2023-03-28T20:14:13,427 Created temporary directory: /tmp/pip-ephem-wheel-cache-5338zpp0
2023-03-28T20:14:13,433 Created temporary directory: /tmp/pip-build-tracker-eci5kz_s
2023-03-28T20:14:13,434 Initialized build tracking at /tmp/pip-build-tracker-eci5kz_s
2023-03-28T20:14:13,434 Created build tracker: /tmp/pip-build-tracker-eci5kz_s
2023-03-28T20:14:13,434 Entered build tracker: /tmp/pip-build-tracker-eci5kz_s
2023-03-28T20:14:13,436 Created temporary directory: /tmp/pip-wheel-00x955ay
2023-03-28T20:14:13,445 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-28T20:14:13,452 Created temporary directory: /tmp/pip-ephem-wheel-cache-p8y59zlp
2023-03-28T20:14:13,506 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-28T20:14:13,513 2 location(s) to search for versions of bionetgen:
2023-03-28T20:14:13,513 * https://pypi.org/simple/bionetgen/
2023-03-28T20:14:13,513 * https://www.piwheels.org/simple/bionetgen/
2023-03-28T20:14:13,514 Fetching project page and analyzing links: https://pypi.org/simple/bionetgen/
2023-03-28T20:14:13,515 Getting page https://pypi.org/simple/bionetgen/
2023-03-28T20:14:13,518 Found index url https://pypi.org/simple
2023-03-28T20:14:13,759 Fetched page https://pypi.org/simple/bionetgen/ as application/vnd.pypi.simple.v1+json
2023-03-28T20:14:13,800   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/e6/b3/a893d46a588ca1612b6a59a6fafb21167eaa80126f5f03372bd14f44db1f/bionetgen-0.2.7-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,800   Found link https://files.pythonhosted.org/packages/8b/77/a1973826370f86755f3c754fd614079c30db123c2f3c84014426d43de1ab/bionetgen-0.2.7.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.2.7
2023-03-28T20:14:13,801   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/a8/9e/e58935cc85ce97feecf4795cd73318eda7cc19160570d679e8a69893d761/bionetgen-0.2.9-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,802   Found link https://files.pythonhosted.org/packages/60/97/da115de68d2cb06335a25ca27c1d0f51fb6995bfb0edecf703c7c9d566e2/bionetgen-0.2.9.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.2.9
2023-03-28T20:14:13,802   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/fd/58/eb48ea64b8add145ab85986be2d1f5cb803c157d96324326f4552c589d25/bionetgen-0.3.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,803   Found link https://files.pythonhosted.org/packages/4a/b9/b02e5302ce90ae25d31669953809f2f2dc89cfb6a7929bc630f322229080/bionetgen-0.3.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.0
2023-03-28T20:14:13,804   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/8d/02/a62cbc6b5b039fe62199dd264387be08c163bf3de4b6adc9ba596ef82bd8/bionetgen-0.3.1-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,804   Found link https://files.pythonhosted.org/packages/5f/1c/1265d1a89b35dee83def238b274a4650ef653b3a325c9399e0c7072bec94/bionetgen-0.3.1.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.1
2023-03-28T20:14:13,805   Found link https://files.pythonhosted.org/packages/bc/0a/12b0cc2800c6027302f8b21d31a8909a7c06000f5ce4d9e73288fd9cc442/bionetgen-0.3.2.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.2
2023-03-28T20:14:13,805   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/10/70/f78c30f58893583b15e305d4d5f575998b8aa1b0d8bddd50c40bc20d4c72/bionetgen-0.3.3-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,806   Found link https://files.pythonhosted.org/packages/1f/9b/9489a0427b6fa0dcebfc86cb8b97d1e6803102baa0fefd533b0ccd97489c/bionetgen-0.3.3.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.3
2023-03-28T20:14:13,807   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/88/39/cfe6e91621c8eb0ca89d3c3c18f58a638b96edbcd66b18cdd3c3329d4459/bionetgen-0.3.4-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,807   Found link https://files.pythonhosted.org/packages/57/eb/855cb6b223f38bc06c320c14271cfa488e8f5582efc8b18d7d544d707822/bionetgen-0.3.4.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.4
2023-03-28T20:14:13,808   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/3f/44/002d294451ca19921ad37f4b240620ad6ec699a3e13e980d80675a8c4faf/bionetgen-0.3.5-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,809   Found link https://files.pythonhosted.org/packages/d1/a2/52c81f4a2d37efcde57207ce623f38304972421ffdd4596a196816e1a2f2/bionetgen-0.3.5.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.5
2023-03-28T20:14:13,809   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/96/0f/2c3b6d03dc5814093bd899957a3b62606cd17b984e8e59f576fcad6596f4/bionetgen-0.3.7-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,810   Found link https://files.pythonhosted.org/packages/da/ae/cad793910aefa7820df164f2f98d73358c29e3cec6c4e71462cadf2447bb/bionetgen-0.3.7.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.7
2023-03-28T20:14:13,810   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/17/74/1c26bb9b930f829068ee42bc4d2442f93a9e3a76ebbc7d3d597d60bd9740/bionetgen-0.3.8-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,811   Found link https://files.pythonhosted.org/packages/c0/92/b7500051998b3edb5f2d95edecdbcea753552fd820009f6783b050cab687/bionetgen-0.3.8.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.8
2023-03-28T20:14:13,812   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/56/dd/090c573b908095d993c9aa5950a9b159fb212fae38e883f9b1a0ac196d4a/bionetgen-0.3.9-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,812   Found link https://files.pythonhosted.org/packages/b2/7c/b24930fdf77b18acde646de235225fe9a514423e86259ea00bd058c1f042/bionetgen-0.3.9.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.9
2023-03-28T20:14:13,813   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/15/44/132c8c88f5960ce1c3221f9f6c1d4fb33a0fb65a11f7b5446d146f4ea5a4/bionetgen-0.4.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,813   Found link https://files.pythonhosted.org/packages/94/e8/0645b78778349e6e6c16db375db8c525b1955335f7d1ef596dbae0ea1699/bionetgen-0.4.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.0
2023-03-28T20:14:13,814   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/ee/30/387ec7efdcf880dd53cda89fb190781699106d5b879bdbd5a3b02581faf2/bionetgen-0.4.1-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,815   Found link https://files.pythonhosted.org/packages/62/d2/d5bf0bc0b9a4190c1910191c0b9a5e37d84bae9f02151e051f3ff499fba5/bionetgen-0.4.1.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.1
2023-03-28T20:14:13,815   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/81/d4/79f2d2a12bffb285e4f997950d06ee110b5f3bc27429927feb15ebe80171/bionetgen-0.4.2-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,816   Found link https://files.pythonhosted.org/packages/04/64/a0ae32a6426834a017a74389de629a1c5031221a173f7d6b46f239818ae6/bionetgen-0.4.2.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.2
2023-03-28T20:14:13,816   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/e9/99/aefc24dbffd1b1a4c3ed22195566a4ae72097b3768acfc03b4d0770580c5/bionetgen-0.4.3-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,817   Found link https://files.pythonhosted.org/packages/e9/ce/ca95b1ebad09c1773bdc1c56143b419a71bed8cf54c245baf7a2a75876b1/bionetgen-0.4.3.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.3
2023-03-28T20:14:13,818   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/cd/89/1967b9731f3eb80ca652c6940a7e81d42c3efef15e6ee58ddcb98dd55fa8/bionetgen-0.4.4-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,818   Found link https://files.pythonhosted.org/packages/9b/a3/bd276dc1574ca60bc312570909df86b0466f4e5d3408b63a38e05403f2f2/bionetgen-0.4.4.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.4
2023-03-28T20:14:13,819   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/b0/b3/93a6053a7574695e325daf76f182bfd6d53a0eea4e231fd6466e2716cabc/bionetgen-0.4.5-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,820   Found link https://files.pythonhosted.org/packages/aa/60/b4fba06e15f07edfd93184fa6f448008163f6488d77ae6dd7ff03412c51b/bionetgen-0.4.5.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.5
2023-03-28T20:14:13,820   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/20/3a/892d36557a3542ec72ebfe27cc3e0ec5fc239093c808b26d9946bbac45a8/bionetgen-0.4.6-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,821   Found link https://files.pythonhosted.org/packages/eb/c4/f214b38bb066528f18bdca03a7cb5a87689a1c847741db288e4c58b0d6e1/bionetgen-0.4.6.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.6
2023-03-28T20:14:13,821   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/7a/30/8ad58742429beca1ff92cc4837271beafd3c64f04914e78be76924a611b5/bionetgen-0.4.7-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,822   Found link https://files.pythonhosted.org/packages/72/13/7d564b2d4e26b0ec8a2aabc5389b4a7250cf90f862d1e0b5625ff4ffb5d6/bionetgen-0.4.7.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.7
2023-03-28T20:14:13,823   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/9f/5b/f8201d39e1848e21a572f965641180ebbb7666f44277c2a7abda36413bbf/bionetgen-0.4.9-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,823   Found link https://files.pythonhosted.org/packages/8b/5d/582060cd4441f40df5c4a64ff15d47b0f920ca3ddd5200cb9a32f9b6dab8/bionetgen-0.4.9.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.9
2023-03-28T20:14:13,824   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/54/13/93321ca08c364aebe604a692d6d7a47f373689fb16494654af8646321ec2/bionetgen-0.5.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,824   Found link https://files.pythonhosted.org/packages/93/d2/260c4e0abc5322872769578be15df290059ded1787f2cea48b689073d484/bionetgen-0.5.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.0
2023-03-28T20:14:13,825   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/3a/77/3418b3c243701669785563a54eb9db56af6c03fc7a83abba87a7dfab2931/bionetgen-0.5.1-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,825   Found link https://files.pythonhosted.org/packages/4c/f0/0db11d911ca3e38720e5b6d872066c598460f5678376972e3593c68243b8/bionetgen-0.5.1.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.1
2023-03-28T20:14:13,826   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/a3/b2/ddb74a7f7ecee97aafabeeb8ab7d41d4af1d68b39fae641b03ef9cea5a96/bionetgen-0.5.2-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,827   Found link https://files.pythonhosted.org/packages/7d/53/b3a1d665d18f511a7cf86421e910fa91deaac023b11e75f2a8a1c32b464a/bionetgen-0.5.2.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.2
2023-03-28T20:14:13,827   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/e8/e2/848deecac8ecb2565313b309a9ac4a14a209e64c9a6c89c3181cb85ef143/bionetgen-0.5.3-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,828   Found link https://files.pythonhosted.org/packages/70/44/07950150920c76149dad62ff99027fe67bb13e08ef11754c6be8997d752f/bionetgen-0.5.3.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.3
2023-03-28T20:14:13,829   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/7c/a4/fb5e9dc0a723d7d19fd6baa3bb8d3a79b74bbe9b7cd7e7daea7ed74e7ad8/bionetgen-0.5.4-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,829   Found link https://files.pythonhosted.org/packages/a2/41/06462bb4718e471413356973eef816f15fa84463affcaec3c9c882f2e844/bionetgen-0.5.4.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.4
2023-03-28T20:14:13,830   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/dd/ff/db5c2ed4c02db6b677682a92419a0fc6b9a281d766e00f8ba18b01bfdedd/bionetgen-0.5.5-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,830   Found link https://files.pythonhosted.org/packages/99/a6/dbea265d5bad01626c8fafdb1c7b34abbe2bfdbce697116346c7e05be206/bionetgen-0.5.5.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.5
2023-03-28T20:14:13,831   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/0d/09/96950b046f8acbf08f71b08f107a7b060858867ca74ae2cb208aba504649/bionetgen-0.5.6-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,831   Found link https://files.pythonhosted.org/packages/c4/48/9067dd4bcf799ed37562124658290f8bccbd2b94a54498ca8ab2be89ae4e/bionetgen-0.5.6.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.6
2023-03-28T20:14:13,832   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/47/3a/fc7fffda69e350e900917813c956941c697096ca54d12868b3f7e9d6e1e6/bionetgen-0.5.7-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,833   Found link https://files.pythonhosted.org/packages/81/b0/b572a13c97bcfc904c656837e61614e1b018e2bc8e4ebec7155e2df2ad0d/bionetgen-0.5.7.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.7
2023-03-28T20:14:13,833   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/bd/82/9d96eaa801581c1c19d40fdaa80136ac543e6765bea7eb775742239130e6/bionetgen-0.5.8-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,834   Found link https://files.pythonhosted.org/packages/a1/2e/ea071ba50159f84544916161cc35d432a8b1b609c6a70c37f5f900d0075a/bionetgen-0.5.8.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.8
2023-03-28T20:14:13,834   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/60/a1/ebcf584d1fb40fdebfaefe8a73f582f8752c1e70aa53242c7663548b88e5/bionetgen-0.5.9-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,835   Found link https://files.pythonhosted.org/packages/f3/2e/6d2741c35609abc2c1ff257775a8e691e52c8a050a737fc20bf2c46ec2f7/bionetgen-0.5.9.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.9
2023-03-28T20:14:13,836   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/d5/98/5b2d3c72e76bf01f7ed0e6d900831deda233bc534fbe62d9369dd56ecb4b/bionetgen-0.6.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,836   Found link https://files.pythonhosted.org/packages/3c/0a/5b9ca15324bccb719922a7ad179c87b1ef6cf80ba4d4a53ddce2ee20ccd8/bionetgen-0.6.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.6.0
2023-03-28T20:14:13,837   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/89/21/11d94b32c433fa2c0fcfe1e1813cbc3194ac724ae9453118674d7a76aae8/bionetgen-0.6.1-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,838   Found link https://files.pythonhosted.org/packages/57/96/9afd7e6fd8a38dfae0b71563e4a1c64a7b2281364d0e216746026b0b0a97/bionetgen-0.6.1.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.6.1
2023-03-28T20:14:13,838   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/f2/a1/e0c4f5d41c5df4c40bcc78b178d4e46fecbb944eb0e8017ad01deec1f290/bionetgen-0.6.2-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,839   Found link https://files.pythonhosted.org/packages/38/07/171434cc308be745cb011476b4cb92ee86f26dd55502b3eb05986d9cf474/bionetgen-0.6.2.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.6.2
2023-03-28T20:14:13,839   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/14/96/c88b0ee82fe35836ed6bde1bd400476e44fb01927e4326d5231326bb8460/bionetgen-0.7.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,840   Found link https://files.pythonhosted.org/packages/c1/72/8d3b7365a54791c3e141066c6c627788a5426ad8716f19071dcc02a4b576/bionetgen-0.7.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.0
2023-03-28T20:14:13,841   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/c9/32/18786448b30d20628937555e27ed9256d87b365732ac2aadd4ef2af4547c/bionetgen-0.7.2-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,841   Found link https://files.pythonhosted.org/packages/69/3d/003c54c5f11e6a7a1468399fb9f2feaba8379461f8a7ab3a68ba287a8216/bionetgen-0.7.2.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.2
2023-03-28T20:14:13,842   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/1c/50/d7d1d60c01d714bfbd70d513f895e85477ca2659455f98a2581e91b85029/bionetgen-0.7.3-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,842   Found link https://files.pythonhosted.org/packages/2e/33/74910edea6ba1c79332710d5be1e720550ad6ff928c95d52a034166c8e6d/bionetgen-0.7.3.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.3
2023-03-28T20:14:13,843   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/f3/93/c9d95072013866fa911ffd7e380dde1ff196844d422c720bc2cf9ebb43a2/bionetgen-0.7.4-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,843   Found link https://files.pythonhosted.org/packages/b4/0f/1ab0c5f86952c7272c9c9d0d216e5065182407e2eec897190b4ac2c1fe6e/bionetgen-0.7.4.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.4
2023-03-28T20:14:13,844   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/81/21/0b46f621d7d53d65b7f4b0b9eacd234bd6d8647c3d36f052ba9edd4648e8/bionetgen-0.7.5-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,845   Found link https://files.pythonhosted.org/packages/3e/37/9665cc48735cee43249ef7e91337c1381b48021edce9819e0bb61238f0c7/bionetgen-0.7.5.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.5
2023-03-28T20:14:13,845   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/3f/f1/48b4ab9227841b75a330a7458e2d926626b55529413da4f1ca1b695d1008/bionetgen-0.7.6-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,846   Found link https://files.pythonhosted.org/packages/d4/c2/051f5d6fcb049e83907642eee8aed23e00ae28847b9d0df56bcca1272e5e/bionetgen-0.7.6.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.6
2023-03-28T20:14:13,846   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/5f/a1/b2d435566685eed5d1fdc9e496523adae6ddc8febf4b3717d2ca8d64cd1e/bionetgen-0.7.7-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,847   Found link https://files.pythonhosted.org/packages/4f/4a/d6169577fda44126a077cb84f4c9bf988fa006148705aac87124d9b816ff/bionetgen-0.7.7.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.7
2023-03-28T20:14:13,848   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/e4/0b/241722c296042ce1f269ea525e66cf3a61fed88e2c00848aafa663015422/bionetgen-0.7.8-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,848   Found link https://files.pythonhosted.org/packages/fb/ea/3af479ef041ee5501a88dea3a3749e1de0b1cf376444a50c0ec561d833f6/bionetgen-0.7.8.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.8
2023-03-28T20:14:13,849   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/f2/e1/12113d90c0acfd3c257dc9d4b133152e47628d3514e4412ef951a1cc9e17/bionetgen-0.7.9-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,849   Found link https://files.pythonhosted.org/packages/93/f4/23d7e296735bc5b5e4149d1c7167809d68cb669965351d441d6bac6f4bed/bionetgen-0.7.9.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.9
2023-03-28T20:14:13,850   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/5f/80/922003cc48c2eaa32a0722102667ac51a5e89216c507a1dbeaafd83120dc/bionetgen-0.8.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-03-28T20:14:13,851   Found link https://files.pythonhosted.org/packages/4d/1e/32dd08837b4a182b364a9d961d7a36dbd953eb68f98600c3b93fe8d1b9ca/bionetgen-0.8.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.8.0
2023-03-28T20:14:13,852 Fetching project page and analyzing links: https://www.piwheels.org/simple/bionetgen/
2023-03-28T20:14:13,852 Getting page https://www.piwheels.org/simple/bionetgen/
2023-03-28T20:14:13,854 Found index url https://www.piwheels.org/simple
2023-03-28T20:14:14,075 Fetched page https://www.piwheels.org/simple/bionetgen/ as text/html
2023-03-28T20:14:14,082   Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.3.5-py3-none-any.whl#sha256=a940a7f8be7f8b9f9208d837c2530709df723e59fdce7f729104b124537048ef (from https://www.piwheels.org/simple/bionetgen/)
2023-03-28T20:14:14,083   Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.3.4-py3-none-any.whl#sha256=1363d4463b7d016634f411e5714484ab005566c6194146f8e28389fa80d6bd8e (from https://www.piwheels.org/simple/bionetgen/)
2023-03-28T20:14:14,083   Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.3.3-py3-none-any.whl#sha256=6406b457ade36823c9ed9f97e2ef2f80c0cd78826b28346f869cff7726c0ce14 (from https://www.piwheels.org/simple/bionetgen/)
2023-03-28T20:14:14,084   Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.3.1-py3-none-any.whl#sha256=fca4945c5fdf63233bc2923b1ce64c4e6069f15abb0581f7016aab3e31a99040 (from https://www.piwheels.org/simple/bionetgen/)
2023-03-28T20:14:14,084   Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.3.0-py3-none-any.whl#sha256=6edb99b707a5cfd75433f906e9d28f809e31110074fc71c3d5d0422be4ba5df2 (from https://www.piwheels.org/simple/bionetgen/)
2023-03-28T20:14:14,085   Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.2.9-py3-none-any.whl#sha256=22fc780a6e557c20a3e8bbe6192ef53fdec8ea5376bc17125dae1b50a1efec1d (from https://www.piwheels.org/simple/bionetgen/)
2023-03-28T20:14:14,085   Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.2.7-py3-none-any.whl#sha256=ce9ef4a22cdb47a02688c4e132e24be6b66f4ffd3594b44ed0746df961106db1 (from https://www.piwheels.org/simple/bionetgen/)
2023-03-28T20:14:14,086 Skipping link: not a file: https://www.piwheels.org/simple/bionetgen/
2023-03-28T20:14:14,086 Skipping link: not a file: https://pypi.org/simple/bionetgen/
2023-03-28T20:14:14,135 Given no hashes to check 1 links for project 'bionetgen': discarding no candidates
2023-03-28T20:14:14,166 Collecting bionetgen==0.8.0
2023-03-28T20:14:14,171   Created temporary directory: /tmp/pip-unpack-98zctm1b
2023-03-28T20:14:14,549   Downloading bionetgen-0.8.0.tar.gz (9.9 MB)
2023-03-28T20:14:24,714   Added bionetgen==0.8.0 from https://files.pythonhosted.org/packages/4d/1e/32dd08837b4a182b364a9d961d7a36dbd953eb68f98600c3b93fe8d1b9ca/bionetgen-0.8.0.tar.gz to build tracker '/tmp/pip-build-tracker-eci5kz_s'
2023-03-28T20:14:24,717   Running setup.py (path:/tmp/pip-wheel-00x955ay/bionetgen_795288e65a194ec3a7ae1ad0fe7b9c7f/setup.py) egg_info for package bionetgen
2023-03-28T20:14:24,719   Created temporary directory: /tmp/pip-pip-egg-info-i3sc11yi
2023-03-28T20:14:24,719   Preparing metadata (setup.py): started
2023-03-28T20:14:24,721   Running command python setup.py egg_info
2023-03-28T20:14:28,470   Defaulting to user installation because normal site-packages is not writeable
2023-03-28T20:14:29,791   Requirement already satisfied: numpy in /usr/local/lib/python3.7/dist-packages (1.21.4)
2023-03-28T20:15:25,184   running egg_info
2023-03-28T20:15:25,188   creating /tmp/pip-pip-egg-info-i3sc11yi/bionetgen.egg-info
2023-03-28T20:15:25,251   writing /tmp/pip-pip-egg-info-i3sc11yi/bionetgen.egg-info/PKG-INFO
2023-03-28T20:15:25,256   writing dependency_links to /tmp/pip-pip-egg-info-i3sc11yi/bionetgen.egg-info/dependency_links.txt
2023-03-28T20:15:25,260   writing entry points to /tmp/pip-pip-egg-info-i3sc11yi/bionetgen.egg-info/entry_points.txt
2023-03-28T20:15:25,263   writing requirements to /tmp/pip-pip-egg-info-i3sc11yi/bionetgen.egg-info/requires.txt
2023-03-28T20:15:25,265   writing top-level names to /tmp/pip-pip-egg-info-i3sc11yi/bionetgen.egg-info/top_level.txt
2023-03-28T20:15:25,268   writing manifest file '/tmp/pip-pip-egg-info-i3sc11yi/bionetgen.egg-info/SOURCES.txt'
2023-03-28T20:15:25,502   reading manifest file '/tmp/pip-pip-egg-info-i3sc11yi/bionetgen.egg-info/SOURCES.txt'
2023-03-28T20:15:25,505   reading manifest template 'MANIFEST.in'
2023-03-28T20:15:25,508   warning: manifest_maker: MANIFEST.in, line 1: 'recursive-include' expects <dir> <pattern1> <pattern2> ...

2023-03-28T20:15:25,509   warning: manifest_maker: MANIFEST.in, line 2: 'recursive-include' expects <dir> <pattern1> <pattern2> ...

2023-03-28T20:15:25,752   adding license file 'LICENSE'
2023-03-28T20:15:25,790   writing manifest file '/tmp/pip-pip-egg-info-i3sc11yi/bionetgen.egg-info/SOURCES.txt'
2023-03-28T20:15:25,923   Preparing metadata (setup.py): finished with status 'done'
2023-03-28T20:15:25,936   Source in /tmp/pip-wheel-00x955ay/bionetgen_795288e65a194ec3a7ae1ad0fe7b9c7f has version 0.8.0, which satisfies requirement bionetgen==0.8.0 from https://files.pythonhosted.org/packages/4d/1e/32dd08837b4a182b364a9d961d7a36dbd953eb68f98600c3b93fe8d1b9ca/bionetgen-0.8.0.tar.gz
2023-03-28T20:15:25,938   Removed bionetgen==0.8.0 from https://files.pythonhosted.org/packages/4d/1e/32dd08837b4a182b364a9d961d7a36dbd953eb68f98600c3b93fe8d1b9ca/bionetgen-0.8.0.tar.gz from build tracker '/tmp/pip-build-tracker-eci5kz_s'
2023-03-28T20:15:25,949 Created temporary directory: /tmp/pip-unpack-tzcu1k5x
2023-03-28T20:15:25,951 Building wheels for collected packages: bionetgen
2023-03-28T20:15:25,959   Created temporary directory: /tmp/pip-wheel-j6om0g_3
2023-03-28T20:15:25,960   Building wheel for bionetgen (setup.py): started
2023-03-28T20:15:25,962   Destination directory: /tmp/pip-wheel-j6om0g_3
2023-03-28T20:15:25,962   Running command python setup.py bdist_wheel
2023-03-28T20:15:29,972   Defaulting to user installation because normal site-packages is not writeable
2023-03-28T20:15:31,397   Requirement already satisfied: numpy in /usr/local/lib/python3.7/dist-packages (1.21.4)
2023-03-28T20:16:23,999   running bdist_wheel
2023-03-28T20:16:24,779   running build
2023-03-28T20:16:24,779   running build_py
2023-03-28T20:16:24,854   creating build
2023-03-28T20:16:24,855   creating build/lib
2023-03-28T20:16:24,857   creating build/lib/bionetgen
2023-03-28T20:16:24,859   copying bionetgen/main.py -> build/lib/bionetgen
2023-03-28T20:16:24,866   copying bionetgen/__init__.py -> build/lib/bionetgen
2023-03-28T20:16:24,871   creating build/lib/bionetgen/network
2023-03-28T20:16:24,874   copying bionetgen/network/networkparser.py -> build/lib/bionetgen/network
2023-03-28T20:16:24,880   copying bionetgen/network/structs.py -> build/lib/bionetgen/network
2023-03-28T20:16:24,885   copying bionetgen/network/__init__.py -> build/lib/bionetgen/network
2023-03-28T20:16:24,889   copying bionetgen/network/network.py -> build/lib/bionetgen/network
2023-03-28T20:16:24,894   copying bionetgen/network/blocks.py -> build/lib/bionetgen/network
2023-03-28T20:16:24,902   creating build/lib/bionetgen/atomizer
2023-03-28T20:16:24,905   copying bionetgen/atomizer/biogrid.py -> build/lib/bionetgen/atomizer
2023-03-28T20:16:24,910   copying bionetgen/atomizer/parseAnnotation.py -> build/lib/bionetgen/atomizer
2023-03-28T20:16:24,914   copying bionetgen/atomizer/libsbml2bngl.py -> build/lib/bionetgen/atomizer
2023-03-28T20:16:24,922   copying bionetgen/atomizer/sbmlTranslator.py -> build/lib/bionetgen/atomizer
2023-03-28T20:16:24,927   copying bionetgen/atomizer/bngModel.py -> build/lib/bionetgen/atomizer
2023-03-28T20:16:24,936   copying bionetgen/atomizer/sbml2json.py -> build/lib/bionetgen/atomizer
2023-03-28T20:16:24,941   copying bionetgen/atomizer/atomizeTool.py -> build/lib/bionetgen/atomizer
2023-03-28T20:16:24,947   copying bionetgen/atomizer/contactMap.py -> build/lib/bionetgen/atomizer
2023-03-28T20:16:24,952   copying bionetgen/atomizer/__init__.py -> build/lib/bionetgen/atomizer
2023-03-28T20:16:24,956   copying bionetgen/atomizer/contextAnalyzer.py -> build/lib/bionetgen/atomizer
2023-03-28T20:16:24,961   copying bionetgen/atomizer/sbml2bngl.py -> build/lib/bionetgen/atomizer
2023-03-28T20:16:24,975   creating build/lib/bionetgen/core
2023-03-28T20:16:24,978   copying bionetgen/core/main.py -> build/lib/bionetgen/core
2023-03-28T20:16:24,983   copying bionetgen/core/version.py -> build/lib/bionetgen/core
2023-03-28T20:16:24,988   copying bionetgen/core/notebook.py -> build/lib/bionetgen/core
2023-03-28T20:16:24,992   copying bionetgen/core/__init__.py -> build/lib/bionetgen/core
2023-03-28T20:16:24,995   copying bionetgen/core/exc.py -> build/lib/bionetgen/core
2023-03-28T20:16:25,000   copying bionetgen/core/defaults.py -> build/lib/bionetgen/core
2023-03-28T20:16:25,006   creating build/lib/bionetgen/simulator
2023-03-28T20:16:25,008   copying bionetgen/simulator/csimulator.py -> build/lib/bionetgen/simulator
2023-03-28T20:16:25,014   copying bionetgen/simulator/librrsimulator.py -> build/lib/bionetgen/simulator
2023-03-28T20:16:25,018   copying bionetgen/simulator/simulators.py -> build/lib/bionetgen/simulator
2023-03-28T20:16:25,023   copying bionetgen/simulator/bngsimulator.py -> build/lib/bionetgen/simulator
2023-03-28T20:16:25,027   copying bionetgen/simulator/__init__.py -> build/lib/bionetgen/simulator
2023-03-28T20:16:25,033   creating build/lib/bionetgen/modelapi
2023-03-28T20:16:25,035   copying bionetgen/modelapi/rulemod.py -> build/lib/bionetgen/modelapi
2023-03-28T20:16:25,040   copying bionetgen/modelapi/bngfile.py -> build/lib/bionetgen/modelapi
2023-03-28T20:16:25,045   copying bionetgen/modelapi/bngparser.py -> build/lib/bionetgen/modelapi
2023-03-28T20:16:25,051   copying bionetgen/modelapi/structs.py -> build/lib/bionetgen/modelapi
2023-03-28T20:16:25,056   copying bionetgen/modelapi/xmlparsers.py -> build/lib/bionetgen/modelapi
2023-03-28T20:16:25,062   copying bionetgen/modelapi/runner.py -> build/lib/bionetgen/modelapi
2023-03-28T20:16:25,066   copying bionetgen/modelapi/__init__.py -> build/lib/bionetgen/modelapi
2023-03-28T20:16:25,071   copying bionetgen/modelapi/pattern.py -> build/lib/bionetgen/modelapi
2023-03-28T20:16:25,077   copying bionetgen/modelapi/pattern_reader.py -> build/lib/bionetgen/modelapi
2023-03-28T20:16:25,082   copying bionetgen/modelapi/blocks.py -> build/lib/bionetgen/modelapi
2023-03-28T20:16:25,088   copying bionetgen/modelapi/model.py -> build/lib/bionetgen/modelapi
2023-03-28T20:16:25,095   creating build/lib/bionetgen/atomizer/atomizer
2023-03-28T20:16:25,098   copying bionetgen/atomizer/atomizer/moleculeCreation.py -> build/lib/bionetgen/atomizer/atomizer
2023-03-28T20:16:25,105   copying bionetgen/atomizer/atomizer/atomizationAux.py -> build/lib/bionetgen/atomizer/atomizer
2023-03-28T20:16:25,109   copying bionetgen/atomizer/atomizer/atomizerUtils.py -> build/lib/bionetgen/atomizer/atomizer
2023-03-28T20:16:25,113   copying bionetgen/atomizer/atomizer/detectOntology.py -> build/lib/bionetgen/atomizer/atomizer
2023-03-28T20:16:25,117   copying bionetgen/atomizer/atomizer/analyzeSBML.py -> build/lib/bionetgen/atomizer/atomizer
2023-03-28T20:16:25,127   copying bionetgen/atomizer/atomizer/__init__.py -> build/lib/bionetgen/atomizer/atomizer
2023-03-28T20:16:25,130   copying bionetgen/atomizer/atomizer/analyzeRDF.py -> build/lib/bionetgen/atomizer/atomizer
2023-03-28T20:16:25,134   copying bionetgen/atomizer/atomizer/resolveSCT.py -> build/lib/bionetgen/atomizer/atomizer
2023-03-28T20:16:25,148   creating build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,149   copying bionetgen/atomizer/utils/smallStructures.py -> build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,156   copying bionetgen/atomizer/utils/annotationDeletion.py -> build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,161   copying bionetgen/atomizer/utils/util.py -> build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,166   copying bionetgen/atomizer/utils/structures.py -> build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,172   copying bionetgen/atomizer/utils/nameNormalizer.py -> build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,176   copying bionetgen/atomizer/utils/annotationComparison.py -> build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,181   copying bionetgen/atomizer/utils/annotationResolver.py -> build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,185   copying bionetgen/atomizer/utils/annotationExtender.py -> build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,191   copying bionetgen/atomizer/utils/extractAtomic.py -> build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,195   copying bionetgen/atomizer/utils/annotationExtractor.py -> build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,200   copying bionetgen/atomizer/utils/__init__.py -> build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,203   copying bionetgen/atomizer/utils/pathwaycommons.py -> build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,208   copying bionetgen/atomizer/utils/readBNGXML.py -> build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,213   copying bionetgen/atomizer/utils/modelComparison.py -> build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,217   copying bionetgen/atomizer/utils/consoleCommands.py -> build/lib/bionetgen/atomizer/utils
2023-03-28T20:16:25,222   creating build/lib/bionetgen/atomizer/writer
2023-03-28T20:16:25,224   copying bionetgen/atomizer/writer/bnglWriter.py -> build/lib/bionetgen/atomizer/writer
2023-03-28T20:16:25,229   copying bionetgen/atomizer/writer/__init__.py -> build/lib/bionetgen/atomizer/writer
2023-03-28T20:16:25,233   creating build/lib/bionetgen/atomizer/merging
2023-03-28T20:16:25,235   copying bionetgen/atomizer/merging/namingDatabase.py -> build/lib/bionetgen/atomizer/merging
2023-03-28T20:16:25,240   copying bionetgen/atomizer/merging/__init__.py -> build/lib/bionetgen/atomizer/merging
2023-03-28T20:16:25,243   copying bionetgen/atomizer/merging/compareNamingConventions.py -> build/lib/bionetgen/atomizer/merging
2023-03-28T20:16:25,249   creating build/lib/bionetgen/atomizer/rulifier
2023-03-28T20:16:25,251   copying bionetgen/atomizer/rulifier/stateTransitionDiagram.py -> build/lib/bionetgen/atomizer/rulifier
2023-03-28T20:16:25,255   copying bionetgen/atomizer/rulifier/arial10.py -> build/lib/bionetgen/atomizer/rulifier
2023-03-28T20:16:25,260   copying bionetgen/atomizer/rulifier/parameterExtraction.py -> build/lib/bionetgen/atomizer/rulifier
2023-03-28T20:16:25,264   copying bionetgen/atomizer/rulifier/compareModels.py -> build/lib/bionetgen/atomizer/rulifier
2023-03-28T20:16:25,269   copying bionetgen/atomizer/rulifier/componentGroups.py -> build/lib/bionetgen/atomizer/rulifier
2023-03-28T20:16:25,275   copying bionetgen/atomizer/rulifier/stdgraph.py -> build/lib/bionetgen/atomizer/rulifier
2023-03-28T20:16:25,280   copying bionetgen/atomizer/rulifier/__init__.py -> build/lib/bionetgen/atomizer/rulifier
2023-03-28T20:16:25,283   copying bionetgen/atomizer/rulifier/postAnalysis.py -> build/lib/bionetgen/atomizer/rulifier
2023-03-28T20:16:25,290   creating build/lib/bionetgen/core/tools
2023-03-28T20:16:25,292   copying bionetgen/core/tools/info.py -> build/lib/bionetgen/core/tools
2023-03-28T20:16:25,296   copying bionetgen/core/tools/result.py -> build/lib/bionetgen/core/tools
2023-03-28T20:16:25,301   copying bionetgen/core/tools/gdiff.py -> build/lib/bionetgen/core/tools
2023-03-28T20:16:25,306   copying bionetgen/core/tools/cli.py -> build/lib/bionetgen/core/tools
2023-03-28T20:16:25,310   copying bionetgen/core/tools/__init__.py -> build/lib/bionetgen/core/tools
2023-03-28T20:16:25,314   copying bionetgen/core/tools/visualize.py -> build/lib/bionetgen/core/tools
2023-03-28T20:16:25,318   copying bionetgen/core/tools/plot.py -> build/lib/bionetgen/core/tools
2023-03-28T20:16:25,323   creating build/lib/bionetgen/core/utils
2023-03-28T20:16:25,325   copying bionetgen/core/utils/utils.py -> build/lib/bionetgen/core/utils
2023-03-28T20:16:25,330   copying bionetgen/core/utils/__init__.py -> build/lib/bionetgen/core/utils
2023-03-28T20:16:25,333   copying bionetgen/core/utils/logging.py -> build/lib/bionetgen/core/utils
2023-03-28T20:16:25,337   running egg_info
2023-03-28T20:16:25,495   writing bionetgen.egg-info/PKG-INFO
2023-03-28T20:16:25,499   writing dependency_links to bionetgen.egg-info/dependency_links.txt
2023-03-28T20:16:25,503   writing entry points to bionetgen.egg-info/entry_points.txt
2023-03-28T20:16:25,506   writing requirements to bionetgen.egg-info/requires.txt
2023-03-28T20:16:25,509   writing top-level names to bionetgen.egg-info/top_level.txt
2023-03-28T20:16:25,613   reading manifest file 'bionetgen.egg-info/SOURCES.txt'
2023-03-28T20:16:25,716   reading manifest template 'MANIFEST.in'
2023-03-28T20:16:25,719   warning: manifest_maker: MANIFEST.in, line 1: 'recursive-include' expects <dir> <pattern1> <pattern2> ...

2023-03-28T20:16:25,719   warning: manifest_maker: MANIFEST.in, line 2: 'recursive-include' expects <dir> <pattern1> <pattern2> ...

2023-03-28T20:16:25,964   adding license file 'LICENSE'
2023-03-28T20:16:26,015   writing manifest file 'bionetgen.egg-info/SOURCES.txt'
2023-03-28T20:16:26,022   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'bionetgen.assets' as data is deprecated, please list it in `packages`.
2023-03-28T20:16:26,022       !!


2023-03-28T20:16:26,023       ############################
2023-03-28T20:16:26,023       # Package would be ignored #
2023-03-28T20:16:26,024       ############################
2023-03-28T20:16:26,024       Python recognizes 'bionetgen.assets' as an importable package,
2023-03-28T20:16:26,024       but it is not listed in the `packages` configuration of setuptools.

2023-03-28T20:16:26,025       'bionetgen.assets' has been automatically added to the distribution only
2023-03-28T20:16:26,025       because it may contain data files, but this behavior is likely to change
2023-03-28T20:16:26,025       in future versions of setuptools (and therefore is considered deprecated).

2023-03-28T20:16:26,026       Please make sure that 'bionetgen.assets' is included as a package by using
2023-03-28T20:16:26,026       the `packages` configuration field or the proper discovery methods
2023-03-28T20:16:26,027       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-03-28T20:16:26,027       instead of `find_packages(...)`/`find:`).

2023-03-28T20:16:26,028       You can read more about "package discovery" and "data files" on setuptools
2023-03-28T20:16:26,028       documentation page.


2023-03-28T20:16:26,029   !!

2023-03-28T20:16:26,030     check.warn(importable)
2023-03-28T20:16:26,133   creating build/lib/bionetgen/assets
2023-03-28T20:16:26,135   copying bionetgen/assets/BNGVERSION -> build/lib/bionetgen/assets
2023-03-28T20:16:26,140   copying bionetgen/assets/VERSION -> build/lib/bionetgen/assets
2023-03-28T20:16:26,144   copying bionetgen/assets/bionetgen-temp.ipynb -> build/lib/bionetgen/assets
2023-03-28T20:16:26,150   copying bionetgen/assets/bionetgen.ipynb -> build/lib/bionetgen/assets
2023-03-28T20:16:26,156   copying bionetgen/assets/get_version_json.py -> build/lib/bionetgen/assets
2023-03-28T20:16:26,160   copying bionetgen/assets/ghapi.json -> build/lib/bionetgen/assets
2023-03-28T20:16:26,165   creating build/lib/bionetgen/bng-linux
2023-03-28T20:16:26,167   copying bionetgen/bng-linux/BNG2.pl -> build/lib/bionetgen/bng-linux
2023-03-28T20:16:26,174   copying bionetgen/bng-linux/VERSION -> build/lib/bionetgen/bng-linux
2023-03-28T20:16:26,179   creating build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,180   copying bionetgen/bng-linux/Perl2/BNGAction.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,190   copying bionetgen/bng-linux/Perl2/BNGMessages.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,194   copying bionetgen/bng-linux/Perl2/BNGModel.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,204   copying bionetgen/bng-linux/Perl2/BNGOptions.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,208   copying bionetgen/bng-linux/Perl2/BNGOutput.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,221   copying bionetgen/bng-linux/Perl2/BNGUtils.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,227   copying bionetgen/bng-linux/Perl2/Cache.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,232   copying bionetgen/bng-linux/Perl2/CartesianProduct.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,238   copying bionetgen/bng-linux/Perl2/Compartment.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,244   copying bionetgen/bng-linux/Perl2/CompartmentList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,250   copying bionetgen/bng-linux/Perl2/Component.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,256   copying bionetgen/bng-linux/Perl2/ComponentType.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,260   copying bionetgen/bng-linux/Perl2/Console.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,265   copying bionetgen/bng-linux/Perl2/EnergyPattern.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,271   copying bionetgen/bng-linux/Perl2/Expression.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,279   copying bionetgen/bng-linux/Perl2/Function.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,285   copying bionetgen/bng-linux/Perl2/HNauty.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,291   copying bionetgen/bng-linux/Perl2/MacroBNG2.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,295   copying bionetgen/bng-linux/Perl2/MacroBNGModel.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,304   copying bionetgen/bng-linux/Perl2/Map.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,308   copying bionetgen/bng-linux/Perl2/ModelWrapper.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,312   copying bionetgen/bng-linux/Perl2/Molecule.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,318   copying bionetgen/bng-linux/Perl2/MoleculeType.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,323   copying bionetgen/bng-linux/Perl2/MoleculeTypesList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,328   copying bionetgen/bng-linux/Perl2/Observable.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,334   copying bionetgen/bng-linux/Perl2/Param.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,338   copying bionetgen/bng-linux/Perl2/ParamList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,344   copying bionetgen/bng-linux/Perl2/Population.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,349   copying bionetgen/bng-linux/Perl2/PopulationList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,353   copying bionetgen/bng-linux/Perl2/RateLaw.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,359   copying bionetgen/bng-linux/Perl2/RefineRule.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,365   copying bionetgen/bng-linux/Perl2/Rxn.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,370   copying bionetgen/bng-linux/Perl2/RxnList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,375   copying bionetgen/bng-linux/Perl2/RxnRule.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,387   copying bionetgen/bng-linux/Perl2/SBMLMultiAux.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,393   copying bionetgen/bng-linux/Perl2/Species.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,397   copying bionetgen/bng-linux/Perl2/SpeciesGraph.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,407   copying bionetgen/bng-linux/Perl2/SpeciesList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,413   copying bionetgen/bng-linux/Perl2/XMLReader.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,417   copying bionetgen/bng-linux/Perl2/auto_hpp.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,422   copying bionetgen/bng-linux/Perl2/diff_net.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,426   copying bionetgen/bng-linux/Perl2/sample_vars_2.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,432   copying bionetgen/bng-linux/Perl2/scan_var.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,437   copying bionetgen/bng-linux/Perl2/test_cartesianproduct.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,441   copying bionetgen/bng-linux/Perl2/verify.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-03-28T20:16:26,445   creating build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,447   copying bionetgen/bng-linux/Perl2/Aux2/MakeBin.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,451   copying bionetgen/bng-linux/Perl2/Aux2/bnglstat.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,455   copying bionetgen/bng-linux/Perl2/Aux2/count_blocks.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,459   copying bionetgen/bng-linux/Perl2/Aux2/count_lines.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,463   copying bionetgen/bng-linux/Perl2/Aux2/countdown.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,468   copying bionetgen/bng-linux/Perl2/Aux2/diff_cdat.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,472   copying bionetgen/bng-linux/Perl2/Aux2/express.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,476   copying bionetgen/bng-linux/Perl2/Aux2/express_main.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,480   copying bionetgen/bng-linux/Perl2/Aux2/group_size.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,484   copying bionetgen/bng-linux/Perl2/Aux2/runBNG.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,489   copying bionetgen/bng-linux/Perl2/Aux2/test.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,492   copying bionetgen/bng-linux/Perl2/Aux2/test_compartment.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,496   copying bionetgen/bng-linux/Perl2/Aux2/test_molorder.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,501   copying bionetgen/bng-linux/Perl2/Aux2/test_redirect.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,505   copying bionetgen/bng-linux/Perl2/Aux2/test_sub.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:26,509   creating build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-03-28T20:16:26,510   copying bionetgen/bng-linux/Perl2/Boolean2BNGL/ABC_example.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-03-28T20:16:26,515   copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-03-28T20:16:26,520   copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-03-28T20:16:26,524   copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-03-28T20:16:26,528   copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-03-28T20:16:26,532   creating build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:26,534   copying bionetgen/bng-linux/Perl2/Visualization/ContactMap.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:26,538   copying bionetgen/bng-linux/Perl2/Visualization/GML.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:26,546   copying bionetgen/bng-linux/Perl2/Visualization/NetworkGraph.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:26,552   copying bionetgen/bng-linux/Perl2/Visualization/ProcessGraph.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:26,557   copying bionetgen/bng-linux/Perl2/Visualization/README -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:26,561   copying bionetgen/bng-linux/Perl2/Visualization/RINF.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:26,565   copying bionetgen/bng-linux/Perl2/Visualization/StructureGraph.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:26,570   copying bionetgen/bng-linux/Perl2/Visualization/VisOptParse.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:26,574   copying bionetgen/bng-linux/Perl2/Visualization/Viz.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:26,582   copying bionetgen/bng-linux/Perl2/Visualization/analyze.pl -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:26,587   copying bionetgen/bng-linux/Perl2/Visualization/readGML.pl -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:26,592   copying bionetgen/bng-linux/Perl2/Visualization/visualize.pl -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:26,596   creating build/lib/bionetgen/bng-linux/Perl2/XML
2023-03-28T20:16:26,598   copying bionetgen/bng-linux/Perl2/XML/TreePP.pm -> build/lib/bionetgen/bng-linux/Perl2/XML
2023-03-28T20:16:26,606   creating build/lib/bionetgen/bng-linux/bin
2023-03-28T20:16:26,608   copying bionetgen/bng-linux/bin/NFsim -> build/lib/bionetgen/bng-linux/bin
2023-03-28T20:16:26,752   copying bionetgen/bng-linux/bin/run_network -> build/lib/bionetgen/bng-linux/bin
2023-03-28T20:16:26,895   copying bionetgen/bng-linux/bin/sundials-config -> build/lib/bionetgen/bng-linux/bin
2023-03-28T20:16:26,900   creating build/lib/bionetgen/bng-mac
2023-03-28T20:16:26,901   copying bionetgen/bng-mac/BNG2.pl -> build/lib/bionetgen/bng-mac
2023-03-28T20:16:26,907   copying bionetgen/bng-mac/VERSION -> build/lib/bionetgen/bng-mac
2023-03-28T20:16:26,912   creating build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:26,913   copying bionetgen/bng-mac/Perl2/BNGAction.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:26,922   copying bionetgen/bng-mac/Perl2/BNGMessages.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:26,926   copying bionetgen/bng-mac/Perl2/BNGModel.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:26,936   copying bionetgen/bng-mac/Perl2/BNGOptions.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:26,940   copying bionetgen/bng-mac/Perl2/BNGOutput.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:26,954   copying bionetgen/bng-mac/Perl2/BNGUtils.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:26,959   copying bionetgen/bng-mac/Perl2/Cache.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:26,963   copying bionetgen/bng-mac/Perl2/CartesianProduct.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:26,968   copying bionetgen/bng-mac/Perl2/Compartment.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:26,973   copying bionetgen/bng-mac/Perl2/CompartmentList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:26,978   copying bionetgen/bng-mac/Perl2/Component.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:26,983   copying bionetgen/bng-mac/Perl2/ComponentType.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:26,988   copying bionetgen/bng-mac/Perl2/Console.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:26,993   copying bionetgen/bng-mac/Perl2/EnergyPattern.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:26,998   copying bionetgen/bng-mac/Perl2/Expression.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,007   copying bionetgen/bng-mac/Perl2/Function.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,012   copying bionetgen/bng-mac/Perl2/HNauty.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,019   copying bionetgen/bng-mac/Perl2/MacroBNG2.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,023   copying bionetgen/bng-mac/Perl2/MacroBNGModel.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,031   copying bionetgen/bng-mac/Perl2/Map.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,036   copying bionetgen/bng-mac/Perl2/ModelWrapper.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,040   copying bionetgen/bng-mac/Perl2/Molecule.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,045   copying bionetgen/bng-mac/Perl2/MoleculeType.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,051   copying bionetgen/bng-mac/Perl2/MoleculeTypesList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,056   copying bionetgen/bng-mac/Perl2/Observable.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,062   copying bionetgen/bng-mac/Perl2/Param.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,066   copying bionetgen/bng-mac/Perl2/ParamList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,073   copying bionetgen/bng-mac/Perl2/Population.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,077   copying bionetgen/bng-mac/Perl2/PopulationList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,081   copying bionetgen/bng-mac/Perl2/RateLaw.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,088   copying bionetgen/bng-mac/Perl2/RefineRule.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,094   copying bionetgen/bng-mac/Perl2/Rxn.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,099   copying bionetgen/bng-mac/Perl2/RxnList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,104   copying bionetgen/bng-mac/Perl2/RxnRule.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,115   copying bionetgen/bng-mac/Perl2/SBMLMultiAux.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,121   copying bionetgen/bng-mac/Perl2/Species.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,125   copying bionetgen/bng-mac/Perl2/SpeciesGraph.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,135   copying bionetgen/bng-mac/Perl2/SpeciesList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,141   copying bionetgen/bng-mac/Perl2/XMLReader.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,145   copying bionetgen/bng-mac/Perl2/auto_hpp.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,150   copying bionetgen/bng-mac/Perl2/diff_net.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,155   copying bionetgen/bng-mac/Perl2/sample_vars_2.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,161   copying bionetgen/bng-mac/Perl2/scan_var.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,166   copying bionetgen/bng-mac/Perl2/test_cartesianproduct.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,170   copying bionetgen/bng-mac/Perl2/verify.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-03-28T20:16:27,175   creating build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,176   copying bionetgen/bng-mac/Perl2/Aux2/MakeBin.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,180   copying bionetgen/bng-mac/Perl2/Aux2/bnglstat.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,184   copying bionetgen/bng-mac/Perl2/Aux2/count_blocks.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,189   copying bionetgen/bng-mac/Perl2/Aux2/count_lines.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,193   copying bionetgen/bng-mac/Perl2/Aux2/countdown.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,197   copying bionetgen/bng-mac/Perl2/Aux2/diff_cdat.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,201   copying bionetgen/bng-mac/Perl2/Aux2/express.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,205   copying bionetgen/bng-mac/Perl2/Aux2/express_main.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,209   copying bionetgen/bng-mac/Perl2/Aux2/group_size.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,213   copying bionetgen/bng-mac/Perl2/Aux2/runBNG.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,217   copying bionetgen/bng-mac/Perl2/Aux2/test.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,221   copying bionetgen/bng-mac/Perl2/Aux2/test_compartment.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,225   copying bionetgen/bng-mac/Perl2/Aux2/test_molorder.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,229   copying bionetgen/bng-mac/Perl2/Aux2/test_redirect.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,233   copying bionetgen/bng-mac/Perl2/Aux2/test_sub.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:27,237   creating build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-03-28T20:16:27,239   copying bionetgen/bng-mac/Perl2/Boolean2BNGL/ABC_example.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-03-28T20:16:27,243   copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-03-28T20:16:27,248   copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-03-28T20:16:27,252   copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-03-28T20:16:27,256   copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-03-28T20:16:27,260   creating build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:27,262   copying bionetgen/bng-mac/Perl2/Visualization/ContactMap.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:27,266   copying bionetgen/bng-mac/Perl2/Visualization/GML.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:27,274   copying bionetgen/bng-mac/Perl2/Visualization/NetworkGraph.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:27,280   copying bionetgen/bng-mac/Perl2/Visualization/ProcessGraph.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:27,285   copying bionetgen/bng-mac/Perl2/Visualization/README -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:27,289   copying bionetgen/bng-mac/Perl2/Visualization/RINF.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:27,293   copying bionetgen/bng-mac/Perl2/Visualization/StructureGraph.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:27,299   copying bionetgen/bng-mac/Perl2/Visualization/VisOptParse.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:27,303   copying bionetgen/bng-mac/Perl2/Visualization/Viz.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:27,310   copying bionetgen/bng-mac/Perl2/Visualization/analyze.pl -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:27,315   copying bionetgen/bng-mac/Perl2/Visualization/readGML.pl -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:27,320   copying bionetgen/bng-mac/Perl2/Visualization/visualize.pl -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:27,324   creating build/lib/bionetgen/bng-mac/Perl2/XML
2023-03-28T20:16:27,326   copying bionetgen/bng-mac/Perl2/XML/TreePP.pm -> build/lib/bionetgen/bng-mac/Perl2/XML
2023-03-28T20:16:27,333   creating build/lib/bionetgen/bng-mac/bin
2023-03-28T20:16:27,335   copying bionetgen/bng-mac/bin/NFsim -> build/lib/bionetgen/bng-mac/bin
2023-03-28T20:16:27,452   copying bionetgen/bng-mac/bin/run_network -> build/lib/bionetgen/bng-mac/bin
2023-03-28T20:16:27,596   copying bionetgen/bng-mac/bin/sundials-config -> build/lib/bionetgen/bng-mac/bin
2023-03-28T20:16:27,601   creating build/lib/bionetgen/bng-win
2023-03-28T20:16:27,602   copying bionetgen/bng-win/BNG2.pl -> build/lib/bionetgen/bng-win
2023-03-28T20:16:27,609   copying bionetgen/bng-win/VERSION -> build/lib/bionetgen/bng-win
2023-03-28T20:16:27,613   creating build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,615   copying bionetgen/bng-win/Perl2/BNGAction.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,624   copying bionetgen/bng-win/Perl2/BNGMessages.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,628   copying bionetgen/bng-win/Perl2/BNGModel.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,640   copying bionetgen/bng-win/Perl2/BNGOptions.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,644   copying bionetgen/bng-win/Perl2/BNGOutput.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,660   copying bionetgen/bng-win/Perl2/BNGUtils.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,665   copying bionetgen/bng-win/Perl2/Cache.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,670   copying bionetgen/bng-win/Perl2/CartesianProduct.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,675   copying bionetgen/bng-win/Perl2/Compartment.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,681   copying bionetgen/bng-win/Perl2/CompartmentList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,686   copying bionetgen/bng-win/Perl2/Component.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,692   copying bionetgen/bng-win/Perl2/ComponentType.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,697   copying bionetgen/bng-win/Perl2/Console.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,702   copying bionetgen/bng-win/Perl2/EnergyPattern.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,708   copying bionetgen/bng-win/Perl2/Expression.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,718   copying bionetgen/bng-win/Perl2/Function.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,723   copying bionetgen/bng-win/Perl2/HNauty.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,730   copying bionetgen/bng-win/Perl2/MacroBNG2.pl -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,735   copying bionetgen/bng-win/Perl2/MacroBNGModel.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,746   copying bionetgen/bng-win/Perl2/Map.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,752   copying bionetgen/bng-win/Perl2/ModelWrapper.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,756   copying bionetgen/bng-win/Perl2/Molecule.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,762   copying bionetgen/bng-win/Perl2/MoleculeType.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,768   copying bionetgen/bng-win/Perl2/MoleculeTypesList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,774   copying bionetgen/bng-win/Perl2/Observable.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,780   copying bionetgen/bng-win/Perl2/Param.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,785   copying bionetgen/bng-win/Perl2/ParamList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,792   copying bionetgen/bng-win/Perl2/Population.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,797   copying bionetgen/bng-win/Perl2/PopulationList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,802   copying bionetgen/bng-win/Perl2/RateLaw.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,809   copying bionetgen/bng-win/Perl2/RefineRule.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,816   copying bionetgen/bng-win/Perl2/Rxn.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,821   copying bionetgen/bng-win/Perl2/RxnList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,827   copying bionetgen/bng-win/Perl2/RxnRule.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,839   copying bionetgen/bng-win/Perl2/SBMLMultiAux.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,844   copying bionetgen/bng-win/Perl2/Species.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,848   copying bionetgen/bng-win/Perl2/SpeciesGraph.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,858   copying bionetgen/bng-win/Perl2/SpeciesList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,865   copying bionetgen/bng-win/Perl2/XMLReader.pm -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,870   copying bionetgen/bng-win/Perl2/auto_hpp.pl -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,875   copying bionetgen/bng-win/Perl2/diff_net.pl -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,880   copying bionetgen/bng-win/Perl2/sample_vars_2.pl -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,886   copying bionetgen/bng-win/Perl2/scan_var.pl -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,891   copying bionetgen/bng-win/Perl2/test_cartesianproduct.pl -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,895   copying bionetgen/bng-win/Perl2/verify.pl -> build/lib/bionetgen/bng-win/Perl2
2023-03-28T20:16:27,900   creating build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,902   copying bionetgen/bng-win/Perl2/Aux2/MakeBin.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,908   copying bionetgen/bng-win/Perl2/Aux2/bnglstat.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,913   copying bionetgen/bng-win/Perl2/Aux2/count_blocks.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,918   copying bionetgen/bng-win/Perl2/Aux2/count_lines.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,922   copying bionetgen/bng-win/Perl2/Aux2/countdown.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,926   copying bionetgen/bng-win/Perl2/Aux2/diff_cdat.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,930   copying bionetgen/bng-win/Perl2/Aux2/express.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,935   copying bionetgen/bng-win/Perl2/Aux2/express_main.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,939   copying bionetgen/bng-win/Perl2/Aux2/group_size.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,944   copying bionetgen/bng-win/Perl2/Aux2/runBNG.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,949   copying bionetgen/bng-win/Perl2/Aux2/test.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,954   copying bionetgen/bng-win/Perl2/Aux2/test_compartment.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,959   copying bionetgen/bng-win/Perl2/Aux2/test_molorder.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,964   copying bionetgen/bng-win/Perl2/Aux2/test_redirect.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,969   copying bionetgen/bng-win/Perl2/Aux2/test_sub.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:27,973   creating build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-03-28T20:16:27,976   copying bionetgen/bng-win/Perl2/Boolean2BNGL/ABC_example.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-03-28T20:16:27,981   copying bionetgen/bng-win/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-03-28T20:16:27,987   copying bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-03-28T20:16:27,991   copying bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-03-28T20:16:27,996   copying bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-03-28T20:16:28,001   creating build/lib/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:28,004   copying bionetgen/bng-win/Perl2/Visualization/ContactMap.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:28,009   copying bionetgen/bng-win/Perl2/Visualization/GML.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:28,018   copying bionetgen/bng-win/Perl2/Visualization/NetworkGraph.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:28,024   copying bionetgen/bng-win/Perl2/Visualization/ProcessGraph.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:28,030   copying bionetgen/bng-win/Perl2/Visualization/README -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:28,035   copying bionetgen/bng-win/Perl2/Visualization/RINF.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:28,040   copying bionetgen/bng-win/Perl2/Visualization/StructureGraph.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:28,047   copying bionetgen/bng-win/Perl2/Visualization/VisOptParse.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:28,051   copying bionetgen/bng-win/Perl2/Visualization/Viz.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:28,058   copying bionetgen/bng-win/Perl2/Visualization/analyze.pl -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:28,064   copying bionetgen/bng-win/Perl2/Visualization/readGML.pl -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:28,068   copying bionetgen/bng-win/Perl2/Visualization/visualize.pl -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:28,073   creating build/lib/bionetgen/bng-win/Perl2/XML
2023-03-28T20:16:28,075   copying bionetgen/bng-win/Perl2/XML/TreePP.pm -> build/lib/bionetgen/bng-win/Perl2/XML
2023-03-28T20:16:28,083   creating build/lib/bionetgen/bng-win/bin
2023-03-28T20:16:28,085   copying bionetgen/bng-win/bin/NFsim.exe -> build/lib/bionetgen/bng-win/bin
2023-03-28T20:16:28,258   copying bionetgen/bng-win/bin/cyggcc_s-seh-1.dll -> build/lib/bionetgen/bng-win/bin
2023-03-28T20:16:28,271   copying bionetgen/bng-win/bin/cygstdc++-6.dll -> build/lib/bionetgen/bng-win/bin
2023-03-28T20:16:28,396   copying bionetgen/bng-win/bin/cygwin1.dll -> build/lib/bionetgen/bng-win/bin
2023-03-28T20:16:28,663   copying bionetgen/bng-win/bin/cygz.dll -> build/lib/bionetgen/bng-win/bin
2023-03-28T20:16:28,675   copying bionetgen/bng-win/bin/libgcc_s_dw2-1.dll -> build/lib/bionetgen/bng-win/bin
2023-03-28T20:16:28,751   copying bionetgen/bng-win/bin/libstdc++-6.dll -> build/lib/bionetgen/bng-win/bin
2023-03-28T20:16:28,867   copying bionetgen/bng-win/bin/run_network.exe -> build/lib/bionetgen/bng-win/bin
2023-03-28T20:16:29,691   copying bionetgen/bng-win/bin/sundials-config -> build/lib/bionetgen/bng-win/bin
2023-03-28T20:16:29,793   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2023-03-28T20:16:29,793     setuptools.SetuptoolsDeprecationWarning,
2023-03-28T20:16:29,861   installing to build/bdist.linux-armv7l/wheel
2023-03-28T20:16:29,862   running install
2023-03-28T20:16:29,921   running install_lib
2023-03-28T20:16:29,992   creating build/bdist.linux-armv7l
2023-03-28T20:16:29,993   creating build/bdist.linux-armv7l/wheel
2023-03-28T20:16:29,997   creating build/bdist.linux-armv7l/wheel/bionetgen
2023-03-28T20:16:29,999   copying build/lib/bionetgen/main.py -> build/bdist.linux-armv7l/wheel/bionetgen
2023-03-28T20:16:30,006   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win
2023-03-28T20:16:30,011   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,014   copying build/lib/bionetgen/bng-win/Perl2/RxnRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,026   copying build/lib/bionetgen/bng-win/Perl2/CartesianProduct.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,031   copying build/lib/bionetgen/bng-win/Perl2/RefineRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,037   copying build/lib/bionetgen/bng-win/Perl2/BNGMessages.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,042   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:30,044   copying build/lib/bionetgen/bng-win/Perl2/Visualization/ContactMap.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:30,048   copying build/lib/bionetgen/bng-win/Perl2/Visualization/GML.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:30,055   copying build/lib/bionetgen/bng-win/Perl2/Visualization/Viz.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:30,062   copying build/lib/bionetgen/bng-win/Perl2/Visualization/StructureGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:30,068   copying build/lib/bionetgen/bng-win/Perl2/Visualization/analyze.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:30,074   copying build/lib/bionetgen/bng-win/Perl2/Visualization/VisOptParse.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:30,078   copying build/lib/bionetgen/bng-win/Perl2/Visualization/readGML.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:30,082   copying build/lib/bionetgen/bng-win/Perl2/Visualization/ProcessGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:30,088   copying build/lib/bionetgen/bng-win/Perl2/Visualization/NetworkGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:30,094   copying build/lib/bionetgen/bng-win/Perl2/Visualization/README -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:30,099   copying build/lib/bionetgen/bng-win/Perl2/Visualization/visualize.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:30,103   copying build/lib/bionetgen/bng-win/Perl2/Visualization/RINF.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-03-28T20:16:30,108   copying build/lib/bionetgen/bng-win/Perl2/test_cartesianproduct.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,112   copying build/lib/bionetgen/bng-win/Perl2/Population.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,116   copying build/lib/bionetgen/bng-win/Perl2/HNauty.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,122   copying build/lib/bionetgen/bng-win/Perl2/BNGOutput.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,134   copying build/lib/bionetgen/bng-win/Perl2/Rxn.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,141   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,143   copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_redirect.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,148   copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_compartment.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,152   copying build/lib/bionetgen/bng-win/Perl2/Aux2/express_main.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,157   copying build/lib/bionetgen/bng-win/Perl2/Aux2/runBNG.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,161   copying build/lib/bionetgen/bng-win/Perl2/Aux2/diff_cdat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,165   copying build/lib/bionetgen/bng-win/Perl2/Aux2/bnglstat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,169   copying build/lib/bionetgen/bng-win/Perl2/Aux2/count_lines.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,173   copying build/lib/bionetgen/bng-win/Perl2/Aux2/count_blocks.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,178   copying build/lib/bionetgen/bng-win/Perl2/Aux2/MakeBin.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,182   copying build/lib/bionetgen/bng-win/Perl2/Aux2/test.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,187   copying build/lib/bionetgen/bng-win/Perl2/Aux2/group_size.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,191   copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_sub.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,195   copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_molorder.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,199   copying build/lib/bionetgen/bng-win/Perl2/Aux2/countdown.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,204   copying build/lib/bionetgen/bng-win/Perl2/Aux2/express.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-03-28T20:16:30,208   copying build/lib/bionetgen/bng-win/Perl2/scan_var.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,213   copying build/lib/bionetgen/bng-win/Perl2/Function.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,219   copying build/lib/bionetgen/bng-win/Perl2/verify.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,224   copying build/lib/bionetgen/bng-win/Perl2/Observable.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,230   copying build/lib/bionetgen/bng-win/Perl2/SpeciesGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,239   copying build/lib/bionetgen/bng-win/Perl2/RateLaw.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,246   copying build/lib/bionetgen/bng-win/Perl2/XMLReader.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,251   copying build/lib/bionetgen/bng-win/Perl2/BNGUtils.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,256   copying build/lib/bionetgen/bng-win/Perl2/sample_vars_2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,262   copying build/lib/bionetgen/bng-win/Perl2/BNGOptions.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,266   copying build/lib/bionetgen/bng-win/Perl2/CompartmentList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,271   copying build/lib/bionetgen/bng-win/Perl2/ComponentType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,276   copying build/lib/bionetgen/bng-win/Perl2/RxnList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,282   copying build/lib/bionetgen/bng-win/Perl2/Map.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,287   copying build/lib/bionetgen/bng-win/Perl2/diff_net.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,292   copying build/lib/bionetgen/bng-win/Perl2/MacroBNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,297   copying build/lib/bionetgen/bng-win/Perl2/EnergyPattern.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,304   copying build/lib/bionetgen/bng-win/Perl2/MacroBNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,313   copying build/lib/bionetgen/bng-win/Perl2/SBMLMultiAux.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,319   copying build/lib/bionetgen/bng-win/Perl2/Component.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,324   copying build/lib/bionetgen/bng-win/Perl2/Param.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,329   copying build/lib/bionetgen/bng-win/Perl2/BNGAction.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,339   copying build/lib/bionetgen/bng-win/Perl2/Compartment.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,344   copying build/lib/bionetgen/bng-win/Perl2/MoleculeTypesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,349   copying build/lib/bionetgen/bng-win/Perl2/Console.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,353   copying build/lib/bionetgen/bng-win/Perl2/PopulationList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,357   copying build/lib/bionetgen/bng-win/Perl2/Species.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,361   copying build/lib/bionetgen/bng-win/Perl2/ParamList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,367   copying build/lib/bionetgen/bng-win/Perl2/MoleculeType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,371   copying build/lib/bionetgen/bng-win/Perl2/SpeciesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,377   copying build/lib/bionetgen/bng-win/Perl2/Expression.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,386   copying build/lib/bionetgen/bng-win/Perl2/Molecule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,392   copying build/lib/bionetgen/bng-win/Perl2/Cache.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,396   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-03-28T20:16:30,398   copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-03-28T20:16:30,402   copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-03-28T20:16:30,406   copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-03-28T20:16:30,410   copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-03-28T20:16:30,414   copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/ABC_example.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-03-28T20:16:30,417   copying build/lib/bionetgen/bng-win/Perl2/ModelWrapper.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,421   copying build/lib/bionetgen/bng-win/Perl2/auto_hpp.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,426   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/XML
2023-03-28T20:16:30,428   copying build/lib/bionetgen/bng-win/Perl2/XML/TreePP.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/XML
2023-03-28T20:16:30,435   copying build/lib/bionetgen/bng-win/Perl2/BNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-03-28T20:16:30,445   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-03-28T20:16:30,447   copying build/lib/bionetgen/bng-win/bin/libstdc++-6.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-03-28T20:16:30,533   copying build/lib/bionetgen/bng-win/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-03-28T20:16:30,612   copying build/lib/bionetgen/bng-win/bin/sundials-config -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-03-28T20:16:30,616   copying build/lib/bionetgen/bng-win/bin/run_network.exe -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-03-28T20:16:31,118   copying build/lib/bionetgen/bng-win/bin/NFsim.exe -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-03-28T20:16:31,216   copying build/lib/bionetgen/bng-win/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-03-28T20:16:31,225   copying build/lib/bionetgen/bng-win/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-03-28T20:16:31,405   copying build/lib/bionetgen/bng-win/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-03-28T20:16:31,413   copying build/lib/bionetgen/bng-win/bin/libgcc_s_dw2-1.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-03-28T20:16:31,466   copying build/lib/bionetgen/bng-win/BNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win
2023-03-28T20:16:31,472   copying build/lib/bionetgen/bng-win/VERSION -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win
2023-03-28T20:16:31,477   creating build/bdist.linux-armv7l/wheel/bionetgen/network
2023-03-28T20:16:31,479   copying build/lib/bionetgen/network/networkparser.py -> build/bdist.linux-armv7l/wheel/bionetgen/network
2023-03-28T20:16:31,484   copying build/lib/bionetgen/network/structs.py -> build/bdist.linux-armv7l/wheel/bionetgen/network
2023-03-28T20:16:31,489   copying build/lib/bionetgen/network/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/network
2023-03-28T20:16:31,492   copying build/lib/bionetgen/network/network.py -> build/bdist.linux-armv7l/wheel/bionetgen/network
2023-03-28T20:16:31,496   copying build/lib/bionetgen/network/blocks.py -> build/bdist.linux-armv7l/wheel/bionetgen/network
2023-03-28T20:16:31,503   creating build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-03-28T20:16:31,505   copying build/lib/bionetgen/assets/bionetgen-temp.ipynb -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-03-28T20:16:31,513   copying build/lib/bionetgen/assets/get_version_json.py -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-03-28T20:16:31,516   copying build/lib/bionetgen/assets/ghapi.json -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-03-28T20:16:31,521   copying build/lib/bionetgen/assets/bionetgen.ipynb -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-03-28T20:16:31,526   copying build/lib/bionetgen/assets/VERSION -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-03-28T20:16:31,530   copying build/lib/bionetgen/assets/BNGVERSION -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-03-28T20:16:31,535   creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-03-28T20:16:31,537   copying build/lib/bionetgen/atomizer/biogrid.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-03-28T20:16:31,541   copying build/lib/bionetgen/atomizer/parseAnnotation.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-03-28T20:16:31,544   copying build/lib/bionetgen/atomizer/libsbml2bngl.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-03-28T20:16:31,556   copying build/lib/bionetgen/atomizer/sbmlTranslator.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-03-28T20:16:31,562   copying build/lib/bionetgen/atomizer/bngModel.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-03-28T20:16:31,573   creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-03-28T20:16:31,574   copying build/lib/bionetgen/atomizer/atomizer/moleculeCreation.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-03-28T20:16:31,581   copying build/lib/bionetgen/atomizer/atomizer/atomizationAux.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-03-28T20:16:31,585   copying build/lib/bionetgen/atomizer/atomizer/atomizerUtils.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-03-28T20:16:31,589   copying build/lib/bionetgen/atomizer/atomizer/detectOntology.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-03-28T20:16:31,594   copying build/lib/bionetgen/atomizer/atomizer/analyzeSBML.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-03-28T20:16:31,604   copying build/lib/bionetgen/atomizer/atomizer/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-03-28T20:16:31,607   copying build/lib/bionetgen/atomizer/atomizer/analyzeRDF.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-03-28T20:16:31,610   copying build/lib/bionetgen/atomizer/atomizer/resolveSCT.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-03-28T20:16:31,620   copying build/lib/bionetgen/atomizer/sbml2json.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-03-28T20:16:31,626   copying build/lib/bionetgen/atomizer/atomizeTool.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-03-28T20:16:31,632   creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,634   copying build/lib/bionetgen/atomizer/utils/smallStructures.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,641   copying build/lib/bionetgen/atomizer/utils/annotationDeletion.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,646   copying build/lib/bionetgen/atomizer/utils/util.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,652   copying build/lib/bionetgen/atomizer/utils/structures.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,658   copying build/lib/bionetgen/atomizer/utils/nameNormalizer.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,662   copying build/lib/bionetgen/atomizer/utils/annotationComparison.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,667   copying build/lib/bionetgen/atomizer/utils/annotationResolver.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,672   copying build/lib/bionetgen/atomizer/utils/annotationExtender.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,678   copying build/lib/bionetgen/atomizer/utils/extractAtomic.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,683   copying build/lib/bionetgen/atomizer/utils/annotationExtractor.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,688   copying build/lib/bionetgen/atomizer/utils/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,691   copying build/lib/bionetgen/atomizer/utils/pathwaycommons.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,697   copying build/lib/bionetgen/atomizer/utils/readBNGXML.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,702   copying build/lib/bionetgen/atomizer/utils/modelComparison.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,707   copying build/lib/bionetgen/atomizer/utils/consoleCommands.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-03-28T20:16:31,711   copying build/lib/bionetgen/atomizer/contactMap.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-03-28T20:16:31,715   copying build/lib/bionetgen/atomizer/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-03-28T20:16:31,718   copying build/lib/bionetgen/atomizer/contextAnalyzer.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-03-28T20:16:31,724   creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/writer
2023-03-28T20:16:31,726   copying build/lib/bionetgen/atomizer/writer/bnglWriter.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/writer
2023-03-28T20:16:31,732   copying build/lib/bionetgen/atomizer/writer/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/writer
2023-03-28T20:16:31,736   creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/merging
2023-03-28T20:16:31,739   copying build/lib/bionetgen/atomizer/merging/namingDatabase.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/merging
2023-03-28T20:16:31,745   copying build/lib/bionetgen/atomizer/merging/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/merging
2023-03-28T20:16:31,748   copying build/lib/bionetgen/atomizer/merging/compareNamingConventions.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/merging
2023-03-28T20:16:31,753   creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-03-28T20:16:31,755   copying build/lib/bionetgen/atomizer/rulifier/stateTransitionDiagram.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-03-28T20:16:31,761   copying build/lib/bionetgen/atomizer/rulifier/arial10.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-03-28T20:16:31,765   copying build/lib/bionetgen/atomizer/rulifier/parameterExtraction.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-03-28T20:16:31,769   copying build/lib/bionetgen/atomizer/rulifier/compareModels.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-03-28T20:16:31,773   copying build/lib/bionetgen/atomizer/rulifier/componentGroups.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-03-28T20:16:31,780   copying build/lib/bionetgen/atomizer/rulifier/stdgraph.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-03-28T20:16:31,785   copying build/lib/bionetgen/atomizer/rulifier/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-03-28T20:16:31,789   copying build/lib/bionetgen/atomizer/rulifier/postAnalysis.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-03-28T20:16:31,795   copying build/lib/bionetgen/atomizer/sbml2bngl.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-03-28T20:16:31,809   creating build/bdist.linux-armv7l/wheel/bionetgen/core
2023-03-28T20:16:31,810   copying build/lib/bionetgen/core/main.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-03-28T20:16:31,816   creating build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-03-28T20:16:31,818   copying build/lib/bionetgen/core/tools/info.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-03-28T20:16:31,822   copying build/lib/bionetgen/core/tools/result.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-03-28T20:16:31,826   copying build/lib/bionetgen/core/tools/gdiff.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-03-28T20:16:31,831   copying build/lib/bionetgen/core/tools/cli.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-03-28T20:16:31,836   copying build/lib/bionetgen/core/tools/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-03-28T20:16:31,839   copying build/lib/bionetgen/core/tools/visualize.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-03-28T20:16:31,843   copying build/lib/bionetgen/core/tools/plot.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-03-28T20:16:31,846   copying build/lib/bionetgen/core/version.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-03-28T20:16:31,851   creating build/bdist.linux-armv7l/wheel/bionetgen/core/utils
2023-03-28T20:16:31,852   copying build/lib/bionetgen/core/utils/utils.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/utils
2023-03-28T20:16:31,858   copying build/lib/bionetgen/core/utils/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/utils
2023-03-28T20:16:31,862   copying build/lib/bionetgen/core/utils/logging.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/utils
2023-03-28T20:16:31,866   copying build/lib/bionetgen/core/notebook.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-03-28T20:16:31,869   copying build/lib/bionetgen/core/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-03-28T20:16:31,872   copying build/lib/bionetgen/core/exc.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-03-28T20:16:31,875   copying build/lib/bionetgen/core/defaults.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-03-28T20:16:31,879   copying build/lib/bionetgen/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen
2023-03-28T20:16:31,884   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux
2023-03-28T20:16:31,888   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:31,890   copying build/lib/bionetgen/bng-linux/Perl2/RxnRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:31,901   copying build/lib/bionetgen/bng-linux/Perl2/CartesianProduct.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:31,905   copying build/lib/bionetgen/bng-linux/Perl2/RefineRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:31,910   copying build/lib/bionetgen/bng-linux/Perl2/BNGMessages.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:31,915   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:31,917   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/ContactMap.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:31,921   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/GML.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:31,929   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/Viz.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:31,937   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/StructureGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:31,942   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/analyze.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:31,947   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/VisOptParse.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:31,951   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/readGML.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:31,954   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/ProcessGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:31,959   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/NetworkGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:31,965   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/README -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:31,969   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/visualize.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:31,974   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/RINF.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-03-28T20:16:31,978   copying build/lib/bionetgen/bng-linux/Perl2/test_cartesianproduct.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:31,981   copying build/lib/bionetgen/bng-linux/Perl2/Population.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:31,985   copying build/lib/bionetgen/bng-linux/Perl2/HNauty.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:31,991   copying build/lib/bionetgen/bng-linux/Perl2/BNGOutput.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,003   copying build/lib/bionetgen/bng-linux/Perl2/Rxn.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,009   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,011   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_redirect.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,015   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_compartment.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,019   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/express_main.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,023   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/runBNG.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,026   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/diff_cdat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,030   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/bnglstat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,034   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/count_lines.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,038   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/count_blocks.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,041   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/MakeBin.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,045   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,049   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/group_size.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,052   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_sub.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,056   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_molorder.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,060   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/countdown.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,064   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/express.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-03-28T20:16:32,068   copying build/lib/bionetgen/bng-linux/Perl2/scan_var.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,073   copying build/lib/bionetgen/bng-linux/Perl2/Function.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,078   copying build/lib/bionetgen/bng-linux/Perl2/verify.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,082   copying build/lib/bionetgen/bng-linux/Perl2/Observable.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,087   copying build/lib/bionetgen/bng-linux/Perl2/SpeciesGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,096   copying build/lib/bionetgen/bng-linux/Perl2/RateLaw.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,104   copying build/lib/bionetgen/bng-linux/Perl2/XMLReader.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,108   copying build/lib/bionetgen/bng-linux/Perl2/BNGUtils.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,114   copying build/lib/bionetgen/bng-linux/Perl2/sample_vars_2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,120   copying build/lib/bionetgen/bng-linux/Perl2/BNGOptions.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,124   copying build/lib/bionetgen/bng-linux/Perl2/CompartmentList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,129   copying build/lib/bionetgen/bng-linux/Perl2/ComponentType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,134   copying build/lib/bionetgen/bng-linux/Perl2/RxnList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,139   copying build/lib/bionetgen/bng-linux/Perl2/Map.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,144   copying build/lib/bionetgen/bng-linux/Perl2/diff_net.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,149   copying build/lib/bionetgen/bng-linux/Perl2/MacroBNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,154   copying build/lib/bionetgen/bng-linux/Perl2/EnergyPattern.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,159   copying build/lib/bionetgen/bng-linux/Perl2/MacroBNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,168   copying build/lib/bionetgen/bng-linux/Perl2/SBMLMultiAux.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,174   copying build/lib/bionetgen/bng-linux/Perl2/Component.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,180   copying build/lib/bionetgen/bng-linux/Perl2/Param.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,184   copying build/lib/bionetgen/bng-linux/Perl2/BNGAction.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,194   copying build/lib/bionetgen/bng-linux/Perl2/Compartment.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,199   copying build/lib/bionetgen/bng-linux/Perl2/MoleculeTypesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,204   copying build/lib/bionetgen/bng-linux/Perl2/Console.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,208   copying build/lib/bionetgen/bng-linux/Perl2/PopulationList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,212   copying build/lib/bionetgen/bng-linux/Perl2/Species.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,217   copying build/lib/bionetgen/bng-linux/Perl2/ParamList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,223   copying build/lib/bionetgen/bng-linux/Perl2/MoleculeType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,228   copying build/lib/bionetgen/bng-linux/Perl2/SpeciesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,234   copying build/lib/bionetgen/bng-linux/Perl2/Expression.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,243   copying build/lib/bionetgen/bng-linux/Perl2/Molecule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,249   copying build/lib/bionetgen/bng-linux/Perl2/Cache.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,254   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-03-28T20:16:32,256   copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-03-28T20:16:32,260   copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-03-28T20:16:32,265   copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-03-28T20:16:32,268   copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-03-28T20:16:32,272   copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/ABC_example.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-03-28T20:16:32,276   copying build/lib/bionetgen/bng-linux/Perl2/ModelWrapper.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,280   copying build/lib/bionetgen/bng-linux/Perl2/auto_hpp.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,285   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/XML
2023-03-28T20:16:32,287   copying build/lib/bionetgen/bng-linux/Perl2/XML/TreePP.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/XML
2023-03-28T20:16:32,294   copying build/lib/bionetgen/bng-linux/Perl2/BNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-03-28T20:16:32,304   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/bin
2023-03-28T20:16:32,305   copying build/lib/bionetgen/bng-linux/bin/NFsim -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/bin
2023-03-28T20:16:32,397   copying build/lib/bionetgen/bng-linux/bin/sundials-config -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/bin
2023-03-28T20:16:32,401   copying build/lib/bionetgen/bng-linux/bin/run_network -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/bin
2023-03-28T20:16:32,501   copying build/lib/bionetgen/bng-linux/BNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux
2023-03-28T20:16:32,505   copying build/lib/bionetgen/bng-linux/VERSION -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux
2023-03-28T20:16:32,510   creating build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-03-28T20:16:32,512   copying build/lib/bionetgen/simulator/csimulator.py -> build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-03-28T20:16:32,516   copying build/lib/bionetgen/simulator/librrsimulator.py -> build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-03-28T20:16:32,520   copying build/lib/bionetgen/simulator/simulators.py -> build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-03-28T20:16:32,523   copying build/lib/bionetgen/simulator/bngsimulator.py -> build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-03-28T20:16:32,527   copying build/lib/bionetgen/simulator/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-03-28T20:16:32,532   creating build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-03-28T20:16:32,534   copying build/lib/bionetgen/modelapi/rulemod.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-03-28T20:16:32,538   copying build/lib/bionetgen/modelapi/bngfile.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-03-28T20:16:32,542   copying build/lib/bionetgen/modelapi/bngparser.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-03-28T20:16:32,547   copying build/lib/bionetgen/modelapi/structs.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-03-28T20:16:32,552   copying build/lib/bionetgen/modelapi/xmlparsers.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-03-28T20:16:32,557   copying build/lib/bionetgen/modelapi/runner.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-03-28T20:16:32,561   copying build/lib/bionetgen/modelapi/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-03-28T20:16:32,564   copying build/lib/bionetgen/modelapi/pattern.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-03-28T20:16:32,569   copying build/lib/bionetgen/modelapi/pattern_reader.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-03-28T20:16:32,573   copying build/lib/bionetgen/modelapi/blocks.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-03-28T20:16:32,579   copying build/lib/bionetgen/modelapi/model.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-03-28T20:16:32,584   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac
2023-03-28T20:16:32,589   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,591   copying build/lib/bionetgen/bng-mac/Perl2/RxnRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,602   copying build/lib/bionetgen/bng-mac/Perl2/CartesianProduct.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,607   copying build/lib/bionetgen/bng-mac/Perl2/RefineRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,613   copying build/lib/bionetgen/bng-mac/Perl2/BNGMessages.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,618   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:32,621   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/ContactMap.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:32,625   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/GML.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:32,633   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/Viz.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:32,641   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/StructureGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:32,646   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/analyze.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:32,652   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/VisOptParse.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:32,656   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/readGML.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:32,659   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/ProcessGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:32,664   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/NetworkGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:32,671   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/README -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:32,674   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/visualize.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:32,679   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/RINF.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-03-28T20:16:32,682   copying build/lib/bionetgen/bng-mac/Perl2/test_cartesianproduct.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,686   copying build/lib/bionetgen/bng-mac/Perl2/Population.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,689   copying build/lib/bionetgen/bng-mac/Perl2/HNauty.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,695   copying build/lib/bionetgen/bng-mac/Perl2/BNGOutput.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,707   copying build/lib/bionetgen/bng-mac/Perl2/Rxn.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,713   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,715   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_redirect.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,719   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_compartment.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,723   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/express_main.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,726   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/runBNG.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,730   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/diff_cdat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,734   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/bnglstat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,737   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/count_lines.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,742   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/count_blocks.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,746   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/MakeBin.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,752   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,756   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/group_size.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,760   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_sub.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,764   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_molorder.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,768   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/countdown.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,772   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/express.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-03-28T20:16:32,776   copying build/lib/bionetgen/bng-mac/Perl2/scan_var.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,780   copying build/lib/bionetgen/bng-mac/Perl2/Function.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,785   copying build/lib/bionetgen/bng-mac/Perl2/verify.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,789   copying build/lib/bionetgen/bng-mac/Perl2/Observable.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,794   copying build/lib/bionetgen/bng-mac/Perl2/SpeciesGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,804   copying build/lib/bionetgen/bng-mac/Perl2/RateLaw.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,812   copying build/lib/bionetgen/bng-mac/Perl2/XMLReader.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,816   copying build/lib/bionetgen/bng-mac/Perl2/BNGUtils.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,821   copying build/lib/bionetgen/bng-mac/Perl2/sample_vars_2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,827   copying build/lib/bionetgen/bng-mac/Perl2/BNGOptions.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,831   copying build/lib/bionetgen/bng-mac/Perl2/CompartmentList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,835   copying build/lib/bionetgen/bng-mac/Perl2/ComponentType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,840   copying build/lib/bionetgen/bng-mac/Perl2/RxnList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,844   copying build/lib/bionetgen/bng-mac/Perl2/Map.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,849   copying build/lib/bionetgen/bng-mac/Perl2/diff_net.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,854   copying build/lib/bionetgen/bng-mac/Perl2/MacroBNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,857   copying build/lib/bionetgen/bng-mac/Perl2/EnergyPattern.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,861   copying build/lib/bionetgen/bng-mac/Perl2/MacroBNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,870   copying build/lib/bionetgen/bng-mac/Perl2/SBMLMultiAux.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,875   copying build/lib/bionetgen/bng-mac/Perl2/Component.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,881   copying build/lib/bionetgen/bng-mac/Perl2/Param.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,886   copying build/lib/bionetgen/bng-mac/Perl2/BNGAction.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,895   copying build/lib/bionetgen/bng-mac/Perl2/Compartment.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,900   copying build/lib/bionetgen/bng-mac/Perl2/MoleculeTypesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,905   copying build/lib/bionetgen/bng-mac/Perl2/Console.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,910   copying build/lib/bionetgen/bng-mac/Perl2/PopulationList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,915   copying build/lib/bionetgen/bng-mac/Perl2/Species.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,920   copying build/lib/bionetgen/bng-mac/Perl2/ParamList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,926   copying build/lib/bionetgen/bng-mac/Perl2/MoleculeType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,931   copying build/lib/bionetgen/bng-mac/Perl2/SpeciesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,937   copying build/lib/bionetgen/bng-mac/Perl2/Expression.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,945   copying build/lib/bionetgen/bng-mac/Perl2/Molecule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,950   copying build/lib/bionetgen/bng-mac/Perl2/Cache.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,956   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-03-28T20:16:32,959   copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-03-28T20:16:32,963   copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-03-28T20:16:32,968   copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-03-28T20:16:32,972   copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-03-28T20:16:32,977   copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/ABC_example.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-03-28T20:16:32,981   copying build/lib/bionetgen/bng-mac/Perl2/ModelWrapper.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,985   copying build/lib/bionetgen/bng-mac/Perl2/auto_hpp.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:32,990   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/XML
2023-03-28T20:16:32,992   copying build/lib/bionetgen/bng-mac/Perl2/XML/TreePP.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/XML
2023-03-28T20:16:32,999   copying build/lib/bionetgen/bng-mac/Perl2/BNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-03-28T20:16:33,009   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/bin
2023-03-28T20:16:33,011   copying build/lib/bionetgen/bng-mac/bin/NFsim -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/bin
2023-03-28T20:16:33,094   copying build/lib/bionetgen/bng-mac/bin/sundials-config -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/bin
2023-03-28T20:16:33,098   copying build/lib/bionetgen/bng-mac/bin/run_network -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/bin
2023-03-28T20:16:33,213   copying build/lib/bionetgen/bng-mac/BNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac
2023-03-28T20:16:33,217   copying build/lib/bionetgen/bng-mac/VERSION -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac
2023-03-28T20:16:33,221   running install_egg_info
2023-03-28T20:16:33,292   Copying bionetgen.egg-info to build/bdist.linux-armv7l/wheel/bionetgen-0.8.0-py3.7.egg-info
2023-03-28T20:16:33,323   running install_scripts
2023-03-28T20:16:33,364   creating build/bdist.linux-armv7l/wheel/bionetgen-0.8.0.dist-info/WHEEL
2023-03-28T20:16:33,370   creating '/tmp/pip-wheel-j6om0g_3/bionetgen-0.8.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-03-28T20:16:33,375   adding 'bionetgen/__init__.py'
2023-03-28T20:16:33,381   adding 'bionetgen/main.py'
2023-03-28T20:16:33,385   adding 'bionetgen/assets/BNGVERSION'
2023-03-28T20:16:33,387   adding 'bionetgen/assets/VERSION'
2023-03-28T20:16:33,393   adding 'bionetgen/assets/bionetgen-temp.ipynb'
2023-03-28T20:16:33,399   adding 'bionetgen/assets/bionetgen.ipynb'
2023-03-28T20:16:33,401   adding 'bionetgen/assets/get_version_json.py'
2023-03-28T20:16:33,404   adding 'bionetgen/assets/ghapi.json'
2023-03-28T20:16:33,408   adding 'bionetgen/atomizer/__init__.py'
2023-03-28T20:16:33,412   adding 'bionetgen/atomizer/atomizeTool.py'
2023-03-28T20:16:33,415   adding 'bionetgen/atomizer/biogrid.py'
2023-03-28T20:16:33,433   adding 'bionetgen/atomizer/bngModel.py'
2023-03-28T20:16:33,438   adding 'bionetgen/atomizer/contactMap.py'
2023-03-28T20:16:33,444   adding 'bionetgen/atomizer/contextAnalyzer.py'
2023-03-28T20:16:33,465   adding 'bionetgen/atomizer/libsbml2bngl.py'
2023-03-28T20:16:33,470   adding 'bionetgen/atomizer/parseAnnotation.py'
2023-03-28T20:16:33,507   adding 'bionetgen/atomizer/sbml2bngl.py'
2023-03-28T20:16:33,516   adding 'bionetgen/atomizer/sbml2json.py'
2023-03-28T20:16:33,520   adding 'bionetgen/atomizer/sbmlTranslator.py'
2023-03-28T20:16:33,523   adding 'bionetgen/atomizer/atomizer/__init__.py'
2023-03-28T20:16:33,526   adding 'bionetgen/atomizer/atomizer/analyzeRDF.py'
2023-03-28T20:16:33,557   adding 'bionetgen/atomizer/atomizer/analyzeSBML.py'
2023-03-28T20:16:33,562   adding 'bionetgen/atomizer/atomizer/atomizationAux.py'
2023-03-28T20:16:33,565   adding 'bionetgen/atomizer/atomizer/atomizerUtils.py'
2023-03-28T20:16:33,569   adding 'bionetgen/atomizer/atomizer/detectOntology.py'
2023-03-28T20:16:33,583   adding 'bionetgen/atomizer/atomizer/moleculeCreation.py'
2023-03-28T20:16:33,605   adding 'bionetgen/atomizer/atomizer/resolveSCT.py'
2023-03-28T20:16:33,611   adding 'bionetgen/atomizer/merging/__init__.py'
2023-03-28T20:16:33,613   adding 'bionetgen/atomizer/merging/compareNamingConventions.py'
2023-03-28T20:16:33,619   adding 'bionetgen/atomizer/merging/namingDatabase.py'
2023-03-28T20:16:33,623   adding 'bionetgen/atomizer/rulifier/__init__.py'
2023-03-28T20:16:33,626   adding 'bionetgen/atomizer/rulifier/arial10.py'
2023-03-28T20:16:33,631   adding 'bionetgen/atomizer/rulifier/compareModels.py'
2023-03-28T20:16:33,639   adding 'bionetgen/atomizer/rulifier/componentGroups.py'
2023-03-28T20:16:33,643   adding 'bionetgen/atomizer/rulifier/parameterExtraction.py'
2023-03-28T20:16:33,650   adding 'bionetgen/atomizer/rulifier/postAnalysis.py'
2023-03-28T20:16:33,655   adding 'bionetgen/atomizer/rulifier/stateTransitionDiagram.py'
2023-03-28T20:16:33,660   adding 'bionetgen/atomizer/rulifier/stdgraph.py'
2023-03-28T20:16:33,664   adding 'bionetgen/atomizer/utils/__init__.py'
2023-03-28T20:16:33,668   adding 'bionetgen/atomizer/utils/annotationComparison.py'
2023-03-28T20:16:33,672   adding 'bionetgen/atomizer/utils/annotationDeletion.py'
2023-03-28T20:16:33,678   adding 'bionetgen/atomizer/utils/annotationExtender.py'
2023-03-28T20:16:33,683   adding 'bionetgen/atomizer/utils/annotationExtractor.py'
2023-03-28T20:16:33,686   adding 'bionetgen/atomizer/utils/annotationResolver.py'
2023-03-28T20:16:33,689   adding 'bionetgen/atomizer/utils/consoleCommands.py'
2023-03-28T20:16:33,692   adding 'bionetgen/atomizer/utils/extractAtomic.py'
2023-03-28T20:16:33,695   adding 'bionetgen/atomizer/utils/modelComparison.py'
2023-03-28T20:16:33,698   adding 'bionetgen/atomizer/utils/nameNormalizer.py'
2023-03-28T20:16:33,702   adding 'bionetgen/atomizer/utils/pathwaycommons.py'
2023-03-28T20:16:33,707   adding 'bionetgen/atomizer/utils/readBNGXML.py'
2023-03-28T20:16:33,715   adding 'bionetgen/atomizer/utils/smallStructures.py'
2023-03-28T20:16:33,722   adding 'bionetgen/atomizer/utils/structures.py'
2023-03-28T20:16:33,726   adding 'bionetgen/atomizer/utils/util.py'
2023-03-28T20:16:33,730   adding 'bionetgen/atomizer/writer/__init__.py'
2023-03-28T20:16:33,736   adding 'bionetgen/atomizer/writer/bnglWriter.py'
2023-03-28T20:16:33,741   adding 'bionetgen/bng-linux/BNG2.pl'
2023-03-28T20:16:33,744   adding 'bionetgen/bng-linux/VERSION'
2023-03-28T20:16:33,769   adding 'bionetgen/bng-linux/Perl2/BNGAction.pm'
2023-03-28T20:16:33,773   adding 'bionetgen/bng-linux/Perl2/BNGMessages.pm'
2023-03-28T20:16:33,797   adding 'bionetgen/bng-linux/Perl2/BNGModel.pm'
2023-03-28T20:16:33,801   adding 'bionetgen/bng-linux/Perl2/BNGOptions.pm'
2023-03-28T20:16:33,837   adding 'bionetgen/bng-linux/Perl2/BNGOutput.pm'
2023-03-28T20:16:33,845   adding 'bionetgen/bng-linux/Perl2/BNGUtils.pm'
2023-03-28T20:16:33,848   adding 'bionetgen/bng-linux/Perl2/Cache.pm'
2023-03-28T20:16:33,852   adding 'bionetgen/bng-linux/Perl2/CartesianProduct.pm'
2023-03-28T20:16:33,858   adding 'bionetgen/bng-linux/Perl2/Compartment.pm'
2023-03-28T20:16:33,861   adding 'bionetgen/bng-linux/Perl2/CompartmentList.pm'
2023-03-28T20:16:33,867   adding 'bionetgen/bng-linux/Perl2/Component.pm'
2023-03-28T20:16:33,871   adding 'bionetgen/bng-linux/Perl2/ComponentType.pm'
2023-03-28T20:16:33,874   adding 'bionetgen/bng-linux/Perl2/Console.pm'
2023-03-28T20:16:33,878   adding 'bionetgen/bng-linux/Perl2/EnergyPattern.pm'
2023-03-28T20:16:33,897   adding 'bionetgen/bng-linux/Perl2/Expression.pm'
2023-03-28T20:16:33,904   adding 'bionetgen/bng-linux/Perl2/Function.pm'
2023-03-28T20:16:33,913   adding 'bionetgen/bng-linux/Perl2/HNauty.pm'
2023-03-28T20:16:33,916   adding 'bionetgen/bng-linux/Perl2/MacroBNG2.pl'
2023-03-28T20:16:33,941   adding 'bionetgen/bng-linux/Perl2/MacroBNGModel.pm'
2023-03-28T20:16:33,946   adding 'bionetgen/bng-linux/Perl2/Map.pm'
2023-03-28T20:16:33,950   adding 'bionetgen/bng-linux/Perl2/ModelWrapper.pm'
2023-03-28T20:16:33,956   adding 'bionetgen/bng-linux/Perl2/Molecule.pm'
2023-03-28T20:16:33,961   adding 'bionetgen/bng-linux/Perl2/MoleculeType.pm'
2023-03-28T20:16:33,966   adding 'bionetgen/bng-linux/Perl2/MoleculeTypesList.pm'
2023-03-28T20:16:33,972   adding 'bionetgen/bng-linux/Perl2/Observable.pm'
2023-03-28T20:16:33,976   adding 'bionetgen/bng-linux/Perl2/Param.pm'
2023-03-28T20:16:33,984   adding 'bionetgen/bng-linux/Perl2/ParamList.pm'
2023-03-28T20:16:33,987   adding 'bionetgen/bng-linux/Perl2/Population.pm'
2023-03-28T20:16:33,990   adding 'bionetgen/bng-linux/Perl2/PopulationList.pm'
2023-03-28T20:16:34,002   adding 'bionetgen/bng-linux/Perl2/RateLaw.pm'
2023-03-28T20:16:34,010   adding 'bionetgen/bng-linux/Perl2/RefineRule.pm'
2023-03-28T20:16:34,015   adding 'bionetgen/bng-linux/Perl2/Rxn.pm'
2023-03-28T20:16:34,021   adding 'bionetgen/bng-linux/Perl2/RxnList.pm'
2023-03-28T20:16:34,066   adding 'bionetgen/bng-linux/Perl2/RxnRule.pm'
2023-03-28T20:16:34,074   adding 'bionetgen/bng-linux/Perl2/SBMLMultiAux.pm'
2023-03-28T20:16:34,077   adding 'bionetgen/bng-linux/Perl2/Species.pm'
2023-03-28T20:16:34,111   adding 'bionetgen/bng-linux/Perl2/SpeciesGraph.pm'
2023-03-28T20:16:34,120   adding 'bionetgen/bng-linux/Perl2/SpeciesList.pm'
2023-03-28T20:16:34,123   adding 'bionetgen/bng-linux/Perl2/XMLReader.pm'
2023-03-28T20:16:34,127   adding 'bionetgen/bng-linux/Perl2/auto_hpp.pl'
2023-03-28T20:16:34,132   adding 'bionetgen/bng-linux/Perl2/diff_net.pl'
2023-03-28T20:16:34,139   adding 'bionetgen/bng-linux/Perl2/sample_vars_2.pl'
2023-03-28T20:16:34,144   adding 'bionetgen/bng-linux/Perl2/scan_var.pl'
2023-03-28T20:16:34,146   adding 'bionetgen/bng-linux/Perl2/test_cartesianproduct.pl'
2023-03-28T20:16:34,150   adding 'bionetgen/bng-linux/Perl2/verify.pl'
2023-03-28T20:16:34,154   adding 'bionetgen/bng-linux/Perl2/Aux2/MakeBin.pl'
2023-03-28T20:16:34,157   adding 'bionetgen/bng-linux/Perl2/Aux2/bnglstat.pl'
2023-03-28T20:16:34,159   adding 'bionetgen/bng-linux/Perl2/Aux2/count_blocks.pl'
2023-03-28T20:16:34,162   adding 'bionetgen/bng-linux/Perl2/Aux2/count_lines.pl'
2023-03-28T20:16:34,164   adding 'bionetgen/bng-linux/Perl2/Aux2/countdown.pl'
2023-03-28T20:16:34,167   adding 'bionetgen/bng-linux/Perl2/Aux2/diff_cdat.pl'
2023-03-28T20:16:34,170   adding 'bionetgen/bng-linux/Perl2/Aux2/express.pl'
2023-03-28T20:16:34,173   adding 'bionetgen/bng-linux/Perl2/Aux2/express_main.pl'
2023-03-28T20:16:34,176   adding 'bionetgen/bng-linux/Perl2/Aux2/group_size.pl'
2023-03-28T20:16:34,179   adding 'bionetgen/bng-linux/Perl2/Aux2/runBNG.pl'
2023-03-28T20:16:34,181   adding 'bionetgen/bng-linux/Perl2/Aux2/test.pl'
2023-03-28T20:16:34,184   adding 'bionetgen/bng-linux/Perl2/Aux2/test_compartment.pl'
2023-03-28T20:16:34,186   adding 'bionetgen/bng-linux/Perl2/Aux2/test_molorder.pl'
2023-03-28T20:16:34,189   adding 'bionetgen/bng-linux/Perl2/Aux2/test_redirect.pl'
2023-03-28T20:16:34,191   adding 'bionetgen/bng-linux/Perl2/Aux2/test_sub.pl'
2023-03-28T20:16:34,195   adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/ABC_example.txt'
2023-03-28T20:16:34,199   adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Boolean2BNGL.pl'
2023-03-28T20:16:34,202   adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt'
2023-03-28T20:16:34,205   adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt'
2023-03-28T20:16:34,208   adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_v16.txt'
2023-03-28T20:16:34,212   adding 'bionetgen/bng-linux/Perl2/Visualization/ContactMap.pm'
2023-03-28T20:16:34,226   adding 'bionetgen/bng-linux/Perl2/Visualization/GML.pm'
2023-03-28T20:16:34,235   adding 'bionetgen/bng-linux/Perl2/Visualization/NetworkGraph.pm'
2023-03-28T20:16:34,241   adding 'bionetgen/bng-linux/Perl2/Visualization/ProcessGraph.pm'
2023-03-28T20:16:34,244   adding 'bionetgen/bng-linux/Perl2/Visualization/README'
2023-03-28T20:16:34,247   adding 'bionetgen/bng-linux/Perl2/Visualization/RINF.pm'
2023-03-28T20:16:34,253   adding 'bionetgen/bng-linux/Perl2/Visualization/StructureGraph.pm'
2023-03-28T20:16:34,256   adding 'bionetgen/bng-linux/Perl2/Visualization/VisOptParse.pm'
2023-03-28T20:16:34,272   adding 'bionetgen/bng-linux/Perl2/Visualization/Viz.pm'
2023-03-28T20:16:34,279   adding 'bionetgen/bng-linux/Perl2/Visualization/analyze.pl'
2023-03-28T20:16:34,283   adding 'bionetgen/bng-linux/Perl2/Visualization/readGML.pl'
2023-03-28T20:16:34,287   adding 'bionetgen/bng-linux/Perl2/Visualization/visualize.pl'
2023-03-28T20:16:34,299   adding 'bionetgen/bng-linux/Perl2/XML/TreePP.pm'
2023-03-28T20:16:35,143   adding 'bionetgen/bng-linux/bin/NFsim'
2023-03-28T20:16:35,886   adding 'bionetgen/bng-linux/bin/run_network'
2023-03-28T20:16:35,927   adding 'bionetgen/bng-linux/bin/sundials-config'
2023-03-28T20:16:35,932   adding 'bionetgen/bng-mac/BNG2.pl'
2023-03-28T20:16:35,935   adding 'bionetgen/bng-mac/VERSION'
2023-03-28T20:16:35,960   adding 'bionetgen/bng-mac/Perl2/BNGAction.pm'
2023-03-28T20:16:35,964   adding 'bionetgen/bng-mac/Perl2/BNGMessages.pm'
2023-03-28T20:16:35,988   adding 'bionetgen/bng-mac/Perl2/BNGModel.pm'
2023-03-28T20:16:35,993   adding 'bionetgen/bng-mac/Perl2/BNGOptions.pm'
2023-03-28T20:16:36,028   adding 'bionetgen/bng-mac/Perl2/BNGOutput.pm'
2023-03-28T20:16:36,036   adding 'bionetgen/bng-mac/Perl2/BNGUtils.pm'
2023-03-28T20:16:36,040   adding 'bionetgen/bng-mac/Perl2/Cache.pm'
2023-03-28T20:16:36,043   adding 'bionetgen/bng-mac/Perl2/CartesianProduct.pm'
2023-03-28T20:16:36,049   adding 'bionetgen/bng-mac/Perl2/Compartment.pm'
2023-03-28T20:16:36,053   adding 'bionetgen/bng-mac/Perl2/CompartmentList.pm'
2023-03-28T20:16:36,058   adding 'bionetgen/bng-mac/Perl2/Component.pm'
2023-03-28T20:16:36,062   adding 'bionetgen/bng-mac/Perl2/ComponentType.pm'
2023-03-28T20:16:36,066   adding 'bionetgen/bng-mac/Perl2/Console.pm'
2023-03-28T20:16:36,070   adding 'bionetgen/bng-mac/Perl2/EnergyPattern.pm'
2023-03-28T20:16:36,089   adding 'bionetgen/bng-mac/Perl2/Expression.pm'
2023-03-28T20:16:36,096   adding 'bionetgen/bng-mac/Perl2/Function.pm'
2023-03-28T20:16:36,105   adding 'bionetgen/bng-mac/Perl2/HNauty.pm'
2023-03-28T20:16:36,108   adding 'bionetgen/bng-mac/Perl2/MacroBNG2.pl'
2023-03-28T20:16:36,133   adding 'bionetgen/bng-mac/Perl2/MacroBNGModel.pm'
2023-03-28T20:16:36,139   adding 'bionetgen/bng-mac/Perl2/Map.pm'
2023-03-28T20:16:36,142   adding 'bionetgen/bng-mac/Perl2/ModelWrapper.pm'
2023-03-28T20:16:36,148   adding 'bionetgen/bng-mac/Perl2/Molecule.pm'
2023-03-28T20:16:36,153   adding 'bionetgen/bng-mac/Perl2/MoleculeType.pm'
2023-03-28T20:16:36,158   adding 'bionetgen/bng-mac/Perl2/MoleculeTypesList.pm'
2023-03-28T20:16:36,164   adding 'bionetgen/bng-mac/Perl2/Observable.pm'
2023-03-28T20:16:36,168   adding 'bionetgen/bng-mac/Perl2/Param.pm'
2023-03-28T20:16:36,175   adding 'bionetgen/bng-mac/Perl2/ParamList.pm'
2023-03-28T20:16:36,179   adding 'bionetgen/bng-mac/Perl2/Population.pm'
2023-03-28T20:16:36,182   adding 'bionetgen/bng-mac/Perl2/PopulationList.pm'
2023-03-28T20:16:36,193   adding 'bionetgen/bng-mac/Perl2/RateLaw.pm'
2023-03-28T20:16:36,202   adding 'bionetgen/bng-mac/Perl2/RefineRule.pm'
2023-03-28T20:16:36,207   adding 'bionetgen/bng-mac/Perl2/Rxn.pm'
2023-03-28T20:16:36,213   adding 'bionetgen/bng-mac/Perl2/RxnList.pm'
2023-03-28T20:16:36,257   adding 'bionetgen/bng-mac/Perl2/RxnRule.pm'
2023-03-28T20:16:36,265   adding 'bionetgen/bng-mac/Perl2/SBMLMultiAux.pm'
2023-03-28T20:16:36,269   adding 'bionetgen/bng-mac/Perl2/Species.pm'
2023-03-28T20:16:36,302   adding 'bionetgen/bng-mac/Perl2/SpeciesGraph.pm'
2023-03-28T20:16:36,312   adding 'bionetgen/bng-mac/Perl2/SpeciesList.pm'
2023-03-28T20:16:36,315   adding 'bionetgen/bng-mac/Perl2/XMLReader.pm'
2023-03-28T20:16:36,319   adding 'bionetgen/bng-mac/Perl2/auto_hpp.pl'
2023-03-28T20:16:36,323   adding 'bionetgen/bng-mac/Perl2/diff_net.pl'
2023-03-28T20:16:36,330   adding 'bionetgen/bng-mac/Perl2/sample_vars_2.pl'
2023-03-28T20:16:36,335   adding 'bionetgen/bng-mac/Perl2/scan_var.pl'
2023-03-28T20:16:36,338   adding 'bionetgen/bng-mac/Perl2/test_cartesianproduct.pl'
2023-03-28T20:16:36,341   adding 'bionetgen/bng-mac/Perl2/verify.pl'
2023-03-28T20:16:36,346   adding 'bionetgen/bng-mac/Perl2/Aux2/MakeBin.pl'
2023-03-28T20:16:36,348   adding 'bionetgen/bng-mac/Perl2/Aux2/bnglstat.pl'
2023-03-28T20:16:36,351   adding 'bionetgen/bng-mac/Perl2/Aux2/count_blocks.pl'
2023-03-28T20:16:36,354   adding 'bionetgen/bng-mac/Perl2/Aux2/count_lines.pl'
2023-03-28T20:16:36,356   adding 'bionetgen/bng-mac/Perl2/Aux2/countdown.pl'
2023-03-28T20:16:36,359   adding 'bionetgen/bng-mac/Perl2/Aux2/diff_cdat.pl'
2023-03-28T20:16:36,362   adding 'bionetgen/bng-mac/Perl2/Aux2/express.pl'
2023-03-28T20:16:36,365   adding 'bionetgen/bng-mac/Perl2/Aux2/express_main.pl'
2023-03-28T20:16:36,368   adding 'bionetgen/bng-mac/Perl2/Aux2/group_size.pl'
2023-03-28T20:16:36,371   adding 'bionetgen/bng-mac/Perl2/Aux2/runBNG.pl'
2023-03-28T20:16:36,373   adding 'bionetgen/bng-mac/Perl2/Aux2/test.pl'
2023-03-28T20:16:36,376   adding 'bionetgen/bng-mac/Perl2/Aux2/test_compartment.pl'
2023-03-28T20:16:36,379   adding 'bionetgen/bng-mac/Perl2/Aux2/test_molorder.pl'
2023-03-28T20:16:36,381   adding 'bionetgen/bng-mac/Perl2/Aux2/test_redirect.pl'
2023-03-28T20:16:36,383   adding 'bionetgen/bng-mac/Perl2/Aux2/test_sub.pl'
2023-03-28T20:16:36,387   adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/ABC_example.txt'
2023-03-28T20:16:36,391   adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Boolean2BNGL.pl'
2023-03-28T20:16:36,394   adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt'
2023-03-28T20:16:36,397   adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt'
2023-03-28T20:16:36,400   adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_v16.txt'
2023-03-28T20:16:36,404   adding 'bionetgen/bng-mac/Perl2/Visualization/ContactMap.pm'
2023-03-28T20:16:36,418   adding 'bionetgen/bng-mac/Perl2/Visualization/GML.pm'
2023-03-28T20:16:36,427   adding 'bionetgen/bng-mac/Perl2/Visualization/NetworkGraph.pm'
2023-03-28T20:16:36,433   adding 'bionetgen/bng-mac/Perl2/Visualization/ProcessGraph.pm'
2023-03-28T20:16:36,436   adding 'bionetgen/bng-mac/Perl2/Visualization/README'
2023-03-28T20:16:36,439   adding 'bionetgen/bng-mac/Perl2/Visualization/RINF.pm'
2023-03-28T20:16:36,444   adding 'bionetgen/bng-mac/Perl2/Visualization/StructureGraph.pm'
2023-03-28T20:16:36,448   adding 'bionetgen/bng-mac/Perl2/Visualization/VisOptParse.pm'
2023-03-28T20:16:36,463   adding 'bionetgen/bng-mac/Perl2/Visualization/Viz.pm'
2023-03-28T20:16:36,471   adding 'bionetgen/bng-mac/Perl2/Visualization/analyze.pl'
2023-03-28T20:16:36,474   adding 'bionetgen/bng-mac/Perl2/Visualization/readGML.pl'
2023-03-28T20:16:36,478   adding 'bionetgen/bng-mac/Perl2/Visualization/visualize.pl'
2023-03-28T20:16:36,491   adding 'bionetgen/bng-mac/Perl2/XML/TreePP.pm'
2023-03-28T20:16:37,134   adding 'bionetgen/bng-mac/bin/NFsim'
2023-03-28T20:16:37,803   adding 'bionetgen/bng-mac/bin/run_network'
2023-03-28T20:16:37,847   adding 'bionetgen/bng-mac/bin/sundials-config'
2023-03-28T20:16:37,852   adding 'bionetgen/bng-win/BNG2.pl'
2023-03-28T20:16:37,854   adding 'bionetgen/bng-win/VERSION'
2023-03-28T20:16:37,880   adding 'bionetgen/bng-win/Perl2/BNGAction.pm'
2023-03-28T20:16:37,884   adding 'bionetgen/bng-win/Perl2/BNGMessages.pm'
2023-03-28T20:16:37,907   adding 'bionetgen/bng-win/Perl2/BNGModel.pm'
2023-03-28T20:16:37,912   adding 'bionetgen/bng-win/Perl2/BNGOptions.pm'
2023-03-28T20:16:37,947   adding 'bionetgen/bng-win/Perl2/BNGOutput.pm'
2023-03-28T20:16:37,956   adding 'bionetgen/bng-win/Perl2/BNGUtils.pm'
2023-03-28T20:16:37,959   adding 'bionetgen/bng-win/Perl2/Cache.pm'
2023-03-28T20:16:37,962   adding 'bionetgen/bng-win/Perl2/CartesianProduct.pm'
2023-03-28T20:16:37,968   adding 'bionetgen/bng-win/Perl2/Compartment.pm'
2023-03-28T20:16:37,971   adding 'bionetgen/bng-win/Perl2/CompartmentList.pm'
2023-03-28T20:16:37,977   adding 'bionetgen/bng-win/Perl2/Component.pm'
2023-03-28T20:16:37,981   adding 'bionetgen/bng-win/Perl2/ComponentType.pm'
2023-03-28T20:16:37,984   adding 'bionetgen/bng-win/Perl2/Console.pm'
2023-03-28T20:16:37,988   adding 'bionetgen/bng-win/Perl2/EnergyPattern.pm'
2023-03-28T20:16:38,008   adding 'bionetgen/bng-win/Perl2/Expression.pm'
2023-03-28T20:16:38,014   adding 'bionetgen/bng-win/Perl2/Function.pm'
2023-03-28T20:16:38,023   adding 'bionetgen/bng-win/Perl2/HNauty.pm'
2023-03-28T20:16:38,026   adding 'bionetgen/bng-win/Perl2/MacroBNG2.pl'
2023-03-28T20:16:38,051   adding 'bionetgen/bng-win/Perl2/MacroBNGModel.pm'
2023-03-28T20:16:38,057   adding 'bionetgen/bng-win/Perl2/Map.pm'
2023-03-28T20:16:38,060   adding 'bionetgen/bng-win/Perl2/ModelWrapper.pm'
2023-03-28T20:16:38,066   adding 'bionetgen/bng-win/Perl2/Molecule.pm'
2023-03-28T20:16:38,072   adding 'bionetgen/bng-win/Perl2/MoleculeType.pm'
2023-03-28T20:16:38,076   adding 'bionetgen/bng-win/Perl2/MoleculeTypesList.pm'
2023-03-28T20:16:38,082   adding 'bionetgen/bng-win/Perl2/Observable.pm'
2023-03-28T20:16:38,086   adding 'bionetgen/bng-win/Perl2/Param.pm'
2023-03-28T20:16:38,093   adding 'bionetgen/bng-win/Perl2/ParamList.pm'
2023-03-28T20:16:38,097   adding 'bionetgen/bng-win/Perl2/Population.pm'
2023-03-28T20:16:38,100   adding 'bionetgen/bng-win/Perl2/PopulationList.pm'
2023-03-28T20:16:38,111   adding 'bionetgen/bng-win/Perl2/RateLaw.pm'
2023-03-28T20:16:38,120   adding 'bionetgen/bng-win/Perl2/RefineRule.pm'
2023-03-28T20:16:38,125   adding 'bionetgen/bng-win/Perl2/Rxn.pm'
2023-03-28T20:16:38,130   adding 'bionetgen/bng-win/Perl2/RxnList.pm'
2023-03-28T20:16:38,174   adding 'bionetgen/bng-win/Perl2/RxnRule.pm'
2023-03-28T20:16:38,182   adding 'bionetgen/bng-win/Perl2/SBMLMultiAux.pm'
2023-03-28T20:16:38,186   adding 'bionetgen/bng-win/Perl2/Species.pm'
2023-03-28T20:16:38,220   adding 'bionetgen/bng-win/Perl2/SpeciesGraph.pm'
2023-03-28T20:16:38,228   adding 'bionetgen/bng-win/Perl2/SpeciesList.pm'
2023-03-28T20:16:38,231   adding 'bionetgen/bng-win/Perl2/XMLReader.pm'
2023-03-28T20:16:38,235   adding 'bionetgen/bng-win/Perl2/auto_hpp.pl'
2023-03-28T20:16:38,240   adding 'bionetgen/bng-win/Perl2/diff_net.pl'
2023-03-28T20:16:38,246   adding 'bionetgen/bng-win/Perl2/sample_vars_2.pl'
2023-03-28T20:16:38,251   adding 'bionetgen/bng-win/Perl2/scan_var.pl'
2023-03-28T20:16:38,254   adding 'bionetgen/bng-win/Perl2/test_cartesianproduct.pl'
2023-03-28T20:16:38,257   adding 'bionetgen/bng-win/Perl2/verify.pl'
2023-03-28T20:16:38,261   adding 'bionetgen/bng-win/Perl2/Aux2/MakeBin.pl'
2023-03-28T20:16:38,264   adding 'bionetgen/bng-win/Perl2/Aux2/bnglstat.pl'
2023-03-28T20:16:38,266   adding 'bionetgen/bng-win/Perl2/Aux2/count_blocks.pl'
2023-03-28T20:16:38,269   adding 'bionetgen/bng-win/Perl2/Aux2/count_lines.pl'
2023-03-28T20:16:38,271   adding 'bionetgen/bng-win/Perl2/Aux2/countdown.pl'
2023-03-28T20:16:38,274   adding 'bionetgen/bng-win/Perl2/Aux2/diff_cdat.pl'
2023-03-28T20:16:38,277   adding 'bionetgen/bng-win/Perl2/Aux2/express.pl'
2023-03-28T20:16:38,280   adding 'bionetgen/bng-win/Perl2/Aux2/express_main.pl'
2023-03-28T20:16:38,282   adding 'bionetgen/bng-win/Perl2/Aux2/group_size.pl'
2023-03-28T20:16:38,285   adding 'bionetgen/bng-win/Perl2/Aux2/runBNG.pl'
2023-03-28T20:16:38,288   adding 'bionetgen/bng-win/Perl2/Aux2/test.pl'
2023-03-28T20:16:38,290   adding 'bionetgen/bng-win/Perl2/Aux2/test_compartment.pl'
2023-03-28T20:16:38,292   adding 'bionetgen/bng-win/Perl2/Aux2/test_molorder.pl'
2023-03-28T20:16:38,295   adding 'bionetgen/bng-win/Perl2/Aux2/test_redirect.pl'
2023-03-28T20:16:38,297   adding 'bionetgen/bng-win/Perl2/Aux2/test_sub.pl'
2023-03-28T20:16:38,301   adding 'bionetgen/bng-win/Perl2/Boolean2BNGL/ABC_example.txt'
2023-03-28T20:16:38,304   adding 'bionetgen/bng-win/Perl2/Boolean2BNGL/Boolean2BNGL.pl'
2023-03-28T20:16:38,307   adding 'bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt'
2023-03-28T20:16:38,310   adding 'bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt'
2023-03-28T20:16:38,313   adding 'bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_v16.txt'
2023-03-28T20:16:38,317   adding 'bionetgen/bng-win/Perl2/Visualization/ContactMap.pm'
2023-03-28T20:16:38,331   adding 'bionetgen/bng-win/Perl2/Visualization/GML.pm'
2023-03-28T20:16:38,340   adding 'bionetgen/bng-win/Perl2/Visualization/NetworkGraph.pm'
2023-03-28T20:16:38,346   adding 'bionetgen/bng-win/Perl2/Visualization/ProcessGraph.pm'
2023-03-28T20:16:38,349   adding 'bionetgen/bng-win/Perl2/Visualization/README'
2023-03-28T20:16:38,352   adding 'bionetgen/bng-win/Perl2/Visualization/RINF.pm'
2023-03-28T20:16:38,357   adding 'bionetgen/bng-win/Perl2/Visualization/StructureGraph.pm'
2023-03-28T20:16:38,361   adding 'bionetgen/bng-win/Perl2/Visualization/VisOptParse.pm'
2023-03-28T20:16:38,376   adding 'bionetgen/bng-win/Perl2/Visualization/Viz.pm'
2023-03-28T20:16:38,384   adding 'bionetgen/bng-win/Perl2/Visualization/analyze.pl'
2023-03-28T20:16:38,388   adding 'bionetgen/bng-win/Perl2/Visualization/readGML.pl'
2023-03-28T20:16:38,392   adding 'bionetgen/bng-win/Perl2/Visualization/visualize.pl'
2023-03-28T20:16:38,405   adding 'bionetgen/bng-win/Perl2/XML/TreePP.pm'
2023-03-28T20:16:39,190   adding 'bionetgen/bng-win/bin/NFsim.exe'
2023-03-28T20:16:39,259   adding 'bionetgen/bng-win/bin/cyggcc_s-seh-1.dll'
2023-03-28T20:16:39,733   adding 'bionetgen/bng-win/bin/cygstdc++-6.dll'
2023-03-28T20:16:41,122   adding 'bionetgen/bng-win/bin/cygwin1.dll'
2023-03-28T20:16:41,225   adding 'bionetgen/bng-win/bin/cygz.dll'
2023-03-28T20:16:41,493   adding 'bionetgen/bng-win/bin/libgcc_s_dw2-1.dll'
2023-03-28T20:16:41,975   adding 'bionetgen/bng-win/bin/libstdc++-6.dll'
2023-03-28T20:16:45,760   adding 'bionetgen/bng-win/bin/run_network.exe'
2023-03-28T20:16:46,019   adding 'bionetgen/bng-win/bin/sundials-config'
2023-03-28T20:16:46,023   adding 'bionetgen/core/__init__.py'
2023-03-28T20:16:46,026   adding 'bionetgen/core/defaults.py'
2023-03-28T20:16:46,030   adding 'bionetgen/core/exc.py'
2023-03-28T20:16:46,035   adding 'bionetgen/core/main.py'
2023-03-28T20:16:46,038   adding 'bionetgen/core/notebook.py'
2023-03-28T20:16:46,041   adding 'bionetgen/core/version.py'
2023-03-28T20:16:46,046   adding 'bionetgen/core/tools/__init__.py'
2023-03-28T20:16:46,050   adding 'bionetgen/core/tools/cli.py'
2023-03-28T20:16:46,058   adding 'bionetgen/core/tools/gdiff.py'
2023-03-28T20:16:46,063   adding 'bionetgen/core/tools/info.py'
2023-03-28T20:16:46,066   adding 'bionetgen/core/tools/plot.py'
2023-03-28T20:16:46,071   adding 'bionetgen/core/tools/result.py'
2023-03-28T20:16:46,075   adding 'bionetgen/core/tools/visualize.py'
2023-03-28T20:16:46,080   adding 'bionetgen/core/utils/__init__.py'
2023-03-28T20:16:46,084   adding 'bionetgen/core/utils/logging.py'
2023-03-28T20:16:46,090   adding 'bionetgen/core/utils/utils.py'
2023-03-28T20:16:46,094   adding 'bionetgen/modelapi/__init__.py'
2023-03-28T20:16:46,101   adding 'bionetgen/modelapi/blocks.py'
2023-03-28T20:16:46,106   adding 'bionetgen/modelapi/bngfile.py'
2023-03-28T20:16:46,111   adding 'bionetgen/modelapi/bngparser.py'
2023-03-28T20:16:46,117   adding 'bionetgen/modelapi/model.py'
2023-03-28T20:16:46,125   adding 'bionetgen/modelapi/pattern.py'
2023-03-28T20:16:46,130   adding 'bionetgen/modelapi/pattern_reader.py'
2023-03-28T20:16:46,133   adding 'bionetgen/modelapi/rulemod.py'
2023-03-28T20:16:46,136   adding 'bionetgen/modelapi/runner.py'
2023-03-28T20:16:46,141   adding 'bionetgen/modelapi/structs.py'
2023-03-28T20:16:46,149   adding 'bionetgen/modelapi/xmlparsers.py'
2023-03-28T20:16:46,153   adding 'bionetgen/network/__init__.py'
2023-03-28T20:16:46,158   adding 'bionetgen/network/blocks.py'
2023-03-28T20:16:46,161   adding 'bionetgen/network/network.py'
2023-03-28T20:16:46,165   adding 'bionetgen/network/networkparser.py'
2023-03-28T20:16:46,169   adding 'bionetgen/network/structs.py'
2023-03-28T20:16:46,173   adding 'bionetgen/simulator/__init__.py'
2023-03-28T20:16:46,175   adding 'bionetgen/simulator/bngsimulator.py'
2023-03-28T20:16:46,180   adding 'bionetgen/simulator/csimulator.py'
2023-03-28T20:16:46,183   adding 'bionetgen/simulator/librrsimulator.py'
2023-03-28T20:16:46,186   adding 'bionetgen/simulator/simulators.py'
2023-03-28T20:16:46,191   adding 'bionetgen-0.8.0.dist-info/LICENSE'
2023-03-28T20:16:46,194   adding 'bionetgen-0.8.0.dist-info/METADATA'
2023-03-28T20:16:46,196   adding 'bionetgen-0.8.0.dist-info/WHEEL'
2023-03-28T20:16:46,198   adding 'bionetgen-0.8.0.dist-info/entry_points.txt'
2023-03-28T20:16:46,200   adding 'bionetgen-0.8.0.dist-info/top_level.txt'
2023-03-28T20:16:46,212   adding 'bionetgen-0.8.0.dist-info/RECORD'
2023-03-28T20:16:46,572   removing build/bdist.linux-armv7l/wheel
2023-03-28T20:16:46,965   Building wheel for bionetgen (setup.py): finished with status 'done'
2023-03-28T20:16:47,270   Created wheel for bionetgen: filename=bionetgen-0.8.0-py3-none-any.whl size=10039692 sha256=1892489ca2c73760c8a88d4651fefe6bfa9f0d2174d8376cfee881268b0b4d3d
2023-03-28T20:16:47,272   Stored in directory: /tmp/pip-ephem-wheel-cache-p8y59zlp/wheels/2a/4a/02/e6e5a21b98767dca11dec60d11a8c6360ad5cb743bb7bfb223
2023-03-28T20:16:47,337 Successfully built bionetgen
2023-03-28T20:16:48,084 Removed build tracker: '/tmp/pip-build-tracker-eci5kz_s'