2023-03-29T09:58:59,237 Created temporary directory: /tmp/pip-ephem-wheel-cache-wgj2s69b 2023-03-29T09:58:59,240 Created temporary directory: /tmp/pip-build-tracker-a40_1isc 2023-03-29T09:58:59,241 Initialized build tracking at /tmp/pip-build-tracker-a40_1isc 2023-03-29T09:58:59,241 Created build tracker: /tmp/pip-build-tracker-a40_1isc 2023-03-29T09:58:59,241 Entered build tracker: /tmp/pip-build-tracker-a40_1isc 2023-03-29T09:58:59,241 Created temporary directory: /tmp/pip-wheel-2a86427c 2023-03-29T09:58:59,246 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-03-29T09:58:59,249 Created temporary directory: /tmp/pip-ephem-wheel-cache-f5fzmcin 2023-03-29T09:58:59,278 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-03-29T09:58:59,281 2 location(s) to search for versions of camotss: 2023-03-29T09:58:59,281 * https://pypi.org/simple/camotss/ 2023-03-29T09:58:59,281 * https://www.piwheels.org/simple/camotss/ 2023-03-29T09:58:59,282 Fetching project page and analyzing links: https://pypi.org/simple/camotss/ 2023-03-29T09:58:59,282 Getting page https://pypi.org/simple/camotss/ 2023-03-29T09:58:59,283 Found index url https://pypi.org/simple 2023-03-29T09:58:59,335 Fetched page https://pypi.org/simple/camotss/ as application/vnd.pypi.simple.v1+json 2023-03-29T09:58:59,337 Found link https://files.pythonhosted.org/packages/0b/8b/b9fb075cc243dc251773b1cf76aef9792786bbefa49005d344f3518abe60/CamoTSS-0.0.5.tar.gz (from https://pypi.org/simple/camotss/) (requires-python:>=3.5), version: 0.0.5 2023-03-29T09:58:59,338 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/33/a6/bbcc1a258a338f0ba390098cd0a1ba129f08b4fc031e3e664efc3573b2ed/CamoTSS-0.0.6-py3.7.egg (from https://pypi.org/simple/camotss/) (requires-python:>=3.5) 2023-03-29T09:58:59,338 Found link https://files.pythonhosted.org/packages/49/2e/3f9b842e019acd4ab4732d7e256e4a769033ec35300c88294368757b4bba/CamoTSS-0.0.6.tar.gz (from https://pypi.org/simple/camotss/) (requires-python:>=3.5), version: 0.0.6 2023-03-29T09:58:59,339 Found link https://files.pythonhosted.org/packages/ff/0c/d5f6365340c636a739e964b4f9e5c89ec7fcf127692cab727e068bf781a8/CamoTSS-0.0.7.tar.gz (from https://pypi.org/simple/camotss/) (requires-python:>=3.5), version: 0.0.7 2023-03-29T09:58:59,340 Found link https://files.pythonhosted.org/packages/48/03/d2cefdf14bbdd445664d9132a5d11a86dc34fc3f51913bbfef8cefece884/CamoTSS-0.0.8.tar.gz (from https://pypi.org/simple/camotss/) (requires-python:>=3.5), version: 0.0.8 2023-03-29T09:58:59,340 Found link https://files.pythonhosted.org/packages/4c/f4/caa33146b7180d344e6e55eb1a8e32f779ac711086115a8b659f7cd5e108/CamoTSS-0.0.9.tar.gz (from https://pypi.org/simple/camotss/) (requires-python:>=3.5), version: 0.0.9 2023-03-29T09:58:59,341 Fetching project page and analyzing links: https://www.piwheels.org/simple/camotss/ 2023-03-29T09:58:59,341 Getting page https://www.piwheels.org/simple/camotss/ 2023-03-29T09:58:59,342 Found index url https://www.piwheels.org/simple 2023-03-29T09:58:59,513 Fetched page https://www.piwheels.org/simple/camotss/ as text/html 2023-03-29T09:58:59,515 Skipping link: No binaries permitted for camotss: https://www.piwheels.org/simple/camotss/CamoTSS-0.0.5-py3-none-any.whl#sha256=718fa44d80f81f3bc6eef5839e4be2b240f3308e1461a16c438dd3a470c4778c (from https://www.piwheels.org/simple/camotss/) (requires-python:>=3.5) 2023-03-29T09:58:59,515 Skipping link: not a file: https://www.piwheels.org/simple/camotss/ 2023-03-29T09:58:59,516 Skipping link: not a file: https://pypi.org/simple/camotss/ 2023-03-29T09:58:59,543 Given no hashes to check 1 links for project 'camotss': discarding no candidates 2023-03-29T09:58:59,570 Collecting camotss==0.0.9 2023-03-29T09:58:59,573 Created temporary directory: /tmp/pip-unpack-yw3q1h7u 2023-03-29T09:58:59,638 Downloading CamoTSS-0.0.9.tar.gz (8.0 MB) 2023-03-29T09:59:01,814 Added camotss==0.0.9 from https://files.pythonhosted.org/packages/4c/f4/caa33146b7180d344e6e55eb1a8e32f779ac711086115a8b659f7cd5e108/CamoTSS-0.0.9.tar.gz to build tracker '/tmp/pip-build-tracker-a40_1isc' 2023-03-29T09:59:01,815 Running setup.py (path:/tmp/pip-wheel-2a86427c/camotss_e4b1d89a76f84fab8103cb93a0a7fc2f/setup.py) egg_info for package camotss 2023-03-29T09:59:01,816 Created temporary directory: /tmp/pip-pip-egg-info-n4jf0r2l 2023-03-29T09:59:01,816 Preparing metadata (setup.py): started 2023-03-29T09:59:01,817 Running command python setup.py egg_info 2023-03-29T09:59:02,399 error in CamoTSS setup command: 'install_requires' must be a string or list of strings containing valid project/version requirement specifiers; Expected end or semicolon (after version specifier) 2023-03-29T09:59:02,400 pyranges>=0.0.115scanpy>=1.5 2023-03-29T09:59:02,400 ~~~~~~~~~^ 2023-03-29T09:59:02,456 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-03-29T09:59:02,473 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-03-29T09:59:02,473 exec(compile('"'"''"'"''"'"' 2023-03-29T09:59:02,473 # This is -- a caller that pip uses to run setup.py 2023-03-29T09:59:02,473 # 2023-03-29T09:59:02,473 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-03-29T09:59:02,473 # import from `distutils.core` to work with newer packaging standards. 2023-03-29T09:59:02,473 # - It provides a clear error message when setuptools is not installed. 2023-03-29T09:59:02,473 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-03-29T09:59:02,473 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-03-29T09:59:02,473 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-03-29T09:59:02,473 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-03-29T09:59:02,473 import os, sys, tokenize 2023-03-29T09:59:02,473 2023-03-29T09:59:02,473 try: 2023-03-29T09:59:02,473 import setuptools 2023-03-29T09:59:02,473 except ImportError as error: 2023-03-29T09:59:02,473 print( 2023-03-29T09:59:02,473 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-03-29T09:59:02,473 "the build environment.", 2023-03-29T09:59:02,473 file=sys.stderr, 2023-03-29T09:59:02,473 ) 2023-03-29T09:59:02,473 sys.exit(1) 2023-03-29T09:59:02,473 2023-03-29T09:59:02,473 __file__ = %r 2023-03-29T09:59:02,473 sys.argv[0] = __file__ 2023-03-29T09:59:02,473 2023-03-29T09:59:02,473 if os.path.exists(__file__): 2023-03-29T09:59:02,473 filename = __file__ 2023-03-29T09:59:02,473 with tokenize.open(__file__) as f: 2023-03-29T09:59:02,473 setup_py_code = f.read() 2023-03-29T09:59:02,473 else: 2023-03-29T09:59:02,473 filename = "" 2023-03-29T09:59:02,473 setup_py_code = "from setuptools import setup; setup()" 2023-03-29T09:59:02,473 2023-03-29T09:59:02,473 exec(compile(setup_py_code, filename, "exec")) 2023-03-29T09:59:02,473 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-2a86427c/camotss_e4b1d89a76f84fab8103cb93a0a7fc2f/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-n4jf0r2l[/] 2023-03-29T09:59:02,473 [bold magenta]cwd[/]: /tmp/pip-wheel-2a86427c/camotss_e4b1d89a76f84fab8103cb93a0a7fc2f/ 2023-03-29T09:59:02,474 Preparing metadata (setup.py): finished with status 'error' 2023-03-29T09:59:02,475 ERROR: [present-rich] metadata generation failed 2023-03-29T09:59:02,481 Exception information: 2023-03-29T09:59:02,481 Traceback (most recent call last): 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-03-29T09:59:02,481 call_subprocess( 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-03-29T09:59:02,481 raise error 2023-03-29T09:59:02,481 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-03-29T09:59:02,481 2023-03-29T09:59:02,481 The above exception was the direct cause of the following exception: 2023-03-29T09:59:02,481 2023-03-29T09:59:02,481 Traceback (most recent call last): 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2023-03-29T09:59:02,481 status = run_func(*args) 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2023-03-29T09:59:02,481 return func(self, options, args) 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 170, in run 2023-03-29T09:59:02,481 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-03-29T09:59:02,481 result = self._result = resolver.resolve( 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 481, in resolve 2023-03-29T09:59:02,481 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 348, in resolve 2023-03-29T09:59:02,481 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 172, in _add_to_criteria 2023-03-29T09:59:02,481 if not criterion.candidates: 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/structs.py", line 151, in __bool__ 2023-03-29T09:59:02,481 return bool(self._sequence) 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-03-29T09:59:02,481 return any(self) 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-03-29T09:59:02,481 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-03-29T09:59:02,481 candidate = func() 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-03-29T09:59:02,481 self._link_candidate_cache[link] = LinkCandidate( 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 297, in __init__ 2023-03-29T09:59:02,481 super().__init__( 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 162, in __init__ 2023-03-29T09:59:02,481 self.dist = self._prepare() 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 231, in _prepare 2023-03-29T09:59:02,481 dist = self._prepare_distribution() 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 308, in _prepare_distribution 2023-03-29T09:59:02,481 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 491, in prepare_linked_requirement 2023-03-29T09:59:02,481 return self._prepare_linked_requirement(req, parallel_builds) 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 577, in _prepare_linked_requirement 2023-03-29T09:59:02,481 dist = _get_prepared_distribution( 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-03-29T09:59:02,481 abstract_dist.prepare_distribution_metadata( 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-03-29T09:59:02,481 self.req.prepare_metadata() 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/req/req_install.py", line 545, in prepare_metadata 2023-03-29T09:59:02,481 self.metadata_directory = generate_metadata_legacy( 2023-03-29T09:59:02,481 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-03-29T09:59:02,481 raise MetadataGenerationFailed(package_details=details) from error 2023-03-29T09:59:02,481 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-03-29T09:59:02,492 Removed camotss==0.0.9 from https://files.pythonhosted.org/packages/4c/f4/caa33146b7180d344e6e55eb1a8e32f779ac711086115a8b659f7cd5e108/CamoTSS-0.0.9.tar.gz from build tracker '/tmp/pip-build-tracker-a40_1isc' 2023-03-29T09:59:02,492 Removed build tracker: '/tmp/pip-build-tracker-a40_1isc'