2023-04-04T08:43:14,990 Created temporary directory: /tmp/pip-ephem-wheel-cache-zp19t3gv
2023-04-04T08:43:14,996 Created temporary directory: /tmp/pip-build-tracker-ti28q2h2
2023-04-04T08:43:14,997 Initialized build tracking at /tmp/pip-build-tracker-ti28q2h2
2023-04-04T08:43:14,997 Created build tracker: /tmp/pip-build-tracker-ti28q2h2
2023-04-04T08:43:14,997 Entered build tracker: /tmp/pip-build-tracker-ti28q2h2
2023-04-04T08:43:14,999 Created temporary directory: /tmp/pip-wheel-gi5g3_bo
2023-04-04T08:43:15,008 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-04-04T08:43:15,015 Created temporary directory: /tmp/pip-ephem-wheel-cache-xipmsnss
2023-04-04T08:43:15,069 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-04-04T08:43:15,076 2 location(s) to search for versions of biobb-gromacs:
2023-04-04T08:43:15,076 * https://pypi.org/simple/biobb-gromacs/
2023-04-04T08:43:15,076 * https://www.piwheels.org/simple/biobb-gromacs/
2023-04-04T08:43:15,077 Fetching project page and analyzing links: https://pypi.org/simple/biobb-gromacs/
2023-04-04T08:43:15,078 Getting page https://pypi.org/simple/biobb-gromacs/
2023-04-04T08:43:15,082 Found index url https://pypi.org/simple
2023-04-04T08:43:15,315 Fetched page https://pypi.org/simple/biobb-gromacs/ as application/vnd.pypi.simple.v1+json
2023-04-04T08:43:15,320   Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/86/a0/f92aeb96c32f5abc4e8642e95ab8248f3105dfde5dd0e89435ae70448607/biobb_gromacs-3.8.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7)
2023-04-04T08:43:15,322   Found link https://files.pythonhosted.org/packages/2a/4b/be17e7b27a96404d0f87426fbabd98dde1c97a7b8a1c54d041066c23ccf4/biobb_gromacs-3.8.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7), version: 3.8.0
2023-04-04T08:43:15,323   Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/2e/0e/747bdb6621a1a44e3f02427166092650a9a68398395ca67f2937b15d7f41/biobb_gromacs-3.8.1-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7)
2023-04-04T08:43:15,324   Found link https://files.pythonhosted.org/packages/ea/60/3112f633e90ddc93f3db9c2f4e9e4e3eb1100e3a09c87afbfc7abda281a8/biobb_gromacs-3.8.1.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7), version: 3.8.1
2023-04-04T08:43:15,325   Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/05/a4/d455ddd59bf78a5737d5d259f73dfd02c519a3e283039a8e017a09f1cfa0/biobb_gromacs-3.9.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<3.10)
2023-04-04T08:43:15,327   Found link https://files.pythonhosted.org/packages/76/19/78c5eac01654d173445bcd5a5ecb97960da2fbf7f017488890aafd1dce89/biobb_gromacs-3.9.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<3.10), version: 3.9.0
2023-04-04T08:43:15,328   Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/21/48/4004837530aeaa5b0355627b3d5bde2d1ecaec3f03e10c6251df81d26543/biobb_gromacs-4.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<=3.10)
2023-04-04T08:43:15,329   Found link https://files.pythonhosted.org/packages/35/4e/cb24d7828d758e84bc9b4264303238d2372c7daf6081a88efce3e7e0f316/biobb_gromacs-4.0.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<=3.10), version: 4.0.0
2023-04-04T08:43:15,330 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-gromacs/
2023-04-04T08:43:15,331 Getting page https://www.piwheels.org/simple/biobb-gromacs/
2023-04-04T08:43:15,333 Found index url https://www.piwheels.org/simple
2023-04-04T08:43:15,543 Fetched page https://www.piwheels.org/simple/biobb-gromacs/ as text/html
2023-04-04T08:43:15,548   Skipping link: No binaries permitted for biobb-gromacs: https://www.piwheels.org/simple/biobb-gromacs/biobb_gromacs-3.9.0-py3-none-any.whl#sha256=e1c466d044d7e03844c9ce91c981d715f42706f993e4307cd4a2c3fefe057200 (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.7,<3.10)
2023-04-04T08:43:15,548   Skipping link: No binaries permitted for biobb-gromacs: https://www.piwheels.org/simple/biobb-gromacs/biobb_gromacs-3.8.1-py3-none-any.whl#sha256=dc62def4ee04dacfa7a29ad52d42e1fa4c563b5ce844e1ae8f55221271bf2382 (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.7)
2023-04-04T08:43:15,549   Skipping link: No binaries permitted for biobb-gromacs: https://www.piwheels.org/simple/biobb-gromacs/biobb_gromacs-3.8.0-py3-none-any.whl#sha256=7add16113788a2a933020f11c3ee9750cca1751c59ff4805bf3cc10ad2088928 (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.7)
2023-04-04T08:43:15,549 Skipping link: not a file: https://www.piwheels.org/simple/biobb-gromacs/
2023-04-04T08:43:15,550 Skipping link: not a file: https://pypi.org/simple/biobb-gromacs/
2023-04-04T08:43:15,584 Given no hashes to check 1 links for project 'biobb-gromacs': discarding no candidates
2023-04-04T08:43:15,613 Collecting biobb-gromacs==4.0.0
2023-04-04T08:43:15,618   Created temporary directory: /tmp/pip-unpack-yiiwck9j
2023-04-04T08:43:15,851   Downloading biobb_gromacs-4.0.0.tar.gz (27 kB)
2023-04-04T08:43:16,015   Added biobb-gromacs==4.0.0 from https://files.pythonhosted.org/packages/35/4e/cb24d7828d758e84bc9b4264303238d2372c7daf6081a88efce3e7e0f316/biobb_gromacs-4.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-ti28q2h2'
2023-04-04T08:43:16,018   Running setup.py (path:/tmp/pip-wheel-gi5g3_bo/biobb-gromacs_c3b3be0b67a449d8903e67a162b10558/setup.py) egg_info for package biobb-gromacs
2023-04-04T08:43:16,020   Created temporary directory: /tmp/pip-pip-egg-info-2xvohqym
2023-04-04T08:43:16,021   Preparing metadata (setup.py): started
2023-04-04T08:43:16,023   Running command python setup.py egg_info
2023-04-04T08:43:17,534   running egg_info
2023-04-04T08:43:17,537   creating /tmp/pip-pip-egg-info-2xvohqym/biobb_gromacs.egg-info
2023-04-04T08:43:17,601   writing /tmp/pip-pip-egg-info-2xvohqym/biobb_gromacs.egg-info/PKG-INFO
2023-04-04T08:43:17,606   writing dependency_links to /tmp/pip-pip-egg-info-2xvohqym/biobb_gromacs.egg-info/dependency_links.txt
2023-04-04T08:43:17,611   writing entry points to /tmp/pip-pip-egg-info-2xvohqym/biobb_gromacs.egg-info/entry_points.txt
2023-04-04T08:43:17,615   writing requirements to /tmp/pip-pip-egg-info-2xvohqym/biobb_gromacs.egg-info/requires.txt
2023-04-04T08:43:17,618   writing top-level names to /tmp/pip-pip-egg-info-2xvohqym/biobb_gromacs.egg-info/top_level.txt
2023-04-04T08:43:17,621   writing manifest file '/tmp/pip-pip-egg-info-2xvohqym/biobb_gromacs.egg-info/SOURCES.txt'
2023-04-04T08:43:17,827   reading manifest file '/tmp/pip-pip-egg-info-2xvohqym/biobb_gromacs.egg-info/SOURCES.txt'
2023-04-04T08:43:17,831   adding license file 'LICENSE'
2023-04-04T08:43:17,838   writing manifest file '/tmp/pip-pip-egg-info-2xvohqym/biobb_gromacs.egg-info/SOURCES.txt'
2023-04-04T08:43:17,956   Preparing metadata (setup.py): finished with status 'done'
2023-04-04T08:43:17,970   Source in /tmp/pip-wheel-gi5g3_bo/biobb-gromacs_c3b3be0b67a449d8903e67a162b10558 has version 4.0.0, which satisfies requirement biobb-gromacs==4.0.0 from https://files.pythonhosted.org/packages/35/4e/cb24d7828d758e84bc9b4264303238d2372c7daf6081a88efce3e7e0f316/biobb_gromacs-4.0.0.tar.gz
2023-04-04T08:43:17,972   Removed biobb-gromacs==4.0.0 from https://files.pythonhosted.org/packages/35/4e/cb24d7828d758e84bc9b4264303238d2372c7daf6081a88efce3e7e0f316/biobb_gromacs-4.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-ti28q2h2'
2023-04-04T08:43:17,988 Created temporary directory: /tmp/pip-unpack-nogs973r
2023-04-04T08:43:17,990 Building wheels for collected packages: biobb-gromacs
2023-04-04T08:43:17,999   Created temporary directory: /tmp/pip-wheel-7lcioa4g
2023-04-04T08:43:18,000   Building wheel for biobb-gromacs (setup.py): started
2023-04-04T08:43:18,002   Destination directory: /tmp/pip-wheel-7lcioa4g
2023-04-04T08:43:18,002   Running command python setup.py bdist_wheel
2023-04-04T08:43:20,090   running bdist_wheel
2023-04-04T08:43:20,855   running build
2023-04-04T08:43:20,855   running build_py
2023-04-04T08:43:20,930   creating build
2023-04-04T08:43:20,931   creating build/lib
2023-04-04T08:43:20,932   creating build/lib/biobb_gromacs
2023-04-04T08:43:20,935   copying biobb_gromacs/__init__.py -> build/lib/biobb_gromacs
2023-04-04T08:43:20,941   creating build/lib/biobb_gromacs/gromacs_extra
2023-04-04T08:43:20,943   copying biobb_gromacs/gromacs_extra/ndx2resttop.py -> build/lib/biobb_gromacs/gromacs_extra
2023-04-04T08:43:20,948   copying biobb_gromacs/gromacs_extra/append_ligand.py -> build/lib/biobb_gromacs/gromacs_extra
2023-04-04T08:43:20,953   copying biobb_gromacs/gromacs_extra/__init__.py -> build/lib/biobb_gromacs/gromacs_extra
2023-04-04T08:43:20,957   creating build/lib/biobb_gromacs/test
2023-04-04T08:43:20,959   copying biobb_gromacs/test/__init__.py -> build/lib/biobb_gromacs/test
2023-04-04T08:43:20,965   creating build/lib/biobb_gromacs/gromacs
2023-04-04T08:43:20,967   copying biobb_gromacs/gromacs/genrestr.py -> build/lib/biobb_gromacs/gromacs
2023-04-04T08:43:20,971   copying biobb_gromacs/gromacs/solvate.py -> build/lib/biobb_gromacs/gromacs
2023-04-04T08:43:20,976   copying biobb_gromacs/gromacs/trjcat.py -> build/lib/biobb_gromacs/gromacs
2023-04-04T08:43:20,980   copying biobb_gromacs/gromacs/pdb2gmx.py -> build/lib/biobb_gromacs/gromacs
2023-04-04T08:43:20,985   copying biobb_gromacs/gromacs/common.py -> build/lib/biobb_gromacs/gromacs
2023-04-04T08:43:20,989   copying biobb_gromacs/gromacs/gmxselect.py -> build/lib/biobb_gromacs/gromacs
2023-04-04T08:43:20,994   copying biobb_gromacs/gromacs/mdrun.py -> build/lib/biobb_gromacs/gromacs
2023-04-04T08:43:20,998   copying biobb_gromacs/gromacs/grompp_mdrun.py -> build/lib/biobb_gromacs/gromacs
2023-04-04T08:43:21,004   copying biobb_gromacs/gromacs/grompp.py -> build/lib/biobb_gromacs/gromacs
2023-04-04T08:43:21,009   copying biobb_gromacs/gromacs/editconf.py -> build/lib/biobb_gromacs/gromacs
2023-04-04T08:43:21,015   copying biobb_gromacs/gromacs/genion.py -> build/lib/biobb_gromacs/gromacs
2023-04-04T08:43:21,020   copying biobb_gromacs/gromacs/__init__.py -> build/lib/biobb_gromacs/gromacs
2023-04-04T08:43:21,024   copying biobb_gromacs/gromacs/make_ndx.py -> build/lib/biobb_gromacs/gromacs
2023-04-04T08:43:21,114   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2023-04-04T08:43:21,115     setuptools.SetuptoolsDeprecationWarning,
2023-04-04T08:43:21,184   installing to build/bdist.linux-armv7l/wheel
2023-04-04T08:43:21,185   running install
2023-04-04T08:43:21,246   running install_lib
2023-04-04T08:43:21,316   creating build/bdist.linux-armv7l
2023-04-04T08:43:21,318   creating build/bdist.linux-armv7l/wheel
2023-04-04T08:43:21,322   creating build/bdist.linux-armv7l/wheel/biobb_gromacs
2023-04-04T08:43:21,325   creating build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2023-04-04T08:43:21,328   copying build/lib/biobb_gromacs/gromacs_extra/ndx2resttop.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2023-04-04T08:43:21,334   copying build/lib/biobb_gromacs/gromacs_extra/append_ligand.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2023-04-04T08:43:21,339   copying build/lib/biobb_gromacs/gromacs_extra/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2023-04-04T08:43:21,345   creating build/bdist.linux-armv7l/wheel/biobb_gromacs/test
2023-04-04T08:43:21,348   copying build/lib/biobb_gromacs/test/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/test
2023-04-04T08:43:21,355   creating build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-04-04T08:43:21,357   copying build/lib/biobb_gromacs/gromacs/genrestr.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-04-04T08:43:21,362   copying build/lib/biobb_gromacs/gromacs/solvate.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-04-04T08:43:21,366   copying build/lib/biobb_gromacs/gromacs/trjcat.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-04-04T08:43:21,371   copying build/lib/biobb_gromacs/gromacs/pdb2gmx.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-04-04T08:43:21,375   copying build/lib/biobb_gromacs/gromacs/common.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-04-04T08:43:21,380   copying build/lib/biobb_gromacs/gromacs/gmxselect.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-04-04T08:43:21,384   copying build/lib/biobb_gromacs/gromacs/mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-04-04T08:43:21,389   copying build/lib/biobb_gromacs/gromacs/grompp_mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-04-04T08:43:21,394   copying build/lib/biobb_gromacs/gromacs/grompp.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-04-04T08:43:21,400   copying build/lib/biobb_gromacs/gromacs/editconf.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-04-04T08:43:21,404   copying build/lib/biobb_gromacs/gromacs/genion.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-04-04T08:43:21,409   copying build/lib/biobb_gromacs/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-04-04T08:43:21,413   copying build/lib/biobb_gromacs/gromacs/make_ndx.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-04-04T08:43:21,417   copying build/lib/biobb_gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs
2023-04-04T08:43:21,420   running install_egg_info
2023-04-04T08:43:21,582   running egg_info
2023-04-04T08:43:21,646   writing biobb_gromacs.egg-info/PKG-INFO
2023-04-04T08:43:21,650   writing dependency_links to biobb_gromacs.egg-info/dependency_links.txt
2023-04-04T08:43:21,656   writing entry points to biobb_gromacs.egg-info/entry_points.txt
2023-04-04T08:43:21,658   writing requirements to biobb_gromacs.egg-info/requires.txt
2023-04-04T08:43:21,661   writing top-level names to biobb_gromacs.egg-info/top_level.txt
2023-04-04T08:43:21,734   reading manifest file 'biobb_gromacs.egg-info/SOURCES.txt'
2023-04-04T08:43:21,739   adding license file 'LICENSE'
2023-04-04T08:43:21,746   writing manifest file 'biobb_gromacs.egg-info/SOURCES.txt'
2023-04-04T08:43:21,749   Copying biobb_gromacs.egg-info to build/bdist.linux-armv7l/wheel/biobb_gromacs-4.0.0-py3.7.egg-info
2023-04-04T08:43:21,773   running install_scripts
2023-04-04T08:43:21,807   creating build/bdist.linux-armv7l/wheel/biobb_gromacs-4.0.0.dist-info/WHEEL
2023-04-04T08:43:21,813   creating '/tmp/pip-wheel-7lcioa4g/biobb_gromacs-4.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-04-04T08:43:21,818   adding 'biobb_gromacs/__init__.py'
2023-04-04T08:43:21,822   adding 'biobb_gromacs/gromacs/__init__.py'
2023-04-04T08:43:21,826   adding 'biobb_gromacs/gromacs/common.py'
2023-04-04T08:43:21,830   adding 'biobb_gromacs/gromacs/editconf.py'
2023-04-04T08:43:21,834   adding 'biobb_gromacs/gromacs/genion.py'
2023-04-04T08:43:21,838   adding 'biobb_gromacs/gromacs/genrestr.py'
2023-04-04T08:43:21,842   adding 'biobb_gromacs/gromacs/gmxselect.py'
2023-04-04T08:43:21,847   adding 'biobb_gromacs/gromacs/grompp.py'
2023-04-04T08:43:21,852   adding 'biobb_gromacs/gromacs/grompp_mdrun.py'
2023-04-04T08:43:21,856   adding 'biobb_gromacs/gromacs/make_ndx.py'
2023-04-04T08:43:21,861   adding 'biobb_gromacs/gromacs/mdrun.py'
2023-04-04T08:43:21,865   adding 'biobb_gromacs/gromacs/pdb2gmx.py'
2023-04-04T08:43:21,869   adding 'biobb_gromacs/gromacs/solvate.py'
2023-04-04T08:43:21,873   adding 'biobb_gromacs/gromacs/trjcat.py'
2023-04-04T08:43:21,877   adding 'biobb_gromacs/gromacs_extra/__init__.py'
2023-04-04T08:43:21,881   adding 'biobb_gromacs/gromacs_extra/append_ligand.py'
2023-04-04T08:43:21,885   adding 'biobb_gromacs/gromacs_extra/ndx2resttop.py'
2023-04-04T08:43:21,888   adding 'biobb_gromacs/test/__init__.py'
2023-04-04T08:43:21,895   adding 'biobb_gromacs-4.0.0.dist-info/LICENSE'
2023-04-04T08:43:21,899   adding 'biobb_gromacs-4.0.0.dist-info/METADATA'
2023-04-04T08:43:21,901   adding 'biobb_gromacs-4.0.0.dist-info/WHEEL'
2023-04-04T08:43:21,903   adding 'biobb_gromacs-4.0.0.dist-info/entry_points.txt'
2023-04-04T08:43:21,905   adding 'biobb_gromacs-4.0.0.dist-info/top_level.txt'
2023-04-04T08:43:21,907   adding 'biobb_gromacs-4.0.0.dist-info/RECORD'
2023-04-04T08:43:21,912   removing build/bdist.linux-armv7l/wheel
2023-04-04T08:43:22,096   Building wheel for biobb-gromacs (setup.py): finished with status 'done'
2023-04-04T08:43:22,105   Created wheel for biobb-gromacs: filename=biobb_gromacs-4.0.0-py3-none-any.whl size=53374 sha256=00be99495c4d1a3f70e885bd0cb38842008213f1dfc171b1fbfa7d151023622b
2023-04-04T08:43:22,107   Stored in directory: /tmp/pip-ephem-wheel-cache-xipmsnss/wheels/ec/23/1d/1a20abad2005f31d6fe741f39a76185485cd3b82645c2b0835
2023-04-04T08:43:22,136 Successfully built biobb-gromacs
2023-04-04T08:43:22,147 Removed build tracker: '/tmp/pip-build-tracker-ti28q2h2'