2023-03-29T20:13:02,103 Created temporary directory: /tmp/pip-ephem-wheel-cache-iaswahvp
2023-03-29T20:13:02,108 Created temporary directory: /tmp/pip-build-tracker-1niffz0b
2023-03-29T20:13:02,109 Initialized build tracking at /tmp/pip-build-tracker-1niffz0b
2023-03-29T20:13:02,110 Created build tracker: /tmp/pip-build-tracker-1niffz0b
2023-03-29T20:13:02,110 Entered build tracker: /tmp/pip-build-tracker-1niffz0b
2023-03-29T20:13:02,111 Created temporary directory: /tmp/pip-wheel-s7n6h02q
2023-03-29T20:13:02,121 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-29T20:13:02,127 Created temporary directory: /tmp/pip-ephem-wheel-cache-i5_9ea5c
2023-03-29T20:13:02,180 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-29T20:13:02,187 2 location(s) to search for versions of mhcnuggets:
2023-03-29T20:13:02,187 * https://pypi.org/simple/mhcnuggets/
2023-03-29T20:13:02,187 * https://www.piwheels.org/simple/mhcnuggets/
2023-03-29T20:13:02,188 Fetching project page and analyzing links: https://pypi.org/simple/mhcnuggets/
2023-03-29T20:13:02,189 Getting page https://pypi.org/simple/mhcnuggets/
2023-03-29T20:13:02,192 Found index url https://pypi.org/simple
2023-03-29T20:13:02,423 Fetched page https://pypi.org/simple/mhcnuggets/ as application/vnd.pypi.simple.v1+json
2023-03-29T20:13:02,431   Found link https://files.pythonhosted.org/packages/f7/89/8217a284d0640b480f3cc6aef66a74e5542283ca782e617e492160ce6f09/mhcnuggets-2.0.tar.gz (from https://pypi.org/simple/mhcnuggets/), version: 2.0
2023-03-29T20:13:02,432   Found link https://files.pythonhosted.org/packages/8a/12/365cd5aa8fa83da2df98205c49fe202776b465bf72e8287a43a42474446a/mhcnuggets-2.1.tar.gz (from https://pypi.org/simple/mhcnuggets/), version: 2.1
2023-03-29T20:13:02,432   Found link https://files.pythonhosted.org/packages/a8/c2/2a028e83036ccab2eb0a15daa65fd33605455945f83f97640d718e2b6763/mhcnuggets-2.2.tar.gz (from https://pypi.org/simple/mhcnuggets/), version: 2.2
2023-03-29T20:13:02,433   Skipping link: No binaries permitted for mhcnuggets: https://files.pythonhosted.org/packages/bd/08/18496b8c327db8fe8a50f93eb6fd69295807453fb74776149bf717605cbc/mhcnuggets-2.3.1-py2-none-any.whl (from https://pypi.org/simple/mhcnuggets/)
2023-03-29T20:13:02,434   Found link https://files.pythonhosted.org/packages/4f/f6/c1c30d77eee8e94cd007311aef4f08662a4c323d6e829a726d0d3452e64f/mhcnuggets-2.3.1.tar.gz (from https://pypi.org/simple/mhcnuggets/), version: 2.3.1
2023-03-29T20:13:02,434   Found link https://files.pythonhosted.org/packages/21/ca/f2bd3c9e3bdbbe8230a6975383d0712d924becddd90cfb8e9b256959726c/mhcnuggets-2.3.2.tar.gz (from https://pypi.org/simple/mhcnuggets/), version: 2.3.2
2023-03-29T20:13:02,435   Skipping link: No binaries permitted for mhcnuggets: https://files.pythonhosted.org/packages/53/66/c5364496ac243447151aca60b15e01c2e6612847318eae2bdb3cff82edcf/mhcnuggets-2.3.3-py2-none-any.whl (from https://pypi.org/simple/mhcnuggets/)
2023-03-29T20:13:02,436   Found link https://files.pythonhosted.org/packages/16/36/c225da3dfae3417591a2cf06ee0d4fb2d3e42161a26a18ce99e4ba378103/mhcnuggets-2.3.3.tar.gz (from https://pypi.org/simple/mhcnuggets/), version: 2.3.3
2023-03-29T20:13:02,436   Skipping link: No binaries permitted for mhcnuggets: https://files.pythonhosted.org/packages/9b/a9/e16cef819fb69236e0c8adf78c5516cff10b309158cc83bd7836d5d6a2b6/mhcnuggets-2.4.0-py3-none-any.whl (from https://pypi.org/simple/mhcnuggets/)
2023-03-29T20:13:02,437   Found link https://files.pythonhosted.org/packages/c9/48/980b9e3633764aadd898f3fac87816d76a1b394327a6e39bf180cd91a590/mhcnuggets-2.4.0.tar.gz (from https://pypi.org/simple/mhcnuggets/), version: 2.4.0
2023-03-29T20:13:02,437   Skipping link: No binaries permitted for mhcnuggets: https://files.pythonhosted.org/packages/6d/08/87a8fbffacc56a795da3ce2acdf1db87010f4b14b3822b9c82a08f780edd/mhcnuggets-2.4.1-py2.py3-none-any.whl (from https://pypi.org/simple/mhcnuggets/)
2023-03-29T20:13:02,438   Found link https://files.pythonhosted.org/packages/07/5f/94d4d24336f63435eddc924388bb7eac13bbefd55d1ac9b944333a7eabeb/mhcnuggets-2.4.1.tar.gz (from https://pypi.org/simple/mhcnuggets/), version: 2.4.1
2023-03-29T20:13:02,439 Fetching project page and analyzing links: https://www.piwheels.org/simple/mhcnuggets/
2023-03-29T20:13:02,439 Getting page https://www.piwheels.org/simple/mhcnuggets/
2023-03-29T20:13:02,442 Found index url https://www.piwheels.org/simple
2023-03-29T20:13:02,653 Fetched page https://www.piwheels.org/simple/mhcnuggets/ as text/html
2023-03-29T20:13:02,660   Skipping link: No binaries permitted for mhcnuggets: https://www.piwheels.org/simple/mhcnuggets/mhcnuggets-2.4.0-py3-none-any.whl#sha256=05236c7695423f5f7d7216291239e8a4145ad7ac717e34d9668630d85d19b93f (from https://www.piwheels.org/simple/mhcnuggets/)
2023-03-29T20:13:02,660   Skipping link: No binaries permitted for mhcnuggets: https://www.piwheels.org/simple/mhcnuggets/mhcnuggets-2.3.3-py3-none-any.whl#sha256=a73c59dbea13eb9bd24e3b34d6c92875ecd11fa6053424ef13b67dd79a5095ba (from https://www.piwheels.org/simple/mhcnuggets/)
2023-03-29T20:13:02,661   Skipping link: No binaries permitted for mhcnuggets: https://www.piwheels.org/simple/mhcnuggets/mhcnuggets-2.3.2-py3-none-any.whl#sha256=8722569d45d3a61b9baff32da7ccf4f3c4c95f943916633405b06365d315409e (from https://www.piwheels.org/simple/mhcnuggets/)
2023-03-29T20:13:02,661   Skipping link: No binaries permitted for mhcnuggets: https://www.piwheels.org/simple/mhcnuggets/mhcnuggets-2.3.1-py3-none-any.whl#sha256=15461548ed528ef1aa83a7e168a141e45517ce6b7b69a484fddac35c8b6729b9 (from https://www.piwheels.org/simple/mhcnuggets/)
2023-03-29T20:13:02,662   Skipping link: No binaries permitted for mhcnuggets: https://www.piwheels.org/simple/mhcnuggets/mhcnuggets-2.2-py3-none-any.whl#sha256=68852dea79c1f46d8e46af1b2bb1552f510d9c222933decb21029e335a729a92 (from https://www.piwheels.org/simple/mhcnuggets/)
2023-03-29T20:13:02,662   Skipping link: No binaries permitted for mhcnuggets: https://www.piwheels.org/simple/mhcnuggets/mhcnuggets-2.1-py3-none-any.whl#sha256=d290683f6de94e14dc28f53a1a73c0533623a094135306f6707e1d9523a8e9dc (from https://www.piwheels.org/simple/mhcnuggets/)
2023-03-29T20:13:02,663   Skipping link: No binaries permitted for mhcnuggets: https://www.piwheels.org/simple/mhcnuggets/mhcnuggets-2.0-py3-none-any.whl#sha256=53e44e69231d6fe3d543547c08944591dae99d8e64ef70cbb42f5d744a520159 (from https://www.piwheels.org/simple/mhcnuggets/)
2023-03-29T20:13:02,663 Skipping link: not a file: https://www.piwheels.org/simple/mhcnuggets/
2023-03-29T20:13:02,664 Skipping link: not a file: https://pypi.org/simple/mhcnuggets/
2023-03-29T20:13:02,699 Given no hashes to check 1 links for project 'mhcnuggets': discarding no candidates
2023-03-29T20:13:02,729 Collecting mhcnuggets==2.4.1
2023-03-29T20:13:02,733   Created temporary directory: /tmp/pip-unpack-r5xvkul5
2023-03-29T20:13:03,301   Downloading mhcnuggets-2.4.1.tar.gz (107.6 MB)
2023-03-29T20:14:22,445   Added mhcnuggets==2.4.1 from https://files.pythonhosted.org/packages/07/5f/94d4d24336f63435eddc924388bb7eac13bbefd55d1ac9b944333a7eabeb/mhcnuggets-2.4.1.tar.gz to build tracker '/tmp/pip-build-tracker-1niffz0b'
2023-03-29T20:14:22,451   Running setup.py (path:/tmp/pip-wheel-s7n6h02q/mhcnuggets_e6135d24f3124d48ba64a643cb6a93bf/setup.py) egg_info for package mhcnuggets
2023-03-29T20:14:22,452   Created temporary directory: /tmp/pip-pip-egg-info-jo4fwd7v
2023-03-29T20:14:22,453   Preparing metadata (setup.py): started
2023-03-29T20:14:22,455   Running command python setup.py egg_info
2023-03-29T20:14:24,183   running egg_info
2023-03-29T20:14:24,186   creating /tmp/pip-pip-egg-info-jo4fwd7v/mhcnuggets.egg-info
2023-03-29T20:14:24,262   writing /tmp/pip-pip-egg-info-jo4fwd7v/mhcnuggets.egg-info/PKG-INFO
2023-03-29T20:14:24,267   writing dependency_links to /tmp/pip-pip-egg-info-jo4fwd7v/mhcnuggets.egg-info/dependency_links.txt
2023-03-29T20:14:24,272   writing requirements to /tmp/pip-pip-egg-info-jo4fwd7v/mhcnuggets.egg-info/requires.txt
2023-03-29T20:14:24,274   writing top-level names to /tmp/pip-pip-egg-info-jo4fwd7v/mhcnuggets.egg-info/top_level.txt
2023-03-29T20:14:24,276   writing manifest file '/tmp/pip-pip-egg-info-jo4fwd7v/mhcnuggets.egg-info/SOURCES.txt'
2023-03-29T20:14:24,527   reading manifest file '/tmp/pip-pip-egg-info-jo4fwd7v/mhcnuggets.egg-info/SOURCES.txt'
2023-03-29T20:14:24,531   reading manifest template 'MANIFEST.in'
2023-03-29T20:14:24,568   adding license file 'LICENSE'
2023-03-29T20:14:24,605   writing manifest file '/tmp/pip-pip-egg-info-jo4fwd7v/mhcnuggets.egg-info/SOURCES.txt'
2023-03-29T20:14:24,724   Preparing metadata (setup.py): finished with status 'done'
2023-03-29T20:14:24,737   Source in /tmp/pip-wheel-s7n6h02q/mhcnuggets_e6135d24f3124d48ba64a643cb6a93bf has version 2.4.1, which satisfies requirement mhcnuggets==2.4.1 from https://files.pythonhosted.org/packages/07/5f/94d4d24336f63435eddc924388bb7eac13bbefd55d1ac9b944333a7eabeb/mhcnuggets-2.4.1.tar.gz
2023-03-29T20:14:24,739   Removed mhcnuggets==2.4.1 from https://files.pythonhosted.org/packages/07/5f/94d4d24336f63435eddc924388bb7eac13bbefd55d1ac9b944333a7eabeb/mhcnuggets-2.4.1.tar.gz from build tracker '/tmp/pip-build-tracker-1niffz0b'
2023-03-29T20:14:24,750 Created temporary directory: /tmp/pip-unpack-5fv4dkl4
2023-03-29T20:14:24,751 Building wheels for collected packages: mhcnuggets
2023-03-29T20:14:24,760   Created temporary directory: /tmp/pip-wheel-s9o2_k9r
2023-03-29T20:14:24,761   Building wheel for mhcnuggets (setup.py): started
2023-03-29T20:14:24,763   Destination directory: /tmp/pip-wheel-s9o2_k9r
2023-03-29T20:14:24,763   Running command python setup.py bdist_wheel
2023-03-29T20:14:26,919   running bdist_wheel
2023-03-29T20:14:27,736   running build
2023-03-29T20:14:27,736   running build_py
2023-03-29T20:14:27,826   creating build
2023-03-29T20:14:27,827   creating build/lib
2023-03-29T20:14:27,829   creating build/lib/mhcnuggets
2023-03-29T20:14:27,831   copying mhcnuggets/__init__.py -> build/lib/mhcnuggets
2023-03-29T20:14:27,836   creating build/lib/mhcnuggets/data
2023-03-29T20:14:27,838   copying mhcnuggets/data/__init__.py -> build/lib/mhcnuggets/data
2023-03-29T20:14:27,843   creating build/lib/mhcnuggets/saves
2023-03-29T20:14:27,845   copying mhcnuggets/saves/__init__.py -> build/lib/mhcnuggets/saves
2023-03-29T20:14:27,852   creating build/lib/mhcnuggets/src
2023-03-29T20:14:27,854   copying mhcnuggets/src/dataset.py -> build/lib/mhcnuggets/src
2023-03-29T20:14:27,860   copying mhcnuggets/src/calculate_mhc_relations.py -> build/lib/mhcnuggets/src
2023-03-29T20:14:27,864   copying mhcnuggets/src/predict_from_vcf.py -> build/lib/mhcnuggets/src
2023-03-29T20:14:27,869   copying mhcnuggets/src/evaluate_all.py -> build/lib/mhcnuggets/src
2023-03-29T20:14:27,874   copying mhcnuggets/src/find_closest_mhcII.py -> build/lib/mhcnuggets/src
2023-03-29T20:14:27,879   copying mhcnuggets/src/extract_pep_sequences.py -> build/lib/mhcnuggets/src
2023-03-29T20:14:27,884   copying mhcnuggets/src/models.py -> build/lib/mhcnuggets/src
2023-03-29T20:14:27,888   copying mhcnuggets/src/__init__.py -> build/lib/mhcnuggets/src
2023-03-29T20:14:27,892   copying mhcnuggets/src/predict.py -> build/lib/mhcnuggets/src
2023-03-29T20:14:27,897   copying mhcnuggets/src/find_closest_mhcI.py -> build/lib/mhcnuggets/src
2023-03-29T20:14:27,902   copying mhcnuggets/src/train.py -> build/lib/mhcnuggets/src
2023-03-29T20:14:27,908   copying mhcnuggets/src/aa_embeddings.py -> build/lib/mhcnuggets/src
2023-03-29T20:14:27,912   copying mhcnuggets/src/supertypes.py -> build/lib/mhcnuggets/src
2023-03-29T20:14:27,920   copying mhcnuggets/src/get_candidate_neoantigens.py -> build/lib/mhcnuggets/src
2023-03-29T20:14:27,925   copying mhcnuggets/src/evaluate.py -> build/lib/mhcnuggets/src
2023-03-29T20:14:27,931   creating build/lib/mhcnuggets/data/test
2023-03-29T20:14:27,934   copying mhcnuggets/data/test/__init__.py -> build/lib/mhcnuggets/data/test
2023-03-29T20:14:27,939   creating build/lib/mhcnuggets/data/production
2023-03-29T20:14:27,942   copying mhcnuggets/data/production/__init__.py -> build/lib/mhcnuggets/data/production
2023-03-29T20:14:27,947   creating build/lib/mhcnuggets/data/production/mhcII
2023-03-29T20:14:27,949   copying mhcnuggets/data/production/mhcII/__init__.py -> build/lib/mhcnuggets/data/production/mhcII
2023-03-29T20:14:27,955   creating build/lib/mhcnuggets/data/production/mhcI
2023-03-29T20:14:27,957   copying mhcnuggets/data/production/mhcI/__init__.py -> build/lib/mhcnuggets/data/production/mhcI
2023-03-29T20:14:27,963   creating build/lib/mhcnuggets/saves/test
2023-03-29T20:14:27,965   copying mhcnuggets/saves/test/__init__.py -> build/lib/mhcnuggets/saves/test
2023-03-29T20:14:27,974   creating build/lib/mhcnuggets/saves/production
2023-03-29T20:14:27,976   copying mhcnuggets/saves/production/__init__.py -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:27,981   running egg_info
2023-03-29T20:14:28,160   writing mhcnuggets.egg-info/PKG-INFO
2023-03-29T20:14:28,164   writing dependency_links to mhcnuggets.egg-info/dependency_links.txt
2023-03-29T20:14:28,169   writing requirements to mhcnuggets.egg-info/requires.txt
2023-03-29T20:14:28,172   writing top-level names to mhcnuggets.egg-info/top_level.txt
2023-03-29T20:14:28,283   reading manifest file 'mhcnuggets.egg-info/SOURCES.txt'
2023-03-29T20:14:28,340   reading manifest template 'MANIFEST.in'
2023-03-29T20:14:28,378   adding license file 'LICENSE'
2023-03-29T20:14:28,430   writing manifest file 'mhcnuggets.egg-info/SOURCES.txt'
2023-03-29T20:14:28,512   copying mhcnuggets/README.md -> build/lib/mhcnuggets
2023-03-29T20:14:28,516   copying mhcnuggets/user_guide.ipynb -> build/lib/mhcnuggets
2023-03-29T20:14:28,522   copying mhcnuggets/data/test/test_peptides.peps -> build/lib/mhcnuggets/data/test
2023-03-29T20:14:28,526   copying mhcnuggets/data/production/examples_per_allele.pkl -> build/lib/mhcnuggets/data/production
2023-03-29T20:14:28,532   copying mhcnuggets/data/production/mhcII/alleles_with_trained_models.txt -> build/lib/mhcnuggets/data/production/mhcII
2023-03-29T20:14:28,537   copying mhcnuggets/data/production/mhcII/curated_training_data.csv -> build/lib/mhcnuggets/data/production/mhcII
2023-03-29T20:14:29,105   copying mhcnuggets/data/production/mhcII/hp_ic50s_cII.pkl -> build/lib/mhcnuggets/data/production/mhcII
2023-03-29T20:14:31,131   copying mhcnuggets/data/production/mhcII/hp_ic50s_first_percentiles_cII.pkl -> build/lib/mhcnuggets/data/production/mhcII
2023-03-29T20:14:31,137   copying mhcnuggets/data/production/mhcII/hp_ic50s_hp_lengths_cII.pkl -> build/lib/mhcnuggets/data/production/mhcII
2023-03-29T20:14:31,142   copying mhcnuggets/data/production/mhcII/hp_ic50s_positions_cII.pkl -> build/lib/mhcnuggets/data/production/mhcII
2023-03-29T20:14:37,012   copying mhcnuggets/data/production/mhcII/mhc_tuning.csv -> build/lib/mhcnuggets/data/production/mhcII
2023-03-29T20:14:37,018   copying mhcnuggets/data/production/mhcI/alleles_with_trained_models.txt -> build/lib/mhcnuggets/data/production/mhcI
2023-03-29T20:14:37,023   copying mhcnuggets/data/production/mhcI/curated_training_data.csv -> build/lib/mhcnuggets/data/production/mhcI
2023-03-29T20:14:37,807   copying mhcnuggets/data/production/mhcI/hp_ic50s_cI.pkl -> build/lib/mhcnuggets/data/production/mhcI
2023-03-29T20:14:39,832   copying mhcnuggets/data/production/mhcI/hp_ic50s_first_percentiles_cI.pkl -> build/lib/mhcnuggets/data/production/mhcI
2023-03-29T20:14:39,837   copying mhcnuggets/data/production/mhcI/hp_ic50s_hp_lengths_cI.pkl -> build/lib/mhcnuggets/data/production/mhcI
2023-03-29T20:14:39,842   copying mhcnuggets/data/production/mhcI/hp_ic50s_positions_cI.pkl -> build/lib/mhcnuggets/data/production/mhcI
2023-03-29T20:14:43,326   copying mhcnuggets/data/production/mhcI/mhc_tuning.csv -> build/lib/mhcnuggets/data/production/mhcI
2023-03-29T20:14:43,331   copying mhcnuggets/saves/test/HLA-A01:01_test_model.h5 -> build/lib/mhcnuggets/saves/test
2023-03-29T20:14:43,341   copying mhcnuggets/saves/test/HLA-A01:01_test_model.predictions -> build/lib/mhcnuggets/saves/test
2023-03-29T20:14:43,346   copying mhcnuggets/saves/production/BoLA-212:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:43,357   copying mhcnuggets/saves/production/BoLA-613:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:43,369   copying mhcnuggets/saves/production/BoLA-A11:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:43,381   copying mhcnuggets/saves/production/BoLA-DRB302:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:43,393   copying mhcnuggets/saves/production/BoLA-DRB311:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:43,404   copying mhcnuggets/saves/production/BoLA-DRB312:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:43,416   copying mhcnuggets/saves/production/Eqca-101:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:43,428   copying mhcnuggets/saves/production/H-2-Db_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:43,439   copying mhcnuggets/saves/production/H-2-Dd_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:43,450   copying mhcnuggets/saves/production/H-2-IAb_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:43,461   copying mhcnuggets/saves/production/H-2-IAd_BA.h5 -> build/lib/mhcnuggets/saves/production
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2023-03-29T20:14:46,838   copying mhcnuggets/saves/production/Mamu-DRB104:06_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:46,851   copying mhcnuggets/saves/production/Patr-A01:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:46,864   copying mhcnuggets/saves/production/Patr-A03:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:46,876   copying mhcnuggets/saves/production/Patr-A04:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:46,891   copying mhcnuggets/saves/production/Patr-A06:02_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:46,904   copying mhcnuggets/saves/production/Patr-A07:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:46,918   copying mhcnuggets/saves/production/Patr-A09:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:46,932   copying mhcnuggets/saves/production/Patr-B01:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:46,945   copying mhcnuggets/saves/production/Patr-B09:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:46,957   copying mhcnuggets/saves/production/Patr-B13:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:46,968   copying mhcnuggets/saves/production/Patr-B24:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:46,979   copying mhcnuggets/saves/production/SLA-104:01_BA.h5 -> build/lib/mhcnuggets/saves/production
2023-03-29T20:14:47,089   /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2023-03-29T20:14:47,090     setuptools.SetuptoolsDeprecationWarning,
2023-03-29T20:14:47,170   installing to build/bdist.linux-armv7l/wheel
2023-03-29T20:14:47,170   running install
2023-03-29T20:14:47,230   running install_lib
2023-03-29T20:14:47,315   creating build/bdist.linux-armv7l
2023-03-29T20:14:47,316   creating build/bdist.linux-armv7l/wheel
2023-03-29T20:14:47,319   creating build/bdist.linux-armv7l/wheel/mhcnuggets
2023-03-29T20:14:47,322   copying build/lib/mhcnuggets/README.md -> build/bdist.linux-armv7l/wheel/mhcnuggets
2023-03-29T20:14:47,327   creating build/bdist.linux-armv7l/wheel/mhcnuggets/data
2023-03-29T20:14:47,329   copying build/lib/mhcnuggets/data/__init__.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/data
2023-03-29T20:14:47,334   creating build/bdist.linux-armv7l/wheel/mhcnuggets/data/test
2023-03-29T20:14:47,336   copying build/lib/mhcnuggets/data/test/test_peptides.peps -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/test
2023-03-29T20:14:47,340   copying build/lib/mhcnuggets/data/test/__init__.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/test
2023-03-29T20:14:47,345   creating build/bdist.linux-armv7l/wheel/mhcnuggets/data/production
2023-03-29T20:14:47,347   copying build/lib/mhcnuggets/data/production/examples_per_allele.pkl -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production
2023-03-29T20:14:47,351   copying build/lib/mhcnuggets/data/production/__init__.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production
2023-03-29T20:14:47,356   creating build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcII
2023-03-29T20:14:47,358   copying build/lib/mhcnuggets/data/production/mhcII/alleles_with_trained_models.txt -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcII
2023-03-29T20:14:47,362   copying build/lib/mhcnuggets/data/production/mhcII/hp_ic50s_first_percentiles_cII.pkl -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcII
2023-03-29T20:14:47,366   copying build/lib/mhcnuggets/data/production/mhcII/__init__.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcII
2023-03-29T20:14:47,370   copying build/lib/mhcnuggets/data/production/mhcII/hp_ic50s_hp_lengths_cII.pkl -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcII
2023-03-29T20:14:47,374   copying build/lib/mhcnuggets/data/production/mhcII/mhc_tuning.csv -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcII
2023-03-29T20:14:47,378   copying build/lib/mhcnuggets/data/production/mhcII/hp_ic50s_cII.pkl -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcII
2023-03-29T20:14:49,447   copying build/lib/mhcnuggets/data/production/mhcII/curated_training_data.csv -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcII
2023-03-29T20:14:49,888   copying build/lib/mhcnuggets/data/production/mhcII/hp_ic50s_positions_cII.pkl -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcII
2023-03-29T20:14:52,898   creating build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcI
2023-03-29T20:14:52,900   copying build/lib/mhcnuggets/data/production/mhcI/alleles_with_trained_models.txt -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcI
2023-03-29T20:14:52,904   copying build/lib/mhcnuggets/data/production/mhcI/hp_ic50s_cI.pkl -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcI
2023-03-29T20:14:54,637   copying build/lib/mhcnuggets/data/production/mhcI/hp_ic50s_positions_cI.pkl -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcI
2023-03-29T20:15:01,372   copying build/lib/mhcnuggets/data/production/mhcI/__init__.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcI
2023-03-29T20:15:01,376   copying build/lib/mhcnuggets/data/production/mhcI/hp_ic50s_first_percentiles_cI.pkl -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcI
2023-03-29T20:15:01,380   copying build/lib/mhcnuggets/data/production/mhcI/mhc_tuning.csv -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcI
2023-03-29T20:15:01,384   copying build/lib/mhcnuggets/data/production/mhcI/curated_training_data.csv -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcI
2023-03-29T20:15:02,237   copying build/lib/mhcnuggets/data/production/mhcI/hp_ic50s_hp_lengths_cI.pkl -> build/bdist.linux-armv7l/wheel/mhcnuggets/data/production/mhcI
2023-03-29T20:15:02,241   copying build/lib/mhcnuggets/__init__.py -> build/bdist.linux-armv7l/wheel/mhcnuggets
2023-03-29T20:15:02,246   creating build/bdist.linux-armv7l/wheel/mhcnuggets/saves
2023-03-29T20:15:02,248   copying build/lib/mhcnuggets/saves/__init__.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves
2023-03-29T20:15:02,252   creating build/bdist.linux-armv7l/wheel/mhcnuggets/saves/test
2023-03-29T20:15:02,254   copying build/lib/mhcnuggets/saves/test/__init__.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/test
2023-03-29T20:15:02,258   copying build/lib/mhcnuggets/saves/test/HLA-A01:01_test_model.predictions -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/test
2023-03-29T20:15:02,261   copying build/lib/mhcnuggets/saves/test/HLA-A01:01_test_model.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/test
2023-03-29T20:15:02,284   creating build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,285   copying build/lib/mhcnuggets/saves/production/H-2-IAb_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,297   copying build/lib/mhcnuggets/saves/production/HLA-E01:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,308   copying build/lib/mhcnuggets/saves/production/HLA-B15:42_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,320   copying build/lib/mhcnuggets/saves/production/HLA-DQA101:01-DQB105:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,330   copying build/lib/mhcnuggets/saves/production/HLA-C12:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,340   copying build/lib/mhcnuggets/saves/production/Patr-B09:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,352   copying build/lib/mhcnuggets/saves/production/HLA-B18:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,365   copying build/lib/mhcnuggets/saves/production/HLA-DRA01:01-DRB303:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,378   copying build/lib/mhcnuggets/saves/production/HLA-B15:09_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,390   copying build/lib/mhcnuggets/saves/production/HLA-DRA01:01-DRB104:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,402   copying build/lib/mhcnuggets/saves/production/H-2-IAq_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,412   copying build/lib/mhcnuggets/saves/production/HLA-B15:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,422   copying build/lib/mhcnuggets/saves/production/HLA-B44:03_BA_to_HLAp.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,432   copying build/lib/mhcnuggets/saves/production/HLA-DRB116:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,442   copying build/lib/mhcnuggets/saves/production/HLA-DRA01:01-DRB115:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,453   copying build/lib/mhcnuggets/saves/production/HLA-DRB115:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,464   copying build/lib/mhcnuggets/saves/production/HLA-C14:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,479   copying build/lib/mhcnuggets/saves/production/HLA-B51:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,494   copying build/lib/mhcnuggets/saves/production/HLA-A02:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,506   copying build/lib/mhcnuggets/saves/production/HLA-B44:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,519   copying build/lib/mhcnuggets/saves/production/HLA-A03:01_BA_to_HLAp.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,529   copying build/lib/mhcnuggets/saves/production/HLA-DRB112:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,539   copying build/lib/mhcnuggets/saves/production/H-2-IAu_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,552   copying build/lib/mhcnuggets/saves/production/H-2-Db_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,565   copying build/lib/mhcnuggets/saves/production/HLA-DRB115:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,575   copying build/lib/mhcnuggets/saves/production/HLA-DRB113:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,586   copying build/lib/mhcnuggets/saves/production/HLA-DPB103:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,599   copying build/lib/mhcnuggets/saves/production/HLA-A32:15_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,610   copying build/lib/mhcnuggets/saves/production/HLA-DPA102:01-DPB101:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,620   copying build/lib/mhcnuggets/saves/production/Patr-A06:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,630   copying build/lib/mhcnuggets/saves/production/HLA-DPB105:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,641   copying build/lib/mhcnuggets/saves/production/H-2-IAd_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,651   copying build/lib/mhcnuggets/saves/production/HLA-DQA102:01-DQB102:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,662   copying build/lib/mhcnuggets/saves/production/BoLA-DRB302:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,676   copying build/lib/mhcnuggets/saves/production/HLA-B54:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,691   copying build/lib/mhcnuggets/saves/production/HLA-A02:06_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,705   copying build/lib/mhcnuggets/saves/production/BoLA-DRB312:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,717   copying build/lib/mhcnuggets/saves/production/Patr-A03:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,730   copying build/lib/mhcnuggets/saves/production/HLA-A29:02_BA_to_HLAp.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,742   copying build/lib/mhcnuggets/saves/production/HLA-A02:11_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,753   copying build/lib/mhcnuggets/saves/production/HLA-DRB108:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,764   copying build/lib/mhcnuggets/saves/production/HLA-DQA105:01-DQB104:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,775   copying build/lib/mhcnuggets/saves/production/HLA-DQA105:01-DQB103:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,789   copying build/lib/mhcnuggets/saves/production/HLA-DPB104:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,800   copying build/lib/mhcnuggets/saves/production/HLA-DQA103:03-DQB104:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,812   copying build/lib/mhcnuggets/saves/production/HLA-DQA105:01-DQB102:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,822   copying build/lib/mhcnuggets/saves/production/HLA-DPA103:01-DPB104:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,832   copying build/lib/mhcnuggets/saves/production/HLA-A02:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,842   copying build/lib/mhcnuggets/saves/production/HLA-B27:20_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,853   copying build/lib/mhcnuggets/saves/production/HLA-DQB105:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,863   copying build/lib/mhcnuggets/saves/production/HLA-DRB103:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,876   copying build/lib/mhcnuggets/saves/production/HLA-DQA102:01-DQB103:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,888   copying build/lib/mhcnuggets/saves/production/HLA-DQA102:01-DQB102:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,900   copying build/lib/mhcnuggets/saves/production/Mamu-A26:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,911   copying build/lib/mhcnuggets/saves/production/HLA-DQA105:01-DQB103:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,924   copying build/lib/mhcnuggets/saves/production/HLA-A02:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,942   copying build/lib/mhcnuggets/saves/production/HLA-B35:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,954   copying build/lib/mhcnuggets/saves/production/HLA-B40:13_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,964   copying build/lib/mhcnuggets/saves/production/HLA-DQA103:01-DQB104:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,977   copying build/lib/mhcnuggets/saves/production/HLA-BF02:2101_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:02,990   copying build/lib/mhcnuggets/saves/production/HLA-A80:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:03,001   copying build/lib/mhcnuggets/saves/production/HLA-A03:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:03,011   copying build/lib/mhcnuggets/saves/production/HLA-DRB113:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:03,023   copying build/lib/mhcnuggets/saves/production/HLA-C08:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:03,037   copying build/lib/mhcnuggets/saves/production/HLA-DRA01:01-DRB109:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:03,051   copying build/lib/mhcnuggets/saves/production/HLA-DRB109:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:03,062   copying build/lib/mhcnuggets/saves/production/HLA-B35:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:03,072   copying build/lib/mhcnuggets/saves/production/HLA-DPB104:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:03,083   copying build/lib/mhcnuggets/saves/production/HLA-DRA01:01-DRB401:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:03,094   copying build/lib/mhcnuggets/saves/production/HLA-B14:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:03,105   copying build/lib/mhcnuggets/saves/production/HLA-DRB104:05_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:03,117   copying build/lib/mhcnuggets/saves/production/HLA-DQA103:01-DQB103:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
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2023-03-29T20:15:03,148   copying build/lib/mhcnuggets/saves/production/HLA-DQA101:02-DQB105:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
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2023-03-29T20:15:03,824   copying build/lib/mhcnuggets/saves/production/HLA-DRA01:01-DRB104:04_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:03,834   copying build/lib/mhcnuggets/saves/production/SLA-104:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
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2023-03-29T20:15:03,857   copying build/lib/mhcnuggets/saves/production/HLA-DPA102:01-DPB105:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
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2023-03-29T20:15:03,979   copying build/lib/mhcnuggets/saves/production/HLA-DQA103:02-DQB103:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
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2023-03-29T20:15:04,024   copying build/lib/mhcnuggets/saves/production/HLA-C03:04_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
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2023-03-29T20:15:04,164   copying build/lib/mhcnuggets/saves/production/HLA-DQA101:03-DQB106:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
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2023-03-29T20:15:04,359   copying build/lib/mhcnuggets/saves/production/HLA-DQA102:01-DQB103:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,370   copying build/lib/mhcnuggets/saves/production/HLA-DRB111:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,379   copying build/lib/mhcnuggets/saves/production/HLA-B44:02_BA_to_HLAp.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,392   copying build/lib/mhcnuggets/saves/production/BoLA-A11:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,404   copying build/lib/mhcnuggets/saves/production/HLA-B27:06_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,415   copying build/lib/mhcnuggets/saves/production/HLA-DRB104:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,425   copying build/lib/mhcnuggets/saves/production/HLA-DQA101:02-DQB106:04_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
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2023-03-29T20:15:04,445   copying build/lib/mhcnuggets/saves/production/HLA-RT11:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,458   copying build/lib/mhcnuggets/saves/production/HLA-A31:01_BA_to_HLAp.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,478   copying build/lib/mhcnuggets/saves/production/HLA-B51:01_BA_to_HLAp.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,487   copying build/lib/mhcnuggets/saves/production/HLA-C08:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,502   copying build/lib/mhcnuggets/saves/production/HLA-DRB107:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,517   copying build/lib/mhcnuggets/saves/production/HLA-B08:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,533   copying build/lib/mhcnuggets/saves/production/HLA-DPB120:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,543   copying build/lib/mhcnuggets/saves/production/HLA-DRB104:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,558   copying build/lib/mhcnuggets/saves/production/HLA-A68:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,570   copying build/lib/mhcnuggets/saves/production/HLA-B48:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,581   copying build/lib/mhcnuggets/saves/production/HLA-DPA102:02-DPB105:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,593   copying build/lib/mhcnuggets/saves/production/H-2-IEb_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,606   copying build/lib/mhcnuggets/saves/production/HLA-B08:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,619   copying build/lib/mhcnuggets/saves/production/HLA-A02:07_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,629   copying build/lib/mhcnuggets/saves/production/HLA-DRA01:01-DRB302:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,642   copying build/lib/mhcnuggets/saves/production/Mamu-B08:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,654   copying build/lib/mhcnuggets/saves/production/HLA-DQA101:04-DQB105:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,665   copying build/lib/mhcnuggets/saves/production/HLA-DQB102:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,675   copying build/lib/mhcnuggets/saves/production/HLA-DRB114:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
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2023-03-29T20:15:04,700   copying build/lib/mhcnuggets/saves/production/HLA-DRB104:06_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,712   copying build/lib/mhcnuggets/saves/production/HLA-B27:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,723   copying build/lib/mhcnuggets/saves/production/BoLA-DRB311:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,733   copying build/lib/mhcnuggets/saves/production/HLA-DQB105:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,743   copying build/lib/mhcnuggets/saves/production/HLA-A02:05_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,753   copying build/lib/mhcnuggets/saves/production/HLA-A02:16_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,763   copying build/lib/mhcnuggets/saves/production/HLA-DQB106:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,774   copying build/lib/mhcnuggets/saves/production/HLA-B35:08_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,784   copying build/lib/mhcnuggets/saves/production/HLA-B44:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,794   copying build/lib/mhcnuggets/saves/production/HLA-A26:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,805   copying build/lib/mhcnuggets/saves/production/HLA-A24:02_BA_to_HLAp.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,814   copying build/lib/mhcnuggets/saves/production/Mamu-A02:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
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2023-03-29T20:15:04,835   copying build/lib/mhcnuggets/saves/production/HLA-B58:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,846   copying build/lib/mhcnuggets/saves/production/HLA-A31:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,857   copying build/lib/mhcnuggets/saves/production/HLA-B46:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,867   copying build/lib/mhcnuggets/saves/production/HLA-A30:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,879   copying build/lib/mhcnuggets/saves/production/HLA-DPA101:03-DPB102:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,889   copying build/lib/mhcnuggets/saves/production/HLA-B15:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,900   copying build/lib/mhcnuggets/saves/production/HLA-A24:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,913   copying build/lib/mhcnuggets/saves/production/Mamu-B01:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,925   copying build/lib/mhcnuggets/saves/production/Mamu-B17:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,939   copying build/lib/mhcnuggets/saves/production/Patr-A07:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,952   copying build/lib/mhcnuggets/saves/production/HLA-A01:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,964   copying build/lib/mhcnuggets/saves/production/HLA-DRB301:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,977   copying build/lib/mhcnuggets/saves/production/HLA-B58:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:04,990   copying build/lib/mhcnuggets/saves/production/HLA-DRB104:07_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,000   copying build/lib/mhcnuggets/saves/production/H-2-IAr_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,010   copying build/lib/mhcnuggets/saves/production/HLA-A24:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,021   copying build/lib/mhcnuggets/saves/production/Patr-A09:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,031   copying build/lib/mhcnuggets/saves/production/HLA-DRA01:01-DRB501:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,041   copying build/lib/mhcnuggets/saves/production/BoLA-613:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,054   copying build/lib/mhcnuggets/saves/production/Mamu-B52:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,065   copying build/lib/mhcnuggets/saves/production/HLA-A02:17_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,075   copying build/lib/mhcnuggets/saves/production/HLA-A11:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,087   copying build/lib/mhcnuggets/saves/production/Patr-A01:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,097   copying build/lib/mhcnuggets/saves/production/HLA-B83:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,107   copying build/lib/mhcnuggets/saves/production/HLA-BF02:0401_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,118   copying build/lib/mhcnuggets/saves/production/HLA-DQA101:02-DQB106:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,130   copying build/lib/mhcnuggets/saves/production/HLA-C07:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,140   copying build/lib/mhcnuggets/saves/production/HLA-A68:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,151   copying build/lib/mhcnuggets/saves/production/HLA-B57:01_BA_to_HLAp.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,162   copying build/lib/mhcnuggets/saves/production/HLA-B40:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,173   copying build/lib/mhcnuggets/saves/production/HLA-B07:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,184   copying build/lib/mhcnuggets/saves/production/HLA-A68:02_BA_to_HLAp.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,195   copying build/lib/mhcnuggets/saves/production/H-2-Dd_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,205   copying build/lib/mhcnuggets/saves/production/HLA-DRA01:01-DRB103:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,217   copying build/lib/mhcnuggets/saves/production/Mamu-DRB01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,228   copying build/lib/mhcnuggets/saves/production/HLA-DQB104:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,241   copying build/lib/mhcnuggets/saves/production/HLA-DRA01:01-DRB113:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,252   copying build/lib/mhcnuggets/saves/production/HLA-DRA01:01-DRB107:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,264   copying build/lib/mhcnuggets/saves/production/HLA-B62:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,275   copying build/lib/mhcnuggets/saves/production/Patr-B13:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,286   copying build/lib/mhcnuggets/saves/production/HLA-B35:01_BA_to_HLAp.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,298   copying build/lib/mhcnuggets/saves/production/HLA-A02:50_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,308   copying build/lib/mhcnuggets/saves/production/HLA-DRB108:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,319   copying build/lib/mhcnuggets/saves/production/HLA-DRA01:01-DRB301:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,329   copying build/lib/mhcnuggets/saves/production/HLA-A23:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,339   copying build/lib/mhcnuggets/saves/production/HLA-B45:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,367   copying build/lib/mhcnuggets/saves/production/HLA-B39:06_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,377   copying build/lib/mhcnuggets/saves/production/HLA-DQB103:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,388   copying build/lib/mhcnuggets/saves/production/HLA-A01:01_BA_to_HLAp.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,398   copying build/lib/mhcnuggets/saves/production/HLA-B27:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,409   copying build/lib/mhcnuggets/saves/production/HLA-DRB111:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,419   copying build/lib/mhcnuggets/saves/production/HLA-DQA104:01-DQB104:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,429   copying build/lib/mhcnuggets/saves/production/HLA-B44:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
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2023-03-29T20:15:05,459   copying build/lib/mhcnuggets/saves/production/H-2-Kk_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,470   copying build/lib/mhcnuggets/saves/production/HLA-B27:05_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,479   copying build/lib/mhcnuggets/saves/production/Mamu-B66:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,489   copying build/lib/mhcnuggets/saves/production/HLA-DRB401:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,499   copying build/lib/mhcnuggets/saves/production/HLA-DRB302:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,510   copying build/lib/mhcnuggets/saves/production/HLA-B57:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
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2023-03-29T20:15:05,531   copying build/lib/mhcnuggets/saves/production/Mamu-DRB104:06_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,541   copying build/lib/mhcnuggets/saves/production/HLA-DRB101:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,552   copying build/lib/mhcnuggets/saves/production/HLA-DQA103:02-DQB104:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,563   copying build/lib/mhcnuggets/saves/production/HLA-A69:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,574   copying build/lib/mhcnuggets/saves/production/HLA-B08:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,583   copying build/lib/mhcnuggets/saves/production/Mamu-A02:0102_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,594   copying build/lib/mhcnuggets/saves/production/HLA-DQA103:01-DQB103:02_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,606   copying build/lib/mhcnuggets/saves/production/HLA-DQA103:01-DQB102:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,618   copying build/lib/mhcnuggets/saves/production/HLA-A32:07_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,631   copying build/lib/mhcnuggets/saves/production/HLA-RT01:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,644   copying build/lib/mhcnuggets/saves/production/HLA-DRA01:01-DRB101:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,657   copying build/lib/mhcnuggets/saves/production/HLA-DQB105:01_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,667   copying build/lib/mhcnuggets/saves/production/HLA-B15:03_BA.h5 -> build/bdist.linux-armv7l/wheel/mhcnuggets/saves/production
2023-03-29T20:15:05,681   creating build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,683   copying build/lib/mhcnuggets/src/dataset.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,688   copying build/lib/mhcnuggets/src/calculate_mhc_relations.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,692   copying build/lib/mhcnuggets/src/predict_from_vcf.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,697   copying build/lib/mhcnuggets/src/evaluate_all.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,701   copying build/lib/mhcnuggets/src/find_closest_mhcII.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,706   copying build/lib/mhcnuggets/src/extract_pep_sequences.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,710   copying build/lib/mhcnuggets/src/models.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,713   copying build/lib/mhcnuggets/src/__init__.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,717   copying build/lib/mhcnuggets/src/predict.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,721   copying build/lib/mhcnuggets/src/find_closest_mhcI.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,725   copying build/lib/mhcnuggets/src/train.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,729   copying build/lib/mhcnuggets/src/aa_embeddings.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,733   copying build/lib/mhcnuggets/src/supertypes.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,739   copying build/lib/mhcnuggets/src/get_candidate_neoantigens.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,743   copying build/lib/mhcnuggets/src/evaluate.py -> build/bdist.linux-armv7l/wheel/mhcnuggets/src
2023-03-29T20:15:05,749   copying build/lib/mhcnuggets/user_guide.ipynb -> build/bdist.linux-armv7l/wheel/mhcnuggets
2023-03-29T20:15:05,753   running install_egg_info
2023-03-29T20:15:05,853   Copying mhcnuggets.egg-info to build/bdist.linux-armv7l/wheel/mhcnuggets-2.4.1-py3.7.egg-info
2023-03-29T20:15:05,878   running install_scripts
2023-03-29T20:15:05,912   creating build/bdist.linux-armv7l/wheel/mhcnuggets-2.4.1.dist-info/WHEEL
2023-03-29T20:15:05,917   creating '/tmp/pip-wheel-s9o2_k9r/mhcnuggets-2.4.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-03-29T20:15:05,922   adding 'mhcnuggets/README.md'
2023-03-29T20:15:05,924   adding 'mhcnuggets/__init__.py'
2023-03-29T20:15:05,928   adding 'mhcnuggets/user_guide.ipynb'
2023-03-29T20:15:05,932   adding 'mhcnuggets/data/__init__.py'
2023-03-29T20:15:05,935   adding 'mhcnuggets/data/production/__init__.py'
2023-03-29T20:15:05,940   adding 'mhcnuggets/data/production/examples_per_allele.pkl'
2023-03-29T20:15:05,943   adding 'mhcnuggets/data/production/mhcI/__init__.py'
2023-03-29T20:15:05,946   adding 'mhcnuggets/data/production/mhcI/alleles_with_trained_models.txt'
2023-03-29T20:15:08,350   adding 'mhcnuggets/data/production/mhcI/curated_training_data.csv'
2023-03-29T20:15:20,310   adding 'mhcnuggets/data/production/mhcI/hp_ic50s_cI.pkl'
2023-03-29T20:15:21,249   adding 'mhcnuggets/data/production/mhcI/hp_ic50s_first_percentiles_cI.pkl'
2023-03-29T20:15:21,253   adding 'mhcnuggets/data/production/mhcI/hp_ic50s_hp_lengths_cI.pkl'
2023-03-29T20:16:13,236   adding 'mhcnuggets/data/production/mhcI/hp_ic50s_positions_cI.pkl'
2023-03-29T20:16:15,168   adding 'mhcnuggets/data/production/mhcI/mhc_tuning.csv'
2023-03-29T20:16:15,172   adding 'mhcnuggets/data/production/mhcII/__init__.py'
2023-03-29T20:16:15,174   adding 'mhcnuggets/data/production/mhcII/alleles_with_trained_models.txt'
2023-03-29T20:16:16,353   adding 'mhcnuggets/data/production/mhcII/curated_training_data.csv'
2023-03-29T20:16:28,949   adding 'mhcnuggets/data/production/mhcII/hp_ic50s_cII.pkl'
2023-03-29T20:16:29,964   adding 'mhcnuggets/data/production/mhcII/hp_ic50s_first_percentiles_cII.pkl'
2023-03-29T20:16:29,968   adding 'mhcnuggets/data/production/mhcII/hp_ic50s_hp_lengths_cII.pkl'
2023-03-29T20:17:23,199   adding 'mhcnuggets/data/production/mhcII/hp_ic50s_positions_cII.pkl'
2023-03-29T20:17:25,004   adding 'mhcnuggets/data/production/mhcII/mhc_tuning.csv'
2023-03-29T20:17:25,009   adding 'mhcnuggets/data/test/__init__.py'
2023-03-29T20:17:25,012   adding 'mhcnuggets/data/test/test_peptides.peps'
2023-03-29T20:17:25,016   adding 'mhcnuggets/saves/__init__.py'
2023-03-29T20:17:25,072   adding 'mhcnuggets/saves/production/BoLA-212:01_BA.h5'
2023-03-29T20:17:25,116   adding 'mhcnuggets/saves/production/BoLA-613:01_BA.h5'
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2023-03-29T20:17:25,249   adding 'mhcnuggets/saves/production/BoLA-DRB311:01_BA.h5'
2023-03-29T20:17:25,293   adding 'mhcnuggets/saves/production/BoLA-DRB312:01_BA.h5'
2023-03-29T20:17:25,338   adding 'mhcnuggets/saves/production/Eqca-101:01_BA.h5'
2023-03-29T20:17:25,381   adding 'mhcnuggets/saves/production/H-2-Db_BA.h5'
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2023-03-29T20:17:25,957   adding 'mhcnuggets/saves/production/H-2-IEp_BA.h5'
2023-03-29T20:17:26,000   adding 'mhcnuggets/saves/production/H-2-IEr_BA.h5'
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2023-03-29T20:17:26,218   adding 'mhcnuggets/saves/production/HLA-A01:01_BA.h5'
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2023-03-29T20:17:26,305   adding 'mhcnuggets/saves/production/HLA-A02:01_BA.h5'
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2023-03-29T20:17:26,522   adding 'mhcnuggets/saves/production/HLA-A02:05_BA.h5'
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2023-03-29T20:17:26,610   adding 'mhcnuggets/saves/production/HLA-A02:07_BA.h5'
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2023-03-29T20:17:26,697   adding 'mhcnuggets/saves/production/HLA-A02:11_BA.h5'
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2023-03-29T20:17:26,785   adding 'mhcnuggets/saves/production/HLA-A02:16_BA.h5'
2023-03-29T20:17:26,829   adding 'mhcnuggets/saves/production/HLA-A02:17_BA.h5'
2023-03-29T20:17:26,872   adding 'mhcnuggets/saves/production/HLA-A02:19_BA.h5'
2023-03-29T20:17:26,920   adding 'mhcnuggets/saves/production/HLA-A02:50_BA.h5'
2023-03-29T20:17:26,963   adding 'mhcnuggets/saves/production/HLA-A03:01_BA.h5'
2023-03-29T20:17:27,008   adding 'mhcnuggets/saves/production/HLA-A03:01_BA_to_HLAp.h5'
2023-03-29T20:17:27,051   adding 'mhcnuggets/saves/production/HLA-A03:19_BA.h5'
2023-03-29T20:17:27,095   adding 'mhcnuggets/saves/production/HLA-A11:01_BA.h5'
2023-03-29T20:17:27,139   adding 'mhcnuggets/saves/production/HLA-A23:01_BA.h5'
2023-03-29T20:17:27,184   adding 'mhcnuggets/saves/production/HLA-A24:01_BA.h5'
2023-03-29T20:17:27,228   adding 'mhcnuggets/saves/production/HLA-A24:02_BA.h5'
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2023-03-29T20:17:27,316   adding 'mhcnuggets/saves/production/HLA-A24:03_BA.h5'
2023-03-29T20:17:27,360   adding 'mhcnuggets/saves/production/HLA-A25:01_BA.h5'
2023-03-29T20:17:27,404   adding 'mhcnuggets/saves/production/HLA-A26:01_BA.h5'
2023-03-29T20:17:27,449   adding 'mhcnuggets/saves/production/HLA-A26:02_BA.h5'
2023-03-29T20:17:27,495   adding 'mhcnuggets/saves/production/HLA-A26:03_BA.h5'
2023-03-29T20:17:27,540   adding 'mhcnuggets/saves/production/HLA-A29:02_BA.h5'
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2023-03-29T20:17:27,628   adding 'mhcnuggets/saves/production/HLA-A30:01_BA.h5'
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2023-03-29T20:17:27,716   adding 'mhcnuggets/saves/production/HLA-A31:01_BA.h5'
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2023-03-29T20:17:27,804   adding 'mhcnuggets/saves/production/HLA-A32:01_BA.h5'
2023-03-29T20:17:27,847   adding 'mhcnuggets/saves/production/HLA-A32:07_BA.h5'
2023-03-29T20:17:27,892   adding 'mhcnuggets/saves/production/HLA-A32:15_BA.h5'
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2023-03-29T20:17:28,023   adding 'mhcnuggets/saves/production/HLA-A68:01_BA.h5'
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2023-03-29T20:17:28,496   adding 'mhcnuggets/saves/production/HLA-A80:01_BA.h5'
2023-03-29T20:17:28,540   adding 'mhcnuggets/saves/production/HLA-B07:01_BA.h5'
2023-03-29T20:17:28,584   adding 'mhcnuggets/saves/production/HLA-B07:02_BA.h5'
2023-03-29T20:17:28,627   adding 'mhcnuggets/saves/production/HLA-B08:01_BA.h5'
2023-03-29T20:17:28,672   adding 'mhcnuggets/saves/production/HLA-B08:02_BA.h5'
2023-03-29T20:17:28,715   adding 'mhcnuggets/saves/production/HLA-B08:03_BA.h5'
2023-03-29T20:17:28,759   adding 'mhcnuggets/saves/production/HLA-B14:01_BA.h5'
2023-03-29T20:17:28,803   adding 'mhcnuggets/saves/production/HLA-B14:02_BA.h5'
2023-03-29T20:17:28,847   adding 'mhcnuggets/saves/production/HLA-B15:01_BA.h5'
2023-03-29T20:17:28,890   adding 'mhcnuggets/saves/production/HLA-B15:02_BA.h5'
2023-03-29T20:17:28,935   adding 'mhcnuggets/saves/production/HLA-B15:03_BA.h5'
2023-03-29T20:17:28,978   adding 'mhcnuggets/saves/production/HLA-B15:09_BA.h5'
2023-03-29T20:17:29,023   adding 'mhcnuggets/saves/production/HLA-B15:16_BA.h5'
2023-03-29T20:17:29,067   adding 'mhcnuggets/saves/production/HLA-B15:17_BA.h5'
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2023-03-29T20:17:29,154   adding 'mhcnuggets/saves/production/HLA-B18:01_BA.h5'
2023-03-29T20:17:29,199   adding 'mhcnuggets/saves/production/HLA-B27:01_BA.h5'
2023-03-29T20:17:29,243   adding 'mhcnuggets/saves/production/HLA-B27:02_BA.h5'
2023-03-29T20:17:29,287   adding 'mhcnuggets/saves/production/HLA-B27:03_BA.h5'
2023-03-29T20:17:29,330   adding 'mhcnuggets/saves/production/HLA-B27:04_BA.h5'
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2023-03-29T20:17:29,418   adding 'mhcnuggets/saves/production/HLA-B27:06_BA.h5'
2023-03-29T20:17:29,463   adding 'mhcnuggets/saves/production/HLA-B27:09_BA.h5'
2023-03-29T20:17:29,506   adding 'mhcnuggets/saves/production/HLA-B27:20_BA.h5'
2023-03-29T20:17:29,551   adding 'mhcnuggets/saves/production/HLA-B35:01_BA.h5'
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2023-03-29T20:17:31,049   adding 'mhcnuggets/saves/production/HLA-B83:01_BA.h5'
2023-03-29T20:17:31,092   adding 'mhcnuggets/saves/production/HLA-BF02:0401_BA.h5'
2023-03-29T20:17:31,136   adding 'mhcnuggets/saves/production/HLA-BF02:2101_BA.h5'
2023-03-29T20:17:31,179   adding 'mhcnuggets/saves/production/HLA-C03:03_BA.h5'
2023-03-29T20:17:31,223   adding 'mhcnuggets/saves/production/HLA-C03:04_BA.h5'
2023-03-29T20:17:31,267   adding 'mhcnuggets/saves/production/HLA-C04:01_BA.h5'
2023-03-29T20:17:31,311   adding 'mhcnuggets/saves/production/HLA-C05:01_BA.h5'
2023-03-29T20:17:31,354   adding 'mhcnuggets/saves/production/HLA-C06:02_BA.h5'
2023-03-29T20:17:31,399   adding 'mhcnuggets/saves/production/HLA-C07:01_BA.h5'
2023-03-29T20:17:31,442   adding 'mhcnuggets/saves/production/HLA-C07:02_BA.h5'
2023-03-29T20:17:31,486   adding 'mhcnuggets/saves/production/HLA-C08:01_BA.h5'
2023-03-29T20:17:31,529   adding 'mhcnuggets/saves/production/HLA-C08:02_BA.h5'
2023-03-29T20:17:31,573   adding 'mhcnuggets/saves/production/HLA-C12:03_BA.h5'
2023-03-29T20:17:31,617   adding 'mhcnuggets/saves/production/HLA-C14:02_BA.h5'
2023-03-29T20:17:31,661   adding 'mhcnuggets/saves/production/HLA-C15:02_BA.h5'
2023-03-29T20:17:31,704   adding 'mhcnuggets/saves/production/HLA-DPA101:03-DPB102:01_BA.h5'
2023-03-29T20:17:31,749   adding 'mhcnuggets/saves/production/HLA-DPA101:03-DPB103:01_BA.h5'
2023-03-29T20:17:31,792   adding 'mhcnuggets/saves/production/HLA-DPA101:03-DPB104:01_BA.h5'
2023-03-29T20:17:31,836   adding 'mhcnuggets/saves/production/HLA-DPA101:03-DPB104:02_BA.h5'
2023-03-29T20:17:31,880   adding 'mhcnuggets/saves/production/HLA-DPA102:01-DPB101:01_BA.h5'
2023-03-29T20:17:31,923   adding 'mhcnuggets/saves/production/HLA-DPA102:01-DPB105:01_BA.h5'
2023-03-29T20:17:31,967   adding 'mhcnuggets/saves/production/HLA-DPA102:02-DPB105:01_BA.h5'
2023-03-29T20:17:32,011   adding 'mhcnuggets/saves/production/HLA-DPA103:01-DPB104:02_BA.h5'
2023-03-29T20:17:32,054   adding 'mhcnuggets/saves/production/HLA-DPB101:01_BA.h5'
2023-03-29T20:17:32,098   adding 'mhcnuggets/saves/production/HLA-DPB102:01_BA.h5'
2023-03-29T20:17:32,142   adding 'mhcnuggets/saves/production/HLA-DPB103:01_BA.h5'
2023-03-29T20:17:32,185   adding 'mhcnuggets/saves/production/HLA-DPB104:01_BA.h5'
2023-03-29T20:17:32,229   adding 'mhcnuggets/saves/production/HLA-DPB104:02_BA.h5'
2023-03-29T20:17:32,273   adding 'mhcnuggets/saves/production/HLA-DPB105:01_BA.h5'
2023-03-29T20:17:32,317   adding 'mhcnuggets/saves/production/HLA-DPB109:01_BA.h5'
2023-03-29T20:17:32,360   adding 'mhcnuggets/saves/production/HLA-DPB111:01_BA.h5'
2023-03-29T20:17:32,404   adding 'mhcnuggets/saves/production/HLA-DPB114:01_BA.h5'
2023-03-29T20:17:32,448   adding 'mhcnuggets/saves/production/HLA-DPB120:01_BA.h5'
2023-03-29T20:17:32,491   adding 'mhcnuggets/saves/production/HLA-DQA101:01-DQB105:01_BA.h5'
2023-03-29T20:17:32,535   adding 'mhcnuggets/saves/production/HLA-DQA101:02-DQB105:01_BA.h5'
2023-03-29T20:17:32,579   adding 'mhcnuggets/saves/production/HLA-DQA101:02-DQB105:02_BA.h5'
2023-03-29T20:17:32,622   adding 'mhcnuggets/saves/production/HLA-DQA101:02-DQB106:02_BA.h5'
2023-03-29T20:17:32,666   adding 'mhcnuggets/saves/production/HLA-DQA101:02-DQB106:04_BA.h5'
2023-03-29T20:17:32,710   adding 'mhcnuggets/saves/production/HLA-DQA101:03-DQB106:01_BA.h5'
2023-03-29T20:17:32,754   adding 'mhcnuggets/saves/production/HLA-DQA101:03-DQB106:03_BA.h5'
2023-03-29T20:17:32,797   adding 'mhcnuggets/saves/production/HLA-DQA101:04-DQB105:03_BA.h5'
2023-03-29T20:17:32,841   adding 'mhcnuggets/saves/production/HLA-DQA102:01-DQB102:01_BA.h5'
2023-03-29T20:17:32,885   adding 'mhcnuggets/saves/production/HLA-DQA102:01-DQB102:02_BA.h5'
2023-03-29T20:17:32,928   adding 'mhcnuggets/saves/production/HLA-DQA102:01-DQB103:01_BA.h5'
2023-03-29T20:17:32,972   adding 'mhcnuggets/saves/production/HLA-DQA102:01-DQB103:03_BA.h5'
2023-03-29T20:17:33,016   adding 'mhcnuggets/saves/production/HLA-DQA102:01-DQB104:02_BA.h5'
2023-03-29T20:17:33,060   adding 'mhcnuggets/saves/production/HLA-DQA103:01-DQB102:01_BA.h5'
2023-03-29T20:17:33,103   adding 'mhcnuggets/saves/production/HLA-DQA103:01-DQB103:01_BA.h5'
2023-03-29T20:17:33,147   adding 'mhcnuggets/saves/production/HLA-DQA103:01-DQB103:02_BA.h5'
2023-03-29T20:17:33,192   adding 'mhcnuggets/saves/production/HLA-DQA103:01-DQB104:01_BA.h5'
2023-03-29T20:17:33,247   adding 'mhcnuggets/saves/production/HLA-DQA103:02-DQB103:01_BA.h5'
2023-03-29T20:17:33,481   adding 'mhcnuggets/saves/production/HLA-DQA103:02-DQB104:01_BA.h5'
2023-03-29T20:17:34,084   adding 'mhcnuggets/saves/production/HLA-DQA103:03-DQB104:02_BA.h5'
2023-03-29T20:17:34,132   adding 'mhcnuggets/saves/production/HLA-DQA104:01-DQB104:02_BA.h5'
2023-03-29T20:17:34,176   adding 'mhcnuggets/saves/production/HLA-DQA105:01-DQB102:01_BA.h5'
2023-03-29T20:17:34,220   adding 'mhcnuggets/saves/production/HLA-DQA105:01-DQB103:01_BA.h5'
2023-03-29T20:17:34,265   adding 'mhcnuggets/saves/production/HLA-DQA105:01-DQB103:02_BA.h5'
2023-03-29T20:17:34,309   adding 'mhcnuggets/saves/production/HLA-DQA105:01-DQB103:03_BA.h5'
2023-03-29T20:17:34,353   adding 'mhcnuggets/saves/production/HLA-DQA105:01-DQB104:02_BA.h5'
2023-03-29T20:17:34,397   adding 'mhcnuggets/saves/production/HLA-DQA105:05-DQB103:01_BA.h5'
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2023-03-29T20:17:34,485   adding 'mhcnuggets/saves/production/HLA-DQB102:01_BA.h5'
2023-03-29T20:17:34,529   adding 'mhcnuggets/saves/production/HLA-DQB102:02_BA.h5'
2023-03-29T20:17:34,573   adding 'mhcnuggets/saves/production/HLA-DQB103:01_BA.h5'
2023-03-29T20:17:34,617   adding 'mhcnuggets/saves/production/HLA-DQB103:02_BA.h5'
2023-03-29T20:17:34,661   adding 'mhcnuggets/saves/production/HLA-DQB103:19_BA.h5'
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2023-03-29T20:17:37,610   adding 'mhcnuggets/saves/production/HLA-E01:03_BA.h5'
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2023-03-29T20:17:38,090   adding 'mhcnuggets/saves/production/Mamu-A22:01_BA.h5'
2023-03-29T20:17:38,134   adding 'mhcnuggets/saves/production/Mamu-A26:01_BA.h5'
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2023-03-29T20:17:38,222   adding 'mhcnuggets/saves/production/Mamu-B03:01_BA.h5'
2023-03-29T20:17:38,266   adding 'mhcnuggets/saves/production/Mamu-B08:01_BA.h5'
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2023-03-29T20:17:38,663   adding 'mhcnuggets/saves/production/Mamu-DRB01_BA.h5'
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2023-03-29T20:17:38,794   adding 'mhcnuggets/saves/production/Patr-A03:01_BA.h5'
2023-03-29T20:17:38,838   adding 'mhcnuggets/saves/production/Patr-A04:01_BA.h5'
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2023-03-29T20:17:38,925   adding 'mhcnuggets/saves/production/Patr-A07:01_BA.h5'
2023-03-29T20:17:38,969   adding 'mhcnuggets/saves/production/Patr-A09:01_BA.h5'
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2023-03-29T20:17:39,055   adding 'mhcnuggets/saves/production/Patr-B09:01_BA.h5'
2023-03-29T20:17:39,099   adding 'mhcnuggets/saves/production/Patr-B13:01_BA.h5'
2023-03-29T20:17:39,143   adding 'mhcnuggets/saves/production/Patr-B24:01_BA.h5'
2023-03-29T20:17:39,187   adding 'mhcnuggets/saves/production/SLA-104:01_BA.h5'
2023-03-29T20:17:39,192   adding 'mhcnuggets/saves/production/__init__.py'
2023-03-29T20:17:39,235   adding 'mhcnuggets/saves/test/HLA-A01:01_test_model.h5'
2023-03-29T20:17:39,241   adding 'mhcnuggets/saves/test/HLA-A01:01_test_model.predictions'
2023-03-29T20:17:39,243   adding 'mhcnuggets/saves/test/__init__.py'
2023-03-29T20:17:39,247   adding 'mhcnuggets/src/__init__.py'
2023-03-29T20:17:39,250   adding 'mhcnuggets/src/aa_embeddings.py'
2023-03-29T20:17:39,254   adding 'mhcnuggets/src/calculate_mhc_relations.py'
2023-03-29T20:17:39,259   adding 'mhcnuggets/src/dataset.py'
2023-03-29T20:17:39,263   adding 'mhcnuggets/src/evaluate.py'
2023-03-29T20:17:39,267   adding 'mhcnuggets/src/evaluate_all.py'
2023-03-29T20:17:39,271   adding 'mhcnuggets/src/extract_pep_sequences.py'
2023-03-29T20:17:39,275   adding 'mhcnuggets/src/find_closest_mhcI.py'
2023-03-29T20:17:39,279   adding 'mhcnuggets/src/find_closest_mhcII.py'
2023-03-29T20:17:39,283   adding 'mhcnuggets/src/get_candidate_neoantigens.py'
2023-03-29T20:17:39,286   adding 'mhcnuggets/src/models.py'
2023-03-29T20:17:39,290   adding 'mhcnuggets/src/predict.py'
2023-03-29T20:17:39,294   adding 'mhcnuggets/src/predict_from_vcf.py'
2023-03-29T20:17:39,305   adding 'mhcnuggets/src/supertypes.py'
2023-03-29T20:17:39,310   adding 'mhcnuggets/src/train.py'
2023-03-29T20:17:39,316   adding 'mhcnuggets-2.4.1.dist-info/LICENSE'
2023-03-29T20:17:39,318   adding 'mhcnuggets-2.4.1.dist-info/METADATA'
2023-03-29T20:17:39,320   adding 'mhcnuggets-2.4.1.dist-info/WHEEL'
2023-03-29T20:17:39,322   adding 'mhcnuggets-2.4.1.dist-info/top_level.txt'
2023-03-29T20:17:39,324   adding 'mhcnuggets-2.4.1.dist-info/zip-safe'
2023-03-29T20:17:39,339   adding 'mhcnuggets-2.4.1.dist-info/RECORD'
2023-03-29T20:17:39,686   removing build/bdist.linux-armv7l/wheel
2023-03-29T20:17:40,286   Building wheel for mhcnuggets (setup.py): finished with status 'done'
2023-03-29T20:17:43,478   Created wheel for mhcnuggets: filename=mhcnuggets-2.4.1-py3-none-any.whl size=108791219 sha256=dc3badbfa0d3c82438a07ebb664c6e868d25f5662c10d092d5345c3b376cb709
2023-03-29T20:17:43,481   Stored in directory: /tmp/pip-ephem-wheel-cache-i5_9ea5c/wheels/b3/98/e0/09803de54be84fae692d3773523a9b339bf47fbadb67da89eb
2023-03-29T20:17:43,658 Successfully built mhcnuggets
2023-03-29T20:17:50,923 Removed build tracker: '/tmp/pip-build-tracker-1niffz0b'