2023-03-27T16:19:47,148 Created temporary directory: /tmp/pip-ephem-wheel-cache-s2v57p10
2023-03-27T16:19:47,151 Created temporary directory: /tmp/pip-build-tracker-8_7owa1w
2023-03-27T16:19:47,152 Initialized build tracking at /tmp/pip-build-tracker-8_7owa1w
2023-03-27T16:19:47,152 Created build tracker: /tmp/pip-build-tracker-8_7owa1w
2023-03-27T16:19:47,152 Entered build tracker: /tmp/pip-build-tracker-8_7owa1w
2023-03-27T16:19:47,153 Created temporary directory: /tmp/pip-wheel-4cs0apy2
2023-03-27T16:19:47,158 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-27T16:19:47,162 Created temporary directory: /tmp/pip-ephem-wheel-cache-0ldy8d5j
2023-03-27T16:19:47,201 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-27T16:19:47,205 2 location(s) to search for versions of nnunetv2:
2023-03-27T16:19:47,205 * https://pypi.org/simple/nnunetv2/
2023-03-27T16:19:47,205 * https://www.piwheels.org/simple/nnunetv2/
2023-03-27T16:19:47,206 Fetching project page and analyzing links: https://pypi.org/simple/nnunetv2/
2023-03-27T16:19:47,206 Getting page https://pypi.org/simple/nnunetv2/
2023-03-27T16:19:47,208 Found index url https://pypi.org/simple
2023-03-27T16:19:47,262 Fetched page https://pypi.org/simple/nnunetv2/ as application/vnd.pypi.simple.v1+json
2023-03-27T16:19:47,264   Found link https://files.pythonhosted.org/packages/e9/76/b07d94295b8680333c267420cb8fe68780c1f0330b01f83de221e14398f8/nnunetv2-2.0.tar.gz (from https://pypi.org/simple/nnunetv2/), version: 2.0
2023-03-27T16:19:47,264   Found link https://files.pythonhosted.org/packages/ec/d6/1db7ccf9b55e60ef9f1201ce7086b69dc87e4a0ace0a9779d7763097ff4f/nnunetv2-2.1.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.1
2023-03-27T16:19:47,265 Fetching project page and analyzing links: https://www.piwheels.org/simple/nnunetv2/
2023-03-27T16:19:47,265 Getting page https://www.piwheels.org/simple/nnunetv2/
2023-03-27T16:19:47,266 Found index url https://www.piwheels.org/simple
2023-03-27T16:19:47,433 Fetched page https://www.piwheels.org/simple/nnunetv2/ as text/html
2023-03-27T16:19:47,435   Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.0-py3-none-any.whl#sha256=fdacc5b6c5ae86113368c37f25e21643894052a24c65235ffff6c37a0d1a7b31 (from https://www.piwheels.org/simple/nnunetv2/)
2023-03-27T16:19:47,435 Skipping link: not a file: https://www.piwheels.org/simple/nnunetv2/
2023-03-27T16:19:47,436 Skipping link: not a file: https://pypi.org/simple/nnunetv2/
2023-03-27T16:19:47,457 Given no hashes to check 1 links for project 'nnunetv2': discarding no candidates
2023-03-27T16:19:47,484 Collecting nnunetv2==2.1
2023-03-27T16:19:47,488   Created temporary directory: /tmp/pip-unpack-jwlzjiq5
2023-03-27T16:19:47,679   Downloading nnunetv2-2.1.tar.gz (149 kB)
2023-03-27T16:19:48,157   Added nnunetv2==2.1 from https://files.pythonhosted.org/packages/ec/d6/1db7ccf9b55e60ef9f1201ce7086b69dc87e4a0ace0a9779d7763097ff4f/nnunetv2-2.1.tar.gz to build tracker '/tmp/pip-build-tracker-8_7owa1w'
2023-03-27T16:19:48,159   Running setup.py (path:/tmp/pip-wheel-4cs0apy2/nnunetv2_f09867142af6404c8fde6b6777632aa7/setup.py) egg_info for package nnunetv2
2023-03-27T16:19:48,160   Created temporary directory: /tmp/pip-pip-egg-info-x_wi4x3t
2023-03-27T16:19:48,160   Preparing metadata (setup.py): started
2023-03-27T16:19:48,161   Running command python setup.py egg_info
2023-03-27T16:19:48,824   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:788: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2023-03-27T16:19:48,825     warnings.warn(
2023-03-27T16:19:49,043   running egg_info
2023-03-27T16:19:49,045   creating /tmp/pip-pip-egg-info-x_wi4x3t/nnunetv2.egg-info
2023-03-27T16:19:49,080   writing /tmp/pip-pip-egg-info-x_wi4x3t/nnunetv2.egg-info/PKG-INFO
2023-03-27T16:19:49,083   writing dependency_links to /tmp/pip-pip-egg-info-x_wi4x3t/nnunetv2.egg-info/dependency_links.txt
2023-03-27T16:19:49,086   writing entry points to /tmp/pip-pip-egg-info-x_wi4x3t/nnunetv2.egg-info/entry_points.txt
2023-03-27T16:19:49,088   writing requirements to /tmp/pip-pip-egg-info-x_wi4x3t/nnunetv2.egg-info/requires.txt
2023-03-27T16:19:49,090   writing top-level names to /tmp/pip-pip-egg-info-x_wi4x3t/nnunetv2.egg-info/top_level.txt
2023-03-27T16:19:49,091   writing manifest file '/tmp/pip-pip-egg-info-x_wi4x3t/nnunetv2.egg-info/SOURCES.txt'
2023-03-27T16:19:49,242   reading manifest file '/tmp/pip-pip-egg-info-x_wi4x3t/nnunetv2.egg-info/SOURCES.txt'
2023-03-27T16:19:49,244   adding license file 'LICENSE'
2023-03-27T16:19:49,253   writing manifest file '/tmp/pip-pip-egg-info-x_wi4x3t/nnunetv2.egg-info/SOURCES.txt'
2023-03-27T16:19:49,339   Preparing metadata (setup.py): finished with status 'done'
2023-03-27T16:19:49,346   Source in /tmp/pip-wheel-4cs0apy2/nnunetv2_f09867142af6404c8fde6b6777632aa7 has version 2.1, which satisfies requirement nnunetv2==2.1 from https://files.pythonhosted.org/packages/ec/d6/1db7ccf9b55e60ef9f1201ce7086b69dc87e4a0ace0a9779d7763097ff4f/nnunetv2-2.1.tar.gz
2023-03-27T16:19:49,347   Removed nnunetv2==2.1 from https://files.pythonhosted.org/packages/ec/d6/1db7ccf9b55e60ef9f1201ce7086b69dc87e4a0ace0a9779d7763097ff4f/nnunetv2-2.1.tar.gz from build tracker '/tmp/pip-build-tracker-8_7owa1w'
2023-03-27T16:19:49,355 Created temporary directory: /tmp/pip-unpack-x8nnjsiq
2023-03-27T16:19:49,356 Building wheels for collected packages: nnunetv2
2023-03-27T16:19:49,361   Created temporary directory: /tmp/pip-wheel-zh3qmo03
2023-03-27T16:19:49,361   Building wheel for nnunetv2 (setup.py): started
2023-03-27T16:19:49,362   Destination directory: /tmp/pip-wheel-zh3qmo03
2023-03-27T16:19:49,362   Running command python setup.py bdist_wheel
2023-03-27T16:19:49,968   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:788: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2023-03-27T16:19:49,969     warnings.warn(
2023-03-27T16:19:50,543   running bdist_wheel
2023-03-27T16:19:50,927   running build
2023-03-27T16:19:50,927   running build_py
2023-03-27T16:19:50,970   creating build
2023-03-27T16:19:50,970   creating build/lib
2023-03-27T16:19:50,971   creating build/lib/nnunetv2
2023-03-27T16:19:50,973   copying nnunetv2/configuration.py -> build/lib/nnunetv2
2023-03-27T16:19:50,975   copying nnunetv2/__init__.py -> build/lib/nnunetv2
2023-03-27T16:19:50,977   copying nnunetv2/paths.py -> build/lib/nnunetv2
2023-03-27T16:19:50,980   creating build/lib/nnunetv2/utilities
2023-03-27T16:19:50,981   copying nnunetv2/utilities/default_n_proc_DA.py -> build/lib/nnunetv2/utilities
2023-03-27T16:19:50,984   copying nnunetv2/utilities/get_network_from_plans.py -> build/lib/nnunetv2/utilities
2023-03-27T16:19:50,986   copying nnunetv2/utilities/tensor_utilities.py -> build/lib/nnunetv2/utilities
2023-03-27T16:19:50,988   copying nnunetv2/utilities/helpers.py -> build/lib/nnunetv2/utilities
2023-03-27T16:19:50,990   copying nnunetv2/utilities/json_export.py -> build/lib/nnunetv2/utilities
2023-03-27T16:19:50,992   copying nnunetv2/utilities/file_path_utilities.py -> build/lib/nnunetv2/utilities
2023-03-27T16:19:50,995   copying nnunetv2/utilities/overlay_plots.py -> build/lib/nnunetv2/utilities
2023-03-27T16:19:50,998   copying nnunetv2/utilities/__init__.py -> build/lib/nnunetv2/utilities
2023-03-27T16:19:50,999   copying nnunetv2/utilities/dataset_name_id_conversion.py -> build/lib/nnunetv2/utilities
2023-03-27T16:19:51,002   copying nnunetv2/utilities/ddp_allgather.py -> build/lib/nnunetv2/utilities
2023-03-27T16:19:51,004   copying nnunetv2/utilities/network_initialization.py -> build/lib/nnunetv2/utilities
2023-03-27T16:19:51,006   copying nnunetv2/utilities/find_class_by_name.py -> build/lib/nnunetv2/utilities
2023-03-27T16:19:51,008   copying nnunetv2/utilities/utils.py -> build/lib/nnunetv2/utilities
2023-03-27T16:19:51,010   copying nnunetv2/utilities/collate_outputs.py -> build/lib/nnunetv2/utilities
2023-03-27T16:19:51,013   creating build/lib/nnunetv2/dataset_conversion
2023-03-27T16:19:51,014   copying nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py -> build/lib/nnunetv2/dataset_conversion
2023-03-27T16:19:51,016   copying nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py -> build/lib/nnunetv2/dataset_conversion
2023-03-27T16:19:51,018   copying nnunetv2/dataset_conversion/Dataset137_BraTS21.py -> build/lib/nnunetv2/dataset_conversion
2023-03-27T16:19:51,020   copying nnunetv2/dataset_conversion/__init__.py -> build/lib/nnunetv2/dataset_conversion
2023-03-27T16:19:51,022   copying nnunetv2/dataset_conversion/generate_dataset_json.py -> build/lib/nnunetv2/dataset_conversion
2023-03-27T16:19:51,024   copying nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py -> build/lib/nnunetv2/dataset_conversion
2023-03-27T16:19:51,026   copying nnunetv2/dataset_conversion/convert_MSD_dataset.py -> build/lib/nnunetv2/dataset_conversion
2023-03-27T16:19:51,029   copying nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py -> build/lib/nnunetv2/dataset_conversion
2023-03-27T16:19:51,031   copying nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py -> build/lib/nnunetv2/dataset_conversion
2023-03-27T16:19:51,034   creating build/lib/nnunetv2/ensembling
2023-03-27T16:19:51,035   copying nnunetv2/ensembling/ensemble.py -> build/lib/nnunetv2/ensembling
2023-03-27T16:19:51,038   copying nnunetv2/ensembling/__init__.py -> build/lib/nnunetv2/ensembling
2023-03-27T16:19:51,041   creating build/lib/nnunetv2/batch_running
2023-03-27T16:19:51,043   copying nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py -> build/lib/nnunetv2/batch_running
2023-03-27T16:19:51,045   copying nnunetv2/batch_running/__init__.py -> build/lib/nnunetv2/batch_running
2023-03-27T16:19:51,048   copying nnunetv2/batch_running/collect_results_custom_Decathlon.py -> build/lib/nnunetv2/batch_running
2023-03-27T16:19:51,051   copying nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py -> build/lib/nnunetv2/batch_running
2023-03-27T16:19:51,054   creating build/lib/nnunetv2/postprocessing
2023-03-27T16:19:51,055   copying nnunetv2/postprocessing/__init__.py -> build/lib/nnunetv2/postprocessing
2023-03-27T16:19:51,058   copying nnunetv2/postprocessing/remove_connected_components.py -> build/lib/nnunetv2/postprocessing
2023-03-27T16:19:51,062   creating build/lib/nnunetv2/tests
2023-03-27T16:19:51,063   copying nnunetv2/tests/__init__.py -> build/lib/nnunetv2/tests
2023-03-27T16:19:51,066   creating build/lib/nnunetv2/model_sharing
2023-03-27T16:19:51,067   copying nnunetv2/model_sharing/model_download.py -> build/lib/nnunetv2/model_sharing
2023-03-27T16:19:51,070   copying nnunetv2/model_sharing/entry_points.py -> build/lib/nnunetv2/model_sharing
2023-03-27T16:19:51,073   copying nnunetv2/model_sharing/model_export.py -> build/lib/nnunetv2/model_sharing
2023-03-27T16:19:51,076   copying nnunetv2/model_sharing/model_import.py -> build/lib/nnunetv2/model_sharing
2023-03-27T16:19:51,079   copying nnunetv2/model_sharing/__init__.py -> build/lib/nnunetv2/model_sharing
2023-03-27T16:19:51,081   creating build/lib/nnunetv2/inference
2023-03-27T16:19:51,083   copying nnunetv2/inference/export_prediction.py -> build/lib/nnunetv2/inference
2023-03-27T16:19:51,086   copying nnunetv2/inference/__init__.py -> build/lib/nnunetv2/inference
2023-03-27T16:19:51,088   copying nnunetv2/inference/predict_from_raw_data.py -> build/lib/nnunetv2/inference
2023-03-27T16:19:51,092   copying nnunetv2/inference/sliding_window_prediction.py -> build/lib/nnunetv2/inference
2023-03-27T16:19:51,096   creating build/lib/nnunetv2/experiment_planning
2023-03-27T16:19:51,097   copying nnunetv2/experiment_planning/plan_and_preprocess_api.py -> build/lib/nnunetv2/experiment_planning
2023-03-27T16:19:51,100   copying nnunetv2/experiment_planning/verify_dataset_integrity.py -> build/lib/nnunetv2/experiment_planning
2023-03-27T16:19:51,103   copying nnunetv2/experiment_planning/__init__.py -> build/lib/nnunetv2/experiment_planning
2023-03-27T16:19:51,105   copying nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py -> build/lib/nnunetv2/experiment_planning
2023-03-27T16:19:51,109   creating build/lib/nnunetv2/evaluation
2023-03-27T16:19:51,111   copying nnunetv2/evaluation/find_best_configuration.py -> build/lib/nnunetv2/evaluation
2023-03-27T16:19:51,114   copying nnunetv2/evaluation/evaluate_predictions.py -> build/lib/nnunetv2/evaluation
2023-03-27T16:19:51,117   copying nnunetv2/evaluation/__init__.py -> build/lib/nnunetv2/evaluation
2023-03-27T16:19:51,119   copying nnunetv2/evaluation/accumulate_cv_results.py -> build/lib/nnunetv2/evaluation
2023-03-27T16:19:51,123   creating build/lib/nnunetv2/imageio
2023-03-27T16:19:51,124   copying nnunetv2/imageio/tif_reader_writer.py -> build/lib/nnunetv2/imageio
2023-03-27T16:19:51,127   copying nnunetv2/imageio/base_reader_writer.py -> build/lib/nnunetv2/imageio
2023-03-27T16:19:51,130   copying nnunetv2/imageio/nibabel_reader_writer.py -> build/lib/nnunetv2/imageio
2023-03-27T16:19:51,133   copying nnunetv2/imageio/reader_writer_registry.py -> build/lib/nnunetv2/imageio
2023-03-27T16:19:51,135   copying nnunetv2/imageio/simpleitk_reader_writer.py -> build/lib/nnunetv2/imageio
2023-03-27T16:19:51,138   copying nnunetv2/imageio/__init__.py -> build/lib/nnunetv2/imageio
2023-03-27T16:19:51,140   copying nnunetv2/imageio/natural_image_reager_writer.py -> build/lib/nnunetv2/imageio
2023-03-27T16:19:51,143   creating build/lib/nnunetv2/run
2023-03-27T16:19:51,145   copying nnunetv2/run/run_training.py -> build/lib/nnunetv2/run
2023-03-27T16:19:51,148   copying nnunetv2/run/__init__.py -> build/lib/nnunetv2/run
2023-03-27T16:19:51,150   copying nnunetv2/run/load_pretrained_weights.py -> build/lib/nnunetv2/run
2023-03-27T16:19:51,153   creating build/lib/nnunetv2/training
2023-03-27T16:19:51,154   copying nnunetv2/training/__init__.py -> build/lib/nnunetv2/training
2023-03-27T16:19:51,159   creating build/lib/nnunetv2/preprocessing
2023-03-27T16:19:51,161   copying nnunetv2/preprocessing/__init__.py -> build/lib/nnunetv2/preprocessing
2023-03-27T16:19:51,168   creating build/lib/nnunetv2/utilities/label_handling
2023-03-27T16:19:51,171   copying nnunetv2/utilities/label_handling/label_handling.py -> build/lib/nnunetv2/utilities/label_handling
2023-03-27T16:19:51,182   copying nnunetv2/utilities/label_handling/__init__.py -> build/lib/nnunetv2/utilities/label_handling
2023-03-27T16:19:51,184   creating build/lib/nnunetv2/utilities/plans_handling
2023-03-27T16:19:51,185   copying nnunetv2/utilities/plans_handling/plans_handler.py -> build/lib/nnunetv2/utilities/plans_handling
2023-03-27T16:19:51,188   copying nnunetv2/utilities/plans_handling/__init__.py -> build/lib/nnunetv2/utilities/plans_handling
2023-03-27T16:19:51,191   creating build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-27T16:19:51,192   copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-27T16:19:51,194   copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-27T16:19:51,196   copying nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-27T16:19:51,198   copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-27T16:19:51,200   copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-27T16:19:51,202   creating build/lib/nnunetv2/batch_running/release_trainings
2023-03-27T16:19:51,203   copying nnunetv2/batch_running/release_trainings/__init__.py -> build/lib/nnunetv2/batch_running/release_trainings
2023-03-27T16:19:51,206   creating build/lib/nnunetv2/batch_running/benchmarking
2023-03-27T16:19:51,207   copying nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py -> build/lib/nnunetv2/batch_running/benchmarking
2023-03-27T16:19:51,209   copying nnunetv2/batch_running/benchmarking/__init__.py -> build/lib/nnunetv2/batch_running/benchmarking
2023-03-27T16:19:51,211   copying nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py -> build/lib/nnunetv2/batch_running/benchmarking
2023-03-27T16:19:51,214   creating build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-27T16:19:51,215   copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-27T16:19:51,216   copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-27T16:19:51,219   copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-27T16:19:51,222   creating build/lib/nnunetv2/tests/integration_tests
2023-03-27T16:19:51,223   copying nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py -> build/lib/nnunetv2/tests/integration_tests
2023-03-27T16:19:51,225   copying nnunetv2/tests/integration_tests/add_lowres_and_cascade.py -> build/lib/nnunetv2/tests/integration_tests
2023-03-27T16:19:51,228   copying nnunetv2/tests/integration_tests/__init__.py -> build/lib/nnunetv2/tests/integration_tests
2023-03-27T16:19:51,229   copying nnunetv2/tests/integration_tests/cleanup_integration_test.py -> build/lib/nnunetv2/tests/integration_tests
2023-03-27T16:19:51,232   creating build/lib/nnunetv2/experiment_planning/experiment_planners
2023-03-27T16:19:51,233   copying nnunetv2/experiment_planning/experiment_planners/__init__.py -> build/lib/nnunetv2/experiment_planning/experiment_planners
2023-03-27T16:19:51,235   copying nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py -> build/lib/nnunetv2/experiment_planning/experiment_planners
2023-03-27T16:19:51,239   copying nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py -> build/lib/nnunetv2/experiment_planning/experiment_planners
2023-03-27T16:19:51,241   copying nnunetv2/experiment_planning/experiment_planners/network_topology.py -> build/lib/nnunetv2/experiment_planning/experiment_planners
2023-03-27T16:19:51,244   creating build/lib/nnunetv2/experiment_planning/dataset_fingerprint
2023-03-27T16:19:51,245   copying nnunetv2/experiment_planning/dataset_fingerprint/__init__.py -> build/lib/nnunetv2/experiment_planning/dataset_fingerprint
2023-03-27T16:19:51,247   copying nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py -> build/lib/nnunetv2/experiment_planning/dataset_fingerprint
2023-03-27T16:19:51,250   creating build/lib/nnunetv2/experiment_planning/plans_for_pretraining
2023-03-27T16:19:51,251   copying nnunetv2/experiment_planning/plans_for_pretraining/__init__.py -> build/lib/nnunetv2/experiment_planning/plans_for_pretraining
2023-03-27T16:19:51,253   copying nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py -> build/lib/nnunetv2/experiment_planning/plans_for_pretraining
2023-03-27T16:19:51,256   creating build/lib/nnunetv2/training/lr_scheduler
2023-03-27T16:19:51,257   copying nnunetv2/training/lr_scheduler/polylr.py -> build/lib/nnunetv2/training/lr_scheduler
2023-03-27T16:19:51,260   copying nnunetv2/training/lr_scheduler/__init__.py -> build/lib/nnunetv2/training/lr_scheduler
2023-03-27T16:19:51,265   creating build/lib/nnunetv2/training/loss
2023-03-27T16:19:51,269   copying nnunetv2/training/loss/dice.py -> build/lib/nnunetv2/training/loss
2023-03-27T16:19:51,273   copying nnunetv2/training/loss/robust_ce_loss.py -> build/lib/nnunetv2/training/loss
2023-03-27T16:19:51,275   copying nnunetv2/training/loss/compound_losses.py -> build/lib/nnunetv2/training/loss
2023-03-27T16:19:51,278   copying nnunetv2/training/loss/deep_supervision.py -> build/lib/nnunetv2/training/loss
2023-03-27T16:19:51,280   copying nnunetv2/training/loss/__init__.py -> build/lib/nnunetv2/training/loss
2023-03-27T16:19:51,283   creating build/lib/nnunetv2/training/dataloading
2023-03-27T16:19:51,284   copying nnunetv2/training/dataloading/nnunet_dataset.py -> build/lib/nnunetv2/training/dataloading
2023-03-27T16:19:51,287   copying nnunetv2/training/dataloading/__init__.py -> build/lib/nnunetv2/training/dataloading
2023-03-27T16:19:51,288   copying nnunetv2/training/dataloading/data_loader_2d.py -> build/lib/nnunetv2/training/dataloading
2023-03-27T16:19:51,291   copying nnunetv2/training/dataloading/base_data_loader.py -> build/lib/nnunetv2/training/dataloading
2023-03-27T16:19:51,294   copying nnunetv2/training/dataloading/utils.py -> build/lib/nnunetv2/training/dataloading
2023-03-27T16:19:51,296   copying nnunetv2/training/dataloading/data_loader_3d.py -> build/lib/nnunetv2/training/dataloading
2023-03-27T16:19:51,299   creating build/lib/nnunetv2/training/logging
2023-03-27T16:19:51,300   copying nnunetv2/training/logging/nnunet_logger.py -> build/lib/nnunetv2/training/logging
2023-03-27T16:19:51,303   copying nnunetv2/training/logging/__init__.py -> build/lib/nnunetv2/training/logging
2023-03-27T16:19:51,306   creating build/lib/nnunetv2/training/nnUNetTrainer
2023-03-27T16:19:51,307   copying nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py -> build/lib/nnunetv2/training/nnUNetTrainer
2023-03-27T16:19:51,312   copying nnunetv2/training/nnUNetTrainer/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer
2023-03-27T16:19:51,315   creating build/lib/nnunetv2/training/data_augmentation
2023-03-27T16:19:51,316   copying nnunetv2/training/data_augmentation/compute_initial_patch_size.py -> build/lib/nnunetv2/training/data_augmentation
2023-03-27T16:19:51,318   copying nnunetv2/training/data_augmentation/__init__.py -> build/lib/nnunetv2/training/data_augmentation
2023-03-27T16:19:51,321   creating build/lib/nnunetv2/training/nnUNetTrainer/variants
2023-03-27T16:19:51,322   copying nnunetv2/training/nnUNetTrainer/variants/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants
2023-03-27T16:19:51,324   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling
2023-03-27T16:19:51,325   copying nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling
2023-03-27T16:19:51,328   copying nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling
2023-03-27T16:19:51,331   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length
2023-03-27T16:19:51,332   copying nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length
2023-03-27T16:19:51,334   copying nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length
2023-03-27T16:19:51,336   copying nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length
2023-03-27T16:19:51,339   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-27T16:19:51,340   copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-27T16:19:51,343   copying nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-27T16:19:51,345   copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-27T16:19:51,348   copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-27T16:19:51,352   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-27T16:19:51,353   copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-27T16:19:51,355   copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-27T16:19:51,358   copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-27T16:19:51,362   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2023-03-27T16:19:51,363   copying nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2023-03-27T16:19:51,366   copying nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2023-03-27T16:19:51,369   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-27T16:19:51,370   copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-27T16:19:51,373   copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-27T16:19:51,376   copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-27T16:19:51,379   copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-27T16:19:51,382   copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-27T16:19:51,385   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-27T16:19:51,387   copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-27T16:19:51,390   copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-27T16:19:51,392   copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-27T16:19:51,396   creating build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-27T16:19:51,397   copying nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-27T16:19:51,400   copying nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-27T16:19:51,402   copying nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-27T16:19:51,405   creating build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:51,407   copying nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:51,409   copying nnunetv2/training/data_augmentation/custom_transforms/masking.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:51,412   copying nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:51,415   copying nnunetv2/training/data_augmentation/custom_transforms/__init__.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:51,417   copying nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:51,419   copying nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:51,421   copying nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:51,424   copying nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:51,427   creating build/lib/nnunetv2/preprocessing/resampling
2023-03-27T16:19:51,428   copying nnunetv2/preprocessing/resampling/default_resampling.py -> build/lib/nnunetv2/preprocessing/resampling
2023-03-27T16:19:51,431   copying nnunetv2/preprocessing/resampling/__init__.py -> build/lib/nnunetv2/preprocessing/resampling
2023-03-27T16:19:51,433   copying nnunetv2/preprocessing/resampling/utils.py -> build/lib/nnunetv2/preprocessing/resampling
2023-03-27T16:19:51,436   creating build/lib/nnunetv2/preprocessing/cropping
2023-03-27T16:19:51,438   copying nnunetv2/preprocessing/cropping/cropping.py -> build/lib/nnunetv2/preprocessing/cropping
2023-03-27T16:19:51,440   copying nnunetv2/preprocessing/cropping/__init__.py -> build/lib/nnunetv2/preprocessing/cropping
2023-03-27T16:19:51,443   creating build/lib/nnunetv2/preprocessing/normalization
2023-03-27T16:19:51,444   copying nnunetv2/preprocessing/normalization/__init__.py -> build/lib/nnunetv2/preprocessing/normalization
2023-03-27T16:19:51,446   copying nnunetv2/preprocessing/normalization/default_normalization_schemes.py -> build/lib/nnunetv2/preprocessing/normalization
2023-03-27T16:19:51,449   copying nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py -> build/lib/nnunetv2/preprocessing/normalization
2023-03-27T16:19:51,452   creating build/lib/nnunetv2/preprocessing/preprocessors
2023-03-27T16:19:51,453   copying nnunetv2/preprocessing/preprocessors/default_preprocessor.py -> build/lib/nnunetv2/preprocessing/preprocessors
2023-03-27T16:19:51,456   copying nnunetv2/preprocessing/preprocessors/__init__.py -> build/lib/nnunetv2/preprocessing/preprocessors
2023-03-27T16:19:51,538   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2023-03-27T16:19:51,539     warnings.warn(
2023-03-27T16:19:51,581   installing to build/bdist.linux-armv7l/wheel
2023-03-27T16:19:51,582   running install
2023-03-27T16:19:51,609   running install_lib
2023-03-27T16:19:51,643   creating build/bdist.linux-armv7l
2023-03-27T16:19:51,644   creating build/bdist.linux-armv7l/wheel
2023-03-27T16:19:51,646   creating build/bdist.linux-armv7l/wheel/nnunetv2
2023-03-27T16:19:51,648   creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-27T16:19:51,649   copying build/lib/nnunetv2/utilities/default_n_proc_DA.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-27T16:19:51,651   copying build/lib/nnunetv2/utilities/get_network_from_plans.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-27T16:19:51,653   copying build/lib/nnunetv2/utilities/tensor_utilities.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-27T16:19:51,655   copying build/lib/nnunetv2/utilities/helpers.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-27T16:19:51,659   creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling
2023-03-27T16:19:51,660   copying build/lib/nnunetv2/utilities/label_handling/label_handling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling
2023-03-27T16:19:51,664   copying build/lib/nnunetv2/utilities/label_handling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling
2023-03-27T16:19:51,666   copying build/lib/nnunetv2/utilities/json_export.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-27T16:19:51,670   creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling
2023-03-27T16:19:51,671   copying build/lib/nnunetv2/utilities/plans_handling/plans_handler.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling
2023-03-27T16:19:51,674   copying build/lib/nnunetv2/utilities/plans_handling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling
2023-03-27T16:19:51,676   copying build/lib/nnunetv2/utilities/file_path_utilities.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-27T16:19:51,680   copying build/lib/nnunetv2/utilities/overlay_plots.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-27T16:19:51,683   copying build/lib/nnunetv2/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-27T16:19:51,685   copying build/lib/nnunetv2/utilities/dataset_name_id_conversion.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-27T16:19:51,687   copying build/lib/nnunetv2/utilities/ddp_allgather.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-27T16:19:51,690   copying build/lib/nnunetv2/utilities/network_initialization.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-27T16:19:51,692   copying build/lib/nnunetv2/utilities/find_class_by_name.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-27T16:19:51,695   copying build/lib/nnunetv2/utilities/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-27T16:19:51,697   copying build/lib/nnunetv2/utilities/collate_outputs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities
2023-03-27T16:19:51,700   copying build/lib/nnunetv2/configuration.py -> build/bdist.linux-armv7l/wheel/nnunetv2
2023-03-27T16:19:51,703   creating build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-27T16:19:51,704   copying build/lib/nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-27T16:19:51,707   copying build/lib/nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-27T16:19:51,709   copying build/lib/nnunetv2/dataset_conversion/Dataset137_BraTS21.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-27T16:19:51,712   copying build/lib/nnunetv2/dataset_conversion/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-27T16:19:51,714   copying build/lib/nnunetv2/dataset_conversion/generate_dataset_json.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-27T16:19:51,717   creating build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-27T16:19:51,718   copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-27T16:19:51,721   copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-27T16:19:51,725   copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-27T16:19:51,727   copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-27T16:19:51,729   copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests
2023-03-27T16:19:51,732   copying build/lib/nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-27T16:19:51,735   copying build/lib/nnunetv2/dataset_conversion/convert_MSD_dataset.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-27T16:19:51,738   copying build/lib/nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-27T16:19:51,741   copying build/lib/nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion
2023-03-27T16:19:51,744   creating build/bdist.linux-armv7l/wheel/nnunetv2/ensembling
2023-03-27T16:19:51,745   copying build/lib/nnunetv2/ensembling/ensemble.py -> build/bdist.linux-armv7l/wheel/nnunetv2/ensembling
2023-03-27T16:19:51,749   copying build/lib/nnunetv2/ensembling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/ensembling
2023-03-27T16:19:51,752   creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running
2023-03-27T16:19:51,753   copying build/lib/nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running
2023-03-27T16:19:51,755   copying build/lib/nnunetv2/batch_running/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running
2023-03-27T16:19:51,757   copying build/lib/nnunetv2/batch_running/collect_results_custom_Decathlon.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running
2023-03-27T16:19:51,761   creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings
2023-03-27T16:19:51,763   creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-27T16:19:51,764   copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-27T16:19:51,766   copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-27T16:19:51,769   copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1
2023-03-27T16:19:51,772   copying build/lib/nnunetv2/batch_running/release_trainings/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings
2023-03-27T16:19:51,776   creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking
2023-03-27T16:19:51,779   copying build/lib/nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking
2023-03-27T16:19:51,785   copying build/lib/nnunetv2/batch_running/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking
2023-03-27T16:19:51,790   copying build/lib/nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking
2023-03-27T16:19:51,792   copying build/lib/nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running
2023-03-27T16:19:51,795   creating build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing
2023-03-27T16:19:51,796   copying build/lib/nnunetv2/postprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing
2023-03-27T16:19:51,798   copying build/lib/nnunetv2/postprocessing/remove_connected_components.py -> build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing
2023-03-27T16:19:51,802   creating build/bdist.linux-armv7l/wheel/nnunetv2/tests
2023-03-27T16:19:51,803   copying build/lib/nnunetv2/tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests
2023-03-27T16:19:51,806   creating build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests
2023-03-27T16:19:51,807   copying build/lib/nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests
2023-03-27T16:19:51,809   copying build/lib/nnunetv2/tests/integration_tests/add_lowres_and_cascade.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests
2023-03-27T16:19:51,812   copying build/lib/nnunetv2/tests/integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests
2023-03-27T16:19:51,813   copying build/lib/nnunetv2/tests/integration_tests/cleanup_integration_test.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests
2023-03-27T16:19:51,816   creating build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2023-03-27T16:19:51,817   copying build/lib/nnunetv2/model_sharing/model_download.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2023-03-27T16:19:51,820   copying build/lib/nnunetv2/model_sharing/entry_points.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2023-03-27T16:19:51,822   copying build/lib/nnunetv2/model_sharing/model_export.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2023-03-27T16:19:51,825   copying build/lib/nnunetv2/model_sharing/model_import.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2023-03-27T16:19:51,827   copying build/lib/nnunetv2/model_sharing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing
2023-03-27T16:19:51,829   creating build/bdist.linux-armv7l/wheel/nnunetv2/inference
2023-03-27T16:19:51,830   copying build/lib/nnunetv2/inference/export_prediction.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference
2023-03-27T16:19:51,833   copying build/lib/nnunetv2/inference/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference
2023-03-27T16:19:51,835   copying build/lib/nnunetv2/inference/predict_from_raw_data.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference
2023-03-27T16:19:51,839   copying build/lib/nnunetv2/inference/sliding_window_prediction.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference
2023-03-27T16:19:51,842   creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning
2023-03-27T16:19:51,843   copying build/lib/nnunetv2/experiment_planning/plan_and_preprocess_api.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning
2023-03-27T16:19:51,846   copying build/lib/nnunetv2/experiment_planning/verify_dataset_integrity.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning
2023-03-27T16:19:51,850   creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners
2023-03-27T16:19:51,851   copying build/lib/nnunetv2/experiment_planning/experiment_planners/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners
2023-03-27T16:19:51,852   copying build/lib/nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners
2023-03-27T16:19:51,856   copying build/lib/nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners
2023-03-27T16:19:51,858   copying build/lib/nnunetv2/experiment_planning/experiment_planners/network_topology.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners
2023-03-27T16:19:51,860   copying build/lib/nnunetv2/experiment_planning/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning
2023-03-27T16:19:51,862   copying build/lib/nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning
2023-03-27T16:19:51,866   creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint
2023-03-27T16:19:51,867   copying build/lib/nnunetv2/experiment_planning/dataset_fingerprint/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint
2023-03-27T16:19:51,868   copying build/lib/nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint
2023-03-27T16:19:51,872   creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining
2023-03-27T16:19:51,873   copying build/lib/nnunetv2/experiment_planning/plans_for_pretraining/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining
2023-03-27T16:19:51,875   copying build/lib/nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining
2023-03-27T16:19:51,879   creating build/bdist.linux-armv7l/wheel/nnunetv2/evaluation
2023-03-27T16:19:51,881   copying build/lib/nnunetv2/evaluation/find_best_configuration.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation
2023-03-27T16:19:51,889   copying build/lib/nnunetv2/evaluation/evaluate_predictions.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation
2023-03-27T16:19:51,892   copying build/lib/nnunetv2/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation
2023-03-27T16:19:51,894   copying build/lib/nnunetv2/evaluation/accumulate_cv_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation
2023-03-27T16:19:51,897   creating build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-27T16:19:51,898   copying build/lib/nnunetv2/imageio/tif_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-27T16:19:51,900   copying build/lib/nnunetv2/imageio/base_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-27T16:19:51,903   copying build/lib/nnunetv2/imageio/nibabel_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-27T16:19:51,906   copying build/lib/nnunetv2/imageio/reader_writer_registry.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-27T16:19:51,908   copying build/lib/nnunetv2/imageio/simpleitk_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-27T16:19:51,911   copying build/lib/nnunetv2/imageio/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-27T16:19:51,913   copying build/lib/nnunetv2/imageio/natural_image_reager_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio
2023-03-27T16:19:51,915   copying build/lib/nnunetv2/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2
2023-03-27T16:19:51,917   copying build/lib/nnunetv2/paths.py -> build/bdist.linux-armv7l/wheel/nnunetv2
2023-03-27T16:19:51,919   creating build/bdist.linux-armv7l/wheel/nnunetv2/run
2023-03-27T16:19:51,921   copying build/lib/nnunetv2/run/run_training.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run
2023-03-27T16:19:51,923   copying build/lib/nnunetv2/run/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run
2023-03-27T16:19:51,925   copying build/lib/nnunetv2/run/load_pretrained_weights.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run
2023-03-27T16:19:51,929   creating build/bdist.linux-armv7l/wheel/nnunetv2/training
2023-03-27T16:19:51,930   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler
2023-03-27T16:19:51,931   copying build/lib/nnunetv2/training/lr_scheduler/polylr.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler
2023-03-27T16:19:51,934   copying build/lib/nnunetv2/training/lr_scheduler/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler
2023-03-27T16:19:51,936   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2023-03-27T16:19:51,937   copying build/lib/nnunetv2/training/loss/dice.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2023-03-27T16:19:51,940   copying build/lib/nnunetv2/training/loss/robust_ce_loss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2023-03-27T16:19:51,942   copying build/lib/nnunetv2/training/loss/compound_losses.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2023-03-27T16:19:51,945   copying build/lib/nnunetv2/training/loss/deep_supervision.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2023-03-27T16:19:51,947   copying build/lib/nnunetv2/training/loss/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss
2023-03-27T16:19:51,950   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2023-03-27T16:19:51,951   copying build/lib/nnunetv2/training/dataloading/nnunet_dataset.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2023-03-27T16:19:51,954   copying build/lib/nnunetv2/training/dataloading/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2023-03-27T16:19:51,955   copying build/lib/nnunetv2/training/dataloading/data_loader_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2023-03-27T16:19:51,958   copying build/lib/nnunetv2/training/dataloading/base_data_loader.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2023-03-27T16:19:51,961   copying build/lib/nnunetv2/training/dataloading/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2023-03-27T16:19:51,963   copying build/lib/nnunetv2/training/dataloading/data_loader_3d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading
2023-03-27T16:19:51,966   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/logging
2023-03-27T16:19:51,967   copying build/lib/nnunetv2/training/logging/nnunet_logger.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/logging
2023-03-27T16:19:51,971   copying build/lib/nnunetv2/training/logging/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/logging
2023-03-27T16:19:51,974   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer
2023-03-27T16:19:51,976   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants
2023-03-27T16:19:51,978   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling
2023-03-27T16:19:51,980   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling
2023-03-27T16:19:51,983   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling
2023-03-27T16:19:51,986   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length
2023-03-27T16:19:51,987   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length
2023-03-27T16:19:51,989   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length
2023-03-27T16:19:51,992   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length
2023-03-27T16:19:51,995   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-27T16:19:51,996   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-27T16:19:51,999   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-27T16:19:52,001   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-27T16:19:52,004   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss
2023-03-27T16:19:52,007   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-27T16:19:52,008   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-27T16:19:52,010   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-27T16:19:52,013   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture
2023-03-27T16:19:52,016   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2023-03-27T16:19:52,017   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2023-03-27T16:19:52,020   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule
2023-03-27T16:19:52,022   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants
2023-03-27T16:19:52,025   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-27T16:19:52,026   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-27T16:19:52,029   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-27T16:19:52,033   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-27T16:19:52,036   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-27T16:19:52,038   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation
2023-03-27T16:19:52,041   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-27T16:19:52,042   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-27T16:19:52,045   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-27T16:19:52,047   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking
2023-03-27T16:19:52,050   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-27T16:19:52,051   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-27T16:19:52,054   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-27T16:19:52,056   copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer
2023-03-27T16:19:52,058   copying build/lib/nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer
2023-03-27T16:19:52,063   copying build/lib/nnunetv2/training/nnUNetTrainer/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer
2023-03-27T16:19:52,065   copying build/lib/nnunetv2/training/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training
2023-03-27T16:19:52,069   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation
2023-03-27T16:19:52,070   copying build/lib/nnunetv2/training/data_augmentation/compute_initial_patch_size.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation
2023-03-27T16:19:52,073   copying build/lib/nnunetv2/training/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation
2023-03-27T16:19:52,076   creating build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:52,077   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:52,079   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/masking.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:52,082   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:52,086   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:52,090   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:52,097   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:52,101   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:52,103   copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms
2023-03-27T16:19:52,106   creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing
2023-03-27T16:19:52,107   creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling
2023-03-27T16:19:52,108   copying build/lib/nnunetv2/preprocessing/resampling/default_resampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling
2023-03-27T16:19:52,112   copying build/lib/nnunetv2/preprocessing/resampling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling
2023-03-27T16:19:52,113   copying build/lib/nnunetv2/preprocessing/resampling/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling
2023-03-27T16:19:52,116   creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping
2023-03-27T16:19:52,117   copying build/lib/nnunetv2/preprocessing/cropping/cropping.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping
2023-03-27T16:19:52,120   copying build/lib/nnunetv2/preprocessing/cropping/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping
2023-03-27T16:19:52,121   copying build/lib/nnunetv2/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing
2023-03-27T16:19:52,124   creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization
2023-03-27T16:19:52,125   copying build/lib/nnunetv2/preprocessing/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization
2023-03-27T16:19:52,127   copying build/lib/nnunetv2/preprocessing/normalization/default_normalization_schemes.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization
2023-03-27T16:19:52,129   copying build/lib/nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization
2023-03-27T16:19:52,132   creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors
2023-03-27T16:19:52,133   copying build/lib/nnunetv2/preprocessing/preprocessors/default_preprocessor.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors
2023-03-27T16:19:52,136   copying build/lib/nnunetv2/preprocessing/preprocessors/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors
2023-03-27T16:19:52,137   running install_egg_info
2023-03-27T16:19:52,225   running egg_info
2023-03-27T16:19:52,257   writing nnunetv2.egg-info/PKG-INFO
2023-03-27T16:19:52,259   writing dependency_links to nnunetv2.egg-info/dependency_links.txt
2023-03-27T16:19:52,262   writing entry points to nnunetv2.egg-info/entry_points.txt
2023-03-27T16:19:52,264   writing requirements to nnunetv2.egg-info/requires.txt
2023-03-27T16:19:52,266   writing top-level names to nnunetv2.egg-info/top_level.txt
2023-03-27T16:19:52,341   reading manifest file 'nnunetv2.egg-info/SOURCES.txt'
2023-03-27T16:19:52,347   adding license file 'LICENSE'
2023-03-27T16:19:52,358   writing manifest file 'nnunetv2.egg-info/SOURCES.txt'
2023-03-27T16:19:52,361   Copying nnunetv2.egg-info to build/bdist.linux-armv7l/wheel/nnunetv2-2.1-py3.9.egg-info
2023-03-27T16:19:52,377   running install_scripts
2023-03-27T16:19:52,413   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2023-03-27T16:19:52,419   creating build/bdist.linux-armv7l/wheel/nnunetv2-2.1.dist-info/WHEEL
2023-03-27T16:19:52,422   creating '/tmp/pip-wheel-zh3qmo03/nnunetv2-2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-03-27T16:19:52,425   adding 'nnunetv2/__init__.py'
2023-03-27T16:19:52,426   adding 'nnunetv2/configuration.py'
2023-03-27T16:19:52,428   adding 'nnunetv2/paths.py'
2023-03-27T16:19:52,430   adding 'nnunetv2/batch_running/__init__.py'
2023-03-27T16:19:52,432   adding 'nnunetv2/batch_running/collect_results_custom_Decathlon.py'
2023-03-27T16:19:52,433   adding 'nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py'
2023-03-27T16:19:52,435   adding 'nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py'
2023-03-27T16:19:52,437   adding 'nnunetv2/batch_running/benchmarking/__init__.py'
2023-03-27T16:19:52,439   adding 'nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py'
2023-03-27T16:19:52,440   adding 'nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py'
2023-03-27T16:19:52,442   adding 'nnunetv2/batch_running/release_trainings/__init__.py'
2023-03-27T16:19:52,444   adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py'
2023-03-27T16:19:52,446   adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py'
2023-03-27T16:19:52,448   adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py'
2023-03-27T16:19:52,450   adding 'nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py'
2023-03-27T16:19:52,452   adding 'nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py'
2023-03-27T16:19:52,453   adding 'nnunetv2/dataset_conversion/Dataset137_BraTS21.py'
2023-03-27T16:19:52,455   adding 'nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py'
2023-03-27T16:19:52,457   adding 'nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py'
2023-03-27T16:19:52,458   adding 'nnunetv2/dataset_conversion/__init__.py'
2023-03-27T16:19:52,460   adding 'nnunetv2/dataset_conversion/convert_MSD_dataset.py'
2023-03-27T16:19:52,462   adding 'nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py'
2023-03-27T16:19:52,464   adding 'nnunetv2/dataset_conversion/generate_dataset_json.py'
2023-03-27T16:19:52,466   adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py'
2023-03-27T16:19:52,468   adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py'
2023-03-27T16:19:52,469   adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py'
2023-03-27T16:19:52,471   adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py'
2023-03-27T16:19:52,472   adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py'
2023-03-27T16:19:52,474   adding 'nnunetv2/ensembling/__init__.py'
2023-03-27T16:19:52,476   adding 'nnunetv2/ensembling/ensemble.py'
2023-03-27T16:19:52,478   adding 'nnunetv2/evaluation/__init__.py'
2023-03-27T16:19:52,480   adding 'nnunetv2/evaluation/accumulate_cv_results.py'
2023-03-27T16:19:52,482   adding 'nnunetv2/evaluation/evaluate_predictions.py'
2023-03-27T16:19:52,485   adding 'nnunetv2/evaluation/find_best_configuration.py'
2023-03-27T16:19:52,487   adding 'nnunetv2/experiment_planning/__init__.py'
2023-03-27T16:19:52,489   adding 'nnunetv2/experiment_planning/plan_and_preprocess_api.py'
2023-03-27T16:19:52,492   adding 'nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py'
2023-03-27T16:19:52,495   adding 'nnunetv2/experiment_planning/verify_dataset_integrity.py'
2023-03-27T16:19:52,502   adding 'nnunetv2/experiment_planning/dataset_fingerprint/__init__.py'
2023-03-27T16:19:52,506   adding 'nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py'
2023-03-27T16:19:52,508   adding 'nnunetv2/experiment_planning/experiment_planners/__init__.py'
2023-03-27T16:19:52,512   adding 'nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py'
2023-03-27T16:19:52,514   adding 'nnunetv2/experiment_planning/experiment_planners/network_topology.py'
2023-03-27T16:19:52,515   adding 'nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py'
2023-03-27T16:19:52,518   adding 'nnunetv2/experiment_planning/plans_for_pretraining/__init__.py'
2023-03-27T16:19:52,519   adding 'nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py'
2023-03-27T16:19:52,521   adding 'nnunetv2/imageio/__init__.py'
2023-03-27T16:19:52,523   adding 'nnunetv2/imageio/base_reader_writer.py'
2023-03-27T16:19:52,525   adding 'nnunetv2/imageio/natural_image_reager_writer.py'
2023-03-27T16:19:52,527   adding 'nnunetv2/imageio/nibabel_reader_writer.py'
2023-03-27T16:19:52,529   adding 'nnunetv2/imageio/reader_writer_registry.py'
2023-03-27T16:19:52,531   adding 'nnunetv2/imageio/simpleitk_reader_writer.py'
2023-03-27T16:19:52,533   adding 'nnunetv2/imageio/tif_reader_writer.py'
2023-03-27T16:19:52,535   adding 'nnunetv2/inference/__init__.py'
2023-03-27T16:19:52,537   adding 'nnunetv2/inference/export_prediction.py'
2023-03-27T16:19:52,542   adding 'nnunetv2/inference/predict_from_raw_data.py'
2023-03-27T16:19:52,544   adding 'nnunetv2/inference/sliding_window_prediction.py'
2023-03-27T16:19:52,546   adding 'nnunetv2/model_sharing/__init__.py'
2023-03-27T16:19:52,548   adding 'nnunetv2/model_sharing/entry_points.py'
2023-03-27T16:19:52,549   adding 'nnunetv2/model_sharing/model_download.py'
2023-03-27T16:19:52,551   adding 'nnunetv2/model_sharing/model_export.py'
2023-03-27T16:19:52,553   adding 'nnunetv2/model_sharing/model_import.py'
2023-03-27T16:19:52,555   adding 'nnunetv2/postprocessing/__init__.py'
2023-03-27T16:19:52,557   adding 'nnunetv2/postprocessing/remove_connected_components.py'
2023-03-27T16:19:52,560   adding 'nnunetv2/preprocessing/__init__.py'
2023-03-27T16:19:52,561   adding 'nnunetv2/preprocessing/cropping/__init__.py'
2023-03-27T16:19:52,563   adding 'nnunetv2/preprocessing/cropping/cropping.py'
2023-03-27T16:19:52,565   adding 'nnunetv2/preprocessing/normalization/__init__.py'
2023-03-27T16:19:52,566   adding 'nnunetv2/preprocessing/normalization/default_normalization_schemes.py'
2023-03-27T16:19:52,568   adding 'nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py'
2023-03-27T16:19:52,570   adding 'nnunetv2/preprocessing/preprocessors/__init__.py'
2023-03-27T16:19:52,572   adding 'nnunetv2/preprocessing/preprocessors/default_preprocessor.py'
2023-03-27T16:19:52,575   adding 'nnunetv2/preprocessing/resampling/__init__.py'
2023-03-27T16:19:52,577   adding 'nnunetv2/preprocessing/resampling/default_resampling.py'
2023-03-27T16:19:52,579   adding 'nnunetv2/preprocessing/resampling/utils.py'
2023-03-27T16:19:52,581   adding 'nnunetv2/run/__init__.py'
2023-03-27T16:19:52,583   adding 'nnunetv2/run/load_pretrained_weights.py'
2023-03-27T16:19:52,586   adding 'nnunetv2/run/run_training.py'
2023-03-27T16:19:52,589   adding 'nnunetv2/tests/__init__.py'
2023-03-27T16:19:52,592   adding 'nnunetv2/tests/integration_tests/__init__.py'
2023-03-27T16:19:52,594   adding 'nnunetv2/tests/integration_tests/add_lowres_and_cascade.py'
2023-03-27T16:19:52,595   adding 'nnunetv2/tests/integration_tests/cleanup_integration_test.py'
2023-03-27T16:19:52,597   adding 'nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py'
2023-03-27T16:19:52,600   adding 'nnunetv2/training/__init__.py'
2023-03-27T16:19:52,602   adding 'nnunetv2/training/data_augmentation/__init__.py'
2023-03-27T16:19:52,603   adding 'nnunetv2/training/data_augmentation/compute_initial_patch_size.py'
2023-03-27T16:19:52,606   adding 'nnunetv2/training/data_augmentation/custom_transforms/__init__.py'
2023-03-27T16:19:52,608   adding 'nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py'
2023-03-27T16:19:52,610   adding 'nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py'
2023-03-27T16:19:52,611   adding 'nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py'
2023-03-27T16:19:52,613   adding 'nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py'
2023-03-27T16:19:52,615   adding 'nnunetv2/training/data_augmentation/custom_transforms/masking.py'
2023-03-27T16:19:52,616   adding 'nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py'
2023-03-27T16:19:52,618   adding 'nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py'
2023-03-27T16:19:52,620   adding 'nnunetv2/training/dataloading/__init__.py'
2023-03-27T16:19:52,623   adding 'nnunetv2/training/dataloading/base_data_loader.py'
2023-03-27T16:19:52,625   adding 'nnunetv2/training/dataloading/data_loader_2d.py'
2023-03-27T16:19:52,627   adding 'nnunetv2/training/dataloading/data_loader_3d.py'
2023-03-27T16:19:52,629   adding 'nnunetv2/training/dataloading/nnunet_dataset.py'
2023-03-27T16:19:52,631   adding 'nnunetv2/training/dataloading/utils.py'
2023-03-27T16:19:52,633   adding 'nnunetv2/training/logging/__init__.py'
2023-03-27T16:19:52,635   adding 'nnunetv2/training/logging/nnunet_logger.py'
2023-03-27T16:19:52,637   adding 'nnunetv2/training/loss/__init__.py'
2023-03-27T16:19:52,639   adding 'nnunetv2/training/loss/compound_losses.py'
2023-03-27T16:19:52,641   adding 'nnunetv2/training/loss/deep_supervision.py'
2023-03-27T16:19:52,643   adding 'nnunetv2/training/loss/dice.py'
2023-03-27T16:19:52,645   adding 'nnunetv2/training/loss/robust_ce_loss.py'
2023-03-27T16:19:52,647   adding 'nnunetv2/training/lr_scheduler/__init__.py'
2023-03-27T16:19:52,649   adding 'nnunetv2/training/lr_scheduler/polylr.py'
2023-03-27T16:19:52,651   adding 'nnunetv2/training/nnUNetTrainer/__init__.py'
2023-03-27T16:19:52,660   adding 'nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py'
2023-03-27T16:19:52,663   adding 'nnunetv2/training/nnUNetTrainer/variants/__init__.py'
2023-03-27T16:19:52,665   adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py'
2023-03-27T16:19:52,667   adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py'
2023-03-27T16:19:52,668   adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py'
2023-03-27T16:19:52,671   adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py'
2023-03-27T16:19:52,674   adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py'
2023-03-27T16:19:52,676   adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py'
2023-03-27T16:19:52,678   adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py'
2023-03-27T16:19:52,679   adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py'
2023-03-27T16:19:52,682   adding 'nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py'
2023-03-27T16:19:52,683   adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py'
2023-03-27T16:19:52,685   adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py'
2023-03-27T16:19:52,687   adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py'
2023-03-27T16:19:52,689   adding 'nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py'
2023-03-27T16:19:52,691   adding 'nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py'
2023-03-27T16:19:52,693   adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py'
2023-03-27T16:19:52,695   adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py'
2023-03-27T16:19:52,697   adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py'
2023-03-27T16:19:52,700   adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py'
2023-03-27T16:19:52,702   adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py'
2023-03-27T16:19:52,705   adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py'
2023-03-27T16:19:52,709   adding 'nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py'
2023-03-27T16:19:52,713   adding 'nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py'
2023-03-27T16:19:52,719   adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py'
2023-03-27T16:19:52,720   adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py'
2023-03-27T16:19:52,722   adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py'
2023-03-27T16:19:52,724   adding 'nnunetv2/utilities/__init__.py'
2023-03-27T16:19:52,725   adding 'nnunetv2/utilities/collate_outputs.py'
2023-03-27T16:19:52,727   adding 'nnunetv2/utilities/dataset_name_id_conversion.py'
2023-03-27T16:19:52,729   adding 'nnunetv2/utilities/ddp_allgather.py'
2023-03-27T16:19:52,730   adding 'nnunetv2/utilities/default_n_proc_DA.py'
2023-03-27T16:19:52,732   adding 'nnunetv2/utilities/file_path_utilities.py'
2023-03-27T16:19:52,734   adding 'nnunetv2/utilities/find_class_by_name.py'
2023-03-27T16:19:52,736   adding 'nnunetv2/utilities/get_network_from_plans.py'
2023-03-27T16:19:52,737   adding 'nnunetv2/utilities/helpers.py'
2023-03-27T16:19:52,739   adding 'nnunetv2/utilities/json_export.py'
2023-03-27T16:19:52,740   adding 'nnunetv2/utilities/network_initialization.py'
2023-03-27T16:19:52,742   adding 'nnunetv2/utilities/overlay_plots.py'
2023-03-27T16:19:52,744   adding 'nnunetv2/utilities/tensor_utilities.py'
2023-03-27T16:19:52,746   adding 'nnunetv2/utilities/utils.py'
2023-03-27T16:19:52,748   adding 'nnunetv2/utilities/label_handling/__init__.py'
2023-03-27T16:19:52,750   adding 'nnunetv2/utilities/label_handling/label_handling.py'
2023-03-27T16:19:52,752   adding 'nnunetv2/utilities/plans_handling/__init__.py'
2023-03-27T16:19:52,755   adding 'nnunetv2/utilities/plans_handling/plans_handler.py'
2023-03-27T16:19:52,759   adding 'nnunetv2-2.1.dist-info/LICENSE'
2023-03-27T16:19:52,760   adding 'nnunetv2-2.1.dist-info/METADATA'
2023-03-27T16:19:52,761   adding 'nnunetv2-2.1.dist-info/WHEEL'
2023-03-27T16:19:52,763   adding 'nnunetv2-2.1.dist-info/entry_points.txt'
2023-03-27T16:19:52,764   adding 'nnunetv2-2.1.dist-info/top_level.txt'
2023-03-27T16:19:52,767   adding 'nnunetv2-2.1.dist-info/RECORD'
2023-03-27T16:19:52,773   removing build/bdist.linux-armv7l/wheel
2023-03-27T16:19:52,952   Building wheel for nnunetv2 (setup.py): finished with status 'done'
2023-03-27T16:19:52,959   Created wheel for nnunetv2: filename=nnunetv2-2.1-py3-none-any.whl size=212128 sha256=1aaa6b18e813f011d50ac92dd2b1a35512438d54a3dd7d63dc8dee150c5ab3ee
2023-03-27T16:19:52,960   Stored in directory: /tmp/pip-ephem-wheel-cache-0ldy8d5j/wheels/81/42/1f/1a1c1e798e27ffc0b036ec9b0eb483516fca66706024151595
2023-03-27T16:19:52,984 Successfully built nnunetv2
2023-03-27T16:19:52,998 Removed build tracker: '/tmp/pip-build-tracker-8_7owa1w'