 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-03-27T12:39:19,501 Created temporary directory: /tmp/pip-ephem-wheel-cache-c4p045qw 2023-03-27T12:39:19,548 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-03-27T12:39:19,553 2 location(s) to search for versions of bonndit: 2023-03-27T12:39:19,553 * https://pypi.org/simple/bonndit/ 2023-03-27T12:39:19,553 * https://www.piwheels.org/simple/bonndit/ 2023-03-27T12:39:19,554 Fetching project page and analyzing links: https://pypi.org/simple/bonndit/ 2023-03-27T12:39:19,555 Getting page https://pypi.org/simple/bonndit/ 2023-03-27T12:39:19,557 Found index url https://pypi.org/simple 2023-03-27T12:39:19,614 Fetched page https://pypi.org/simple/bonndit/ as application/vnd.pypi.simple.v1+json 2023-03-27T12:39:19,617 Skipping link: No binaries permitted for bonndit: https://files.pythonhosted.org/packages/de/ec/c250e9bf384e47df46be1900426b5876b993dd68e9cef6cc7919dcfffbfe/bonndit-0.1.1-py3-none-any.whl (from https://pypi.org/simple/bonndit/) 2023-03-27T12:39:19,617 Found link https://files.pythonhosted.org/packages/86/ae/5aad212b52322641b1cfcfd6b223d370e4de2d24f4f7a90083ce50098391/bonndit-0.1.1.tar.gz (from https://pypi.org/simple/bonndit/), version: 0.1.1 2023-03-27T12:39:19,618 Skipping link: No binaries permitted for bonndit: https://files.pythonhosted.org/packages/4c/7a/e70a143e1655cf9362acbb66d43996eee01d5e64251195367ad0a58b3627/bonndit-0.1.2-py3-none-any.whl (from https://pypi.org/simple/bonndit/) 2023-03-27T12:39:19,618 Found link https://files.pythonhosted.org/packages/f6/1e/f04916ccb161e7d07eb41fe2c08639fbdc9a9317f29f73af6a8d2696f181/bonndit-0.1.2.tar.gz (from https://pypi.org/simple/bonndit/), version: 0.1.2 2023-03-27T12:39:19,618 Found link https://files.pythonhosted.org/packages/09/ca/c1505615ba53b76587cf2f1faf023731da65f45e4795d70e4a1820028e34/bonndit-0.3.0.tar.gz (from https://pypi.org/simple/bonndit/), version: 0.3.0 2023-03-27T12:39:19,619 Found link https://files.pythonhosted.org/packages/86/f3/53316ae704e0b3f791972319575d0463206d748e01e42c97d92670f5739c/bonndit-0.3.1.tar.gz (from https://pypi.org/simple/bonndit/), version: 0.3.1 2023-03-27T12:39:19,619 Fetching project page and analyzing links: https://www.piwheels.org/simple/bonndit/ 2023-03-27T12:39:19,620 Getting page https://www.piwheels.org/simple/bonndit/ 2023-03-27T12:39:19,621 Found index url https://www.piwheels.org/simple 2023-03-27T12:39:19,821 Fetched page https://www.piwheels.org/simple/bonndit/ as text/html 2023-03-27T12:39:19,822 Skipping link: No binaries permitted for bonndit: https://www.piwheels.org/simple/bonndit/bonndit-0.1.2-py3-none-any.whl#sha256=bebfb474cc98f74ad4bde6b6f608db10d21a6dd2238cde69c3b52a4b56130083 (from https://www.piwheels.org/simple/bonndit/) 2023-03-27T12:39:19,823 Skipping link: No binaries permitted for bonndit: https://www.piwheels.org/simple/bonndit/bonndit-0.1.1-py3-none-any.whl#sha256=065f09464a34f2dc9047b6dec34e7631aa19911bfe4018147205eadff9854c7f (from https://www.piwheels.org/simple/bonndit/) 2023-03-27T12:39:19,823 Skipping link: not a file: https://www.piwheels.org/simple/bonndit/ 2023-03-27T12:39:19,823 Skipping link: not a file: https://pypi.org/simple/bonndit/ 2023-03-27T12:39:19,844 Given no hashes to check 1 links for project 'bonndit': discarding no candidates 2023-03-27T12:39:19,864 Collecting bonndit==0.3.1 2023-03-27T12:39:19,866 Created temporary directory: /tmp/pip-unpack-vtjj4ot3 2023-03-27T12:39:19,918 Downloading bonndit-0.3.1.tar.gz (331 kB) 2023-03-27T12:39:20,519 Added bonndit==0.3.1 from https://files.pythonhosted.org/packages/86/f3/53316ae704e0b3f791972319575d0463206d748e01e42c97d92670f5739c/bonndit-0.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-0p4672cx' 2023-03-27T12:39:20,530 Created temporary directory: /tmp/pip-build-env-9gncx2y_ 2023-03-27T12:39:20,543 Installing build dependencies: started 2023-03-27T12:39:20,544 Running command pip subprocess to install build dependencies 2023-03-27T12:39:22,079 Using pip 23.0.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-03-27T12:39:22,849 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-03-27T12:39:22,883 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-03-27T12:39:24,807 Collecting setuptools 2023-03-27T12:39:24,939 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.6.0-py3-none-any.whl (1.1 MB) 2023-03-27T12:39:25,248 Collecting wheel 2023-03-27T12:39:25,272 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-03-27T12:39:26,826 Collecting Cython 2023-03-27T12:39:27,584 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.33-cp39-cp39-linux_armv7l.whl (5.0 MB) 2023-03-27T12:39:29,083 Collecting numpy 2023-03-27T12:39:30,465 Using cached https://www.piwheels.org/simple/numpy/numpy-1.24.2-cp39-cp39-linux_armv7l.whl (12.3 MB) 2023-03-27T12:39:31,135 Collecting findblas 2023-03-27T12:39:31,168 Using cached https://www.piwheels.org/simple/findblas/findblas-0.1.21-py3-none-any.whl (24 kB) 2023-03-27T12:39:34,078 Installing collected packages: findblas, wheel, setuptools, numpy, Cython 2023-03-27T12:39:34,451 Creating /tmp/pip-build-env-9gncx2y_/overlay/bin 2023-03-27T12:39:34,454 changing mode of /tmp/pip-build-env-9gncx2y_/overlay/bin/wheel to 755 2023-03-27T12:39:47,829 changing mode of /tmp/pip-build-env-9gncx2y_/overlay/bin/f2py to 755 2023-03-27T12:39:47,833 changing mode of /tmp/pip-build-env-9gncx2y_/overlay/bin/f2py3 to 755 2023-03-27T12:39:47,837 changing mode of /tmp/pip-build-env-9gncx2y_/overlay/bin/f2py3.9 to 755 2023-03-27T12:39:51,311 changing mode of /tmp/pip-build-env-9gncx2y_/overlay/bin/cygdb to 755 2023-03-27T12:39:51,314 changing mode of /tmp/pip-build-env-9gncx2y_/overlay/bin/cython to 755 2023-03-27T12:39:51,317 changing mode of /tmp/pip-build-env-9gncx2y_/overlay/bin/cythonize to 755 2023-03-27T12:39:51,357 Successfully installed Cython-0.29.33 findblas-0.1.21 numpy-1.24.2 setuptools-67.6.0 wheel-0.40.0 2023-03-27T12:39:52,082 Installing build dependencies: finished with status 'done' 2023-03-27T12:39:52,099 Getting requirements to build wheel: started 2023-03-27T12:39:52,100 Running command Getting requirements to build wheel 2023-03-27T12:39:57,571 warning: src/bonndit/directions/csd_peaks.pyx:15:0: Unused entry 'dtype_signed' 2023-03-27T12:39:57,681 warning: src/bonndit/directions/csd_peaks.pyx:247:11: Index should be typed for more efficient access 2023-03-27T12:40:01,374 warning: src/bonndit/directions/fodfapprox.pyx:59:19: Unused entry 'k' 2023-03-27T12:40:01,374 warning: src/bonndit/directions/fodfapprox.pyx:64:13: Unused entry 'neighbors_count' 2023-03-27T12:40:01,375 warning: src/bonndit/directions/fodfapprox.pyx:73:23: Unused entry 'vs' 2023-03-27T12:40:01,375 warning: src/bonndit/directions/fodfapprox.pyx:79:19: Unused entry 'norm' 2023-03-27T12:40:01,375 warning: src/bonndit/directions/fodfapprox.pyx:80:19: Unused entry 'res' 2023-03-27T12:40:01,375 warning: src/bonndit/directions/fodfapprox.pyx:82:22: Unused entry 'tens_average' 2023-03-27T12:40:01,375 warning: src/bonndit/directions/fodfapprox.pyx:83:22: Unused entry 'pen_act' 2023-03-27T12:40:01,375 warning: src/bonndit/directions/fodfapprox.pyx:84:8: Unused entry 'three_matrix' 2023-03-27T12:40:01,375 warning: src/bonndit/directions/fodfapprox.pyx:85:19: Unused entry 'three_vector' 2023-03-27T12:40:01,376 warning: src/bonndit/directions/fodfapprox.pyx:85:64: Unused entry 'one_vector' 2023-03-27T12:40:01,376 warning: src/bonndit/directions/fodfapprox.pyx:86:21: Unused entry 'three_vector_placeholder' 2023-03-27T12:40:01,376 warning: src/bonndit/directions/fodfapprox.pyx:105:40: Unused entry 'k' 2023-03-27T12:40:01,376 warning: src/bonndit/directions/fodfapprox.pyx:106:40: Unused entry 'k' 2023-03-27T12:40:04,938 warning: src/bonndit/filter/filter.pyx:135:66: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2023-03-27T12:40:04,939 warning: src/bonndit/filter/filter.pyx:137:66: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2023-03-27T12:40:04,940 warning: src/bonndit/filter/filter.pyx:139:66: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2023-03-27T12:40:04,944 warning: src/bonndit/filter/filter.pyx:152:79: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2023-03-27T12:40:04,944 warning: src/bonndit/filter/filter.pyx:152:32: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2023-03-27T12:40:04,945 warning: src/bonndit/filter/filter.pyx:153:44: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2023-03-27T12:40:04,946 warning: src/bonndit/filter/filter.pyx:153:92: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2023-03-27T12:40:04,946 warning: src/bonndit/filter/filter.pyx:154:131: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2023-03-27T12:40:04,951 warning: src/bonndit/filter/filter.pyx:165:89: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2023-03-27T12:40:04,951 warning: src/bonndit/filter/filter.pyx:165:37: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2023-03-27T12:40:19,440 warning: src/bonndit/tracking/alignedDirection.pyx:389:28: local variable 'kappa_value' referenced before assignment 2023-03-27T12:40:28,234 warning: src/bonndit/tracking/interpolation.pyx:112:15: Unused entry 'zero' 2023-03-27T12:40:28,503 warning: src/bonndit/tracking/interpolation.pyx:463:24: Unused entry 'l' 2023-03-27T12:40:28,503 warning: src/bonndit/tracking/interpolation.pyx:463:27: Unused entry 'z' 2023-03-27T12:40:28,509 warning: src/bonndit/tracking/interpolation.pyx:487:20: Unused entry 'l' 2023-03-27T12:40:28,509 warning: src/bonndit/tracking/interpolation.pyx:487:34: Unused entry 'best_min' 2023-03-27T12:40:28,509 warning: src/bonndit/tracking/interpolation.pyx:488:28: Unused entry 'best_angle' 2023-03-27T12:40:28,512 warning: src/bonndit/tracking/interpolation.pyx:577:11: Unused entry 'z' 2023-03-27T12:40:28,512 warning: src/bonndit/tracking/interpolation.pyx:577:14: Unused entry 'i' 2023-03-27T12:40:31,912 /tmp/pip-build-env-9gncx2y_/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-dj51p39o/bonndit_2355b06d54d740deabc206b88571c76f/src/bonndit/tracking/kalman/kalman.pxd 2023-03-27T12:40:31,912 tree = Parsing.p_module(s, pxd, full_module_name) 2023-03-27T12:40:36,011 /tmp/pip-build-env-9gncx2y_/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-dj51p39o/bonndit_2355b06d54d740deabc206b88571c76f/src/bonndit/tracking/kalman/model.pxd 2023-03-27T12:40:36,011 tree = Parsing.p_module(s, pxd, full_module_name) 2023-03-27T12:40:41,966 warning: src/bonndit/tracking/stopping.pyx:86:2: Unused entry 'x' 2023-03-27T12:40:41,967 warning: src/bonndit/tracking/stopping.pyx:87:2: Unused entry 'y' 2023-03-27T12:40:41,967 warning: src/bonndit/tracking/stopping.pyx:88:2: Unused entry 'z' 2023-03-27T12:40:41,967 warning: src/bonndit/tracking/stopping.pyx:109:12: Unused entry 'i' 2023-03-27T12:40:41,968 warning: src/bonndit/tracking/stopping.pyx:109:16: Unused entry 'j' 2023-03-27T12:40:41,968 warning: src/bonndit/tracking/stopping.pyx:109:20: Unused entry 'k' 2023-03-27T12:40:48,603 /tmp/pip-build-env-9gncx2y_/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-dj51p39o/bonndit_2355b06d54d740deabc206b88571c76f/src/bonndit/utilc/blas_lapack.pxd 2023-03-27T12:40:48,603 tree = Parsing.p_module(s, pxd, full_module_name) 2023-03-27T12:41:06,627 ['bonndit', 'bonndit.utils', 'bonndit.filter', 'bonndit.tracking', 'bonndit.directions', 'bonndit.utilc', 'bonndit.data', 'bonndit.deconv', 'bonndit.pmodels', 'bonndit.tracking.kalman'] 2023-03-27T12:41:06,627 Compiling src/bonndit/utilc/blas_lapack.pyx because it changed. 2023-03-27T12:41:06,628 Compiling src/bonndit/utilc/cython_helpers.pyx because it changed. 2023-03-27T12:41:06,628 Compiling src/bonndit/utilc/hota.pyx because it changed. 2023-03-27T12:41:06,628 Compiling src/bonndit/utilc/trilinear.pyx because it changed. 2023-03-27T12:41:06,628 Compiling src/bonndit/utilc/structures.pyx because it changed. 2023-03-27T12:41:06,628 Compiling src/bonndit/utilc/penalty_spherical.pyx because it changed. 2023-03-27T12:41:06,629 Compiling src/bonndit/utilc/lowrank.pyx because it changed. 2023-03-27T12:41:06,629 Compiling src/bonndit/directions/fodfapprox.pyx because it changed. 2023-03-27T12:41:06,629 Compiling src/bonndit/tracking/ItoW.pyx because it changed. 2023-03-27T12:41:06,629 Compiling src/bonndit/tracking/alignedDirection.pyx because it changed. 2023-03-27T12:41:06,629 Compiling src/bonndit/tracking/kalman/model.pyx because it changed. 2023-03-27T12:41:06,629 Compiling src/bonndit/tracking/kalman/kalman.pyx because it changed. 2023-03-27T12:41:06,630 Compiling src/bonndit/tracking/interpolation.pyx because it changed. 2023-03-27T12:41:06,630 Compiling src/bonndit/tracking/integration.pyx because it changed. 2023-03-27T12:41:06,630 Compiling src/bonndit/tracking/stopping.pyx because it changed. 2023-03-27T12:41:06,630 Compiling src/bonndit/tracking/tracking_prob.pyx because it changed. 2023-03-27T12:41:06,630 Compiling src/bonndit/pmodels/means.pyx because it changed. 2023-03-27T12:41:06,630 Compiling src/bonndit/pmodels/model_avg.pyx because it changed. 2023-03-27T12:41:06,631 Compiling src/bonndit/filter/filter.pyx because it changed. 2023-03-27T12:41:06,631 Compiling src/bonndit/directions/csd_peaks.pyx because it changed. 2023-03-27T12:41:06,631 [ 1/20] Cythonizing src/bonndit/directions/csd_peaks.pyx 2023-03-27T12:41:06,631 [ 2/20] Cythonizing src/bonndit/directions/fodfapprox.pyx 2023-03-27T12:41:06,631 [ 3/20] Cythonizing src/bonndit/filter/filter.pyx 2023-03-27T12:41:06,632 [ 4/20] Cythonizing src/bonndit/pmodels/means.pyx 2023-03-27T12:41:06,632 [ 5/20] Cythonizing src/bonndit/pmodels/model_avg.pyx 2023-03-27T12:41:06,632 [ 6/20] Cythonizing src/bonndit/tracking/ItoW.pyx 2023-03-27T12:41:06,632 [ 7/20] Cythonizing src/bonndit/tracking/alignedDirection.pyx 2023-03-27T12:41:06,632 [ 8/20] Cythonizing src/bonndit/tracking/integration.pyx 2023-03-27T12:41:06,633 [ 9/20] Cythonizing src/bonndit/tracking/interpolation.pyx 2023-03-27T12:41:06,633 [10/20] Cythonizing src/bonndit/tracking/kalman/kalman.pyx 2023-03-27T12:41:06,633 [11/20] Cythonizing src/bonndit/tracking/kalman/model.pyx 2023-03-27T12:41:06,633 [12/20] Cythonizing src/bonndit/tracking/stopping.pyx 2023-03-27T12:41:06,633 [13/20] Cythonizing src/bonndit/tracking/tracking_prob.pyx 2023-03-27T12:41:06,633 [14/20] Cythonizing src/bonndit/utilc/blas_lapack.pyx 2023-03-27T12:41:06,634 [15/20] Cythonizing src/bonndit/utilc/cython_helpers.pyx 2023-03-27T12:41:06,634 [16/20] Cythonizing src/bonndit/utilc/hota.pyx 2023-03-27T12:41:06,634 [17/20] Cythonizing src/bonndit/utilc/lowrank.pyx 2023-03-27T12:41:06,634 [18/20] Cythonizing src/bonndit/utilc/penalty_spherical.pyx 2023-03-27T12:41:06,634 [19/20] Cythonizing src/bonndit/utilc/structures.pyx 2023-03-27T12:41:06,635 [20/20] Cythonizing src/bonndit/utilc/trilinear.pyx 2023-03-27T12:41:07,443 Getting requirements to build wheel: finished with status 'done' 2023-03-27T12:41:07,476 Installing backend dependencies: started 2023-03-27T12:41:07,477 Running command pip subprocess to install backend dependencies 2023-03-27T12:41:09,436 Using pip 23.0.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-03-27T12:41:10,414 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-03-27T12:41:10,462 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-03-27T12:41:10,990 Collecting pytest-runner 2023-03-27T12:41:11,051 Using cached https://www.piwheels.org/simple/pytest-runner/pytest_runner-6.0.0-py3-none-any.whl (7.2 kB) 2023-03-27T12:41:14,109 Installing collected packages: pytest-runner 2023-03-27T12:41:14,173 Successfully installed pytest-runner-6.0.0 2023-03-27T12:41:14,743 Installing backend dependencies: finished with status 'done' 2023-03-27T12:41:14,748 Created temporary directory: /tmp/pip-modern-metadata-coc001hc 2023-03-27T12:41:14,753 Preparing metadata (pyproject.toml): started 2023-03-27T12:41:14,754 Running command Preparing metadata (pyproject.toml) 2023-03-27T12:41:17,266 ['bonndit', 'bonndit.utils', 'bonndit.filter', 'bonndit.tracking', 'bonndit.directions', 'bonndit.utilc', 'bonndit.data', 'bonndit.deconv', 'bonndit.pmodels', 'bonndit.tracking.kalman'] 2023-03-27T12:41:17,433 running dist_info 2023-03-27T12:41:17,466 creating /tmp/pip-modern-metadata-coc001hc/bonndit.egg-info 2023-03-27T12:41:17,475 writing /tmp/pip-modern-metadata-coc001hc/bonndit.egg-info/PKG-INFO 2023-03-27T12:41:17,479 writing dependency_links to /tmp/pip-modern-metadata-coc001hc/bonndit.egg-info/dependency_links.txt 2023-03-27T12:41:17,483 writing top-level names to /tmp/pip-modern-metadata-coc001hc/bonndit.egg-info/top_level.txt 2023-03-27T12:41:17,486 writing manifest file '/tmp/pip-modern-metadata-coc001hc/bonndit.egg-info/SOURCES.txt' 2023-03-27T12:41:17,573 reading manifest file '/tmp/pip-modern-metadata-coc001hc/bonndit.egg-info/SOURCES.txt' 2023-03-27T12:41:17,576 reading manifest template 'MANIFEST.in' 2023-03-27T12:41:17,683 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-03-27T12:41:17,684 warning: no previously-included files matching '*.py[co]' found under directory '*' 2023-03-27T12:41:17,717 warning: no files found matching '*.jpg' under directory 'docs' 2023-03-27T12:41:17,726 warning: no files found matching '*.png' under directory 'docs' 2023-03-27T12:41:17,734 warning: no files found matching '*.gif' under directory 'docs' 2023-03-27T12:41:17,735 adding license file 'LICENSE' 2023-03-27T12:41:17,735 adding license file 'AUTHORS.rst' 2023-03-27T12:41:17,746 writing manifest file '/tmp/pip-modern-metadata-coc001hc/bonndit.egg-info/SOURCES.txt' 2023-03-27T12:41:17,748 creating '/tmp/pip-modern-metadata-coc001hc/bonndit-0.3.1.dist-info' 2023-03-27T12:41:18,118 Preparing metadata (pyproject.toml): finished with status 'done' 2023-03-27T12:41:18,128 Source in /tmp/pip-wheel-dj51p39o/bonndit_2355b06d54d740deabc206b88571c76f has version 0.3.1, which satisfies requirement bonndit==0.3.1 from https://files.pythonhosted.org/packages/86/f3/53316ae704e0b3f791972319575d0463206d748e01e42c97d92670f5739c/bonndit-0.3.1.tar.gz 2023-03-27T12:41:18,129 Removed bonndit==0.3.1 from https://files.pythonhosted.org/packages/86/f3/53316ae704e0b3f791972319575d0463206d748e01e42c97d92670f5739c/bonndit-0.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-0p4672cx' 2023-03-27T12:41:18,135 Created temporary directory: /tmp/pip-unpack-baxrhbgk 2023-03-27T12:41:18,136 Building wheels for collected packages: bonndit 2023-03-27T12:41:18,144 Created temporary directory: /tmp/pip-wheel-1jebu0di 2023-03-27T12:41:18,144 Destination directory: /tmp/pip-wheel-1jebu0di 2023-03-27T12:41:18,148 Building wheel for bonndit (pyproject.toml): started 2023-03-27T12:41:18,149 Running command Building wheel for bonndit (pyproject.toml) 2023-03-27T12:41:20,177 ['bonndit', 'bonndit.utils', 'bonndit.filter', 'bonndit.tracking', 'bonndit.directions', 'bonndit.utilc', 'bonndit.data', 'bonndit.deconv', 'bonndit.pmodels', 'bonndit.tracking.kalman'] 2023-03-27T12:41:20,362 running bdist_wheel 2023-03-27T12:41:20,389 running build 2023-03-27T12:41:20,389 running build_py 2023-03-27T12:41:20,401 creating build 2023-03-27T12:41:20,401 creating build/lib.linux-armv7l-cpython-39 2023-03-27T12:41:20,402 creating build/lib.linux-armv7l-cpython-39/bonndit 2023-03-27T12:41:20,404 copying src/bonndit/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit 2023-03-27T12:41:20,408 creating build/lib.linux-armv7l-cpython-39/bonndit/utils 2023-03-27T12:41:20,409 copying src/bonndit/utils/mmath.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils 2023-03-27T12:41:20,411 copying src/bonndit/utils/nrrd.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils 2023-03-27T12:41:20,415 copying src/bonndit/utils/esh.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils 2023-03-27T12:41:20,418 copying src/bonndit/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils 2023-03-27T12:41:20,421 copying src/bonndit/utils/storage.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils 2023-03-27T12:41:20,424 copying src/bonndit/utils/multivoxel.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils 2023-03-27T12:41:20,426 copying src/bonndit/utils/fields.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils 2023-03-27T12:41:20,430 copying src/bonndit/utils/io.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils 2023-03-27T12:41:20,434 copying src/bonndit/utils/gradients.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils 2023-03-27T12:41:20,438 copying src/bonndit/utils/shore.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils 2023-03-27T12:41:20,441 copying src/bonndit/utils/vector.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils 2023-03-27T12:41:20,443 copying src/bonndit/utils/constants.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils 2023-03-27T12:41:20,447 copying src/bonndit/utils/tensor.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils 2023-03-27T12:41:20,449 copying src/bonndit/utils/dwmri.py -> build/lib.linux-armv7l-cpython-39/bonndit/utils 2023-03-27T12:41:20,453 creating build/lib.linux-armv7l-cpython-39/bonndit/filter 2023-03-27T12:41:20,454 copying src/bonndit/filter/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/filter 2023-03-27T12:41:20,456 creating build/lib.linux-armv7l-cpython-39/bonndit/tracking 2023-03-27T12:41:20,457 copying src/bonndit/tracking/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/tracking 2023-03-27T12:41:20,460 creating build/lib.linux-armv7l-cpython-39/bonndit/directions 2023-03-27T12:41:20,461 copying src/bonndit/directions/watsonfit.py -> build/lib.linux-armv7l-cpython-39/bonndit/directions 2023-03-27T12:41:20,464 copying src/bonndit/directions/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/directions 2023-03-27T12:41:20,467 creating build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,468 copying src/bonndit/utilc/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,477 creating build/lib.linux-armv7l-cpython-39/bonndit/data 2023-03-27T12:41:20,478 copying src/bonndit/data/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/data 2023-03-27T12:41:20,478 creating build/lib.linux-armv7l-cpython-39/bonndit/deconv 2023-03-27T12:41:20,478 copying src/bonndit/deconv/shdeconv.py -> build/lib.linux-armv7l-cpython-39/bonndit/deconv 2023-03-27T12:41:20,481 copying src/bonndit/deconv/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/deconv 2023-03-27T12:41:20,483 copying src/bonndit/deconv/multivoxel.py -> build/lib.linux-armv7l-cpython-39/bonndit/deconv 2023-03-27T12:41:20,485 copying src/bonndit/deconv/base.py -> build/lib.linux-armv7l-cpython-39/bonndit/deconv 2023-03-27T12:41:20,487 copying src/bonndit/deconv/dki.py -> build/lib.linux-armv7l-cpython-39/bonndit/deconv 2023-03-27T12:41:20,490 copying src/bonndit/deconv/shoredeconv.py -> build/lib.linux-armv7l-cpython-39/bonndit/deconv 2023-03-27T12:41:20,494 creating build/lib.linux-armv7l-cpython-39/bonndit/pmodels 2023-03-27T12:41:20,495 copying src/bonndit/pmodels/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/pmodels 2023-03-27T12:41:20,498 creating build/lib.linux-armv7l-cpython-39/bonndit/tracking/kalman 2023-03-27T12:41:20,499 copying src/bonndit/tracking/kalman/__init__.py -> build/lib.linux-armv7l-cpython-39/bonndit/tracking/kalman 2023-03-27T12:41:20,501 running egg_info 2023-03-27T12:41:20,533 writing src/bonndit.egg-info/PKG-INFO 2023-03-27T12:41:20,538 writing dependency_links to src/bonndit.egg-info/dependency_links.txt 2023-03-27T12:41:20,542 writing top-level names to src/bonndit.egg-info/top_level.txt 2023-03-27T12:41:20,577 reading manifest file 'src/bonndit.egg-info/SOURCES.txt' 2023-03-27T12:41:20,584 reading manifest template 'MANIFEST.in' 2023-03-27T12:41:20,680 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-03-27T12:41:20,682 warning: no previously-included files matching '*.py[co]' found under directory '*' 2023-03-27T12:41:20,717 warning: no files found matching '*.jpg' under directory 'docs' 2023-03-27T12:41:20,719 warning: no files found matching '*.png' under directory 'docs' 2023-03-27T12:41:20,725 warning: no files found matching '*.gif' under directory 'docs' 2023-03-27T12:41:20,726 adding license file 'LICENSE' 2023-03-27T12:41:20,726 adding license file 'AUTHORS.rst' 2023-03-27T12:41:20,739 writing manifest file 'src/bonndit.egg-info/SOURCES.txt' 2023-03-27T12:41:20,764 copying src/bonndit/filter/filter.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/filter 2023-03-27T12:41:20,768 copying src/bonndit/tracking/ItoW.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/tracking 2023-03-27T12:41:20,771 copying src/bonndit/tracking/ItoW.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking 2023-03-27T12:41:20,773 copying src/bonndit/tracking/alignedDirection.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/tracking 2023-03-27T12:41:20,776 copying src/bonndit/tracking/alignedDirection.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking 2023-03-27T12:41:20,779 copying src/bonndit/tracking/alignedDirection_struct.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking 2023-03-27T12:41:20,781 copying src/bonndit/tracking/integration.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/tracking 2023-03-27T12:41:20,784 copying src/bonndit/tracking/integration.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking 2023-03-27T12:41:20,786 copying src/bonndit/tracking/interpolation.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/tracking 2023-03-27T12:41:20,788 copying src/bonndit/tracking/interpolation.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking 2023-03-27T12:41:20,793 copying src/bonndit/tracking/stopping.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/tracking 2023-03-27T12:41:20,795 copying src/bonndit/tracking/stopping.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking 2023-03-27T12:41:20,799 copying src/bonndit/tracking/tracking_prob.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking 2023-03-27T12:41:20,802 copying src/bonndit/directions/__init__.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/directions 2023-03-27T12:41:20,805 copying src/bonndit/directions/__init__.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/directions 2023-03-27T12:41:20,807 copying src/bonndit/directions/csd_peaks.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/directions 2023-03-27T12:41:20,811 copying src/bonndit/directions/fodfapprox.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/directions 2023-03-27T12:41:20,814 copying src/bonndit/directions/sphere.npz -> build/lib.linux-armv7l-cpython-39/bonndit/directions 2023-03-27T12:41:20,818 copying src/bonndit/utilc/__init__.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,820 copying src/bonndit/utilc/average.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,823 copying src/bonndit/utilc/blas_lapack.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,826 copying src/bonndit/utilc/blas_lapack.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,829 copying src/bonndit/utilc/cython_helpers.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,834 copying src/bonndit/utilc/cython_helpers.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,837 copying src/bonndit/utilc/hota.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,839 copying src/bonndit/utilc/hota.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,842 copying src/bonndit/utilc/lowrank.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,844 copying src/bonndit/utilc/lowrank.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,847 copying src/bonndit/utilc/penalty_spherical.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,849 copying src/bonndit/utilc/penalty_spherical.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,852 copying src/bonndit/utilc/structures.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,855 copying src/bonndit/utilc/structures.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,857 copying src/bonndit/utilc/trilinear.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,859 copying src/bonndit/utilc/trilinear.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/utilc 2023-03-27T12:41:20,861 copying src/bonndit/data/CC.pts -> build/lib.linux-armv7l-cpython-39/bonndit/data 2023-03-27T12:41:20,876 copying src/bonndit/pmodels/means.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/pmodels 2023-03-27T12:41:20,879 copying src/bonndit/pmodels/means.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/pmodels 2023-03-27T12:41:20,881 copying src/bonndit/pmodels/model_avg.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/pmodels 2023-03-27T12:41:20,884 copying src/bonndit/tracking/kalman/kalman.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/tracking/kalman 2023-03-27T12:41:20,886 copying src/bonndit/tracking/kalman/kalman.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking/kalman 2023-03-27T12:41:20,889 copying src/bonndit/tracking/kalman/model.pxd -> build/lib.linux-armv7l-cpython-39/bonndit/tracking/kalman 2023-03-27T12:41:20,892 copying src/bonndit/tracking/kalman/model.pyx -> build/lib.linux-armv7l-cpython-39/bonndit/tracking/kalman 2023-03-27T12:41:20,902 running build_ext 2023-03-27T12:41:23,030 Installation: Using BLAS library found in: 2023-03-27T12:41:23,031 /usr/lib/arm-linux-gnueabihf/libatlas.so 2023-03-27T12:41:23,033 building 'bonndit.utilc.blas_lapack' extension 2023-03-27T12:41:23,033 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-03-27T12:41:23,034 creating build/temp.linux-armv7l-cpython-39 2023-03-27T12:41:23,035 creating build/temp.linux-armv7l-cpython-39/src 2023-03-27T12:41:23,035 creating build/temp.linux-armv7l-cpython-39/src/bonndit 2023-03-27T12:41:23,035 creating build/temp.linux-armv7l-cpython-39/src/bonndit/utilc 2023-03-27T12:41:23,036 INFO: compile options: '-DHAS_ATLAS -DHAS_UNDERSCORES -I/tmp/pip-build-env-9gncx2y_/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/arm-linux-gnueabihf -I/tmp/pip-build-env-9gncx2y_/overlay/lib/python3.9/site-packages/findblas/ -I/usr/include/python3.9 -c' 2023-03-27T12:41:23,036 extra options: '-Wall -m64 -Ofast' 2023-03-27T12:41:23,037 INFO: arm-linux-gnueabihf-gcc: src/bonndit/utilc/blas_lapack.c 2023-03-27T12:41:23,055 arm-linux-gnueabihf-gcc: error: unrecognized command-line option ‘-m64’ 2023-03-27T12:41:23,060 error: Command "arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAS_ATLAS -DHAS_UNDERSCORES -I/tmp/pip-build-env-9gncx2y_/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/arm-linux-gnueabihf -I/tmp/pip-build-env-9gncx2y_/overlay/lib/python3.9/site-packages/findblas/ -I/usr/include/python3.9 -c src/bonndit/utilc/blas_lapack.c -o build/temp.linux-armv7l-cpython-39/src/bonndit/utilc/blas_lapack.o -Wall -m64 -Ofast" failed with exit status 1 2023-03-27T12:41:23,307 ERROR: [present-rich] Building wheel for bonndit (pyproject.toml) exited with 1 2023-03-27T12:41:23,329 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpq7hj6r57[/] 2023-03-27T12:41:23,329 [bold magenta]cwd[/]: /tmp/pip-wheel-dj51p39o/bonndit_2355b06d54d740deabc206b88571c76f 2023-03-27T12:41:23,329 Building wheel for bonndit (pyproject.toml): finished with status 'error' 2023-03-27T12:41:23,332 ERROR: Failed building wheel for bonndit 2023-03-27T12:41:23,336 Failed to build bonndit 2023-03-27T12:41:23,337 ERROR: Failed to build one or more wheels 2023-03-27T12:41:23,338 Exception information: 2023-03-27T12:41:23,338 Traceback (most recent call last): 2023-03-27T12:41:23,338 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2023-03-27T12:41:23,338 status = run_func(*args) 2023-03-27T12:41:23,338 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2023-03-27T12:41:23,338 return func(self, options, args) 2023-03-27T12:41:23,338 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 201, in run 2023-03-27T12:41:23,338 raise CommandError("Failed to build one or more wheels") 2023-03-27T12:41:23,338 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-03-27T12:41:23,343 Removed build tracker: '/tmp/pip-build-tracker-0p4672cx'