2023-03-28T16:43:13,979 Created temporary directory: /tmp/pip-ephem-wheel-cache-mtr86i0k
2023-03-28T16:43:13,982 Created temporary directory: /tmp/pip-build-tracker-nmvymh20
2023-03-28T16:43:13,983 Initialized build tracking at /tmp/pip-build-tracker-nmvymh20
2023-03-28T16:43:13,983 Created build tracker: /tmp/pip-build-tracker-nmvymh20
2023-03-28T16:43:13,983 Entered build tracker: /tmp/pip-build-tracker-nmvymh20
2023-03-28T16:43:13,984 Created temporary directory: /tmp/pip-wheel-rtjbrjss
2023-03-28T16:43:13,989 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-28T16:43:13,993 Created temporary directory: /tmp/pip-ephem-wheel-cache-pmjoj51u
2023-03-28T16:43:14,030 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-28T16:43:14,034 2 location(s) to search for versions of hydride:
2023-03-28T16:43:14,034 * https://pypi.org/simple/hydride/
2023-03-28T16:43:14,034 * https://www.piwheels.org/simple/hydride/
2023-03-28T16:43:14,035 Fetching project page and analyzing links: https://pypi.org/simple/hydride/
2023-03-28T16:43:14,036 Getting page https://pypi.org/simple/hydride/
2023-03-28T16:43:14,038 Found index url https://pypi.org/simple
2023-03-28T16:43:14,102 Fetched page https://pypi.org/simple/hydride/ as application/vnd.pypi.simple.v1+json
2023-03-28T16:43:14,118   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/c1/ca/10e337628717f218cd81d4978284023a49507206b884407939c9ac8259be/hydride-0.1.0-py3-none-any.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7,<4.0)
2023-03-28T16:43:14,119   Found link https://files.pythonhosted.org/packages/1c/b4/d17a34568a8a3f21e6f237ea45dadb2a13a2a0f03465e4de752caf1b47aa/hydride-0.1.0.tar.gz (from https://pypi.org/simple/hydride/) (requires-python:>=3.7,<4.0), version: 0.1.0
2023-03-28T16:43:14,119   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/82/4b/f96e324dcf4705ec39bb8153fa954a8fc8658a38767c70e4f26cbc1c4981/hydride-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,120   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7d/1c/0a440a3a51e68d876c31d4cdf6429cea8af9d0438bbff432f90973027dac/hydride-1.0.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,120   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/e9/ec/b654ae4347b4372e5a4c00c330b4d8304bcf7307f34d1d2ace0489ca0bab/hydride-1.0.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,120   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/e9/58/0ee938ed1abca37c48533d7af0a22aef36c7a2a64cfacdd27b64d4473640/hydride-1.0.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,120   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/09/47/7c84f8e6b282e2cb4959134620da86b8d1a63ca4a90fe10fed6f3606748e/hydride-1.0.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,121   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/6b/94/41346ab7c36be1821b5e4b27cca8047863feaca12f5f324dc09ecd2f0c2f/hydride-1.0.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,121   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/af/50/8fa7c180fbabc1406f5fd3e052f19c0b8f17fd4946b8e60275ffb3f288fa/hydride-1.0.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,121   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/37/af/35a3c5099559d3d84497bd52e0a45e8679b0bf7e25ebe8cc5cbfc2d8c312/hydride-1.0.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,121   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/bc/d2/2b55d85ca01ea592babee40f1fa2ee787a9f467670f996f8f7476c648549/hydride-1.0.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,122   Found link https://files.pythonhosted.org/packages/00/a4/7b8ca110619fb5c74c555b91223bdfe38c0551c944e6291f8ad3c7bd3ca4/hydride-1.0.0.tar.gz (from https://pypi.org/simple/hydride/) (requires-python:>=3.7), version: 1.0.0
2023-03-28T16:43:14,122   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/69/fc/910197f4448fc4c20cf65d66d9fc0c51463eaa0c06e9838fb9c7fbe60e64/hydride-1.1.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,123   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/fe/00/74759e1c2099cb462fb1cfc2b5a4b5131bee9fc172e097e80b6fcae489e8/hydride-1.1.0-cp310-cp310-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,123   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/41/4b/8a5e4f990ac3a3ff08218f1263dc1bc45dc21aea2d5ffa5f8943c7c4913f/hydride-1.1.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,123   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/a3/f5/17329c029a5d9a9bac612eb84bd1c32734ad52bbce292427369a4ed1a372/hydride-1.1.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,123   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/00/f8/7145de2d08c70588187ddada8a7f1c6bd696a9247973833086651ca6e7b7/hydride-1.1.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,124   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/79/d6/a851b2cec64641a62b94fdb5a02ed715171c098f061e36472f5df66f0c32/hydride-1.1.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,124   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7e/01/b4ca501199235069110ae8f913122b434422d5ca5e9f72215b48ecf9cf68/hydride-1.1.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,124   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/ed/e5/849f9e8f6aa1dc7b3432388fdd5d2f21be64d4a813399b9862e2b6f5d041/hydride-1.1.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,124   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/3b/1e/e691328a2b40c1d6894146542020bc074d488f334c103e3091ae33fa49f2/hydride-1.1.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,125   Found link https://files.pythonhosted.org/packages/2d/1d/70b2507223bd0d8986068236beb1ad0178e405c51de8718499e4e671cb15/hydride-1.1.0.tar.gz (from https://pypi.org/simple/hydride/) (requires-python:>=3.7), version: 1.1.0
2023-03-28T16:43:14,125   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/de/b1/10fa73f14fc62eec90bbb95931a46acbcf8674580656cf34339358b7d431/hydride-1.1.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,126   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/08/08/877ad64acaf60950a41280b5d819d41b063a705042bff71dde4be6e5f82e/hydride-1.1.1-cp310-cp310-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,126   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/9f/14/96b1caf87f260ea00db658e83e6ae6d09e8bc096a2003b721e1384ffd11f/hydride-1.1.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,126   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/6f/b3/d7184f2ffdaf8ed63488163c663bc6f3d99120a01250ed6812e41cd4df7b/hydride-1.1.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,126   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/12/0d/fdd485a72d0301e40728ed1e8030562e517c5e69c3cf38828326eae5ed81/hydride-1.1.1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,127   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/89/11/daede9543ed710ebc5c163105c68c68355df12c8c2d1942bc8ea50e92e89/hydride-1.1.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,127   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/4a/a5/eb07e8887485bea6c290a27ccaf64ca72bf9da79664408247ec379585cc8/hydride-1.1.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,127   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/c1/6d/61aa50a96943b6503e4a7e323bc2b40bb0e5a6c2b98eb0b7f55eb419dce4/hydride-1.1.1-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,127   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/3b/2e/293d03ff36d5eae2699be25d899a61d7f0525bfcc1de4d2d2948477c2fbf/hydride-1.1.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,128   Found link https://files.pythonhosted.org/packages/6a/ed/a63ee98669907ef3316d4a39084b2274ebb52ea741fd26d408e1cd5adc08/hydride-1.1.1.tar.gz (from https://pypi.org/simple/hydride/) (requires-python:>=3.7), version: 1.1.1
2023-03-28T16:43:14,128   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/4d/d0/eeee127d8a47cd6842b3099e9365a292cd6a2ae8e4b4565a86fdc75becdb/hydride-1.1.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,128   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/65/db/b1cfba194c916ba99fd4a7bdf121098f153ad20dec27cf2c8a2b059f52f3/hydride-1.1.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,129   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/a5/a7/758a1d59672bf7c5c301bc89b911cb2f357ed106acbb8723600936ccaeb9/hydride-1.1.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,129   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7e/7d/9c81f27b1183d661af993374bddfc4e14ed64f9be2eb93e808f4f0c7757b/hydride-1.1.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,129   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7c/20/40ae9f6a99f434cd5c5db423f220fca2c8e9919fb455347107e7eea36190/hydride-1.1.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,129   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/cb/94/6f86716d642354efc1b5b51240d8a7aaf99069fd577357bf1121455ff253/hydride-1.1.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,130   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/42/ec/bc8674ec225e394f9d16a37dff943250ac76082139d8932322c06912f2df/hydride-1.1.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,130   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7a/53/5f35976f533b8b42c5d2e85f99c7abe111973f7007d8192a0706717abcff/hydride-1.1.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,130   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/6f/cd/ad58bdaf7a8e57a44e9c247ade9eab88d631a24c567a9292674919a1d987/hydride-1.1.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,130   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/e3/54/ef7eacaa7c262f0fb8708b6bbb32e0f0596d03fff195baa3a7a0ac9e5f37/hydride-1.1.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,131   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/f0/f8/3cf99968ad47183c0a8f31bc3ecf4e261de35414b338698f90aeb1aaa205/hydride-1.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,131   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/60/06/de67650274107f2523eed6771f112dd6ac5c589f8f46ccddb60a7416ec59/hydride-1.1.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,131   Found link https://files.pythonhosted.org/packages/7d/6a/1629fd07665ab8bff04e6f9c9031d63a555792cbef6a74ba6ff477d3d6ba/hydride-1.1.2.tar.gz (from https://pypi.org/simple/hydride/) (requires-python:>=3.7), version: 1.1.2
2023-03-28T16:43:14,132 Fetching project page and analyzing links: https://www.piwheels.org/simple/hydride/
2023-03-28T16:43:14,132 Getting page https://www.piwheels.org/simple/hydride/
2023-03-28T16:43:14,133 Found index url https://www.piwheels.org/simple
2023-03-28T16:43:14,303 Fetched page https://www.piwheels.org/simple/hydride/ as text/html
2023-03-28T16:43:14,305   Skipping link: No binaries permitted for hydride: https://www.piwheels.org/simple/hydride/hydride-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=40da0a39d4755dda084ca337ffdcf3f5444bbc4c5b64a5c2c8f266999a05aa4a (from https://www.piwheels.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,306   Skipping link: No binaries permitted for hydride: https://www.piwheels.org/simple/hydride/hydride-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=40da0a39d4755dda084ca337ffdcf3f5444bbc4c5b64a5c2c8f266999a05aa4a (from https://www.piwheels.org/simple/hydride/) (requires-python:>=3.7)
2023-03-28T16:43:14,306   Skipping link: No binaries permitted for hydride: https://www.piwheels.org/simple/hydride/hydride-0.1.0-py3-none-any.whl#sha256=a456732a6cf18307244549dabc3384559c6861beb4d3be3dbb2ec64b71d3be19 (from https://www.piwheels.org/simple/hydride/) (requires-python:>=3.7,<4.0)
2023-03-28T16:43:14,306 Skipping link: not a file: https://www.piwheels.org/simple/hydride/
2023-03-28T16:43:14,306 Skipping link: not a file: https://pypi.org/simple/hydride/
2023-03-28T16:43:14,330 Given no hashes to check 1 links for project 'hydride': discarding no candidates
2023-03-28T16:43:14,350 Collecting hydride==1.1.2
2023-03-28T16:43:14,352   Created temporary directory: /tmp/pip-unpack-4fa0zcf_
2023-03-28T16:43:14,401   Downloading hydride-1.1.2.tar.gz (248 kB)
2023-03-28T16:43:14,612   Added hydride==1.1.2 from https://files.pythonhosted.org/packages/7d/6a/1629fd07665ab8bff04e6f9c9031d63a555792cbef6a74ba6ff477d3d6ba/hydride-1.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-nmvymh20'
2023-03-28T16:43:14,624   Created temporary directory: /tmp/pip-build-env-elhe3frs
2023-03-28T16:43:14,636   Installing build dependencies: started
2023-03-28T16:43:14,637   Running command pip subprocess to install build dependencies
2023-03-28T16:43:16,118   Using pip 23.0.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2023-03-28T16:43:16,892   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-28T16:43:16,922   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-28T16:43:18,971   Collecting setuptools>=0.30
2023-03-28T16:43:19,105     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.6.1-py3-none-any.whl (1.1 MB)
2023-03-28T16:43:19,428   Collecting wheel>=0.30
2023-03-28T16:43:19,449     Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB)
2023-03-28T16:43:19,860   Collecting biotite>=0.35
2023-03-28T16:43:19,930     Downloading https://www.piwheels.org/simple/biotite/biotite-0.36.1-cp39-cp39-linux_armv7l.whl (45.2 MB)
2023-03-28T16:43:24,609        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.2/45.2 MB 4.6 MB/s eta 0:00:00
2023-03-28T16:43:26,027   Collecting oldest-supported-numpy
2023-03-28T16:43:26,053     Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2022.11.19-py3-none-any.whl (4.9 kB)
2023-03-28T16:43:26,480   Collecting msgpack>=0.5.6
2023-03-28T16:43:26,523     Using cached https://www.piwheels.org/simple/msgpack/msgpack-1.0.5-cp39-cp39-linux_armv7l.whl (282 kB)
2023-03-28T16:43:28,093   Collecting cython>=0.29
2023-03-28T16:43:28,753     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.33-cp39-cp39-linux_armv7l.whl (5.0 MB)
2023-03-28T16:43:29,332   Collecting requests>=2.12
2023-03-28T16:43:29,353     Using cached https://www.piwheels.org/simple/requests/requests-2.28.2-py3-none-any.whl (62 kB)
2023-03-28T16:43:30,768   Collecting numpy>=1.14.5
2023-03-28T16:43:32,079     Using cached https://www.piwheels.org/simple/numpy/numpy-1.24.2-cp39-cp39-linux_armv7l.whl (12.3 MB)
2023-03-28T16:43:32,899   Collecting networkx>=2.0
2023-03-28T16:43:33,152     Using cached https://www.piwheels.org/simple/networkx/networkx-3.0-py3-none-any.whl (2.0 MB)
2023-03-28T16:43:33,453   Collecting numpy>=1.14.5
2023-03-28T16:43:35,162     Using cached https://www.piwheels.org/simple/numpy/numpy-1.19.3-cp39-cp39-linux_armv7l.whl (10.5 MB)
2023-03-28T16:43:35,772   Collecting idna<4,>=2.5
2023-03-28T16:43:35,837     Using cached https://www.piwheels.org/simple/idna/idna-3.4-py3-none-any.whl (61 kB)
2023-03-28T16:43:36,060   Collecting certifi>=2017.4.17
2023-03-28T16:43:36,086     Using cached https://www.piwheels.org/simple/certifi/certifi-2022.12.7-py3-none-any.whl (155 kB)
2023-03-28T16:43:36,513   Collecting charset-normalizer<4,>=2
2023-03-28T16:43:36,542     Using cached charset_normalizer-3.1.0-py3-none-any.whl (46 kB)
2023-03-28T16:43:36,904   Collecting urllib3<1.27,>=1.21.1
2023-03-28T16:43:36,927     Using cached https://www.piwheels.org/simple/urllib3/urllib3-1.26.15-py2.py3-none-any.whl (140 kB)
2023-03-28T16:43:40,085   Installing collected packages: msgpack, wheel, urllib3, setuptools, numpy, networkx, idna, cython, charset-normalizer, certifi, requests, oldest-supported-numpy, biotite
2023-03-28T16:43:40,483     Creating /tmp/pip-build-env-elhe3frs/overlay/bin
2023-03-28T16:43:40,488     changing mode of /tmp/pip-build-env-elhe3frs/overlay/bin/wheel to 755
2023-03-28T16:43:51,283     changing mode of /tmp/pip-build-env-elhe3frs/overlay/bin/f2py to 755
2023-03-28T16:43:51,286     changing mode of /tmp/pip-build-env-elhe3frs/overlay/bin/f2py3 to 755
2023-03-28T16:43:51,288     changing mode of /tmp/pip-build-env-elhe3frs/overlay/bin/f2py3.9 to 755
2023-03-28T16:44:01,513     changing mode of /tmp/pip-build-env-elhe3frs/overlay/bin/cygdb to 755
2023-03-28T16:44:01,516     changing mode of /tmp/pip-build-env-elhe3frs/overlay/bin/cython to 755
2023-03-28T16:44:01,519     changing mode of /tmp/pip-build-env-elhe3frs/overlay/bin/cythonize to 755
2023-03-28T16:44:01,692     changing mode of /tmp/pip-build-env-elhe3frs/overlay/bin/normalizer to 755
2023-03-28T16:44:09,102   Successfully installed biotite-0.36.1 certifi-2022.12.7 charset-normalizer-3.1.0 cython-0.29.33 idna-3.4 msgpack-1.0.5 networkx-3.0 numpy-1.19.3 oldest-supported-numpy-2022.11.19 requests-2.28.2 setuptools-67.6.1 urllib3-1.26.15 wheel-0.40.0
2023-03-28T16:44:09,941   Installing build dependencies: finished with status 'done'
2023-03-28T16:44:09,962   Getting requirements to build wheel: started
2023-03-28T16:44:09,964   Running command Getting requirements to build wheel
2023-03-28T16:44:13,203   running egg_info
2023-03-28T16:44:13,212   writing src/hydride.egg-info/PKG-INFO
2023-03-28T16:44:13,215   writing dependency_links to src/hydride.egg-info/dependency_links.txt
2023-03-28T16:44:13,218   writing entry points to src/hydride.egg-info/entry_points.txt
2023-03-28T16:44:13,220   writing requirements to src/hydride.egg-info/requires.txt
2023-03-28T16:44:13,224   writing top-level names to src/hydride.egg-info/top_level.txt
2023-03-28T16:44:13,266   reading manifest file 'src/hydride.egg-info/SOURCES.txt'
2023-03-28T16:44:13,268   reading manifest template 'MANIFEST.in'
2023-03-28T16:44:13,269   adding license file 'LICENSE.rst'
2023-03-28T16:44:13,273   writing manifest file 'src/hydride.egg-info/SOURCES.txt'
2023-03-28T16:44:13,545   Getting requirements to build wheel: finished with status 'done'
2023-03-28T16:44:13,563   Created temporary directory: /tmp/pip-modern-metadata-ix1dl372
2023-03-28T16:44:13,566   Preparing metadata (pyproject.toml): started
2023-03-28T16:44:13,567   Running command Preparing metadata (pyproject.toml)
2023-03-28T16:44:16,422   running dist_info
2023-03-28T16:44:16,432   creating /tmp/pip-modern-metadata-ix1dl372/hydride.egg-info
2023-03-28T16:44:16,441   writing /tmp/pip-modern-metadata-ix1dl372/hydride.egg-info/PKG-INFO
2023-03-28T16:44:16,445   writing dependency_links to /tmp/pip-modern-metadata-ix1dl372/hydride.egg-info/dependency_links.txt
2023-03-28T16:44:16,447   writing entry points to /tmp/pip-modern-metadata-ix1dl372/hydride.egg-info/entry_points.txt
2023-03-28T16:44:16,449   writing requirements to /tmp/pip-modern-metadata-ix1dl372/hydride.egg-info/requires.txt
2023-03-28T16:44:16,451   writing top-level names to /tmp/pip-modern-metadata-ix1dl372/hydride.egg-info/top_level.txt
2023-03-28T16:44:16,452   writing manifest file '/tmp/pip-modern-metadata-ix1dl372/hydride.egg-info/SOURCES.txt'
2023-03-28T16:44:16,492   reading manifest file '/tmp/pip-modern-metadata-ix1dl372/hydride.egg-info/SOURCES.txt'
2023-03-28T16:44:16,495   reading manifest template 'MANIFEST.in'
2023-03-28T16:44:16,497   adding license file 'LICENSE.rst'
2023-03-28T16:44:16,500   writing manifest file '/tmp/pip-modern-metadata-ix1dl372/hydride.egg-info/SOURCES.txt'
2023-03-28T16:44:16,502   creating '/tmp/pip-modern-metadata-ix1dl372/hydride-1.1.2.dist-info'
2023-03-28T16:44:16,827   Preparing metadata (pyproject.toml): finished with status 'done'
2023-03-28T16:44:16,835   Source in /tmp/pip-wheel-rtjbrjss/hydride_2a560fa90fe14ba0ab601d1f0317a5b8 has version 1.1.2, which satisfies requirement hydride==1.1.2 from https://files.pythonhosted.org/packages/7d/6a/1629fd07665ab8bff04e6f9c9031d63a555792cbef6a74ba6ff477d3d6ba/hydride-1.1.2.tar.gz
2023-03-28T16:44:16,836   Removed hydride==1.1.2 from https://files.pythonhosted.org/packages/7d/6a/1629fd07665ab8bff04e6f9c9031d63a555792cbef6a74ba6ff477d3d6ba/hydride-1.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-nmvymh20'
2023-03-28T16:44:16,843 Created temporary directory: /tmp/pip-unpack-9bog7_qp
2023-03-28T16:44:16,844 Building wheels for collected packages: hydride
2023-03-28T16:44:16,850   Created temporary directory: /tmp/pip-wheel-xiv4wqt4
2023-03-28T16:44:16,850   Destination directory: /tmp/pip-wheel-xiv4wqt4
2023-03-28T16:44:16,854   Building wheel for hydride (pyproject.toml): started
2023-03-28T16:44:16,856   Running command Building wheel for hydride (pyproject.toml)
2023-03-28T16:44:19,629   running bdist_wheel
2023-03-28T16:44:19,662   running build
2023-03-28T16:44:19,663   running build_py
2023-03-28T16:44:19,674   creating build
2023-03-28T16:44:19,674   creating build/lib.linux-armv7l-cpython-39
2023-03-28T16:44:19,675   creating build/lib.linux-armv7l-cpython-39/hydride
2023-03-28T16:44:19,677   copying src/hydride/charge.py -> build/lib.linux-armv7l-cpython-39/hydride
2023-03-28T16:44:19,680   copying src/hydride/add.py -> build/lib.linux-armv7l-cpython-39/hydride
2023-03-28T16:44:19,683   copying src/hydride/names.py -> build/lib.linux-armv7l-cpython-39/hydride
2023-03-28T16:44:19,686   copying src/hydride/fragments.py -> build/lib.linux-armv7l-cpython-39/hydride
2023-03-28T16:44:19,689   copying src/hydride/__init__.py -> build/lib.linux-armv7l-cpython-39/hydride
2023-03-28T16:44:19,691   copying src/hydride/cli.py -> build/lib.linux-armv7l-cpython-39/hydride
2023-03-28T16:44:19,694   running egg_info
2023-03-28T16:44:19,713   writing src/hydride.egg-info/PKG-INFO
2023-03-28T16:44:19,716   writing dependency_links to src/hydride.egg-info/dependency_links.txt
2023-03-28T16:44:19,719   writing entry points to src/hydride.egg-info/entry_points.txt
2023-03-28T16:44:19,721   writing requirements to src/hydride.egg-info/requires.txt
2023-03-28T16:44:19,722   writing top-level names to src/hydride.egg-info/top_level.txt
2023-03-28T16:44:19,739   reading manifest file 'src/hydride.egg-info/SOURCES.txt'
2023-03-28T16:44:19,742   reading manifest template 'MANIFEST.in'
2023-03-28T16:44:19,743   adding license file 'LICENSE.rst'
2023-03-28T16:44:19,747   writing manifest file 'src/hydride.egg-info/SOURCES.txt'
2023-03-28T16:44:19,751   copying src/hydride/fragments.pickle -> build/lib.linux-armv7l-cpython-39/hydride
2023-03-28T16:44:19,760   copying src/hydride/names.pickle -> build/lib.linux-armv7l-cpython-39/hydride
2023-03-28T16:44:19,765   copying src/hydride/relax.c -> build/lib.linux-armv7l-cpython-39/hydride
2023-03-28T16:44:19,814   running build_ext
2023-03-28T16:44:19,820   building 'hydride.relax' extension
2023-03-28T16:44:19,820   creating build/temp.linux-armv7l-cpython-39
2023-03-28T16:44:19,821   creating build/temp.linux-armv7l-cpython-39/src
2023-03-28T16:44:19,822   creating build/temp.linux-armv7l-cpython-39/src/hydride
2023-03-28T16:44:19,823   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-elhe3frs/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/hydride/relax.c -o build/temp.linux-armv7l-cpython-39/src/hydride/relax.o
2023-03-28T16:44:20,280   In file included from /tmp/pip-build-env-elhe3frs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2023-03-28T16:44:20,280                    from /tmp/pip-build-env-elhe3frs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-03-28T16:44:20,280                    from /tmp/pip-build-env-elhe3frs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2023-03-28T16:44:20,280                    from src/hydride/relax.c:760:
2023-03-28T16:44:20,280   /tmp/pip-build-env-elhe3frs/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-03-28T16:44:20,281      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-03-28T16:44:20,281         |  ^~~~~~~
2023-03-28T16:45:02,694   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/hydride/relax.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/hydride/relax.cpython-39-arm-linux-gnueabihf.so
2023-03-28T16:45:02,983   installing to build/bdist.linux-armv7l/wheel
2023-03-28T16:45:02,984   running install
2023-03-28T16:45:03,016   running install_lib
2023-03-28T16:45:03,027   creating build/bdist.linux-armv7l
2023-03-28T16:45:03,028   creating build/bdist.linux-armv7l/wheel
2023-03-28T16:45:03,031   creating build/bdist.linux-armv7l/wheel/hydride
2023-03-28T16:45:03,033   copying build/lib.linux-armv7l-cpython-39/hydride/charge.py -> build/bdist.linux-armv7l/wheel/hydride
2023-03-28T16:45:03,037   copying build/lib.linux-armv7l-cpython-39/hydride/relax.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/hydride
2023-03-28T16:45:03,099   copying build/lib.linux-armv7l-cpython-39/hydride/add.py -> build/bdist.linux-armv7l/wheel/hydride
2023-03-28T16:45:03,102   copying build/lib.linux-armv7l-cpython-39/hydride/names.pickle -> build/bdist.linux-armv7l/wheel/hydride
2023-03-28T16:45:03,107   copying build/lib.linux-armv7l-cpython-39/hydride/names.py -> build/bdist.linux-armv7l/wheel/hydride
2023-03-28T16:45:03,110   copying build/lib.linux-armv7l-cpython-39/hydride/relax.c -> build/bdist.linux-armv7l/wheel/hydride
2023-03-28T16:45:03,155   copying build/lib.linux-armv7l-cpython-39/hydride/fragments.py -> build/bdist.linux-armv7l/wheel/hydride
2023-03-28T16:45:03,158   copying build/lib.linux-armv7l-cpython-39/hydride/__init__.py -> build/bdist.linux-armv7l/wheel/hydride
2023-03-28T16:45:03,160   copying build/lib.linux-armv7l-cpython-39/hydride/cli.py -> build/bdist.linux-armv7l/wheel/hydride
2023-03-28T16:45:03,163   copying build/lib.linux-armv7l-cpython-39/hydride/fragments.pickle -> build/bdist.linux-armv7l/wheel/hydride
2023-03-28T16:45:03,173   running install_egg_info
2023-03-28T16:45:03,181   Copying src/hydride.egg-info to build/bdist.linux-armv7l/wheel/hydride-1.1.2-py3.9.egg-info
2023-03-28T16:45:03,198   running install_scripts
2023-03-28T16:45:03,262   creating build/bdist.linux-armv7l/wheel/hydride-1.1.2.dist-info/WHEEL
2023-03-28T16:45:03,265   creating '/tmp/pip-wheel-xiv4wqt4/.tmp-xvz009u3/hydride-1.1.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-03-28T16:45:03,268   adding 'hydride/__init__.py'
2023-03-28T16:45:03,270   adding 'hydride/add.py'
2023-03-28T16:45:03,272   adding 'hydride/charge.py'
2023-03-28T16:45:03,275   adding 'hydride/cli.py'
2023-03-28T16:45:03,289   adding 'hydride/fragments.pickle'
2023-03-28T16:45:03,293   adding 'hydride/fragments.py'
2023-03-28T16:45:03,296   adding 'hydride/names.pickle'
2023-03-28T16:45:03,299   adding 'hydride/names.py'
2023-03-28T16:45:03,423   adding 'hydride/relax.c'
2023-03-28T16:45:03,809   adding 'hydride/relax.cpython-39-arm-linux-gnueabihf.so'
2023-03-28T16:45:03,825   adding 'hydride-1.1.2.dist-info/LICENSE.rst'
2023-03-28T16:45:03,827   adding 'hydride-1.1.2.dist-info/METADATA'
2023-03-28T16:45:03,828   adding 'hydride-1.1.2.dist-info/WHEEL'
2023-03-28T16:45:03,829   adding 'hydride-1.1.2.dist-info/entry_points.txt'
2023-03-28T16:45:03,830   adding 'hydride-1.1.2.dist-info/top_level.txt'
2023-03-28T16:45:03,831   adding 'hydride-1.1.2.dist-info/RECORD'
2023-03-28T16:45:03,853   removing build/bdist.linux-armv7l/wheel
2023-03-28T16:45:04,160   Building wheel for hydride (pyproject.toml): finished with status 'done'
2023-03-28T16:45:04,204   Created wheel for hydride: filename=hydride-1.1.2-cp39-cp39-linux_armv7l.whl size=902867 sha256=1ce3f7726c994696bc76e32871af167117cbbcb7f490b9eb6613f9ece249b13a
2023-03-28T16:45:04,206   Stored in directory: /tmp/pip-ephem-wheel-cache-pmjoj51u/wheels/02/ea/a2/1fe5ef48bbc6770689295bc6d62aac98149f023225218d0e80
2023-03-28T16:45:04,220 Successfully built hydride
2023-03-28T16:45:04,258 Removed build tracker: '/tmp/pip-build-tracker-nmvymh20'