2023-04-05T17:00:08,156 Created temporary directory: /tmp/pip-ephem-wheel-cache-90ofopm0 2023-04-05T17:00:08,161 Created temporary directory: /tmp/pip-build-tracker-bw898jdb 2023-04-05T17:00:08,162 Initialized build tracking at /tmp/pip-build-tracker-bw898jdb 2023-04-05T17:00:08,163 Created build tracker: /tmp/pip-build-tracker-bw898jdb 2023-04-05T17:00:08,163 Entered build tracker: /tmp/pip-build-tracker-bw898jdb 2023-04-05T17:00:08,164 Created temporary directory: /tmp/pip-wheel-uoskzsp6 2023-04-05T17:00:08,175 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-04-05T17:00:08,180 Created temporary directory: /tmp/pip-ephem-wheel-cache-973tkrxv 2023-04-05T17:00:08,234 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-04-05T17:00:08,241 2 location(s) to search for versions of biobb-adapters: 2023-04-05T17:00:08,241 * https://pypi.org/simple/biobb-adapters/ 2023-04-05T17:00:08,241 * https://www.piwheels.org/simple/biobb-adapters/ 2023-04-05T17:00:08,242 Fetching project page and analyzing links: https://pypi.org/simple/biobb-adapters/ 2023-04-05T17:00:08,243 Getting page https://pypi.org/simple/biobb-adapters/ 2023-04-05T17:00:08,246 Found index url https://pypi.org/simple 2023-04-05T17:00:08,444 Fetched page https://pypi.org/simple/biobb-adapters/ as application/vnd.pypi.simple.v1+json 2023-04-05T17:00:08,455 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/6e/48/fa9f1781406343cda29442d0ad67f8fa113f3661c8a62ae599a225e559d6/biobb_adapters-0.0.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2023-04-05T17:00:08,457 Found link https://files.pythonhosted.org/packages/ea/47/5763ae5620f550174e112f8231676887f996c7c7bdacb854a46860abf447/biobb_adapters-0.0.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.0.1 2023-04-05T17:00:08,458 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/0f/61/dc32b2bcfb9b1d1c8d79dc96d32671a901cd83acd1b6184772cdef43c920/biobb_adapters-0.1.2-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2023-04-05T17:00:08,459 Found link https://files.pythonhosted.org/packages/3e/05/6809d3f7ea93db6f0bceb198539299a5e33e6315b666d04e6e57568e7f11/biobb_adapters-0.1.2.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.2 2023-04-05T17:00:08,460 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/d8/34/06237256a2caa148311d8093a3f71206668f61b7cd20799b8ecf6563cbce/biobb_adapters-0.1.3-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2023-04-05T17:00:08,461 Found link https://files.pythonhosted.org/packages/cf/8d/f1da413a4007f55934dff4375e5d87d0b0f8fb7d84c1062157948f4392c9/biobb_adapters-0.1.3.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.3 2023-04-05T17:00:08,462 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/10/82/a1f366057fb6d101117ace12799cda70ce00ea9c76277d2c8e08e2fafc14/biobb_adapters-0.1.4-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2023-04-05T17:00:08,463 Found link https://files.pythonhosted.org/packages/fc/71/7d6174c4c56a7b38322a5a99c1d72c4f6b1115106508a887fbbda63e30d4/biobb_adapters-0.1.4.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.4 2023-04-05T17:00:08,464 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/af/fd/491ede12a15215794041755b568998a5ff3e8c2e1e8df7b5cec044dcdc6e/biobb_adapters-3.6.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2023-04-05T17:00:08,465 Found link https://files.pythonhosted.org/packages/d4/8e/89622b96a2f6255ba0313fb1eaf264343e3c7c1c2e2bcbb0544b990d32bc/biobb_adapters-3.6.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.6.0 2023-04-05T17:00:08,466 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/76/dc/444595a3497f5b5e9220cfb8c683abb044a799aa63249e69fa1c8c46c51b/biobb_adapters-3.6.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2023-04-05T17:00:08,467 Found link https://files.pythonhosted.org/packages/1c/c1/1cb78ece834741799903f6eac3dd0035297ff1c7cbb75f391ec9d5edd95b/biobb_adapters-3.6.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.6.1 2023-04-05T17:00:08,468 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/ba/21/064ebc456bb946b0e94829c80dfd6adc302bc65cf2d4eb774a5a1da47d90/biobb_adapters-3.7.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2023-04-05T17:00:08,469 Found link https://files.pythonhosted.org/packages/8d/bd/df127a6c4c110ffd8e6cf6a5a186fb0ddd180f7fd15f3283f5588834a605/biobb_adapters-3.7.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.7.0 2023-04-05T17:00:08,470 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/48/da/7e3fc1435ec04371f16bcc6c8d39f0b4c5c74195d1847a07862f23aa5c59/biobb_adapters-3.8.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7) 2023-04-05T17:00:08,471 Found link https://files.pythonhosted.org/packages/9c/cc/757e3378f55f0e6de3c20e924e551493315d7be28a5c304397faf993bab3/biobb_adapters-3.8.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7), version: 3.8.0 2023-04-05T17:00:08,472 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/cb/e7/5a1b54a0aecde3bf2fb8f891afba3f75349a0d2b0941b7984d15b06cf0e5/biobb_adapters-3.8.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7) 2023-04-05T17:00:08,473 Found link https://files.pythonhosted.org/packages/50/7a/7ce78a35dfc275fa95aaa96e3f52ff9bb12ccb5d6c47697439aa4ea737ae/biobb_adapters-3.8.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7), version: 3.8.1 2023-04-05T17:00:08,474 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/8b/ae/17f6e16c46b7e6ef350f695a2b4403b28df876ec5ffb821925132737dc45/biobb_adapters-4.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7,<=3.10) 2023-04-05T17:00:08,475 Found link https://files.pythonhosted.org/packages/b9/82/2aceba1ad4acef1ed6b25f0ca5cfad7d7d313b9399a6a7262ff015e9d825/biobb_adapters-4.0.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7,<=3.10), version: 4.0.0 2023-04-05T17:00:08,476 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-adapters/ 2023-04-05T17:00:08,477 Getting page https://www.piwheels.org/simple/biobb-adapters/ 2023-04-05T17:00:08,479 Found index url https://www.piwheels.org/simple 2023-04-05T17:00:08,700 Fetched page https://www.piwheels.org/simple/biobb-adapters/ as text/html 2023-04-05T17:00:08,709 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-3.8.1-py3-none-any.whl#sha256=7a3438d481b9100a9515c17f6a2c639a03c777ef4bfcf0cf98a0402e52e7361e (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3.7) 2023-04-05T17:00:08,710 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-3.8.0-py3-none-any.whl#sha256=b292fb32ccd27073b7e6361b3aba9b76a5c482a106f56dab11448ab7f34019e2 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3.7) 2023-04-05T17:00:08,710 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-3.7.0-py3-none-any.whl#sha256=87c2d259b7048ea5f5b42b1af9b4ec0ebeea79a3bf75d12b74e150a6912939ec (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2023-04-05T17:00:08,711 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-3.6.1-py3-none-any.whl#sha256=8260317060e532fea600980ac833bd79b07ac5df283349b573221a8a7c732506 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2023-04-05T17:00:08,711 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-3.6.0-py3-none-any.whl#sha256=deec3d977dc1d2088be8a28197d1bd98650e1baba87d45b5d2ef7fed41fa671c (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2023-04-05T17:00:08,712 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.4-py3-none-any.whl#sha256=f26f2aaffd33d22a606ba569276dcfd04bce56a2e8ab8e382acc2646b01f3a85 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2023-04-05T17:00:08,712 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.3-py3-none-any.whl#sha256=3d9b62abc78a28b54c050954fd6ee0e3a1fed164a3d3b8d6eadadd0b25b775d2 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2023-04-05T17:00:08,713 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.2-py3-none-any.whl#sha256=0acb06de199e0ac06376a0ffe5e2071445ee7a36fce431a17edc27fdf218492d (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2023-04-05T17:00:08,713 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-0.0.1-py3-none-any.whl#sha256=cf710e8eb6bc1256248c69baea53ce2727fc707766e31bcf25fc9b9cfe66745a (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2023-04-05T17:00:08,714 Skipping link: not a file: https://www.piwheels.org/simple/biobb-adapters/ 2023-04-05T17:00:08,714 Skipping link: not a file: https://pypi.org/simple/biobb-adapters/ 2023-04-05T17:00:08,750 Given no hashes to check 1 links for project 'biobb-adapters': discarding no candidates 2023-04-05T17:00:08,781 Collecting biobb-adapters==4.0.0 2023-04-05T17:00:08,785 Created temporary directory: /tmp/pip-unpack-ra_9kqmv 2023-04-05T17:00:09,481 Downloading biobb_adapters-4.0.0.tar.gz (39.4 MB) 2023-04-05T17:00:41,482 Added biobb-adapters==4.0.0 from https://files.pythonhosted.org/packages/b9/82/2aceba1ad4acef1ed6b25f0ca5cfad7d7d313b9399a6a7262ff015e9d825/biobb_adapters-4.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-bw898jdb' 2023-04-05T17:00:41,488 Running setup.py (path:/tmp/pip-wheel-uoskzsp6/biobb-adapters_7388f14033bb4c61878cb7615d3c2007/setup.py) egg_info for package biobb-adapters 2023-04-05T17:00:41,489 Created temporary directory: /tmp/pip-pip-egg-info-mb01tbx0 2023-04-05T17:00:41,490 Preparing metadata (setup.py): started 2023-04-05T17:00:41,492 Running command python setup.py egg_info 2023-04-05T17:00:42,904 Warning: 'classifiers' should be a list, got type 'tuple' 2023-04-05T17:00:43,231 running egg_info 2023-04-05T17:00:43,234 creating /tmp/pip-pip-egg-info-mb01tbx0/biobb_adapters.egg-info 2023-04-05T17:00:43,325 writing /tmp/pip-pip-egg-info-mb01tbx0/biobb_adapters.egg-info/PKG-INFO 2023-04-05T17:00:43,330 writing dependency_links to /tmp/pip-pip-egg-info-mb01tbx0/biobb_adapters.egg-info/dependency_links.txt 2023-04-05T17:00:43,335 writing requirements to /tmp/pip-pip-egg-info-mb01tbx0/biobb_adapters.egg-info/requires.txt 2023-04-05T17:00:43,337 writing top-level names to /tmp/pip-pip-egg-info-mb01tbx0/biobb_adapters.egg-info/top_level.txt 2023-04-05T17:00:43,339 writing manifest file '/tmp/pip-pip-egg-info-mb01tbx0/biobb_adapters.egg-info/SOURCES.txt' 2023-04-05T17:00:43,706 reading manifest file '/tmp/pip-pip-egg-info-mb01tbx0/biobb_adapters.egg-info/SOURCES.txt' 2023-04-05T17:00:43,710 reading manifest template 'MANIFEST.in' 2023-04-05T17:00:44,118 adding license file 'LICENSE' 2023-04-05T17:00:44,185 writing manifest file '/tmp/pip-pip-egg-info-mb01tbx0/biobb_adapters.egg-info/SOURCES.txt' 2023-04-05T17:00:44,305 Preparing metadata (setup.py): finished with status 'done' 2023-04-05T17:00:44,318 Source in /tmp/pip-wheel-uoskzsp6/biobb-adapters_7388f14033bb4c61878cb7615d3c2007 has version 4.0.0, which satisfies requirement biobb-adapters==4.0.0 from https://files.pythonhosted.org/packages/b9/82/2aceba1ad4acef1ed6b25f0ca5cfad7d7d313b9399a6a7262ff015e9d825/biobb_adapters-4.0.0.tar.gz 2023-04-05T17:00:44,320 Removed biobb-adapters==4.0.0 from https://files.pythonhosted.org/packages/b9/82/2aceba1ad4acef1ed6b25f0ca5cfad7d7d313b9399a6a7262ff015e9d825/biobb_adapters-4.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-bw898jdb' 2023-04-05T17:00:44,337 Created temporary directory: /tmp/pip-unpack-f4z07zu0 2023-04-05T17:00:44,338 Building wheels for collected packages: biobb-adapters 2023-04-05T17:00:44,347 Created temporary directory: /tmp/pip-wheel-t4k8un2a 2023-04-05T17:00:44,348 Building wheel for biobb-adapters (setup.py): started 2023-04-05T17:00:44,350 Destination directory: /tmp/pip-wheel-t4k8un2a 2023-04-05T17:00:44,350 Running command python setup.py bdist_wheel 2023-04-05T17:00:45,676 Warning: 'classifiers' should be a list, got type 'tuple' 2023-04-05T17:00:46,661 running bdist_wheel 2023-04-05T17:00:46,941 running build 2023-04-05T17:00:46,942 running build_py 2023-04-05T17:00:47,040 creating build 2023-04-05T17:00:47,041 creating build/lib 2023-04-05T17:00:47,042 creating build/lib/biobb_adapters 2023-04-05T17:00:47,045 copying biobb_adapters/__init__.py -> build/lib/biobb_adapters 2023-04-05T17:00:47,049 creating build/lib/biobb_adapters/pycompss 2023-04-05T17:00:47,051 copying biobb_adapters/pycompss/__init__.py -> build/lib/biobb_adapters/pycompss 2023-04-05T17:00:47,055 creating build/lib/biobb_adapters/pycompss/biobb_analysis 2023-04-05T17:00:47,057 copying biobb_adapters/pycompss/biobb_analysis/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis 2023-04-05T17:00:47,061 creating build/lib/biobb_adapters/pycompss/biobb_pmx 2023-04-05T17:00:47,063 copying biobb_adapters/pycompss/biobb_pmx/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_pmx 2023-04-05T17:00:47,067 creating build/lib/biobb_adapters/pycompss/biobb_vs 2023-04-05T17:00:47,069 copying biobb_adapters/pycompss/biobb_vs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs 2023-04-05T17:00:47,073 creating build/lib/biobb_adapters/pycompss/biobb_cmip 2023-04-05T17:00:47,074 copying biobb_adapters/pycompss/biobb_cmip/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_cmip 2023-04-05T17:00:47,079 creating build/lib/biobb_adapters/pycompss/biobb_md 2023-04-05T17:00:47,080 copying biobb_adapters/pycompss/biobb_md/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md 2023-04-05T17:00:47,084 creating build/lib/biobb_adapters/pycompss/biobb_ml 2023-04-05T17:00:47,086 copying biobb_adapters/pycompss/biobb_ml/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml 2023-04-05T17:00:47,090 creating build/lib/biobb_adapters/pycompss/biobb_io 2023-04-05T17:00:47,092 copying biobb_adapters/pycompss/biobb_io/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_io 2023-04-05T17:00:47,096 creating build/lib/biobb_adapters/pycompss/biobb_commons 2023-04-05T17:00:47,097 copying biobb_adapters/pycompss/biobb_commons/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_commons 2023-04-05T17:00:47,101 copying biobb_adapters/pycompss/biobb_commons/task_config.py -> build/lib/biobb_adapters/pycompss/biobb_commons 2023-04-05T17:00:47,105 creating build/lib/biobb_adapters/pycompss/biobb_amber 2023-04-05T17:00:47,107 copying biobb_adapters/pycompss/biobb_amber/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber 2023-04-05T17:00:47,111 creating build/lib/biobb_adapters/pycompss/biobb_chemistry 2023-04-05T17:00:47,113 copying biobb_adapters/pycompss/biobb_chemistry/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry 2023-04-05T17:00:47,117 creating build/lib/biobb_adapters/pycompss/biobb_structure_utils 2023-04-05T17:00:47,118 copying biobb_adapters/pycompss/biobb_structure_utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils 2023-04-05T17:00:47,122 creating build/lib/biobb_adapters/pycompss/biobb_model 2023-04-05T17:00:47,124 copying biobb_adapters/pycompss/biobb_model/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_model 2023-04-05T17:00:47,131 creating build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,133 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,136 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,140 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,143 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,147 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,150 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,154 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,157 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,161 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,164 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,167 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,171 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,174 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,178 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,181 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,184 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,188 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,192 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,195 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,199 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,202 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,205 copying biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,208 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,212 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,215 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:00:47,221 creating build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,223 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,227 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,231 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,234 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,237 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,241 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,244 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,247 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,251 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,254 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,258 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,261 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,264 copying biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,267 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,271 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,274 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,277 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:00:47,283 creating build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:00:47,285 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxgentop.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:00:47,289 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxmerge_ff.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:00:47,292 copying biobb_adapters/pycompss/biobb_pmx/pmx/mutate_bst_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:00:47,296 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxanalyse.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:00:47,300 copying biobb_adapters/pycompss/biobb_pmx/pmx/analyse_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:00:47,303 copying biobb_adapters/pycompss/biobb_pmx/pmx/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:00:47,305 copying biobb_adapters/pycompss/biobb_pmx/pmx/mutate_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:00:47,309 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxcreate_top.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:00:47,313 copying biobb_adapters/pycompss/biobb_pmx/pmx/gentop_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:00:47,316 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxmutate.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:00:47,320 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxligand_hybrid.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:00:47,323 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxatom_mapping.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:00:47,328 creating build/lib/biobb_adapters/pycompss/biobb_vs/utils 2023-04-05T17:00:47,330 copying biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2023-04-05T17:00:47,334 copying biobb_adapters/pycompss/biobb_vs/utils/box_residues.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2023-04-05T17:00:47,337 copying biobb_adapters/pycompss/biobb_vs/utils/box.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2023-04-05T17:00:47,341 copying biobb_adapters/pycompss/biobb_vs/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2023-04-05T17:00:47,344 copying biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2023-04-05T17:00:47,349 creating build/lib/biobb_adapters/pycompss/biobb_vs/vina 2023-04-05T17:00:47,350 copying biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2023-04-05T17:00:47,354 copying biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2023-04-05T17:00:47,357 copying biobb_adapters/pycompss/biobb_vs/vina/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2023-04-05T17:00:47,362 creating build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2023-04-05T17:00:47,363 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2023-04-05T17:00:47,367 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2023-04-05T17:00:47,371 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2023-04-05T17:00:47,374 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2023-04-05T17:00:47,377 copying biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2023-04-05T17:00:47,382 creating build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2023-04-05T17:00:47,384 copying biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2023-04-05T17:00:47,388 copying biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2023-04-05T17:00:47,391 copying biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2023-04-05T17:00:47,394 copying biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2023-04-05T17:00:47,397 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2023-04-05T17:00:47,401 copying biobb_adapters/pycompss/biobb_cmip/cmip/titration.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2023-04-05T17:00:47,406 creating build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2023-04-05T17:00:47,407 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2023-04-05T17:00:47,411 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2023-04-05T17:00:47,414 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2023-04-05T17:00:47,418 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2023-04-05T17:00:47,420 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2023-04-05T17:00:47,426 creating build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:00:47,428 copying biobb_adapters/pycompss/biobb_md/gromacs/genion.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:00:47,432 copying biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:00:47,435 copying biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:00:47,439 copying biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:00:47,442 copying biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:00:47,445 copying biobb_adapters/pycompss/biobb_md/gromacs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:00:47,448 copying biobb_adapters/pycompss/biobb_md/gromacs/grompp.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:00:47,452 copying biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:00:47,455 copying biobb_adapters/pycompss/biobb_md/gromacs/editconf.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:00:47,459 copying biobb_adapters/pycompss/biobb_md/gromacs/solvate.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:00:47,462 copying biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:00:47,467 creating build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2023-04-05T17:00:47,469 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2023-04-05T17:00:47,473 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2023-04-05T17:00:47,476 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2023-04-05T17:00:47,480 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2023-04-05T17:00:47,485 creating build/lib/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:00:47,487 copying biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:00:47,491 copying biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:00:47,494 copying biobb_adapters/pycompss/biobb_ml/utils/map_variables.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:00:47,497 copying biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:00:47,501 copying biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:00:47,504 copying biobb_adapters/pycompss/biobb_ml/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:00:47,507 copying biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:00:47,511 copying biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:00:47,516 creating build/lib/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:00:47,518 copying biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:00:47,522 copying biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:00:47,526 copying biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:00:47,530 copying biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:00:47,533 copying biobb_adapters/pycompss/biobb_ml/classification/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:00:47,536 copying biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:00:47,540 copying biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:00:47,543 copying biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:00:47,548 creating build/lib/biobb_adapters/pycompss/biobb_ml/regression 2023-04-05T17:00:47,550 copying biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2023-04-05T17:00:47,554 copying biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2023-04-05T17:00:47,557 copying biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2023-04-05T17:00:47,561 copying biobb_adapters/pycompss/biobb_ml/regression/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2023-04-05T17:00:47,564 copying biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2023-04-05T17:00:47,569 creating build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:00:47,571 copying biobb_adapters/pycompss/biobb_ml/clustering/k_means.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:00:47,575 copying biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:00:47,579 copying biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:00:47,582 copying biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:00:47,586 copying biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:00:47,589 copying biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:00:47,592 copying biobb_adapters/pycompss/biobb_ml/clustering/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:00:47,595 copying biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:00:47,599 copying biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:00:47,604 creating build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2023-04-05T17:00:47,606 copying biobb_adapters/pycompss/biobb_ml/resampling/resampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2023-04-05T17:00:47,609 copying biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2023-04-05T17:00:47,613 copying biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2023-04-05T17:00:47,616 copying biobb_adapters/pycompss/biobb_ml/resampling/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2023-04-05T17:00:47,621 creating build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:00:47,623 copying biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:00:47,627 copying biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:00:47,630 copying biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:00:47,634 copying biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:00:47,637 copying biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:00:47,641 copying biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:00:47,644 copying biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:00:47,650 creating build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,652 copying biobb_adapters/pycompss/biobb_io/api/mmcif.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,656 copying biobb_adapters/pycompss/biobb_io/api/api_binding_site.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,660 copying biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,664 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,667 copying biobb_adapters/pycompss/biobb_io/api/pdb_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,671 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,675 copying biobb_adapters/pycompss/biobb_io/api/pdb.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,678 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,682 copying biobb_adapters/pycompss/biobb_io/api/pdb_variants.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,685 copying biobb_adapters/pycompss/biobb_io/api/alphafold.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,689 copying biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,692 copying biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,696 copying biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,700 copying biobb_adapters/pycompss/biobb_io/api/drugbank.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,703 copying biobb_adapters/pycompss/biobb_io/api/ligand.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,707 copying biobb_adapters/pycompss/biobb_io/api/ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,710 copying biobb_adapters/pycompss/biobb_io/api/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,713 copying biobb_adapters/pycompss/biobb_io/api/structure_info.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,717 copying biobb_adapters/pycompss/biobb_io/api/binding_site.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,720 copying biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:00:47,725 creating build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2023-04-05T17:00:47,727 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2023-04-05T17:00:47,731 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2023-04-05T17:00:47,735 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2023-04-05T17:00:47,739 creating build/lib/biobb_adapters/pycompss/biobb_amber/leap 2023-04-05T17:00:47,741 copying biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2023-04-05T17:00:47,745 copying biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2023-04-05T17:00:47,749 copying biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2023-04-05T17:00:47,753 copying biobb_adapters/pycompss/biobb_amber/leap/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2023-04-05T17:00:47,756 copying biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2023-04-05T17:00:47,761 creating build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2023-04-05T17:00:47,762 copying biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2023-04-05T17:00:47,766 copying biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2023-04-05T17:00:47,769 copying biobb_adapters/pycompss/biobb_amber/parmed/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2023-04-05T17:00:47,774 creating build/lib/biobb_adapters/pycompss/biobb_amber/nab 2023-04-05T17:00:47,775 copying biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py -> build/lib/biobb_adapters/pycompss/biobb_amber/nab 2023-04-05T17:00:47,779 copying biobb_adapters/pycompss/biobb_amber/nab/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/nab 2023-04-05T17:00:47,783 creating build/lib/biobb_adapters/pycompss/biobb_amber/process 2023-04-05T17:00:47,785 copying biobb_adapters/pycompss/biobb_amber/process/process_mdout.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2023-04-05T17:00:47,789 copying biobb_adapters/pycompss/biobb_amber/process/process_minout.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2023-04-05T17:00:47,792 copying biobb_adapters/pycompss/biobb_amber/process/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2023-04-05T17:00:47,796 creating build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2023-04-05T17:00:47,798 copying biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2023-04-05T17:00:47,802 copying biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2023-04-05T17:00:47,805 copying biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2023-04-05T17:00:47,810 creating build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2023-04-05T17:00:47,812 copying biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2023-04-05T17:00:47,815 copying biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2023-04-05T17:00:47,819 creating build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2023-04-05T17:00:47,821 copying biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2023-04-05T17:00:47,824 copying biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2023-04-05T17:00:47,828 creating build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2023-04-05T17:00:47,830 copying biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2023-04-05T17:00:47,834 copying biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2023-04-05T17:00:47,838 creating build/lib/biobb_adapters/pycompss/biobb_amber/sander 2023-04-05T17:00:47,840 copying biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_amber/sander 2023-04-05T17:00:47,844 copying biobb_adapters/pycompss/biobb_amber/sander/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/sander 2023-04-05T17:00:47,849 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:00:47,851 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:00:47,855 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:00:47,859 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:00:47,863 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:00:47,867 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:00:47,870 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:00:47,874 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:00:47,878 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:00:47,881 copying biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:00:47,886 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:00:47,888 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:00:47,891 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:00:47,895 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:00:47,899 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:00:47,902 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:00:47,905 copying biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:00:47,908 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:00:47,912 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:00:47,915 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:00:47,920 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2023-04-05T17:00:47,922 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2023-04-05T17:00:47,926 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2023-04-05T17:00:47,930 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2023-04-05T17:00:47,933 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2023-04-05T17:00:47,937 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2023-04-05T17:00:47,944 creating build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:47,946 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:47,950 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:47,953 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:47,956 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:47,960 copying biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:47,964 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:47,967 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:47,971 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:47,974 copying biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:47,978 copying biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:47,982 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:47,985 copying biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:47,989 copying biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:47,992 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:47,996 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:48,000 copying biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:48,003 copying biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:48,007 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:48,010 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:48,014 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:48,017 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:48,021 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:48,024 copying biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:48,028 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:48,031 copying biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:48,034 copying biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:48,038 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:00:48,044 creating build/lib/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:00:48,046 copying biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:00:48,050 copying biobb_adapters/pycompss/biobb_model/model/fix_amides.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:00:48,053 copying biobb_adapters/pycompss/biobb_model/model/fix_chirality.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:00:48,057 copying biobb_adapters/pycompss/biobb_model/model/fix_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:00:48,061 copying biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:00:48,064 copying biobb_adapters/pycompss/biobb_model/model/checking_log.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:00:48,068 copying biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:00:48,072 copying biobb_adapters/pycompss/biobb_model/model/fix_backbone.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:00:48,076 copying biobb_adapters/pycompss/biobb_model/model/mutate.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:00:48,079 copying biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:00:48,083 copying biobb_adapters/pycompss/biobb_model/model/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:00:48,086 copying biobb_adapters/pycompss/biobb_model/model/mutate_pc.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:00:48,090 running egg_info 2023-04-05T17:00:48,298 writing biobb_adapters.egg-info/PKG-INFO 2023-04-05T17:00:48,301 writing dependency_links to biobb_adapters.egg-info/dependency_links.txt 2023-04-05T17:00:48,305 writing requirements to biobb_adapters.egg-info/requires.txt 2023-04-05T17:00:48,307 writing top-level names to biobb_adapters.egg-info/top_level.txt 2023-04-05T17:00:48,478 reading manifest file 'biobb_adapters.egg-info/SOURCES.txt' 2023-04-05T17:00:48,525 reading manifest template 'MANIFEST.in' 2023-04-05T17:00:48,891 adding license file 'LICENSE' 2023-04-05T17:00:48,987 writing manifest file 'biobb_adapters.egg-info/SOURCES.txt' 2023-04-05T17:00:48,994 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:48,995 !! 2023-04-05T17:00:48,996 ############################ 2023-04-05T17:00:48,996 # Package would be ignored # 2023-04-05T17:00:48,996 ############################ 2023-04-05T17:00:48,997 Python recognizes 'biobb_adapters.cwl.biobb_amber' as an importable package, 2023-04-05T17:00:48,997 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:48,998 'biobb_adapters.cwl.biobb_amber' has been automatically added to the distribution only 2023-04-05T17:00:48,998 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:48,998 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:48,999 Please make sure that 'biobb_adapters.cwl.biobb_amber' is included as a package by using 2023-04-05T17:00:48,999 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,000 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,000 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,000 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,001 documentation page. 2023-04-05T17:00:49,002 !! 2023-04-05T17:00:49,002 check.warn(importable) 2023-04-05T17:00:49,003 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.ambpdb' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,003 !! 2023-04-05T17:00:49,004 ############################ 2023-04-05T17:00:49,004 # Package would be ignored # 2023-04-05T17:00:49,004 ############################ 2023-04-05T17:00:49,005 Python recognizes 'biobb_adapters.cwl.biobb_amber.ambpdb' as an importable package, 2023-04-05T17:00:49,005 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,006 'biobb_adapters.cwl.biobb_amber.ambpdb' has been automatically added to the distribution only 2023-04-05T17:00:49,006 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,006 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,007 Please make sure that 'biobb_adapters.cwl.biobb_amber.ambpdb' is included as a package by using 2023-04-05T17:00:49,007 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,008 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,008 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,009 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,009 documentation page. 2023-04-05T17:00:49,010 !! 2023-04-05T17:00:49,010 check.warn(importable) 2023-04-05T17:00:49,011 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.cpptraj' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,011 !! 2023-04-05T17:00:49,012 ############################ 2023-04-05T17:00:49,012 # Package would be ignored # 2023-04-05T17:00:49,012 ############################ 2023-04-05T17:00:49,013 Python recognizes 'biobb_adapters.cwl.biobb_amber.cpptraj' as an importable package, 2023-04-05T17:00:49,013 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,014 'biobb_adapters.cwl.biobb_amber.cpptraj' has been automatically added to the distribution only 2023-04-05T17:00:49,014 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,014 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,015 Please make sure that 'biobb_adapters.cwl.biobb_amber.cpptraj' is included as a package by using 2023-04-05T17:00:49,015 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,015 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,016 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,016 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,016 documentation page. 2023-04-05T17:00:49,017 !! 2023-04-05T17:00:49,018 check.warn(importable) 2023-04-05T17:00:49,018 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.leap' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,019 !! 2023-04-05T17:00:49,019 ############################ 2023-04-05T17:00:49,020 # Package would be ignored # 2023-04-05T17:00:49,020 ############################ 2023-04-05T17:00:49,020 Python recognizes 'biobb_adapters.cwl.biobb_amber.leap' as an importable package, 2023-04-05T17:00:49,021 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,021 'biobb_adapters.cwl.biobb_amber.leap' has been automatically added to the distribution only 2023-04-05T17:00:49,021 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,022 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,022 Please make sure that 'biobb_adapters.cwl.biobb_amber.leap' is included as a package by using 2023-04-05T17:00:49,023 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,023 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,023 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,024 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,024 documentation page. 2023-04-05T17:00:49,025 !! 2023-04-05T17:00:49,026 check.warn(importable) 2023-04-05T17:00:49,026 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.nap' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,026 !! 2023-04-05T17:00:49,027 ############################ 2023-04-05T17:00:49,027 # Package would be ignored # 2023-04-05T17:00:49,028 ############################ 2023-04-05T17:00:49,028 Python recognizes 'biobb_adapters.cwl.biobb_amber.nap' as an importable package, 2023-04-05T17:00:49,028 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,029 'biobb_adapters.cwl.biobb_amber.nap' has been automatically added to the distribution only 2023-04-05T17:00:49,029 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,029 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,030 Please make sure that 'biobb_adapters.cwl.biobb_amber.nap' is included as a package by using 2023-04-05T17:00:49,030 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,031 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,031 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,031 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,032 documentation page. 2023-04-05T17:00:49,033 !! 2023-04-05T17:00:49,033 check.warn(importable) 2023-04-05T17:00:49,033 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.parmed' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,034 !! 2023-04-05T17:00:49,035 ############################ 2023-04-05T17:00:49,035 # Package would be ignored # 2023-04-05T17:00:49,035 ############################ 2023-04-05T17:00:49,035 Python recognizes 'biobb_adapters.cwl.biobb_amber.parmed' as an importable package, 2023-04-05T17:00:49,036 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,036 'biobb_adapters.cwl.biobb_amber.parmed' has been automatically added to the distribution only 2023-04-05T17:00:49,037 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,037 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,037 Please make sure that 'biobb_adapters.cwl.biobb_amber.parmed' is included as a package by using 2023-04-05T17:00:49,038 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,038 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,038 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,039 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,039 documentation page. 2023-04-05T17:00:49,040 !! 2023-04-05T17:00:49,041 check.warn(importable) 2023-04-05T17:00:49,042 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.pdb4amber' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,042 !! 2023-04-05T17:00:49,043 ############################ 2023-04-05T17:00:49,043 # Package would be ignored # 2023-04-05T17:00:49,044 ############################ 2023-04-05T17:00:49,044 Python recognizes 'biobb_adapters.cwl.biobb_amber.pdb4amber' as an importable package, 2023-04-05T17:00:49,044 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,045 'biobb_adapters.cwl.biobb_amber.pdb4amber' has been automatically added to the distribution only 2023-04-05T17:00:49,045 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,046 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,046 Please make sure that 'biobb_adapters.cwl.biobb_amber.pdb4amber' is included as a package by using 2023-04-05T17:00:49,046 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,047 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,047 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,048 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,048 documentation page. 2023-04-05T17:00:49,049 !! 2023-04-05T17:00:49,050 check.warn(importable) 2023-04-05T17:00:49,050 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.pmemd' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,050 !! 2023-04-05T17:00:49,051 ############################ 2023-04-05T17:00:49,051 # Package would be ignored # 2023-04-05T17:00:49,052 ############################ 2023-04-05T17:00:49,052 Python recognizes 'biobb_adapters.cwl.biobb_amber.pmemd' as an importable package, 2023-04-05T17:00:49,052 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,053 'biobb_adapters.cwl.biobb_amber.pmemd' has been automatically added to the distribution only 2023-04-05T17:00:49,053 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,053 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,054 Please make sure that 'biobb_adapters.cwl.biobb_amber.pmemd' is included as a package by using 2023-04-05T17:00:49,054 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,055 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,055 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,055 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,056 documentation page. 2023-04-05T17:00:49,057 !! 2023-04-05T17:00:49,057 check.warn(importable) 2023-04-05T17:00:49,058 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.process' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,058 !! 2023-04-05T17:00:49,059 ############################ 2023-04-05T17:00:49,059 # Package would be ignored # 2023-04-05T17:00:49,059 ############################ 2023-04-05T17:00:49,060 Python recognizes 'biobb_adapters.cwl.biobb_amber.process' as an importable package, 2023-04-05T17:00:49,060 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,061 'biobb_adapters.cwl.biobb_amber.process' has been automatically added to the distribution only 2023-04-05T17:00:49,061 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,061 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,062 Please make sure that 'biobb_adapters.cwl.biobb_amber.process' is included as a package by using 2023-04-05T17:00:49,062 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,062 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,063 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,063 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,063 documentation page. 2023-04-05T17:00:49,064 !! 2023-04-05T17:00:49,065 check.warn(importable) 2023-04-05T17:00:49,065 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.sander' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,065 !! 2023-04-05T17:00:49,066 ############################ 2023-04-05T17:00:49,067 # Package would be ignored # 2023-04-05T17:00:49,067 ############################ 2023-04-05T17:00:49,067 Python recognizes 'biobb_adapters.cwl.biobb_amber.sander' as an importable package, 2023-04-05T17:00:49,067 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,068 'biobb_adapters.cwl.biobb_amber.sander' has been automatically added to the distribution only 2023-04-05T17:00:49,068 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,069 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,069 Please make sure that 'biobb_adapters.cwl.biobb_amber.sander' is included as a package by using 2023-04-05T17:00:49,070 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,070 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,070 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,071 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,071 documentation page. 2023-04-05T17:00:49,072 !! 2023-04-05T17:00:49,073 check.warn(importable) 2023-04-05T17:00:49,073 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,073 !! 2023-04-05T17:00:49,074 ############################ 2023-04-05T17:00:49,074 # Package would be ignored # 2023-04-05T17:00:49,075 ############################ 2023-04-05T17:00:49,075 Python recognizes 'biobb_adapters.cwl.biobb_analysis' as an importable package, 2023-04-05T17:00:49,075 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,076 'biobb_adapters.cwl.biobb_analysis' has been automatically added to the distribution only 2023-04-05T17:00:49,076 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,076 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,077 Please make sure that 'biobb_adapters.cwl.biobb_analysis' is included as a package by using 2023-04-05T17:00:49,077 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,078 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,078 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,078 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,079 documentation page. 2023-04-05T17:00:49,080 !! 2023-04-05T17:00:49,080 check.warn(importable) 2023-04-05T17:00:49,080 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.test' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,081 !! 2023-04-05T17:00:49,082 ############################ 2023-04-05T17:00:49,082 # Package would be ignored # 2023-04-05T17:00:49,082 ############################ 2023-04-05T17:00:49,082 Python recognizes 'biobb_adapters.cwl.biobb_analysis.test' as an importable package, 2023-04-05T17:00:49,083 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,083 'biobb_adapters.cwl.biobb_analysis.test' has been automatically added to the distribution only 2023-04-05T17:00:49,084 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,084 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,084 Please make sure that 'biobb_adapters.cwl.biobb_analysis.test' is included as a package by using 2023-04-05T17:00:49,085 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,085 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,085 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,086 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,086 documentation page. 2023-04-05T17:00:49,087 !! 2023-04-05T17:00:49,088 check.warn(importable) 2023-04-05T17:00:49,088 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.test.ambertools' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,088 !! 2023-04-05T17:00:49,089 ############################ 2023-04-05T17:00:49,089 # Package would be ignored # 2023-04-05T17:00:49,090 ############################ 2023-04-05T17:00:49,090 Python recognizes 'biobb_adapters.cwl.biobb_analysis.test.ambertools' as an importable package, 2023-04-05T17:00:49,090 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,091 'biobb_adapters.cwl.biobb_analysis.test.ambertools' has been automatically added to the distribution only 2023-04-05T17:00:49,091 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,091 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,092 Please make sure that 'biobb_adapters.cwl.biobb_analysis.test.ambertools' is included as a package by using 2023-04-05T17:00:49,092 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,093 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,093 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,093 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,094 documentation page. 2023-04-05T17:00:49,095 !! 2023-04-05T17:00:49,095 check.warn(importable) 2023-04-05T17:00:49,096 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.test.data.ambertools' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,096 !! 2023-04-05T17:00:49,097 ############################ 2023-04-05T17:00:49,097 # Package would be ignored # 2023-04-05T17:00:49,097 ############################ 2023-04-05T17:00:49,098 Python recognizes 'biobb_adapters.cwl.biobb_analysis.test.data.ambertools' as an importable package, 2023-04-05T17:00:49,098 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,099 'biobb_adapters.cwl.biobb_analysis.test.data.ambertools' has been automatically added to the distribution only 2023-04-05T17:00:49,099 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,099 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,100 Please make sure that 'biobb_adapters.cwl.biobb_analysis.test.data.ambertools' is included as a package by using 2023-04-05T17:00:49,100 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,100 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,101 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,101 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,101 documentation page. 2023-04-05T17:00:49,102 !! 2023-04-05T17:00:49,103 check.warn(importable) 2023-04-05T17:00:49,103 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.test.data.gromacs' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,103 !! 2023-04-05T17:00:49,104 ############################ 2023-04-05T17:00:49,105 # Package would be ignored # 2023-04-05T17:00:49,105 ############################ 2023-04-05T17:00:49,105 Python recognizes 'biobb_adapters.cwl.biobb_analysis.test.data.gromacs' as an importable package, 2023-04-05T17:00:49,106 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,106 'biobb_adapters.cwl.biobb_analysis.test.data.gromacs' has been automatically added to the distribution only 2023-04-05T17:00:49,107 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,107 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,107 Please make sure that 'biobb_adapters.cwl.biobb_analysis.test.data.gromacs' is included as a package by using 2023-04-05T17:00:49,108 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,108 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,108 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,109 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,109 documentation page. 2023-04-05T17:00:49,110 !! 2023-04-05T17:00:49,111 check.warn(importable) 2023-04-05T17:00:49,111 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.test.gromacs' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,111 !! 2023-04-05T17:00:49,112 ############################ 2023-04-05T17:00:49,112 # Package would be ignored # 2023-04-05T17:00:49,113 ############################ 2023-04-05T17:00:49,113 Python recognizes 'biobb_adapters.cwl.biobb_analysis.test.gromacs' as an importable package, 2023-04-05T17:00:49,113 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,114 'biobb_adapters.cwl.biobb_analysis.test.gromacs' has been automatically added to the distribution only 2023-04-05T17:00:49,114 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,114 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,115 Please make sure that 'biobb_adapters.cwl.biobb_analysis.test.gromacs' is included as a package by using 2023-04-05T17:00:49,115 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,116 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,116 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,116 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,117 documentation page. 2023-04-05T17:00:49,118 !! 2023-04-05T17:00:49,118 check.warn(importable) 2023-04-05T17:00:49,118 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,119 !! 2023-04-05T17:00:49,120 ############################ 2023-04-05T17:00:49,120 # Package would be ignored # 2023-04-05T17:00:49,120 ############################ 2023-04-05T17:00:49,120 Python recognizes 'biobb_adapters.cwl.biobb_chemistry' as an importable package, 2023-04-05T17:00:49,121 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,121 'biobb_adapters.cwl.biobb_chemistry' has been automatically added to the distribution only 2023-04-05T17:00:49,122 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,122 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,122 Please make sure that 'biobb_adapters.cwl.biobb_chemistry' is included as a package by using 2023-04-05T17:00:49,123 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,123 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,123 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,124 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,124 documentation page. 2023-04-05T17:00:49,125 !! 2023-04-05T17:00:49,126 check.warn(importable) 2023-04-05T17:00:49,126 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.acpype' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,126 !! 2023-04-05T17:00:49,127 ############################ 2023-04-05T17:00:49,127 # Package would be ignored # 2023-04-05T17:00:49,128 ############################ 2023-04-05T17:00:49,128 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.acpype' as an importable package, 2023-04-05T17:00:49,128 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,129 'biobb_adapters.cwl.biobb_chemistry.acpype' has been automatically added to the distribution only 2023-04-05T17:00:49,129 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,129 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,130 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.acpype' is included as a package by using 2023-04-05T17:00:49,130 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,130 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,131 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,131 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,132 documentation page. 2023-04-05T17:00:49,132 !! 2023-04-05T17:00:49,133 check.warn(importable) 2023-04-05T17:00:49,133 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.ambertools' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,134 !! 2023-04-05T17:00:49,134 ############################ 2023-04-05T17:00:49,135 # Package would be ignored # 2023-04-05T17:00:49,135 ############################ 2023-04-05T17:00:49,135 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.ambertools' as an importable package, 2023-04-05T17:00:49,136 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,136 'biobb_adapters.cwl.biobb_chemistry.ambertools' has been automatically added to the distribution only 2023-04-05T17:00:49,136 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,137 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,137 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.ambertools' is included as a package by using 2023-04-05T17:00:49,138 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,138 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,138 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,139 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,139 documentation page. 2023-04-05T17:00:49,140 !! 2023-04-05T17:00:49,140 check.warn(importable) 2023-04-05T17:00:49,141 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.babelm' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,141 !! 2023-04-05T17:00:49,142 ############################ 2023-04-05T17:00:49,142 # Package would be ignored # 2023-04-05T17:00:49,142 ############################ 2023-04-05T17:00:49,143 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.babelm' as an importable package, 2023-04-05T17:00:49,143 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,144 'biobb_adapters.cwl.biobb_chemistry.babelm' has been automatically added to the distribution only 2023-04-05T17:00:49,144 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,144 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,145 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.babelm' is included as a package by using 2023-04-05T17:00:49,145 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,145 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,146 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,146 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,147 documentation page. 2023-04-05T17:00:49,147 !! 2023-04-05T17:00:49,148 check.warn(importable) 2023-04-05T17:00:49,148 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,149 !! 2023-04-05T17:00:49,149 ############################ 2023-04-05T17:00:49,150 # Package would be ignored # 2023-04-05T17:00:49,150 ############################ 2023-04-05T17:00:49,150 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test' as an importable package, 2023-04-05T17:00:49,151 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,151 'biobb_adapters.cwl.biobb_chemistry.test' has been automatically added to the distribution only 2023-04-05T17:00:49,151 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,152 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,152 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test' is included as a package by using 2023-04-05T17:00:49,153 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,153 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,153 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,154 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,154 documentation page. 2023-04-05T17:00:49,155 !! 2023-04-05T17:00:49,156 check.warn(importable) 2023-04-05T17:00:49,156 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.acpype' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,156 !! 2023-04-05T17:00:49,157 ############################ 2023-04-05T17:00:49,157 # Package would be ignored # 2023-04-05T17:00:49,158 ############################ 2023-04-05T17:00:49,158 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.acpype' as an importable package, 2023-04-05T17:00:49,158 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,159 'biobb_adapters.cwl.biobb_chemistry.test.acpype' has been automatically added to the distribution only 2023-04-05T17:00:49,159 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,159 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,160 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.acpype' is included as a package by using 2023-04-05T17:00:49,160 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,160 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,161 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,161 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,162 documentation page. 2023-04-05T17:00:49,163 !! 2023-04-05T17:00:49,163 check.warn(importable) 2023-04-05T17:00:49,163 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.ambertools' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,164 !! 2023-04-05T17:00:49,164 ############################ 2023-04-05T17:00:49,165 # Package would be ignored # 2023-04-05T17:00:49,165 ############################ 2023-04-05T17:00:49,165 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.ambertools' as an importable package, 2023-04-05T17:00:49,166 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,166 'biobb_adapters.cwl.biobb_chemistry.test.ambertools' has been automatically added to the distribution only 2023-04-05T17:00:49,166 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,167 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,167 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.ambertools' is included as a package by using 2023-04-05T17:00:49,168 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,168 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,168 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,169 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,169 documentation page. 2023-04-05T17:00:49,170 !! 2023-04-05T17:00:49,171 check.warn(importable) 2023-04-05T17:00:49,171 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.babelm' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,171 !! 2023-04-05T17:00:49,172 ############################ 2023-04-05T17:00:49,172 # Package would be ignored # 2023-04-05T17:00:49,172 ############################ 2023-04-05T17:00:49,173 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.babelm' as an importable package, 2023-04-05T17:00:49,173 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,174 'biobb_adapters.cwl.biobb_chemistry.test.babelm' has been automatically added to the distribution only 2023-04-05T17:00:49,174 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,174 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,175 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.babelm' is included as a package by using 2023-04-05T17:00:49,175 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,175 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,176 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,176 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,176 documentation page. 2023-04-05T17:00:49,177 !! 2023-04-05T17:00:49,178 check.warn(importable) 2023-04-05T17:00:49,178 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.data.acpype' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,178 !! 2023-04-05T17:00:49,179 ############################ 2023-04-05T17:00:49,180 # Package would be ignored # 2023-04-05T17:00:49,180 ############################ 2023-04-05T17:00:49,180 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.data.acpype' as an importable package, 2023-04-05T17:00:49,180 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,181 'biobb_adapters.cwl.biobb_chemistry.test.data.acpype' has been automatically added to the distribution only 2023-04-05T17:00:49,181 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,182 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,182 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.data.acpype' is included as a package by using 2023-04-05T17:00:49,182 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,183 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,183 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,184 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,184 documentation page. 2023-04-05T17:00:49,185 !! 2023-04-05T17:00:49,185 check.warn(importable) 2023-04-05T17:00:49,186 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.data.ambertools' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,186 !! 2023-04-05T17:00:49,187 ############################ 2023-04-05T17:00:49,187 # Package would be ignored # 2023-04-05T17:00:49,187 ############################ 2023-04-05T17:00:49,188 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.data.ambertools' as an importable package, 2023-04-05T17:00:49,188 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,188 'biobb_adapters.cwl.biobb_chemistry.test.data.ambertools' has been automatically added to the distribution only 2023-04-05T17:00:49,189 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,189 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,190 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.data.ambertools' is included as a package by using 2023-04-05T17:00:49,190 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,190 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,190 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,191 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,191 documentation page. 2023-04-05T17:00:49,192 !! 2023-04-05T17:00:49,193 check.warn(importable) 2023-04-05T17:00:49,193 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.data.babelm' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,193 !! 2023-04-05T17:00:49,194 ############################ 2023-04-05T17:00:49,194 # Package would be ignored # 2023-04-05T17:00:49,195 ############################ 2023-04-05T17:00:49,195 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.data.babelm' as an importable package, 2023-04-05T17:00:49,195 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,196 'biobb_adapters.cwl.biobb_chemistry.test.data.babelm' has been automatically added to the distribution only 2023-04-05T17:00:49,196 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,197 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,197 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.data.babelm' is included as a package by using 2023-04-05T17:00:49,197 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,198 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,198 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,199 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,199 documentation page. 2023-04-05T17:00:49,200 !! 2023-04-05T17:00:49,200 check.warn(importable) 2023-04-05T17:00:49,201 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_cmip' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,201 !! 2023-04-05T17:00:49,202 ############################ 2023-04-05T17:00:49,202 # Package would be ignored # 2023-04-05T17:00:49,202 ############################ 2023-04-05T17:00:49,203 Python recognizes 'biobb_adapters.cwl.biobb_cmip' as an importable package, 2023-04-05T17:00:49,203 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,204 'biobb_adapters.cwl.biobb_cmip' has been automatically added to the distribution only 2023-04-05T17:00:49,204 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,204 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,205 Please make sure that 'biobb_adapters.cwl.biobb_cmip' is included as a package by using 2023-04-05T17:00:49,205 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,205 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,206 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,206 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,207 documentation page. 2023-04-05T17:00:49,208 !! 2023-04-05T17:00:49,208 check.warn(importable) 2023-04-05T17:00:49,209 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_dna' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,209 !! 2023-04-05T17:00:49,210 ############################ 2023-04-05T17:00:49,210 # Package would be ignored # 2023-04-05T17:00:49,210 ############################ 2023-04-05T17:00:49,211 Python recognizes 'biobb_adapters.cwl.biobb_dna' as an importable package, 2023-04-05T17:00:49,211 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,212 'biobb_adapters.cwl.biobb_dna' has been automatically added to the distribution only 2023-04-05T17:00:49,212 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,212 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,213 Please make sure that 'biobb_adapters.cwl.biobb_dna' is included as a package by using 2023-04-05T17:00:49,213 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,214 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,214 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,215 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,215 documentation page. 2023-04-05T17:00:49,216 !! 2023-04-05T17:00:49,217 check.warn(importable) 2023-04-05T17:00:49,217 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_gromacs' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,217 !! 2023-04-05T17:00:49,218 ############################ 2023-04-05T17:00:49,219 # Package would be ignored # 2023-04-05T17:00:49,219 ############################ 2023-04-05T17:00:49,220 Python recognizes 'biobb_adapters.cwl.biobb_gromacs' as an importable package, 2023-04-05T17:00:49,220 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,221 'biobb_adapters.cwl.biobb_gromacs' has been automatically added to the distribution only 2023-04-05T17:00:49,221 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,221 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,222 Please make sure that 'biobb_adapters.cwl.biobb_gromacs' is included as a package by using 2023-04-05T17:00:49,222 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,223 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,223 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,224 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,224 documentation page. 2023-04-05T17:00:49,225 !! 2023-04-05T17:00:49,226 check.warn(importable) 2023-04-05T17:00:49,226 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_io' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,227 !! 2023-04-05T17:00:49,228 ############################ 2023-04-05T17:00:49,228 # Package would be ignored # 2023-04-05T17:00:49,228 ############################ 2023-04-05T17:00:49,229 Python recognizes 'biobb_adapters.cwl.biobb_io' as an importable package, 2023-04-05T17:00:49,229 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,230 'biobb_adapters.cwl.biobb_io' has been automatically added to the distribution only 2023-04-05T17:00:49,230 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,230 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,231 Please make sure that 'biobb_adapters.cwl.biobb_io' is included as a package by using 2023-04-05T17:00:49,231 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,232 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,232 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,233 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,233 documentation page. 2023-04-05T17:00:49,234 !! 2023-04-05T17:00:49,235 check.warn(importable) 2023-04-05T17:00:49,235 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_io.mmb_api' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,236 !! 2023-04-05T17:00:49,236 ############################ 2023-04-05T17:00:49,237 # Package would be ignored # 2023-04-05T17:00:49,237 ############################ 2023-04-05T17:00:49,237 Python recognizes 'biobb_adapters.cwl.biobb_io.mmb_api' as an importable package, 2023-04-05T17:00:49,238 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,239 'biobb_adapters.cwl.biobb_io.mmb_api' has been automatically added to the distribution only 2023-04-05T17:00:49,239 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,239 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,240 Please make sure that 'biobb_adapters.cwl.biobb_io.mmb_api' is included as a package by using 2023-04-05T17:00:49,240 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,240 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,241 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,241 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,242 documentation page. 2023-04-05T17:00:49,243 !! 2023-04-05T17:00:49,244 check.warn(importable) 2023-04-05T17:00:49,244 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,245 !! 2023-04-05T17:00:49,246 ############################ 2023-04-05T17:00:49,246 # Package would be ignored # 2023-04-05T17:00:49,246 ############################ 2023-04-05T17:00:49,247 Python recognizes 'biobb_adapters.cwl.biobb_md' as an importable package, 2023-04-05T17:00:49,247 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,247 'biobb_adapters.cwl.biobb_md' has been automatically added to the distribution only 2023-04-05T17:00:49,248 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,249 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,250 Please make sure that 'biobb_adapters.cwl.biobb_md' is included as a package by using 2023-04-05T17:00:49,250 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,250 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,250 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,251 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,251 documentation page. 2023-04-05T17:00:49,252 !! 2023-04-05T17:00:49,253 check.warn(importable) 2023-04-05T17:00:49,254 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.gromacs' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,254 !! 2023-04-05T17:00:49,255 ############################ 2023-04-05T17:00:49,256 # Package would be ignored # 2023-04-05T17:00:49,256 ############################ 2023-04-05T17:00:49,256 Python recognizes 'biobb_adapters.cwl.biobb_md.gromacs' as an importable package, 2023-04-05T17:00:49,257 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,258 'biobb_adapters.cwl.biobb_md.gromacs' has been automatically added to the distribution only 2023-04-05T17:00:49,258 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,258 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,259 Please make sure that 'biobb_adapters.cwl.biobb_md.gromacs' is included as a package by using 2023-04-05T17:00:49,259 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,260 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,260 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,261 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,261 documentation page. 2023-04-05T17:00:49,262 !! 2023-04-05T17:00:49,263 check.warn(importable) 2023-04-05T17:00:49,263 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.gromacs_extra' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,264 !! 2023-04-05T17:00:49,265 ############################ 2023-04-05T17:00:49,265 # Package would be ignored # 2023-04-05T17:00:49,265 ############################ 2023-04-05T17:00:49,266 Python recognizes 'biobb_adapters.cwl.biobb_md.gromacs_extra' as an importable package, 2023-04-05T17:00:49,266 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,267 'biobb_adapters.cwl.biobb_md.gromacs_extra' has been automatically added to the distribution only 2023-04-05T17:00:49,267 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,268 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,268 Please make sure that 'biobb_adapters.cwl.biobb_md.gromacs_extra' is included as a package by using 2023-04-05T17:00:49,269 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,269 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,269 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,270 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,271 documentation page. 2023-04-05T17:00:49,272 !! 2023-04-05T17:00:49,273 check.warn(importable) 2023-04-05T17:00:49,273 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.test' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,273 !! 2023-04-05T17:00:49,274 ############################ 2023-04-05T17:00:49,275 # Package would be ignored # 2023-04-05T17:00:49,275 ############################ 2023-04-05T17:00:49,276 Python recognizes 'biobb_adapters.cwl.biobb_md.test' as an importable package, 2023-04-05T17:00:49,276 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,277 'biobb_adapters.cwl.biobb_md.test' has been automatically added to the distribution only 2023-04-05T17:00:49,277 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,277 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,278 Please make sure that 'biobb_adapters.cwl.biobb_md.test' is included as a package by using 2023-04-05T17:00:49,278 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,279 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,279 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,280 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,280 documentation page. 2023-04-05T17:00:49,281 !! 2023-04-05T17:00:49,282 check.warn(importable) 2023-04-05T17:00:49,282 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.test.data.gromacs' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,283 !! 2023-04-05T17:00:49,283 ############################ 2023-04-05T17:00:49,284 # Package would be ignored # 2023-04-05T17:00:49,285 ############################ 2023-04-05T17:00:49,285 Python recognizes 'biobb_adapters.cwl.biobb_md.test.data.gromacs' as an importable package, 2023-04-05T17:00:49,285 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,286 'biobb_adapters.cwl.biobb_md.test.data.gromacs' has been automatically added to the distribution only 2023-04-05T17:00:49,286 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,287 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,287 Please make sure that 'biobb_adapters.cwl.biobb_md.test.data.gromacs' is included as a package by using 2023-04-05T17:00:49,288 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,288 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,288 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,289 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,289 documentation page. 2023-04-05T17:00:49,290 !! 2023-04-05T17:00:49,291 check.warn(importable) 2023-04-05T17:00:49,291 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.test.data.gromacs_extra' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,292 !! 2023-04-05T17:00:49,293 ############################ 2023-04-05T17:00:49,293 # Package would be ignored # 2023-04-05T17:00:49,293 ############################ 2023-04-05T17:00:49,294 Python recognizes 'biobb_adapters.cwl.biobb_md.test.data.gromacs_extra' as an importable package, 2023-04-05T17:00:49,294 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,295 'biobb_adapters.cwl.biobb_md.test.data.gromacs_extra' has been automatically added to the distribution only 2023-04-05T17:00:49,295 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,295 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,296 Please make sure that 'biobb_adapters.cwl.biobb_md.test.data.gromacs_extra' is included as a package by using 2023-04-05T17:00:49,296 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,297 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,297 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,298 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,298 documentation page. 2023-04-05T17:00:49,299 !! 2023-04-05T17:00:49,300 check.warn(importable) 2023-04-05T17:00:49,300 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.test.gromacs' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,300 !! 2023-04-05T17:00:49,301 ############################ 2023-04-05T17:00:49,301 # Package would be ignored # 2023-04-05T17:00:49,302 ############################ 2023-04-05T17:00:49,302 Python recognizes 'biobb_adapters.cwl.biobb_md.test.gromacs' as an importable package, 2023-04-05T17:00:49,302 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,303 'biobb_adapters.cwl.biobb_md.test.gromacs' has been automatically added to the distribution only 2023-04-05T17:00:49,304 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,304 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,305 Please make sure that 'biobb_adapters.cwl.biobb_md.test.gromacs' is included as a package by using 2023-04-05T17:00:49,305 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,305 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,306 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,306 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,307 documentation page. 2023-04-05T17:00:49,308 !! 2023-04-05T17:00:49,308 check.warn(importable) 2023-04-05T17:00:49,309 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.test.gromacs_extra' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,309 !! 2023-04-05T17:00:49,310 ############################ 2023-04-05T17:00:49,310 # Package would be ignored # 2023-04-05T17:00:49,311 ############################ 2023-04-05T17:00:49,311 Python recognizes 'biobb_adapters.cwl.biobb_md.test.gromacs_extra' as an importable package, 2023-04-05T17:00:49,311 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,312 'biobb_adapters.cwl.biobb_md.test.gromacs_extra' has been automatically added to the distribution only 2023-04-05T17:00:49,312 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,313 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,313 Please make sure that 'biobb_adapters.cwl.biobb_md.test.gromacs_extra' is included as a package by using 2023-04-05T17:00:49,314 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,314 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,314 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,315 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,315 documentation page. 2023-04-05T17:00:49,316 !! 2023-04-05T17:00:49,317 check.warn(importable) 2023-04-05T17:00:49,317 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,318 !! 2023-04-05T17:00:49,319 ############################ 2023-04-05T17:00:49,319 # Package would be ignored # 2023-04-05T17:00:49,319 ############################ 2023-04-05T17:00:49,320 Python recognizes 'biobb_adapters.cwl.biobb_ml' as an importable package, 2023-04-05T17:00:49,320 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,321 'biobb_adapters.cwl.biobb_ml' has been automatically added to the distribution only 2023-04-05T17:00:49,321 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,321 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,322 Please make sure that 'biobb_adapters.cwl.biobb_ml' is included as a package by using 2023-04-05T17:00:49,323 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,323 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,323 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,324 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,324 documentation page. 2023-04-05T17:00:49,325 !! 2023-04-05T17:00:49,326 check.warn(importable) 2023-04-05T17:00:49,326 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.classification' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,326 !! 2023-04-05T17:00:49,327 ############################ 2023-04-05T17:00:49,328 # Package would be ignored # 2023-04-05T17:00:49,328 ############################ 2023-04-05T17:00:49,329 Python recognizes 'biobb_adapters.cwl.biobb_ml.classification' as an importable package, 2023-04-05T17:00:49,329 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,330 'biobb_adapters.cwl.biobb_ml.classification' has been automatically added to the distribution only 2023-04-05T17:00:49,330 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,330 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,331 Please make sure that 'biobb_adapters.cwl.biobb_ml.classification' is included as a package by using 2023-04-05T17:00:49,331 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,331 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,332 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,332 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,333 documentation page. 2023-04-05T17:00:49,334 !! 2023-04-05T17:00:49,334 check.warn(importable) 2023-04-05T17:00:49,335 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.clustering' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,335 !! 2023-04-05T17:00:49,336 ############################ 2023-04-05T17:00:49,336 # Package would be ignored # 2023-04-05T17:00:49,337 ############################ 2023-04-05T17:00:49,337 Python recognizes 'biobb_adapters.cwl.biobb_ml.clustering' as an importable package, 2023-04-05T17:00:49,337 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,338 'biobb_adapters.cwl.biobb_ml.clustering' has been automatically added to the distribution only 2023-04-05T17:00:49,338 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,339 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,339 Please make sure that 'biobb_adapters.cwl.biobb_ml.clustering' is included as a package by using 2023-04-05T17:00:49,340 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,340 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,340 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,341 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,341 documentation page. 2023-04-05T17:00:49,342 !! 2023-04-05T17:00:49,343 check.warn(importable) 2023-04-05T17:00:49,343 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.dimensionality_reduction' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,343 !! 2023-04-05T17:00:49,344 ############################ 2023-04-05T17:00:49,345 # Package would be ignored # 2023-04-05T17:00:49,345 ############################ 2023-04-05T17:00:49,345 Python recognizes 'biobb_adapters.cwl.biobb_ml.dimensionality_reduction' as an importable package, 2023-04-05T17:00:49,346 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,347 'biobb_adapters.cwl.biobb_ml.dimensionality_reduction' has been automatically added to the distribution only 2023-04-05T17:00:49,347 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,347 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,348 Please make sure that 'biobb_adapters.cwl.biobb_ml.dimensionality_reduction' is included as a package by using 2023-04-05T17:00:49,349 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,349 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,349 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,350 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,350 documentation page. 2023-04-05T17:00:49,351 !! 2023-04-05T17:00:49,352 check.warn(importable) 2023-04-05T17:00:49,352 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.neural_networks' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,353 !! 2023-04-05T17:00:49,354 ############################ 2023-04-05T17:00:49,354 # Package would be ignored # 2023-04-05T17:00:49,354 ############################ 2023-04-05T17:00:49,355 Python recognizes 'biobb_adapters.cwl.biobb_ml.neural_networks' as an importable package, 2023-04-05T17:00:49,355 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,356 'biobb_adapters.cwl.biobb_ml.neural_networks' has been automatically added to the distribution only 2023-04-05T17:00:49,357 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,357 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,358 Please make sure that 'biobb_adapters.cwl.biobb_ml.neural_networks' is included as a package by using 2023-04-05T17:00:49,358 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,358 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,359 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,359 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,360 documentation page. 2023-04-05T17:00:49,361 !! 2023-04-05T17:00:49,361 check.warn(importable) 2023-04-05T17:00:49,361 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.regression' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,362 !! 2023-04-05T17:00:49,364 ############################ 2023-04-05T17:00:49,364 # Package would be ignored # 2023-04-05T17:00:49,364 ############################ 2023-04-05T17:00:49,365 Python recognizes 'biobb_adapters.cwl.biobb_ml.regression' as an importable package, 2023-04-05T17:00:49,365 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,365 'biobb_adapters.cwl.biobb_ml.regression' has been automatically added to the distribution only 2023-04-05T17:00:49,366 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,366 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,367 Please make sure that 'biobb_adapters.cwl.biobb_ml.regression' is included as a package by using 2023-04-05T17:00:49,367 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,367 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,368 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,369 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,369 documentation page. 2023-04-05T17:00:49,370 !! 2023-04-05T17:00:49,371 check.warn(importable) 2023-04-05T17:00:49,371 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.resampling' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,371 !! 2023-04-05T17:00:49,372 ############################ 2023-04-05T17:00:49,373 # Package would be ignored # 2023-04-05T17:00:49,374 ############################ 2023-04-05T17:00:49,374 Python recognizes 'biobb_adapters.cwl.biobb_ml.resampling' as an importable package, 2023-04-05T17:00:49,374 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,375 'biobb_adapters.cwl.biobb_ml.resampling' has been automatically added to the distribution only 2023-04-05T17:00:49,375 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,376 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,376 Please make sure that 'biobb_adapters.cwl.biobb_ml.resampling' is included as a package by using 2023-04-05T17:00:49,377 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,377 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,378 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,378 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,379 documentation page. 2023-04-05T17:00:49,380 !! 2023-04-05T17:00:49,380 check.warn(importable) 2023-04-05T17:00:49,381 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.utils' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,381 !! 2023-04-05T17:00:49,382 ############################ 2023-04-05T17:00:49,383 # Package would be ignored # 2023-04-05T17:00:49,383 ############################ 2023-04-05T17:00:49,383 Python recognizes 'biobb_adapters.cwl.biobb_ml.utils' as an importable package, 2023-04-05T17:00:49,384 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,384 'biobb_adapters.cwl.biobb_ml.utils' has been automatically added to the distribution only 2023-04-05T17:00:49,385 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,385 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,386 Please make sure that 'biobb_adapters.cwl.biobb_ml.utils' is included as a package by using 2023-04-05T17:00:49,386 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,387 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,387 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,388 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,388 documentation page. 2023-04-05T17:00:49,389 !! 2023-04-05T17:00:49,390 check.warn(importable) 2023-04-05T17:00:49,390 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_model' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,391 !! 2023-04-05T17:00:49,392 ############################ 2023-04-05T17:00:49,392 # Package would be ignored # 2023-04-05T17:00:49,392 ############################ 2023-04-05T17:00:49,393 Python recognizes 'biobb_adapters.cwl.biobb_model' as an importable package, 2023-04-05T17:00:49,393 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,394 'biobb_adapters.cwl.biobb_model' has been automatically added to the distribution only 2023-04-05T17:00:49,394 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,395 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,395 Please make sure that 'biobb_adapters.cwl.biobb_model' is included as a package by using 2023-04-05T17:00:49,396 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,396 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,396 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,397 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,397 documentation page. 2023-04-05T17:00:49,399 !! 2023-04-05T17:00:49,400 check.warn(importable) 2023-04-05T17:00:49,400 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_model.model' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,400 !! 2023-04-05T17:00:49,401 ############################ 2023-04-05T17:00:49,402 # Package would be ignored # 2023-04-05T17:00:49,402 ############################ 2023-04-05T17:00:49,402 Python recognizes 'biobb_adapters.cwl.biobb_model.model' as an importable package, 2023-04-05T17:00:49,403 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,404 'biobb_adapters.cwl.biobb_model.model' has been automatically added to the distribution only 2023-04-05T17:00:49,404 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,404 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,405 Please make sure that 'biobb_adapters.cwl.biobb_model.model' is included as a package by using 2023-04-05T17:00:49,405 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,406 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,406 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,407 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,407 documentation page. 2023-04-05T17:00:49,408 !! 2023-04-05T17:00:49,409 check.warn(importable) 2023-04-05T17:00:49,409 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_model.test' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,410 !! 2023-04-05T17:00:49,411 ############################ 2023-04-05T17:00:49,411 # Package would be ignored # 2023-04-05T17:00:49,411 ############################ 2023-04-05T17:00:49,411 Python recognizes 'biobb_adapters.cwl.biobb_model.test' as an importable package, 2023-04-05T17:00:49,412 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,412 'biobb_adapters.cwl.biobb_model.test' has been automatically added to the distribution only 2023-04-05T17:00:49,413 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,413 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,414 Please make sure that 'biobb_adapters.cwl.biobb_model.test' is included as a package by using 2023-04-05T17:00:49,414 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,414 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,415 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,415 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,416 documentation page. 2023-04-05T17:00:49,417 !! 2023-04-05T17:00:49,417 check.warn(importable) 2023-04-05T17:00:49,418 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_model.test.data.model' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,418 !! 2023-04-05T17:00:49,419 ############################ 2023-04-05T17:00:49,419 # Package would be ignored # 2023-04-05T17:00:49,420 ############################ 2023-04-05T17:00:49,420 Python recognizes 'biobb_adapters.cwl.biobb_model.test.data.model' as an importable package, 2023-04-05T17:00:49,420 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,421 'biobb_adapters.cwl.biobb_model.test.data.model' has been automatically added to the distribution only 2023-04-05T17:00:49,421 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,422 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,422 Please make sure that 'biobb_adapters.cwl.biobb_model.test.data.model' is included as a package by using 2023-04-05T17:00:49,423 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,423 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,423 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,424 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,424 documentation page. 2023-04-05T17:00:49,425 !! 2023-04-05T17:00:49,426 check.warn(importable) 2023-04-05T17:00:49,426 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_model.test.model' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,426 !! 2023-04-05T17:00:49,427 ############################ 2023-04-05T17:00:49,428 # Package would be ignored # 2023-04-05T17:00:49,428 ############################ 2023-04-05T17:00:49,429 Python recognizes 'biobb_adapters.cwl.biobb_model.test.model' as an importable package, 2023-04-05T17:00:49,429 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,430 'biobb_adapters.cwl.biobb_model.test.model' has been automatically added to the distribution only 2023-04-05T17:00:49,430 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,430 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,431 Please make sure that 'biobb_adapters.cwl.biobb_model.test.model' is included as a package by using 2023-04-05T17:00:49,431 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,431 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,432 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,432 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,433 documentation page. 2023-04-05T17:00:49,434 !! 2023-04-05T17:00:49,434 check.warn(importable) 2023-04-05T17:00:49,435 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_pmx' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,435 !! 2023-04-05T17:00:49,436 ############################ 2023-04-05T17:00:49,436 # Package would be ignored # 2023-04-05T17:00:49,437 ############################ 2023-04-05T17:00:49,437 Python recognizes 'biobb_adapters.cwl.biobb_pmx' as an importable package, 2023-04-05T17:00:49,437 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,438 'biobb_adapters.cwl.biobb_pmx' has been automatically added to the distribution only 2023-04-05T17:00:49,438 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,439 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,439 Please make sure that 'biobb_adapters.cwl.biobb_pmx' is included as a package by using 2023-04-05T17:00:49,440 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,440 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,440 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,441 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,441 documentation page. 2023-04-05T17:00:49,442 !! 2023-04-05T17:00:49,443 check.warn(importable) 2023-04-05T17:00:49,443 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_pmx.pmx' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,443 !! 2023-04-05T17:00:49,444 ############################ 2023-04-05T17:00:49,445 # Package would be ignored # 2023-04-05T17:00:49,445 ############################ 2023-04-05T17:00:49,445 Python recognizes 'biobb_adapters.cwl.biobb_pmx.pmx' as an importable package, 2023-04-05T17:00:49,446 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,446 'biobb_adapters.cwl.biobb_pmx.pmx' has been automatically added to the distribution only 2023-04-05T17:00:49,447 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,447 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,448 Please make sure that 'biobb_adapters.cwl.biobb_pmx.pmx' is included as a package by using 2023-04-05T17:00:49,448 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,449 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,449 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,450 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,450 documentation page. 2023-04-05T17:00:49,451 !! 2023-04-05T17:00:49,451 check.warn(importable) 2023-04-05T17:00:49,452 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_structure_utils' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,452 !! 2023-04-05T17:00:49,453 ############################ 2023-04-05T17:00:49,453 # Package would be ignored # 2023-04-05T17:00:49,454 ############################ 2023-04-05T17:00:49,454 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils' as an importable package, 2023-04-05T17:00:49,454 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,455 'biobb_adapters.cwl.biobb_structure_utils' has been automatically added to the distribution only 2023-04-05T17:00:49,455 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,456 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,457 Please make sure that 'biobb_adapters.cwl.biobb_structure_utils' is included as a package by using 2023-04-05T17:00:49,457 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,457 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,458 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,458 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,459 documentation page. 2023-04-05T17:00:49,460 !! 2023-04-05T17:00:49,460 check.warn(importable) 2023-04-05T17:00:49,461 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_structure_utils.test' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,461 !! 2023-04-05T17:00:49,462 ############################ 2023-04-05T17:00:49,462 # Package would be ignored # 2023-04-05T17:00:49,462 ############################ 2023-04-05T17:00:49,463 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils.test' as an importable package, 2023-04-05T17:00:49,463 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,464 'biobb_adapters.cwl.biobb_structure_utils.test' has been automatically added to the distribution only 2023-04-05T17:00:49,464 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,464 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,465 Please make sure that 'biobb_adapters.cwl.biobb_structure_utils.test' is included as a package by using 2023-04-05T17:00:49,465 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,466 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,466 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,467 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,467 documentation page. 2023-04-05T17:00:49,468 !! 2023-04-05T17:00:49,469 check.warn(importable) 2023-04-05T17:00:49,469 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_structure_utils.test.data' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,469 !! 2023-04-05T17:00:49,470 ############################ 2023-04-05T17:00:49,471 # Package would be ignored # 2023-04-05T17:00:49,471 ############################ 2023-04-05T17:00:49,471 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils.test.data' as an importable package, 2023-04-05T17:00:49,472 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,472 'biobb_adapters.cwl.biobb_structure_utils.test.data' has been automatically added to the distribution only 2023-04-05T17:00:49,473 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,473 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,473 Please make sure that 'biobb_adapters.cwl.biobb_structure_utils.test.data' is included as a package by using 2023-04-05T17:00:49,474 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,474 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,474 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,475 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,475 documentation page. 2023-04-05T17:00:49,476 !! 2023-04-05T17:00:49,477 check.warn(importable) 2023-04-05T17:00:49,477 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_structure_utils.test.utils' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,478 !! 2023-04-05T17:00:49,479 ############################ 2023-04-05T17:00:49,479 # Package would be ignored # 2023-04-05T17:00:49,479 ############################ 2023-04-05T17:00:49,480 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils.test.utils' as an importable package, 2023-04-05T17:00:49,480 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,481 'biobb_adapters.cwl.biobb_structure_utils.test.utils' has been automatically added to the distribution only 2023-04-05T17:00:49,481 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,481 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,482 Please make sure that 'biobb_adapters.cwl.biobb_structure_utils.test.utils' is included as a package by using 2023-04-05T17:00:49,482 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,483 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,483 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,484 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,484 documentation page. 2023-04-05T17:00:49,485 !! 2023-04-05T17:00:49,485 check.warn(importable) 2023-04-05T17:00:49,486 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_structure_utils.utils' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,486 !! 2023-04-05T17:00:49,487 ############################ 2023-04-05T17:00:49,487 # Package would be ignored # 2023-04-05T17:00:49,488 ############################ 2023-04-05T17:00:49,488 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils.utils' as an importable package, 2023-04-05T17:00:49,488 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,489 'biobb_adapters.cwl.biobb_structure_utils.utils' has been automatically added to the distribution only 2023-04-05T17:00:49,489 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,490 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,490 Please make sure that 'biobb_adapters.cwl.biobb_structure_utils.utils' is included as a package by using 2023-04-05T17:00:49,491 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,491 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,491 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,492 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,492 documentation page. 2023-04-05T17:00:49,493 !! 2023-04-05T17:00:49,494 check.warn(importable) 2023-04-05T17:00:49,494 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_vs' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,495 !! 2023-04-05T17:00:49,496 ############################ 2023-04-05T17:00:49,496 # Package would be ignored # 2023-04-05T17:00:49,496 ############################ 2023-04-05T17:00:49,496 Python recognizes 'biobb_adapters.cwl.biobb_vs' as an importable package, 2023-04-05T17:00:49,497 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,497 'biobb_adapters.cwl.biobb_vs' has been automatically added to the distribution only 2023-04-05T17:00:49,498 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,498 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,499 Please make sure that 'biobb_adapters.cwl.biobb_vs' is included as a package by using 2023-04-05T17:00:49,499 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,499 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,500 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,500 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,501 documentation page. 2023-04-05T17:00:49,502 !! 2023-04-05T17:00:49,502 check.warn(importable) 2023-04-05T17:00:49,503 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_vs.fpocket' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,503 !! 2023-04-05T17:00:49,504 ############################ 2023-04-05T17:00:49,504 # Package would be ignored # 2023-04-05T17:00:49,505 ############################ 2023-04-05T17:00:49,505 Python recognizes 'biobb_adapters.cwl.biobb_vs.fpocket' as an importable package, 2023-04-05T17:00:49,505 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,506 'biobb_adapters.cwl.biobb_vs.fpocket' has been automatically added to the distribution only 2023-04-05T17:00:49,506 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,507 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,508 Please make sure that 'biobb_adapters.cwl.biobb_vs.fpocket' is included as a package by using 2023-04-05T17:00:49,508 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,508 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,509 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,509 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,510 documentation page. 2023-04-05T17:00:49,511 !! 2023-04-05T17:00:49,511 check.warn(importable) 2023-04-05T17:00:49,512 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_vs.utils' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,512 !! 2023-04-05T17:00:49,513 ############################ 2023-04-05T17:00:49,513 # Package would be ignored # 2023-04-05T17:00:49,513 ############################ 2023-04-05T17:00:49,514 Python recognizes 'biobb_adapters.cwl.biobb_vs.utils' as an importable package, 2023-04-05T17:00:49,514 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,515 'biobb_adapters.cwl.biobb_vs.utils' has been automatically added to the distribution only 2023-04-05T17:00:49,515 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,515 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,516 Please make sure that 'biobb_adapters.cwl.biobb_vs.utils' is included as a package by using 2023-04-05T17:00:49,516 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,517 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,517 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,517 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,518 documentation page. 2023-04-05T17:00:49,519 !! 2023-04-05T17:00:49,519 check.warn(importable) 2023-04-05T17:00:49,520 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_vs.vina' as data is deprecated, please list it in `packages`. 2023-04-05T17:00:49,520 !! 2023-04-05T17:00:49,521 ############################ 2023-04-05T17:00:49,521 # Package would be ignored # 2023-04-05T17:00:49,521 ############################ 2023-04-05T17:00:49,522 Python recognizes 'biobb_adapters.cwl.biobb_vs.vina' as an importable package, 2023-04-05T17:00:49,522 but it is not listed in the `packages` configuration of setuptools. 2023-04-05T17:00:49,523 'biobb_adapters.cwl.biobb_vs.vina' has been automatically added to the distribution only 2023-04-05T17:00:49,523 because it may contain data files, but this behavior is likely to change 2023-04-05T17:00:49,523 in future versions of setuptools (and therefore is considered deprecated). 2023-04-05T17:00:49,524 Please make sure that 'biobb_adapters.cwl.biobb_vs.vina' is included as a package by using 2023-04-05T17:00:49,524 the `packages` configuration field or the proper discovery methods 2023-04-05T17:00:49,524 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-05T17:00:49,525 instead of `find_packages(...)`/`find:`). 2023-04-05T17:00:49,525 You can read more about "package discovery" and "data files" on setuptools 2023-04-05T17:00:49,525 documentation page. 2023-04-05T17:00:49,526 !! 2023-04-05T17:00:49,527 check.warn(importable) 2023-04-05T17:00:49,527 creating build/lib/biobb_adapters/cwl 2023-04-05T17:00:49,527 creating build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,528 copying biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,528 copying biobb_adapters/cwl/biobb_amber/cestats_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,528 copying biobb_adapters/cwl/biobb_amber/cphstats_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,529 copying biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,529 copying biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,529 copying biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,530 copying biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,530 copying biobb_adapters/cwl/biobb_amber/leap_solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,530 copying biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,530 copying biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,531 copying biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,531 copying biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,531 copying biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,532 copying biobb_adapters/cwl/biobb_amber/process_mdout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,532 copying biobb_adapters/cwl/biobb_amber/process_minout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,532 copying biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2023-04-05T17:00:49,533 creating build/lib/biobb_adapters/cwl/biobb_amber/ambpdb 2023-04-05T17:00:49,533 copying biobb_adapters/cwl/biobb_amber/ambpdb/amber_to_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/ambpdb 2023-04-05T17:00:49,533 creating build/lib/biobb_adapters/cwl/biobb_amber/cpptraj 2023-04-05T17:00:49,533 copying biobb_adapters/cwl/biobb_amber/cpptraj/cpptraj_randomize_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/cpptraj 2023-04-05T17:00:49,534 creating build/lib/biobb_adapters/cwl/biobb_amber/leap 2023-04-05T17:00:49,534 copying biobb_adapters/cwl/biobb_amber/leap/leap_add_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/leap 2023-04-05T17:00:49,534 copying biobb_adapters/cwl/biobb_amber/leap/leap_build_linear_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/leap 2023-04-05T17:00:49,535 copying biobb_adapters/cwl/biobb_amber/leap/leap_gen_top.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/leap 2023-04-05T17:00:49,535 copying biobb_adapters/cwl/biobb_amber/leap/leap_solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/leap 2023-04-05T17:00:49,535 creating build/lib/biobb_adapters/cwl/biobb_amber/nap 2023-04-05T17:00:49,535 copying biobb_adapters/cwl/biobb_amber/nap/nab_build_dna_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/nap 2023-04-05T17:00:49,536 creating build/lib/biobb_adapters/cwl/biobb_amber/parmed 2023-04-05T17:00:49,536 copying biobb_adapters/cwl/biobb_amber/parmed/parmed_cpinutil.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/parmed 2023-04-05T17:00:49,536 copying biobb_adapters/cwl/biobb_amber/parmed/parmed_hmassrepartition.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/parmed 2023-04-05T17:00:49,537 creating build/lib/biobb_adapters/cwl/biobb_amber/pdb4amber 2023-04-05T17:00:49,537 copying biobb_adapters/cwl/biobb_amber/pdb4amber/pdb4amber.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/pdb4amber 2023-04-05T17:00:49,537 creating build/lib/biobb_adapters/cwl/biobb_amber/pmemd 2023-04-05T17:00:49,537 copying biobb_adapters/cwl/biobb_amber/pmemd/pmemd_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/pmemd 2023-04-05T17:00:49,538 creating build/lib/biobb_adapters/cwl/biobb_amber/process 2023-04-05T17:00:49,538 copying biobb_adapters/cwl/biobb_amber/process/process_mdout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/process 2023-04-05T17:00:49,538 copying biobb_adapters/cwl/biobb_amber/process/process_minout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/process 2023-04-05T17:00:49,539 creating build/lib/biobb_adapters/cwl/biobb_amber/sander 2023-04-05T17:00:49,539 copying biobb_adapters/cwl/biobb_amber/sander/sander_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/sander 2023-04-05T17:00:49,539 creating build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,540 copying biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,540 copying biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,540 copying biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,540 copying biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,541 copying biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,541 copying biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,541 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,542 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,542 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,542 copying biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,543 copying biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,543 copying biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,543 copying biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,543 copying biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,544 copying biobb_adapters/cwl/biobb_analysis/gmx_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,544 copying biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,544 copying biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,545 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,545 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,545 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:49,546 creating build/lib/biobb_adapters/cwl/biobb_analysis/test 2023-04-05T17:00:49,546 copying biobb_adapters/cwl/biobb_analysis/test/cwl_unitest.sh -> build/lib/biobb_adapters/cwl/biobb_analysis/test 2023-04-05T17:00:49,546 creating build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:49,546 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_average.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:49,547 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_bfactor.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:49,547 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_convert.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:49,547 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_dry.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:49,548 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_image.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:49,548 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_mask.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:49,548 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rgyr.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:49,549 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rms.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:49,549 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rmsf.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:49,549 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_slice.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:49,550 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_snapshot.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:49,550 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_strip.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:49,550 creating build/lib/biobb_adapters/cwl/biobb_analysis/test/data 2023-04-05T17:00:49,550 creating build/lib/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2023-04-05T17:00:49,551 copying biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.parm.top -> build/lib/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2023-04-05T17:00:49,729 copying biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.traj.dcd -> build/lib/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2023-04-05T17:00:50,056 creating build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2023-04-05T17:00:50,058 copying biobb_adapters/cwl/biobb_analysis/test/data/gromacs/energy.edr -> build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2023-04-05T17:00:50,063 copying biobb_adapters/cwl/biobb_analysis/test/data/gromacs/topology.tpr -> build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2023-04-05T17:00:50,117 copying biobb_adapters/cwl/biobb_analysis/test/data/gromacs/trajectory.trr -> build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2023-04-05T17:00:50,438 creating build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:50,440 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_cluster.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:50,444 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_energy.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:50,448 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_image.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:50,453 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rgyr.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:50,457 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rms.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:50,461 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:50,466 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str_ens.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:50,470 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_trj.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:50,474 creating build/lib/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:00:50,475 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:00:50,480 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:00:50,484 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:00:50,488 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:00:50,492 copying biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:00:50,496 copying biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:00:50,500 copying biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:00:50,505 copying biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:00:50,509 copying biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:00:50,513 copying biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:00:50,517 creating build/lib/biobb_adapters/cwl/biobb_chemistry/acpype 2023-04-05T17:00:50,519 copying biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_ac.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/acpype 2023-04-05T17:00:50,524 copying biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_cns.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/acpype 2023-04-05T17:00:50,529 copying biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/acpype 2023-04-05T17:00:50,533 copying biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx_opls.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/acpype 2023-04-05T17:00:50,537 creating build/lib/biobb_adapters/cwl/biobb_chemistry/ambertools 2023-04-05T17:00:50,539 copying biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/ambertools 2023-04-05T17:00:50,543 copying biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/ambertools 2023-04-05T17:00:50,547 creating build/lib/biobb_adapters/cwl/biobb_chemistry/babelm 2023-04-05T17:00:50,549 copying biobb_adapters/cwl/biobb_chemistry/babelm/babel_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/babelm 2023-04-05T17:00:50,553 copying biobb_adapters/cwl/biobb_chemistry/babelm/babel_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/babelm 2023-04-05T17:00:50,557 copying biobb_adapters/cwl/biobb_chemistry/babelm/babel_minimize.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/babelm 2023-04-05T17:00:50,561 copying biobb_adapters/cwl/biobb_chemistry/babelm/babel_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/babelm 2023-04-05T17:00:50,565 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test 2023-04-05T17:00:50,566 copying biobb_adapters/cwl/biobb_chemistry/test/cwl_unitest.sh -> build/lib/biobb_adapters/cwl/biobb_chemistry/test 2023-04-05T17:00:50,570 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype 2023-04-05T17:00:50,572 copying biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_ac.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype 2023-04-05T17:00:50,576 copying biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_cns.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype 2023-04-05T17:00:50,580 copying biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype 2023-04-05T17:00:50,584 copying biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx_opls.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype 2023-04-05T17:00:50,588 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2023-04-05T17:00:50,590 copying biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_add_hydrogens.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2023-04-05T17:00:50,594 copying biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_remove_hydrogens.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2023-04-05T17:00:50,597 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm 2023-04-05T17:00:50,599 copying biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_add_hydrogens.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm 2023-04-05T17:00:50,604 copying biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_convert.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm 2023-04-05T17:00:50,607 copying biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_minimize.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm 2023-04-05T17:00:50,611 copying biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_remove_hydrogens.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm 2023-04-05T17:00:50,615 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/data 2023-04-05T17:00:50,616 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2023-04-05T17:00:50,618 copying biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.mol2 -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2023-04-05T17:00:50,622 copying biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2023-04-05T17:00:50,627 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2023-04-05T17:00:50,628 copying biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.H.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2023-04-05T17:00:50,633 copying biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.no.H.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2023-04-05T17:00:50,637 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2023-04-05T17:00:50,639 copying biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.H.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2023-04-05T17:00:50,644 copying biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.minimize.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2023-04-05T17:00:50,648 copying biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.no.H.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2023-04-05T17:00:50,652 copying biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.smi -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2023-04-05T17:00:50,655 creating build/lib/biobb_adapters/cwl/biobb_cmip 2023-04-05T17:00:50,657 copying biobb_adapters/cwl/biobb_cmip/cmip.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2023-04-05T17:00:50,662 copying biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2023-04-05T17:00:50,666 copying biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2023-04-05T17:00:50,670 copying biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2023-04-05T17:00:50,674 copying biobb_adapters/cwl/biobb_cmip/titration.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2023-04-05T17:00:50,678 creating build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,680 copying biobb_adapters/cwl/biobb_dna/average_stiffness.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,684 copying biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,689 copying biobb_adapters/cwl/biobb_dna/biobb_canal.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,693 copying biobb_adapters/cwl/biobb_dna/biobb_canion.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,697 copying biobb_adapters/cwl/biobb_dna/biobb_curves.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,701 copying biobb_adapters/cwl/biobb_dna/bipopulations.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,706 copying biobb_adapters/cwl/biobb_dna/canonicalag.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,710 copying biobb_adapters/cwl/biobb_dna/dna_averages.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,714 copying biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,718 copying biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,723 copying biobb_adapters/cwl/biobb_dna/interbpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,727 copying biobb_adapters/cwl/biobb_dna/interhpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,732 copying biobb_adapters/cwl/biobb_dna/interseqcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,736 copying biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,741 copying biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,746 copying biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,750 copying biobb_adapters/cwl/biobb_dna/puckering.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2023-04-05T17:00:50,754 creating build/lib/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:00:50,756 copying biobb_adapters/cwl/biobb_gromacs/append_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:00:50,760 copying biobb_adapters/cwl/biobb_gromacs/editconf.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:00:50,764 copying biobb_adapters/cwl/biobb_gromacs/genion.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:00:50,769 copying biobb_adapters/cwl/biobb_gromacs/genrestr.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:00:50,773 copying biobb_adapters/cwl/biobb_gromacs/gmxselect.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:00:50,777 copying biobb_adapters/cwl/biobb_gromacs/grompp.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:00:50,781 copying biobb_adapters/cwl/biobb_gromacs/grompp_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:00:50,786 copying biobb_adapters/cwl/biobb_gromacs/make_ndx.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:00:50,790 copying biobb_adapters/cwl/biobb_gromacs/mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:00:50,796 copying biobb_adapters/cwl/biobb_gromacs/ndx2resttop.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:00:50,800 copying biobb_adapters/cwl/biobb_gromacs/pdb2gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:00:50,804 copying biobb_adapters/cwl/biobb_gromacs/solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:00:50,809 copying biobb_adapters/cwl/biobb_gromacs/trjcat.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:00:50,813 creating build/lib/biobb_adapters/cwl/biobb_io 2023-04-05T17:00:50,815 copying biobb_adapters/cwl/biobb_io/alphafold.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2023-04-05T17:00:50,819 copying biobb_adapters/cwl/biobb_io/api_binding_site.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2023-04-05T17:00:50,823 copying biobb_adapters/cwl/biobb_io/canonical_fasta.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2023-04-05T17:00:50,827 copying biobb_adapters/cwl/biobb_io/drugbank.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2023-04-05T17:00:50,832 copying biobb_adapters/cwl/biobb_io/ideal_sdf.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2023-04-05T17:00:50,836 copying biobb_adapters/cwl/biobb_io/ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2023-04-05T17:00:50,840 copying biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2023-04-05T17:00:50,844 copying biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2023-04-05T17:00:50,848 copying biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2023-04-05T17:00:50,852 copying biobb_adapters/cwl/biobb_io/mmcif.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2023-04-05T17:00:50,856 copying biobb_adapters/cwl/biobb_io/pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2023-04-05T17:00:50,861 copying biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2023-04-05T17:00:50,865 copying biobb_adapters/cwl/biobb_io/pdb_variants.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2023-04-05T17:00:50,869 copying biobb_adapters/cwl/biobb_io/structure_info.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2023-04-05T17:00:50,873 creating build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:00:50,875 copying biobb_adapters/cwl/biobb_io/mmb_api/binding_site.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:00:50,880 copying biobb_adapters/cwl/biobb_io/mmb_api/canonical_fasta.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:00:50,884 copying biobb_adapters/cwl/biobb_io/mmb_api/drugbank.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:00:50,889 copying biobb_adapters/cwl/biobb_io/mmb_api/ideal_sdf.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:00:50,895 copying biobb_adapters/cwl/biobb_io/mmb_api/ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:00:50,901 copying biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:00:50,905 copying biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_list.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:00:50,909 copying biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_search.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:00:50,913 copying biobb_adapters/cwl/biobb_io/mmb_api/mmcif.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:00:50,918 copying biobb_adapters/cwl/biobb_io/mmb_api/pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:00:50,922 copying biobb_adapters/cwl/biobb_io/mmb_api/pdb_cluster_zip.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:00:50,926 copying biobb_adapters/cwl/biobb_io/mmb_api/pdb_variants.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:00:50,930 copying biobb_adapters/cwl/biobb_io/mmb_api/structure_info.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:00:50,935 creating build/lib/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:50,936 copying biobb_adapters/cwl/biobb_md/append_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:50,943 copying biobb_adapters/cwl/biobb_md/editconf.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:50,947 copying biobb_adapters/cwl/biobb_md/genion.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:50,952 copying biobb_adapters/cwl/biobb_md/genrestr.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:50,956 copying biobb_adapters/cwl/biobb_md/gmxselect.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:50,961 copying biobb_adapters/cwl/biobb_md/grompp.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:50,965 copying biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:50,970 copying biobb_adapters/cwl/biobb_md/make_ndx.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:50,975 copying biobb_adapters/cwl/biobb_md/mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:50,980 copying biobb_adapters/cwl/biobb_md/ndx2resttop.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:50,985 copying biobb_adapters/cwl/biobb_md/pdb2gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:50,991 copying biobb_adapters/cwl/biobb_md/solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:50,996 creating build/lib/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:00:50,997 copying biobb_adapters/cwl/biobb_md/gromacs/editconf.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:00:51,002 copying biobb_adapters/cwl/biobb_md/gromacs/genion.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:00:51,006 copying biobb_adapters/cwl/biobb_md/gromacs/genrestr.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:00:51,010 copying biobb_adapters/cwl/biobb_md/gromacs/grompp.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:00:51,014 copying biobb_adapters/cwl/biobb_md/gromacs/make_ndx.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:00:51,018 copying biobb_adapters/cwl/biobb_md/gromacs/mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:00:51,023 copying biobb_adapters/cwl/biobb_md/gromacs/pdb2gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:00:51,027 copying biobb_adapters/cwl/biobb_md/gromacs/solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:00:51,031 creating build/lib/biobb_adapters/cwl/biobb_md/gromacs_extra 2023-04-05T17:00:51,033 copying biobb_adapters/cwl/biobb_md/gromacs_extra/ndx2resttop.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs_extra 2023-04-05T17:00:51,037 creating build/lib/biobb_adapters/cwl/biobb_md/test 2023-04-05T17:00:51,039 copying biobb_adapters/cwl/biobb_md/test/cwl_unitest.sh -> build/lib/biobb_adapters/cwl/biobb_md/test 2023-04-05T17:00:51,043 creating build/lib/biobb_adapters/cwl/biobb_md/test/data 2023-04-05T17:00:51,044 creating build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:51,046 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:51,296 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.trr -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:51,440 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/editconf.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:51,448 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.tpr -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:51,561 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.zip -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:51,586 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:51,764 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.ndx -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:51,811 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.zip -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:51,835 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:52,001 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.zip -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:52,026 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/make_ndx.tpr -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:52,342 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/mdrun.tpr -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:52,443 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/pyruvate_kinase.pdb -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:52,561 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:52,685 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.trr -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:52,810 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:52,818 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.zip -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:52,842 creating build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2023-04-05T17:00:52,843 copying biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.ndx -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2023-04-05T17:00:53,396 copying biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.zip -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2023-04-05T17:00:53,769 creating build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:00:53,771 copying biobb_adapters/cwl/biobb_md/test/gromacs/editconf.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:00:53,775 copying biobb_adapters/cwl/biobb_md/test/gromacs/genion.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:00:53,780 copying biobb_adapters/cwl/biobb_md/test/gromacs/genrestr.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:00:53,783 copying biobb_adapters/cwl/biobb_md/test/gromacs/grompp.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:00:53,787 copying biobb_adapters/cwl/biobb_md/test/gromacs/make_ndx.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:00:53,792 copying biobb_adapters/cwl/biobb_md/test/gromacs/mdrun.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:00:53,796 copying biobb_adapters/cwl/biobb_md/test/gromacs/pdb2gmx.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:00:53,800 copying biobb_adapters/cwl/biobb_md/test/gromacs/solvate.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:00:53,804 creating build/lib/biobb_adapters/cwl/biobb_md/test/gromacs_extra 2023-04-05T17:00:53,805 copying biobb_adapters/cwl/biobb_md/test/gromacs_extra/ndx2resttop.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs_extra 2023-04-05T17:00:53,809 creating build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,811 copying biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,816 copying biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,820 copying biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,824 copying biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,828 copying biobb_adapters/cwl/biobb_ml/classification_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,832 copying biobb_adapters/cwl/biobb_ml/clustering_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,836 copying biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,841 copying biobb_adapters/cwl/biobb_ml/dbscan.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,845 copying biobb_adapters/cwl/biobb_ml/decision_tree.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,849 copying biobb_adapters/cwl/biobb_ml/dendrogram.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,853 copying biobb_adapters/cwl/biobb_ml/drop_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,857 copying biobb_adapters/cwl/biobb_ml/dummy_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,861 copying biobb_adapters/cwl/biobb_ml/k_means.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,866 copying biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,870 copying biobb_adapters/cwl/biobb_ml/k_neighbors.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,875 copying biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,879 copying biobb_adapters/cwl/biobb_ml/linear_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,883 copying biobb_adapters/cwl/biobb_ml/logistic_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,887 copying biobb_adapters/cwl/biobb_ml/map_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,891 copying biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,895 copying biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,899 copying biobb_adapters/cwl/biobb_ml/oversampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,904 copying biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,908 copying biobb_adapters/cwl/biobb_ml/pls_components.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,912 copying biobb_adapters/cwl/biobb_ml/pls_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,916 copying biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,920 copying biobb_adapters/cwl/biobb_ml/principal_component.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,924 copying biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,929 copying biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,933 copying biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,937 copying biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,941 copying biobb_adapters/cwl/biobb_ml/regression_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,945 copying biobb_adapters/cwl/biobb_ml/resampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,949 copying biobb_adapters/cwl/biobb_ml/scale_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,953 copying biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,957 copying biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,961 copying biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,966 copying biobb_adapters/cwl/biobb_ml/undersampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2023-04-05T17:00:53,970 creating build/lib/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:00:53,972 copying biobb_adapters/cwl/biobb_ml/classification/classification_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:00:53,976 copying biobb_adapters/cwl/biobb_ml/classification/decision_tree.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:00:53,981 copying biobb_adapters/cwl/biobb_ml/classification/k_neighbors.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:00:53,985 copying biobb_adapters/cwl/biobb_ml/classification/k_neighbors_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:00:53,989 copying biobb_adapters/cwl/biobb_ml/classification/logistic_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:00:53,994 copying biobb_adapters/cwl/biobb_ml/classification/random_forest_classifier.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:00:53,999 copying biobb_adapters/cwl/biobb_ml/classification/support_vector_machine.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:00:54,004 creating build/lib/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:00:54,005 copying biobb_adapters/cwl/biobb_ml/clustering/agglomerative_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:00:54,010 copying biobb_adapters/cwl/biobb_ml/clustering/agglomerative_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:00:54,014 copying biobb_adapters/cwl/biobb_ml/clustering/clustering_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:00:54,018 copying biobb_adapters/cwl/biobb_ml/clustering/dbscan.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:00:54,022 copying biobb_adapters/cwl/biobb_ml/clustering/k_means.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:00:54,026 copying biobb_adapters/cwl/biobb_ml/clustering/k_means_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:00:54,030 copying biobb_adapters/cwl/biobb_ml/clustering/spectral_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:00:54,034 copying biobb_adapters/cwl/biobb_ml/clustering/spectral_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:00:54,039 creating build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2023-04-05T17:00:54,041 copying biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_components.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2023-04-05T17:00:54,045 copying biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2023-04-05T17:00:54,050 copying biobb_adapters/cwl/biobb_ml/dimensionality_reduction/principal_component.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2023-04-05T17:00:54,055 creating build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2023-04-05T17:00:54,056 copying biobb_adapters/cwl/biobb_ml/neural_networks/autoencoder_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2023-04-05T17:00:54,061 copying biobb_adapters/cwl/biobb_ml/neural_networks/classification_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2023-04-05T17:00:54,065 copying biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_decode.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2023-04-05T17:00:54,070 copying biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2023-04-05T17:00:54,074 copying biobb_adapters/cwl/biobb_ml/neural_networks/recurrent_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2023-04-05T17:00:54,079 copying biobb_adapters/cwl/biobb_ml/neural_networks/regression_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2023-04-05T17:00:54,083 creating build/lib/biobb_adapters/cwl/biobb_ml/regression 2023-04-05T17:00:54,084 copying biobb_adapters/cwl/biobb_ml/regression/linear_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/regression 2023-04-05T17:00:54,089 copying biobb_adapters/cwl/biobb_ml/regression/polynomial_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/regression 2023-04-05T17:00:54,093 copying biobb_adapters/cwl/biobb_ml/regression/random_forest_regressor.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/regression 2023-04-05T17:00:54,097 copying biobb_adapters/cwl/biobb_ml/regression/regression_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/regression 2023-04-05T17:00:54,101 creating build/lib/biobb_adapters/cwl/biobb_ml/resampling 2023-04-05T17:00:54,103 copying biobb_adapters/cwl/biobb_ml/resampling/oversampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/resampling 2023-04-05T17:00:54,107 copying biobb_adapters/cwl/biobb_ml/resampling/resampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/resampling 2023-04-05T17:00:54,112 copying biobb_adapters/cwl/biobb_ml/resampling/undersampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/resampling 2023-04-05T17:00:54,117 creating build/lib/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:00:54,119 copying biobb_adapters/cwl/biobb_ml/utils/correlation_matrix.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:00:54,124 copying biobb_adapters/cwl/biobb_ml/utils/dendrogram.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:00:54,129 copying biobb_adapters/cwl/biobb_ml/utils/drop_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:00:54,133 copying biobb_adapters/cwl/biobb_ml/utils/dummy_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:00:54,138 copying biobb_adapters/cwl/biobb_ml/utils/map_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:00:54,143 copying biobb_adapters/cwl/biobb_ml/utils/pairwise_comparison.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:00:54,147 copying biobb_adapters/cwl/biobb_ml/utils/scale_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:00:54,152 creating build/lib/biobb_adapters/cwl/biobb_model 2023-04-05T17:00:54,154 copying biobb_adapters/cwl/biobb_model/checking_log.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2023-04-05T17:00:54,159 copying biobb_adapters/cwl/biobb_model/fix_altlocs.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2023-04-05T17:00:54,163 copying biobb_adapters/cwl/biobb_model/fix_amides.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2023-04-05T17:00:54,168 copying biobb_adapters/cwl/biobb_model/fix_backbone.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2023-04-05T17:00:54,173 copying biobb_adapters/cwl/biobb_model/fix_chirality.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2023-04-05T17:00:54,177 copying biobb_adapters/cwl/biobb_model/fix_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2023-04-05T17:00:54,182 copying biobb_adapters/cwl/biobb_model/fix_side_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2023-04-05T17:00:54,186 copying biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2023-04-05T17:00:54,191 copying biobb_adapters/cwl/biobb_model/mutate.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2023-04-05T17:00:54,196 creating build/lib/biobb_adapters/cwl/biobb_model/model 2023-04-05T17:00:54,198 copying biobb_adapters/cwl/biobb_model/model/checking_log.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2023-04-05T17:00:54,203 copying biobb_adapters/cwl/biobb_model/model/fix_amides.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2023-04-05T17:00:54,207 copying biobb_adapters/cwl/biobb_model/model/fix_backbone.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2023-04-05T17:00:54,212 copying biobb_adapters/cwl/biobb_model/model/fix_chirality.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2023-04-05T17:00:54,217 copying biobb_adapters/cwl/biobb_model/model/fix_side_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2023-04-05T17:00:54,222 copying biobb_adapters/cwl/biobb_model/model/mutate.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2023-04-05T17:00:54,226 creating build/lib/biobb_adapters/cwl/biobb_model/test 2023-04-05T17:00:54,228 copying biobb_adapters/cwl/biobb_model/test/cwl_unitest.sh -> build/lib/biobb_adapters/cwl/biobb_model/test 2023-04-05T17:00:54,233 creating build/lib/biobb_adapters/cwl/biobb_model/test/data 2023-04-05T17:00:54,234 creating build/lib/biobb_adapters/cwl/biobb_model/test/data/model 2023-04-05T17:00:54,237 copying biobb_adapters/cwl/biobb_model/test/data/model/2ki5.pdb -> build/lib/biobb_adapters/cwl/biobb_model/test/data/model 2023-04-05T17:00:54,261 creating build/lib/biobb_adapters/cwl/biobb_model/test/model 2023-04-05T17:00:54,264 copying biobb_adapters/cwl/biobb_model/test/model/fix_side_chain.yml -> build/lib/biobb_adapters/cwl/biobb_model/test/model 2023-04-05T17:00:54,268 copying biobb_adapters/cwl/biobb_model/test/model/mutate.yml -> build/lib/biobb_adapters/cwl/biobb_model/test/model 2023-04-05T17:00:54,273 creating build/lib/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:54,275 copying biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:54,280 copying biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:54,286 copying biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:54,290 copying biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:54,295 copying biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:54,300 copying biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:54,305 copying biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:54,310 creating build/lib/biobb_adapters/cwl/biobb_pmx/pmx 2023-04-05T17:00:54,312 copying biobb_adapters/cwl/biobb_pmx/pmx/pmxanalyse.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx/pmx 2023-04-05T17:00:54,317 copying biobb_adapters/cwl/biobb_pmx/pmx/pmxgentop.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx/pmx 2023-04-05T17:00:54,322 copying biobb_adapters/cwl/biobb_pmx/pmx/pmxmutate.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx/pmx 2023-04-05T17:00:54,326 creating build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,328 copying biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,333 copying biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,337 copying biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,342 copying biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,346 copying biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,350 copying biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,353 copying biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,357 copying biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,361 copying biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,365 copying biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,369 copying biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,373 copying biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,376 copying biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,380 copying biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,384 copying biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:00:54,388 creating build/lib/biobb_adapters/cwl/biobb_structure_utils/test 2023-04-05T17:00:54,390 copying biobb_adapters/cwl/biobb_structure_utils/test/cwl_unitest.sh -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test 2023-04-05T17:00:54,394 creating build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:00:54,395 copying biobb_adapters/cwl/biobb_structure_utils/test/data/2vgb.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:00:54,466 copying biobb_adapters/cwl/biobb_structure_utils/test/data/G2S_stateA_frame92.sorted.gro -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:00:54,612 copying biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.gro -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:00:54,770 copying biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:00:54,984 copying biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_WAT.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:00:55,011 copying biobb_adapters/cwl/biobb_structure_utils/test/data/cat_ligand.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:00:55,015 copying biobb_adapters/cwl/biobb_structure_utils/test/data/cat_protein.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:00:55,028 copying biobb_adapters/cwl/biobb_structure_utils/test/data/cl3.noH.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:00:55,033 copying biobb_adapters/cwl/biobb_structure_utils/test/data/extract_chain.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:00:55,097 copying biobb_adapters/cwl/biobb_structure_utils/test/data/extract_heteroatom.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:00:55,236 copying biobb_adapters/cwl/biobb_structure_utils/test/data/extract_model.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:00:55,433 copying biobb_adapters/cwl/biobb_structure_utils/test/data/extract_protein.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:00:55,449 copying biobb_adapters/cwl/biobb_structure_utils/test/data/pyruvate.gro -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:00:55,484 copying biobb_adapters/cwl/biobb_structure_utils/test/data/smallgro.gro -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:00:55,488 creating build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:00:55,490 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/cat_pdb.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:00:55,494 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_atoms.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:00:55,498 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_chain.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:00:55,503 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_heteroatoms.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:00:55,507 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_model.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:00:55,511 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_protein.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:00:55,515 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/remove_ligand.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:00:55,519 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/remove_pdb_water.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:00:55,523 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/renumber_structure.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:00:55,528 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/sort_gro_residues.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:00:55,532 creating build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:00:55,534 copying biobb_adapters/cwl/biobb_structure_utils/utils/cat_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:00:55,538 copying biobb_adapters/cwl/biobb_structure_utils/utils/extract_atoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:00:55,542 copying biobb_adapters/cwl/biobb_structure_utils/utils/extract_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:00:55,547 copying biobb_adapters/cwl/biobb_structure_utils/utils/extract_heteroatoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:00:55,551 copying biobb_adapters/cwl/biobb_structure_utils/utils/extract_model.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:00:55,555 copying biobb_adapters/cwl/biobb_structure_utils/utils/extract_protein.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:00:55,560 copying biobb_adapters/cwl/biobb_structure_utils/utils/remove_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:00:55,565 copying biobb_adapters/cwl/biobb_structure_utils/utils/remove_pdb_water.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:00:55,569 copying biobb_adapters/cwl/biobb_structure_utils/utils/renumber_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:00:55,573 copying biobb_adapters/cwl/biobb_structure_utils/utils/sort_gro_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:00:55,577 copying biobb_adapters/cwl/biobb_structure_utils/utils/str_check_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:00:55,582 copying biobb_adapters/cwl/biobb_structure_utils/utils/structure_check.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:00:55,586 creating build/lib/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:55,588 copying biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:55,593 copying biobb_adapters/cwl/biobb_vs/bindingsite.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:55,597 copying biobb_adapters/cwl/biobb_vs/box.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:55,602 copying biobb_adapters/cwl/biobb_vs/box_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:55,606 copying biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:55,610 copying biobb_adapters/cwl/biobb_vs/fpocket.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:55,614 copying biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:55,618 copying biobb_adapters/cwl/biobb_vs/fpocket_run.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:55,623 copying biobb_adapters/cwl/biobb_vs/fpocket_select.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:55,627 creating build/lib/biobb_adapters/cwl/biobb_vs/fpocket 2023-04-05T17:00:55,628 copying biobb_adapters/cwl/biobb_vs/fpocket/fpocket.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/fpocket 2023-04-05T17:00:55,633 copying biobb_adapters/cwl/biobb_vs/fpocket/fpocket_filter.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/fpocket 2023-04-05T17:00:55,637 copying biobb_adapters/cwl/biobb_vs/fpocket/fpocket_select.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/fpocket 2023-04-05T17:00:55,642 creating build/lib/biobb_adapters/cwl/biobb_vs/utils 2023-04-05T17:00:55,644 copying biobb_adapters/cwl/biobb_vs/utils/bindingsite.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/utils 2023-04-05T17:00:55,648 copying biobb_adapters/cwl/biobb_vs/utils/box.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/utils 2023-04-05T17:00:55,652 copying biobb_adapters/cwl/biobb_vs/utils/box_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/utils 2023-04-05T17:00:55,656 copying biobb_adapters/cwl/biobb_vs/utils/extract_model_pdbqt.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/utils 2023-04-05T17:00:55,661 creating build/lib/biobb_adapters/cwl/biobb_vs/vina 2023-04-05T17:00:55,663 copying biobb_adapters/cwl/biobb_vs/vina/autodock_vina.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/vina 2023-04-05T17:00:55,839 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-04-05T17:00:55,840 setuptools.SetuptoolsDeprecationWarning, 2023-04-05T17:00:55,935 installing to build/bdist.linux-armv7l/wheel 2023-04-05T17:00:55,936 running install 2023-04-05T17:00:55,997 running install_lib 2023-04-05T17:00:56,095 creating build/bdist.linux-armv7l 2023-04-05T17:00:56,096 creating build/bdist.linux-armv7l/wheel 2023-04-05T17:00:56,100 creating build/bdist.linux-armv7l/wheel/biobb_adapters 2023-04-05T17:00:56,104 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl 2023-04-05T17:00:56,108 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:56,111 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:56,115 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:56,120 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:56,124 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:56,128 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:56,133 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test 2023-04-05T17:00:56,137 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:56,140 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_image.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:56,144 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_mask.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:56,148 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_bfactor.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:56,152 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_snapshot.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:56,156 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_average.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:56,161 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rms.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:56,165 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rgyr.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:56,170 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_strip.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:56,174 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_convert.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:56,178 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rmsf.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:56,183 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_dry.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:56,187 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_slice.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2023-04-05T17:00:56,193 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data 2023-04-05T17:00:56,196 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2023-04-05T17:00:56,199 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.parm.top -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2023-04-05T17:00:56,413 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.traj.dcd -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2023-04-05T17:00:56,690 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2023-04-05T17:00:56,691 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs/energy.edr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2023-04-05T17:00:56,695 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs/trajectory.trr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2023-04-05T17:00:57,043 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs/topology.tpr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2023-04-05T17:00:57,099 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/cwl_unitest.sh -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test 2023-04-05T17:00:57,104 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:57,106 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_cluster.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:57,110 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rgyr.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:57,114 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_energy.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:57,117 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:57,121 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_trj.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:57,125 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str_ens.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:57,128 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_image.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:57,132 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rms.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2023-04-05T17:00:57,136 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:57,139 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:57,143 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:57,147 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:57,151 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:57,155 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:57,159 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:57,163 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:57,167 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:57,171 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:57,174 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:57,179 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:57,183 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:57,187 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_image.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:57,190 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2023-04-05T17:00:57,195 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:57,197 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:57,201 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:57,205 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:57,209 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:57,214 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx/pmx 2023-04-05T17:00:57,216 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmx/pmxanalyse.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx/pmx 2023-04-05T17:00:57,220 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmx/pmxgentop.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx/pmx 2023-04-05T17:00:57,224 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmx/pmxmutate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx/pmx 2023-04-05T17:00:57,227 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:57,232 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:57,236 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2023-04-05T17:00:57,241 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:57,242 copying build/lib/biobb_adapters/cwl/biobb_vs/box.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:57,246 copying build/lib/biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:57,250 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:57,255 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/utils 2023-04-05T17:00:57,256 copying build/lib/biobb_adapters/cwl/biobb_vs/utils/box.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/utils 2023-04-05T17:00:57,261 copying build/lib/biobb_adapters/cwl/biobb_vs/utils/extract_model_pdbqt.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/utils 2023-04-05T17:00:57,264 copying build/lib/biobb_adapters/cwl/biobb_vs/utils/box_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/utils 2023-04-05T17:00:57,268 copying build/lib/biobb_adapters/cwl/biobb_vs/utils/bindingsite.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/utils 2023-04-05T17:00:57,272 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_select.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:57,275 copying build/lib/biobb_adapters/cwl/biobb_vs/box_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:57,280 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/vina 2023-04-05T17:00:57,282 copying build/lib/biobb_adapters/cwl/biobb_vs/vina/autodock_vina.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/vina 2023-04-05T17:00:57,286 copying build/lib/biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:57,289 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_run.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:57,294 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/fpocket 2023-04-05T17:00:57,295 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket/fpocket.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/fpocket 2023-04-05T17:00:57,299 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket/fpocket_select.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/fpocket 2023-04-05T17:00:57,303 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket/fpocket_filter.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/fpocket 2023-04-05T17:00:57,306 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:57,310 copying build/lib/biobb_adapters/cwl/biobb_vs/bindingsite.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2023-04-05T17:00:57,315 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2023-04-05T17:00:57,316 copying build/lib/biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2023-04-05T17:00:57,320 copying build/lib/biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2023-04-05T17:00:57,324 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2023-04-05T17:00:57,328 copying build/lib/biobb_adapters/cwl/biobb_cmip/titration.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2023-04-05T17:00:57,331 copying build/lib/biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2023-04-05T17:00:57,336 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:57,338 copying build/lib/biobb_adapters/cwl/biobb_md/ndx2resttop.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:57,342 copying build/lib/biobb_adapters/cwl/biobb_md/mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:57,346 copying build/lib/biobb_adapters/cwl/biobb_md/append_ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:57,349 copying build/lib/biobb_adapters/cwl/biobb_md/genion.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:57,353 copying build/lib/biobb_adapters/cwl/biobb_md/solvate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:57,356 copying build/lib/biobb_adapters/cwl/biobb_md/grompp.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:57,360 copying build/lib/biobb_adapters/cwl/biobb_md/gmxselect.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2023-04-05T17:00:57,364 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs_extra 2023-04-05T17:00:57,366 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs_extra/ndx2resttop.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs_extra 2023-04-05T17:00:57,371 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test 2023-04-05T17:00:57,374 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs_extra 2023-04-05T17:00:57,375 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs_extra/ndx2resttop.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs_extra 2023-04-05T17:00:57,380 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data 2023-04-05T17:00:57,383 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2023-04-05T17:00:57,385 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.zip -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2023-04-05T17:00:57,862 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.ndx -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2023-04-05T17:00:58,415 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:58,416 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.zip -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:58,440 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/make_ndx.tpr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:58,770 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.zip -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:58,793 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.trr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:58,970 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.zip -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:58,994 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/pyruvate_kinase.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:59,110 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:59,288 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.trr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:59,465 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/mdrun.tpr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:59,579 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:59,760 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.zip -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:59,786 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/editconf.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:59,794 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:59,801 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.ndx -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:59,838 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.tpr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:00:59,958 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:01:00,121 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2023-04-05T17:01:00,522 copying build/lib/biobb_adapters/cwl/biobb_md/test/cwl_unitest.sh -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test 2023-04-05T17:01:00,526 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:01:00,528 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/grompp.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:01:00,532 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/genrestr.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:01:00,535 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/make_ndx.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:01:00,539 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/mdrun.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:01:00,542 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/pdb2gmx.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:01:00,545 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/solvate.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:01:00,550 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/editconf.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:01:00,553 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/genion.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2023-04-05T17:01:00,556 copying build/lib/biobb_adapters/cwl/biobb_md/make_ndx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2023-04-05T17:01:00,560 copying build/lib/biobb_adapters/cwl/biobb_md/editconf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2023-04-05T17:01:00,563 copying build/lib/biobb_adapters/cwl/biobb_md/pdb2gmx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2023-04-05T17:01:00,567 copying build/lib/biobb_adapters/cwl/biobb_md/genrestr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2023-04-05T17:01:00,570 copying build/lib/biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2023-04-05T17:01:00,575 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:01:00,577 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:01:00,581 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/genion.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:01:00,585 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/solvate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:01:00,589 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/grompp.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:01:00,592 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/make_ndx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:01:00,596 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/editconf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:01:00,599 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/pdb2gmx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:01:00,602 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/genrestr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2023-04-05T17:01:00,609 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,610 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,614 copying build/lib/biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,618 copying build/lib/biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,621 copying build/lib/biobb_adapters/cwl/biobb_ml/k_neighbors.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,626 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2023-04-05T17:01:00,628 copying build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_components.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2023-04-05T17:01:00,632 copying build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction/principal_component.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2023-04-05T17:01:00,635 copying build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2023-04-05T17:01:00,640 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:01:00,642 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/dendrogram.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:01:00,645 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/map_variables.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:01:00,649 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/pairwise_comparison.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:01:00,653 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/scale_columns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:01:00,656 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/correlation_matrix.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:01:00,659 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/dummy_variables.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:01:00,663 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/drop_columns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2023-04-05T17:01:00,666 copying build/lib/biobb_adapters/cwl/biobb_ml/pls_components.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,670 copying build/lib/biobb_adapters/cwl/biobb_ml/dendrogram.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,673 copying build/lib/biobb_adapters/cwl/biobb_ml/resampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,677 copying build/lib/biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,680 copying build/lib/biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,684 copying build/lib/biobb_adapters/cwl/biobb_ml/undersampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,689 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:01:00,690 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/support_vector_machine.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:01:00,694 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/k_neighbors.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:01:00,699 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/k_neighbors_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:01:00,702 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/random_forest_classifier.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:01:00,706 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/logistic_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:01:00,710 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/decision_tree.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:01:00,714 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/classification_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2023-04-05T17:01:00,717 copying build/lib/biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,721 copying build/lib/biobb_adapters/cwl/biobb_ml/map_variables.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,725 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,728 copying build/lib/biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,732 copying build/lib/biobb_adapters/cwl/biobb_ml/regression_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,735 copying build/lib/biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,739 copying build/lib/biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,742 copying build/lib/biobb_adapters/cwl/biobb_ml/logistic_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,746 copying build/lib/biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,750 copying build/lib/biobb_adapters/cwl/biobb_ml/scale_columns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,753 copying build/lib/biobb_adapters/cwl/biobb_ml/principal_component.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,757 copying build/lib/biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,760 copying build/lib/biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,764 copying build/lib/biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,767 copying build/lib/biobb_adapters/cwl/biobb_ml/linear_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,771 copying build/lib/biobb_adapters/cwl/biobb_ml/pls_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,775 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/regression 2023-04-05T17:01:00,777 copying build/lib/biobb_adapters/cwl/biobb_ml/regression/random_forest_regressor.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/regression 2023-04-05T17:01:00,781 copying build/lib/biobb_adapters/cwl/biobb_ml/regression/regression_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/regression 2023-04-05T17:01:00,785 copying build/lib/biobb_adapters/cwl/biobb_ml/regression/polynomial_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/regression 2023-04-05T17:01:00,789 copying build/lib/biobb_adapters/cwl/biobb_ml/regression/linear_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/regression 2023-04-05T17:01:00,792 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,797 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:01:00,799 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/clustering_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:01:00,803 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/k_means_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:01:00,806 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/agglomerative_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:01:00,810 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/spectral_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:01:00,814 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/spectral_clustering.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:01:00,818 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/agglomerative_clustering.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:01:00,821 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/k_means.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:01:00,825 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/dbscan.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2023-04-05T17:01:00,829 copying build/lib/biobb_adapters/cwl/biobb_ml/dummy_variables.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,832 copying build/lib/biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,837 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/resampling 2023-04-05T17:01:00,839 copying build/lib/biobb_adapters/cwl/biobb_ml/resampling/resampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/resampling 2023-04-05T17:01:00,842 copying build/lib/biobb_adapters/cwl/biobb_ml/resampling/undersampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/resampling 2023-04-05T17:01:00,846 copying build/lib/biobb_adapters/cwl/biobb_ml/resampling/oversampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/resampling 2023-04-05T17:01:00,850 copying build/lib/biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,854 copying build/lib/biobb_adapters/cwl/biobb_ml/drop_columns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,858 copying build/lib/biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,862 copying build/lib/biobb_adapters/cwl/biobb_ml/decision_tree.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,868 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2023-04-05T17:01:00,871 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2023-04-05T17:01:00,876 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/regression_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2023-04-05T17:01:00,880 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/classification_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2023-04-05T17:01:00,884 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/recurrent_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2023-04-05T17:01:00,889 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_decode.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2023-04-05T17:01:00,893 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/autoencoder_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2023-04-05T17:01:00,898 copying build/lib/biobb_adapters/cwl/biobb_ml/classification_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,902 copying build/lib/biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,907 copying build/lib/biobb_adapters/cwl/biobb_ml/k_means.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,911 copying build/lib/biobb_adapters/cwl/biobb_ml/oversampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,915 copying build/lib/biobb_adapters/cwl/biobb_ml/dbscan.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2023-04-05T17:01:00,921 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2023-04-05T17:01:00,925 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:01:00,927 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:01:00,932 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/canonical_fasta.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:01:00,936 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_list.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:01:00,939 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/pdb_cluster_zip.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:01:00,943 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/mmcif.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:01:00,946 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/binding_site.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:01:00,950 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/pdb_variants.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:01:00,954 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/ideal_sdf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:01:00,957 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/drugbank.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:01:00,961 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_search.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:01:00,965 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/structure_info.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:01:00,968 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:01:00,972 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2023-04-05T17:01:00,976 copying build/lib/biobb_adapters/cwl/biobb_io/pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2023-04-05T17:01:00,979 copying build/lib/biobb_adapters/cwl/biobb_io/canonical_fasta.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2023-04-05T17:01:00,983 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2023-04-05T17:01:00,987 copying build/lib/biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2023-04-05T17:01:00,992 copying build/lib/biobb_adapters/cwl/biobb_io/mmcif.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2023-04-05T17:01:00,995 copying build/lib/biobb_adapters/cwl/biobb_io/pdb_variants.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2023-04-05T17:01:00,999 copying build/lib/biobb_adapters/cwl/biobb_io/ideal_sdf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2023-04-05T17:01:01,002 copying build/lib/biobb_adapters/cwl/biobb_io/alphafold.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2023-04-05T17:01:01,005 copying build/lib/biobb_adapters/cwl/biobb_io/drugbank.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2023-04-05T17:01:01,009 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2023-04-05T17:01:01,012 copying build/lib/biobb_adapters/cwl/biobb_io/structure_info.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2023-04-05T17:01:01,016 copying build/lib/biobb_adapters/cwl/biobb_io/api_binding_site.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2023-04-05T17:01:01,020 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2023-04-05T17:01:01,023 copying build/lib/biobb_adapters/cwl/biobb_io/ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2023-04-05T17:01:01,028 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,030 copying build/lib/biobb_adapters/cwl/biobb_amber/process_minout.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,034 copying build/lib/biobb_adapters/cwl/biobb_amber/cphstats_run.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,038 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,042 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/pdb4amber 2023-04-05T17:01:01,044 copying build/lib/biobb_adapters/cwl/biobb_amber/pdb4amber/pdb4amber.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/pdb4amber 2023-04-05T17:01:01,049 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/leap 2023-04-05T17:01:01,051 copying build/lib/biobb_adapters/cwl/biobb_amber/leap/leap_build_linear_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/leap 2023-04-05T17:01:01,055 copying build/lib/biobb_adapters/cwl/biobb_amber/leap/leap_gen_top.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/leap 2023-04-05T17:01:01,059 copying build/lib/biobb_adapters/cwl/biobb_amber/leap/leap_add_ions.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/leap 2023-04-05T17:01:01,063 copying build/lib/biobb_adapters/cwl/biobb_amber/leap/leap_solvate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/leap 2023-04-05T17:01:01,068 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/parmed 2023-04-05T17:01:01,070 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed/parmed_hmassrepartition.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/parmed 2023-04-05T17:01:01,074 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed/parmed_cpinutil.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/parmed 2023-04-05T17:01:01,077 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,081 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,086 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/nap 2023-04-05T17:01:01,087 copying build/lib/biobb_adapters/cwl/biobb_amber/nap/nab_build_dna_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/nap 2023-04-05T17:01:01,092 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/process 2023-04-05T17:01:01,094 copying build/lib/biobb_adapters/cwl/biobb_amber/process/process_minout.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/process 2023-04-05T17:01:01,098 copying build/lib/biobb_adapters/cwl/biobb_amber/process/process_mdout.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/process 2023-04-05T17:01:01,103 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/cpptraj 2023-04-05T17:01:01,104 copying build/lib/biobb_adapters/cwl/biobb_amber/cpptraj/cpptraj_randomize_ions.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/cpptraj 2023-04-05T17:01:01,109 copying build/lib/biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,112 copying build/lib/biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,117 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/ambpdb 2023-04-05T17:01:01,119 copying build/lib/biobb_adapters/cwl/biobb_amber/ambpdb/amber_to_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/ambpdb 2023-04-05T17:01:01,122 copying build/lib/biobb_adapters/cwl/biobb_amber/process_mdout.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,126 copying build/lib/biobb_adapters/cwl/biobb_amber/cestats_run.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,131 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/pmemd 2023-04-05T17:01:01,133 copying build/lib/biobb_adapters/cwl/biobb_amber/pmemd/pmemd_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/pmemd 2023-04-05T17:01:01,137 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,141 copying build/lib/biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,145 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/sander 2023-04-05T17:01:01,147 copying build/lib/biobb_adapters/cwl/biobb_amber/sander/sander_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/sander 2023-04-05T17:01:01,152 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,155 copying build/lib/biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,159 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_solvate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,163 copying build/lib/biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,166 copying build/lib/biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2023-04-05T17:01:01,172 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:01:01,173 copying build/lib/biobb_adapters/cwl/biobb_gromacs/ndx2resttop.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:01:01,177 copying build/lib/biobb_adapters/cwl/biobb_gromacs/mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:01:01,181 copying build/lib/biobb_adapters/cwl/biobb_gromacs/append_ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:01:01,185 copying build/lib/biobb_adapters/cwl/biobb_gromacs/genion.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:01:01,188 copying build/lib/biobb_adapters/cwl/biobb_gromacs/solvate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:01:01,192 copying build/lib/biobb_adapters/cwl/biobb_gromacs/grompp.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:01:01,195 copying build/lib/biobb_adapters/cwl/biobb_gromacs/gmxselect.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:01:01,199 copying build/lib/biobb_adapters/cwl/biobb_gromacs/make_ndx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:01:01,202 copying build/lib/biobb_adapters/cwl/biobb_gromacs/editconf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:01:01,206 copying build/lib/biobb_adapters/cwl/biobb_gromacs/trjcat.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:01:01,209 copying build/lib/biobb_adapters/cwl/biobb_gromacs/pdb2gmx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:01:01,213 copying build/lib/biobb_adapters/cwl/biobb_gromacs/genrestr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:01:01,216 copying build/lib/biobb_adapters/cwl/biobb_gromacs/grompp_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2023-04-05T17:01:01,222 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:01:01,224 copying build/lib/biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:01:01,229 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/acpype 2023-04-05T17:01:01,230 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_ac.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/acpype 2023-04-05T17:01:01,234 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx_opls.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/acpype 2023-04-05T17:01:01,239 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_cns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/acpype 2023-04-05T17:01:01,242 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/acpype 2023-04-05T17:01:01,246 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:01:01,250 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:01:01,254 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/babelm 2023-04-05T17:01:01,256 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babelm/babel_minimize.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/babelm 2023-04-05T17:01:01,260 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babelm/babel_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/babelm 2023-04-05T17:01:01,263 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babelm/babel_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/babelm 2023-04-05T17:01:01,267 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babelm/babel_convert.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/babelm 2023-04-05T17:01:01,272 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test 2023-04-05T17:01:01,274 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/acpype 2023-04-05T17:01:01,276 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx_opls.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/acpype 2023-04-05T17:01:01,280 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_cns.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/acpype 2023-04-05T17:01:01,283 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/acpype 2023-04-05T17:01:01,287 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_ac.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/acpype 2023-04-05T17:01:01,291 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/babelm 2023-04-05T17:01:01,293 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_minimize.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/babelm 2023-04-05T17:01:01,297 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_convert.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/babelm 2023-04-05T17:01:01,300 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_remove_hydrogens.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/babelm 2023-04-05T17:01:01,304 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_add_hydrogens.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/babelm 2023-04-05T17:01:01,308 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2023-04-05T17:01:01,310 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_add_hydrogens.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2023-04-05T17:01:01,313 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_remove_hydrogens.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2023-04-05T17:01:01,318 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data 2023-04-05T17:01:01,321 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2023-04-05T17:01:01,322 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2023-04-05T17:01:01,327 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.mol2 -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2023-04-05T17:01:01,332 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2023-04-05T17:01:01,333 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.smi -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2023-04-05T17:01:01,337 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.H.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2023-04-05T17:01:01,341 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.no.H.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2023-04-05T17:01:01,345 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.minimize.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2023-04-05T17:01:01,349 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2023-04-05T17:01:01,351 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.H.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2023-04-05T17:01:01,356 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.no.H.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2023-04-05T17:01:01,359 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/cwl_unitest.sh -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test 2023-04-05T17:01:01,363 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:01:01,368 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/ambertools 2023-04-05T17:01:01,369 copying build/lib/biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/ambertools 2023-04-05T17:01:01,373 copying build/lib/biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/ambertools 2023-04-05T17:01:01,377 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:01:01,380 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:01:01,384 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:01:01,387 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:01:01,391 copying build/lib/biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:01:01,395 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2023-04-05T17:01:01,400 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:01,401 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:01,405 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:01,408 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:01,412 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:01,415 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:01,420 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:01:01,422 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/extract_protein.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:01:01,426 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/remove_ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:01:01,429 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/sort_gro_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:01:01,433 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/remove_pdb_water.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:01:01,436 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/str_check_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:01:01,440 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/extract_chain.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:01:01,444 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/extract_model.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:01:01,447 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/extract_heteroatoms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:01:01,451 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/cat_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:01:01,454 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/structure_check.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:01:01,458 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/extract_atoms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:01:01,461 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/renumber_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2023-04-05T17:01:01,465 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:01,469 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:01,472 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:01,476 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:01,479 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:01,484 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test 2023-04-05T17:01:01,487 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:01:01,489 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_chain.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:01:01,492 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_model.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:01:01,496 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_atoms.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:01:01,499 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_heteroatoms.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:01:01,503 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/sort_gro_residues.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:01:01,506 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_protein.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:01:01,510 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/remove_ligand.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:01:01,513 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/cat_pdb.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:01:01,517 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/remove_pdb_water.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:01:01,520 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/renumber_structure.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2023-04-05T17:01:01,525 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:01:01,526 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/cat_protein.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:01:01,540 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/pyruvate.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:01:01,574 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/extract_chain.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:01:01,637 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/extract_model.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:01:01,813 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/G2S_stateA_frame92.sorted.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:01:02,008 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/cat_ligand.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:01:02,011 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:01:02,229 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/2vgb.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:01:02,301 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_WAT.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:01:02,326 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/extract_heteroatom.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:01:02,469 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/cl3.noH.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:01:02,472 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/extract_protein.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:01:02,487 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/smallgro.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:01:02,490 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2023-04-05T17:01:02,674 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/cwl_unitest.sh -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test 2023-04-05T17:01:02,678 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:02,681 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:02,685 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:02,688 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:02,692 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2023-04-05T17:01:02,696 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,698 copying build/lib/biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,703 copying build/lib/biobb_adapters/cwl/biobb_dna/interhpcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,707 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_canion.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,710 copying build/lib/biobb_adapters/cwl/biobb_dna/interbpcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,715 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,719 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,722 copying build/lib/biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,726 copying build/lib/biobb_adapters/cwl/biobb_dna/puckering.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,729 copying build/lib/biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,733 copying build/lib/biobb_adapters/cwl/biobb_dna/interseqcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,737 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_averages.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,741 copying build/lib/biobb_adapters/cwl/biobb_dna/average_stiffness.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,744 copying build/lib/biobb_adapters/cwl/biobb_dna/canonicalag.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,748 copying build/lib/biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,752 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_curves.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,756 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_canal.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,759 copying build/lib/biobb_adapters/cwl/biobb_dna/bipopulations.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2023-04-05T17:01:02,764 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2023-04-05T17:01:02,767 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2023-04-05T17:01:02,769 copying build/lib/biobb_adapters/cwl/biobb_model/model/fix_backbone.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2023-04-05T17:01:02,773 copying build/lib/biobb_adapters/cwl/biobb_model/model/fix_chirality.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2023-04-05T17:01:02,776 copying build/lib/biobb_adapters/cwl/biobb_model/model/mutate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2023-04-05T17:01:02,780 copying build/lib/biobb_adapters/cwl/biobb_model/model/checking_log.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2023-04-05T17:01:02,783 copying build/lib/biobb_adapters/cwl/biobb_model/model/fix_amides.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2023-04-05T17:01:02,787 copying build/lib/biobb_adapters/cwl/biobb_model/model/fix_side_chain.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2023-04-05T17:01:02,790 copying build/lib/biobb_adapters/cwl/biobb_model/fix_altlocs.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2023-04-05T17:01:02,794 copying build/lib/biobb_adapters/cwl/biobb_model/fix_backbone.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2023-04-05T17:01:02,797 copying build/lib/biobb_adapters/cwl/biobb_model/fix_chirality.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2023-04-05T17:01:02,801 copying build/lib/biobb_adapters/cwl/biobb_model/mutate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2023-04-05T17:01:02,805 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test 2023-04-05T17:01:02,808 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/model 2023-04-05T17:01:02,809 copying build/lib/biobb_adapters/cwl/biobb_model/test/model/fix_side_chain.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/model 2023-04-05T17:01:02,813 copying build/lib/biobb_adapters/cwl/biobb_model/test/model/mutate.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/model 2023-04-05T17:01:02,818 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/data 2023-04-05T17:01:02,820 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/data/model 2023-04-05T17:01:02,822 copying build/lib/biobb_adapters/cwl/biobb_model/test/data/model/2ki5.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/data/model 2023-04-05T17:01:02,849 copying build/lib/biobb_adapters/cwl/biobb_model/test/cwl_unitest.sh -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test 2023-04-05T17:01:02,852 copying build/lib/biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2023-04-05T17:01:02,856 copying build/lib/biobb_adapters/cwl/biobb_model/checking_log.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2023-04-05T17:01:02,860 copying build/lib/biobb_adapters/cwl/biobb_model/fix_amides.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2023-04-05T17:01:02,863 copying build/lib/biobb_adapters/cwl/biobb_model/fix_side_chain.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2023-04-05T17:01:02,867 copying build/lib/biobb_adapters/cwl/biobb_model/fix_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2023-04-05T17:01:02,870 copying build/lib/biobb_adapters/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters 2023-04-05T17:01:02,875 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss 2023-04-05T17:01:02,878 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis 2023-04-05T17:01:02,881 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,883 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,887 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,890 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,894 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,897 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,901 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,904 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,908 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,911 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,915 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,918 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,922 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,925 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,928 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,932 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,935 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,939 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,942 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,946 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,950 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,953 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,957 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,960 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,963 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,966 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2023-04-05T17:01:02,970 copying build/lib/biobb_adapters/pycompss/biobb_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis 2023-04-05T17:01:02,974 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:02,976 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:02,980 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:02,983 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:02,987 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:02,990 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:02,994 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:02,998 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:03,001 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:03,004 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:03,008 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:03,011 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:03,015 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:03,018 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:03,021 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:03,024 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:03,028 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:03,031 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2023-04-05T17:01:03,036 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx 2023-04-05T17:01:03,039 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:01:03,041 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxgentop.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:01:03,044 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxmerge_ff.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:01:03,047 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/mutate_bst_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:01:03,051 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxanalyse.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:01:03,054 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/analyse_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:01:03,058 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:01:03,061 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/mutate_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:01:03,064 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxcreate_top.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:01:03,067 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/gentop_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:01:03,071 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxmutate.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:01:03,074 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxligand_hybrid.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:01:03,077 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxatom_mapping.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2023-04-05T17:01:03,081 copying build/lib/biobb_adapters/pycompss/biobb_pmx/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx 2023-04-05T17:01:03,085 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs 2023-04-05T17:01:03,087 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2023-04-05T17:01:03,089 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2023-04-05T17:01:03,093 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/box_residues.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2023-04-05T17:01:03,096 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/box.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2023-04-05T17:01:03,099 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2023-04-05T17:01:03,102 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2023-04-05T17:01:03,106 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/vina 2023-04-05T17:01:03,108 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/vina 2023-04-05T17:01:03,112 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/vina 2023-04-05T17:01:03,115 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/vina 2023-04-05T17:01:03,119 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2023-04-05T17:01:03,121 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2023-04-05T17:01:03,124 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2023-04-05T17:01:03,128 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2023-04-05T17:01:03,131 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2023-04-05T17:01:03,134 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2023-04-05T17:01:03,137 copying build/lib/biobb_adapters/pycompss/biobb_vs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs 2023-04-05T17:01:03,141 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip 2023-04-05T17:01:03,144 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2023-04-05T17:01:03,146 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2023-04-05T17:01:03,149 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2023-04-05T17:01:03,152 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2023-04-05T17:01:03,156 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2023-04-05T17:01:03,159 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2023-04-05T17:01:03,162 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/titration.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2023-04-05T17:01:03,165 copying build/lib/biobb_adapters/pycompss/biobb_cmip/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip 2023-04-05T17:01:03,169 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md 2023-04-05T17:01:03,172 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2023-04-05T17:01:03,173 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2023-04-05T17:01:03,177 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2023-04-05T17:01:03,180 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2023-04-05T17:01:03,184 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2023-04-05T17:01:03,186 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2023-04-05T17:01:03,190 copying build/lib/biobb_adapters/pycompss/biobb_md/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md 2023-04-05T17:01:03,194 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:01:03,195 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/genion.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:01:03,199 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:01:03,202 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:01:03,206 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:01:03,209 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:01:03,212 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:01:03,215 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/grompp.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:01:03,219 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:01:03,222 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/editconf.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:01:03,226 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/solvate.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:01:03,229 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2023-04-05T17:01:03,234 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml 2023-04-05T17:01:03,236 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2023-04-05T17:01:03,239 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2023-04-05T17:01:03,242 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2023-04-05T17:01:03,245 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2023-04-05T17:01:03,248 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2023-04-05T17:01:03,253 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:01:03,254 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:01:03,258 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:01:03,261 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/map_variables.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:01:03,265 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:01:03,268 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:01:03,271 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:01:03,274 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:01:03,277 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2023-04-05T17:01:03,282 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:01:03,284 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:01:03,287 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:01:03,291 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:01:03,294 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:01:03,298 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:01:03,300 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:01:03,304 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:01:03,307 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2023-04-05T17:01:03,312 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2023-04-05T17:01:03,313 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2023-04-05T17:01:03,317 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2023-04-05T17:01:03,321 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2023-04-05T17:01:03,324 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2023-04-05T17:01:03,327 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2023-04-05T17:01:03,330 copying build/lib/biobb_adapters/pycompss/biobb_ml/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml 2023-04-05T17:01:03,334 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:01:03,336 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/k_means.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:01:03,340 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:01:03,343 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:01:03,347 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:01:03,350 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:01:03,353 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:01:03,357 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:01:03,360 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:01:03,363 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2023-04-05T17:01:03,368 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2023-04-05T17:01:03,369 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/resampling.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2023-04-05T17:01:03,373 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2023-04-05T17:01:03,376 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2023-04-05T17:01:03,380 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2023-04-05T17:01:03,384 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:01:03,385 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:01:03,390 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:01:03,393 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:01:03,397 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:01:03,400 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:01:03,403 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:01:03,407 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2023-04-05T17:01:03,411 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io 2023-04-05T17:01:03,412 copying build/lib/biobb_adapters/pycompss/biobb_io/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io 2023-04-05T17:01:03,417 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,419 copying build/lib/biobb_adapters/pycompss/biobb_io/api/mmcif.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,422 copying build/lib/biobb_adapters/pycompss/biobb_io/api/api_binding_site.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,426 copying build/lib/biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,429 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,436 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,440 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,443 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,447 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,450 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_variants.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,453 copying build/lib/biobb_adapters/pycompss/biobb_io/api/alphafold.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,457 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,460 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,464 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,467 copying build/lib/biobb_adapters/pycompss/biobb_io/api/drugbank.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,471 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ligand.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,474 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ligand_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,478 copying build/lib/biobb_adapters/pycompss/biobb_io/api/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,481 copying build/lib/biobb_adapters/pycompss/biobb_io/api/structure_info.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,484 copying build/lib/biobb_adapters/pycompss/biobb_io/api/binding_site.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,487 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2023-04-05T17:01:03,492 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_commons 2023-04-05T17:01:03,494 copying build/lib/biobb_adapters/pycompss/biobb_commons/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_commons 2023-04-05T17:01:03,497 copying build/lib/biobb_adapters/pycompss/biobb_commons/task_config.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_commons 2023-04-05T17:01:03,502 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber 2023-04-05T17:01:03,504 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pdb4amber 2023-04-05T17:01:03,506 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pdb4amber 2023-04-05T17:01:03,510 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pdb4amber 2023-04-05T17:01:03,513 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pdb4amber 2023-04-05T17:01:03,517 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2023-04-05T17:01:03,519 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2023-04-05T17:01:03,523 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2023-04-05T17:01:03,526 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2023-04-05T17:01:03,529 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2023-04-05T17:01:03,532 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2023-04-05T17:01:03,537 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/parmed 2023-04-05T17:01:03,539 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/parmed 2023-04-05T17:01:03,542 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/parmed 2023-04-05T17:01:03,546 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/parmed 2023-04-05T17:01:03,549 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/nab 2023-04-05T17:01:03,551 copying build/lib/biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/nab 2023-04-05T17:01:03,555 copying build/lib/biobb_adapters/pycompss/biobb_amber/nab/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/nab 2023-04-05T17:01:03,559 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/process 2023-04-05T17:01:03,560 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/process_mdout.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/process 2023-04-05T17:01:03,564 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/process_minout.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/process 2023-04-05T17:01:03,567 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/process 2023-04-05T17:01:03,571 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cphstats 2023-04-05T17:01:03,573 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cphstats 2023-04-05T17:01:03,577 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cphstats 2023-04-05T17:01:03,579 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cphstats 2023-04-05T17:01:03,584 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cpptraj 2023-04-05T17:01:03,585 copying build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cpptraj 2023-04-05T17:01:03,589 copying build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cpptraj 2023-04-05T17:01:03,593 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/ambpdb 2023-04-05T17:01:03,595 copying build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/ambpdb 2023-04-05T17:01:03,598 copying build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/ambpdb 2023-04-05T17:01:03,602 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pmemd 2023-04-05T17:01:03,604 copying build/lib/biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pmemd 2023-04-05T17:01:03,608 copying build/lib/biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pmemd 2023-04-05T17:01:03,610 copying build/lib/biobb_adapters/pycompss/biobb_amber/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber 2023-04-05T17:01:03,614 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/sander 2023-04-05T17:01:03,616 copying build/lib/biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/sander 2023-04-05T17:01:03,619 copying build/lib/biobb_adapters/pycompss/biobb_amber/sander/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/sander 2023-04-05T17:01:03,622 copying build/lib/biobb_adapters/pycompss/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss 2023-04-05T17:01:03,626 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry 2023-04-05T17:01:03,629 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:01:03,631 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:01:03,635 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:01:03,639 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:01:03,642 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:01:03,645 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:01:03,649 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:01:03,652 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:01:03,655 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:01:03,659 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2023-04-05T17:01:03,663 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:01:03,664 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:01:03,669 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:01:03,672 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:01:03,675 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:01:03,678 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:01:03,682 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:01:03,685 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:01:03,688 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:01:03,692 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2023-04-05T17:01:03,696 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2023-04-05T17:01:03,698 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2023-04-05T17:01:03,701 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2023-04-05T17:01:03,705 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2023-04-05T17:01:03,708 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2023-04-05T17:01:03,712 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2023-04-05T17:01:03,715 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry 2023-04-05T17:01:03,718 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils 2023-04-05T17:01:03,722 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,724 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,727 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,731 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,734 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,737 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,741 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,744 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,748 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,751 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,755 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,758 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,762 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,765 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,768 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,772 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,775 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,779 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,782 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,786 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,789 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,792 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,796 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,799 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,803 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,806 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,809 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,812 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2023-04-05T17:01:03,816 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils 2023-04-05T17:01:03,819 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model 2023-04-05T17:01:03,822 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:01:03,824 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:01:03,828 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_amides.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:01:03,831 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_chirality.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:01:03,834 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_pdb.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:01:03,838 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:01:03,841 copying build/lib/biobb_adapters/pycompss/biobb_model/model/checking_log.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:01:03,844 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:01:03,848 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_backbone.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:01:03,852 copying build/lib/biobb_adapters/pycompss/biobb_model/model/mutate.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:01:03,855 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:01:03,858 copying build/lib/biobb_adapters/pycompss/biobb_model/model/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:01:03,861 copying build/lib/biobb_adapters/pycompss/biobb_model/model/mutate_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2023-04-05T17:01:03,865 copying build/lib/biobb_adapters/pycompss/biobb_model/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model 2023-04-05T17:01:03,867 running install_egg_info 2023-04-05T17:01:03,971 Copying biobb_adapters.egg-info to build/bdist.linux-armv7l/wheel/biobb_adapters-4.0.0-py3.7.egg-info 2023-04-05T17:01:03,995 running install_scripts 2023-04-05T17:01:04,027 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-04-05T17:01:04,036 creating build/bdist.linux-armv7l/wheel/biobb_adapters-4.0.0.dist-info/WHEEL 2023-04-05T17:01:04,041 creating '/tmp/pip-wheel-t4k8un2a/biobb_adapters-4.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-04-05T17:01:04,045 adding 'biobb_adapters/__init__.py' 2023-04-05T17:01:04,051 adding 'biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl' 2023-04-05T17:01:04,054 adding 'biobb_adapters/cwl/biobb_amber/cestats_run.cwl' 2023-04-05T17:01:04,058 adding 'biobb_adapters/cwl/biobb_amber/cphstats_run.cwl' 2023-04-05T17:01:04,061 adding 'biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl' 2023-04-05T17:01:04,064 adding 'biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl' 2023-04-05T17:01:04,066 adding 'biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl' 2023-04-05T17:01:04,069 adding 'biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl' 2023-04-05T17:01:04,073 adding 'biobb_adapters/cwl/biobb_amber/leap_solvate.cwl' 2023-04-05T17:01:04,075 adding 'biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl' 2023-04-05T17:01:04,078 adding 'biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl' 2023-04-05T17:01:04,081 adding 'biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl' 2023-04-05T17:01:04,084 adding 'biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl' 2023-04-05T17:01:04,087 adding 'biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl' 2023-04-05T17:01:04,090 adding 'biobb_adapters/cwl/biobb_amber/process_mdout.cwl' 2023-04-05T17:01:04,093 adding 'biobb_adapters/cwl/biobb_amber/process_minout.cwl' 2023-04-05T17:01:04,096 adding 'biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl' 2023-04-05T17:01:04,100 adding 'biobb_adapters/cwl/biobb_amber/ambpdb/amber_to_pdb.cwl' 2023-04-05T17:01:04,104 adding 'biobb_adapters/cwl/biobb_amber/cpptraj/cpptraj_randomize_ions.cwl' 2023-04-05T17:01:04,108 adding 'biobb_adapters/cwl/biobb_amber/leap/leap_add_ions.cwl' 2023-04-05T17:01:04,111 adding 'biobb_adapters/cwl/biobb_amber/leap/leap_build_linear_structure.cwl' 2023-04-05T17:01:04,114 adding 'biobb_adapters/cwl/biobb_amber/leap/leap_gen_top.cwl' 2023-04-05T17:01:04,117 adding 'biobb_adapters/cwl/biobb_amber/leap/leap_solvate.cwl' 2023-04-05T17:01:04,121 adding 'biobb_adapters/cwl/biobb_amber/nap/nab_build_dna_structure.cwl' 2023-04-05T17:01:04,124 adding 'biobb_adapters/cwl/biobb_amber/parmed/parmed_cpinutil.cwl' 2023-04-05T17:01:04,127 adding 'biobb_adapters/cwl/biobb_amber/parmed/parmed_hmassrepartition.cwl' 2023-04-05T17:01:04,131 adding 'biobb_adapters/cwl/biobb_amber/pdb4amber/pdb4amber.cwl' 2023-04-05T17:01:04,135 adding 'biobb_adapters/cwl/biobb_amber/pmemd/pmemd_mdrun.cwl' 2023-04-05T17:01:04,139 adding 'biobb_adapters/cwl/biobb_amber/process/process_mdout.cwl' 2023-04-05T17:01:04,142 adding 'biobb_adapters/cwl/biobb_amber/process/process_minout.cwl' 2023-04-05T17:01:04,146 adding 'biobb_adapters/cwl/biobb_amber/sander/sander_mdrun.cwl' 2023-04-05T17:01:04,151 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl' 2023-04-05T17:01:04,153 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl' 2023-04-05T17:01:04,156 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl' 2023-04-05T17:01:04,160 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl' 2023-04-05T17:01:04,162 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl' 2023-04-05T17:01:04,165 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl' 2023-04-05T17:01:04,168 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl' 2023-04-05T17:01:04,172 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl' 2023-04-05T17:01:04,175 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl' 2023-04-05T17:01:04,177 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl' 2023-04-05T17:01:04,181 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl' 2023-04-05T17:01:04,184 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl' 2023-04-05T17:01:04,187 adding 'biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl' 2023-04-05T17:01:04,190 adding 'biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl' 2023-04-05T17:01:04,193 adding 'biobb_adapters/cwl/biobb_analysis/gmx_image.cwl' 2023-04-05T17:01:04,196 adding 'biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl' 2023-04-05T17:01:04,199 adding 'biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl' 2023-04-05T17:01:04,201 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl' 2023-04-05T17:01:04,204 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl' 2023-04-05T17:01:04,207 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl' 2023-04-05T17:01:04,211 adding 'biobb_adapters/cwl/biobb_analysis/test/cwl_unitest.sh' 2023-04-05T17:01:04,215 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_average.yml' 2023-04-05T17:01:04,217 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_bfactor.yml' 2023-04-05T17:01:04,220 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_convert.yml' 2023-04-05T17:01:04,222 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_dry.yml' 2023-04-05T17:01:04,224 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_image.yml' 2023-04-05T17:01:04,227 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_mask.yml' 2023-04-05T17:01:04,229 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rgyr.yml' 2023-04-05T17:01:04,232 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rms.yml' 2023-04-05T17:01:04,234 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rmsf.yml' 2023-04-05T17:01:04,236 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_slice.yml' 2023-04-05T17:01:04,239 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_snapshot.yml' 2023-04-05T17:01:04,241 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_strip.yml' 2023-04-05T17:01:05,492 adding 'biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.parm.top' 2023-04-05T17:01:09,660 adding 'biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.traj.dcd' 2023-04-05T17:01:09,799 adding 'biobb_adapters/cwl/biobb_analysis/test/data/gromacs/energy.edr' 2023-04-05T17:01:10,182 adding 'biobb_adapters/cwl/biobb_analysis/test/data/gromacs/topology.tpr' 2023-04-05T17:01:13,264 adding 'biobb_adapters/cwl/biobb_analysis/test/data/gromacs/trajectory.trr' 2023-04-05T17:01:13,425 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_cluster.yml' 2023-04-05T17:01:13,427 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_energy.yml' 2023-04-05T17:01:13,430 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_image.yml' 2023-04-05T17:01:13,432 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rgyr.yml' 2023-04-05T17:01:13,434 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rms.yml' 2023-04-05T17:01:13,437 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str.yml' 2023-04-05T17:01:13,439 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str_ens.yml' 2023-04-05T17:01:13,442 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_trj.yml' 2023-04-05T17:01:13,446 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl' 2023-04-05T17:01:13,449 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl' 2023-04-05T17:01:13,452 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl' 2023-04-05T17:01:13,455 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl' 2023-04-05T17:01:13,458 adding 'biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl' 2023-04-05T17:01:13,461 adding 'biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl' 2023-04-05T17:01:13,464 adding 'biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl' 2023-04-05T17:01:13,467 adding 'biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl' 2023-04-05T17:01:13,470 adding 'biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl' 2023-04-05T17:01:13,473 adding 'biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl' 2023-04-05T17:01:13,477 adding 'biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_ac.cwl' 2023-04-05T17:01:13,480 adding 'biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_cns.cwl' 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'biobb_adapters/cwl/biobb_ml/oversampling.cwl' 2023-04-05T17:01:44,277 adding 'biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl' 2023-04-05T17:01:44,280 adding 'biobb_adapters/cwl/biobb_ml/pls_components.cwl' 2023-04-05T17:01:44,283 adding 'biobb_adapters/cwl/biobb_ml/pls_regression.cwl' 2023-04-05T17:01:44,286 adding 'biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl' 2023-04-05T17:01:44,289 adding 'biobb_adapters/cwl/biobb_ml/principal_component.cwl' 2023-04-05T17:01:44,292 adding 'biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl' 2023-04-05T17:01:44,295 adding 'biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl' 2023-04-05T17:01:44,298 adding 'biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl' 2023-04-05T17:01:44,301 adding 'biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl' 2023-04-05T17:01:44,303 adding 'biobb_adapters/cwl/biobb_ml/regression_predict.cwl' 2023-04-05T17:01:44,306 adding 'biobb_adapters/cwl/biobb_ml/resampling.cwl' 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'biobb_adapters/cwl/biobb_ml/classification/random_forest_classifier.cwl' 2023-04-05T17:01:44,343 adding 'biobb_adapters/cwl/biobb_ml/classification/support_vector_machine.cwl' 2023-04-05T17:01:44,347 adding 'biobb_adapters/cwl/biobb_ml/clustering/agglomerative_clustering.cwl' 2023-04-05T17:01:44,350 adding 'biobb_adapters/cwl/biobb_ml/clustering/agglomerative_coefficient.cwl' 2023-04-05T17:01:44,353 adding 'biobb_adapters/cwl/biobb_ml/clustering/clustering_predict.cwl' 2023-04-05T17:01:44,356 adding 'biobb_adapters/cwl/biobb_ml/clustering/dbscan.cwl' 2023-04-05T17:01:44,359 adding 'biobb_adapters/cwl/biobb_ml/clustering/k_means.cwl' 2023-04-05T17:01:44,362 adding 'biobb_adapters/cwl/biobb_ml/clustering/k_means_coefficient.cwl' 2023-04-05T17:01:44,364 adding 'biobb_adapters/cwl/biobb_ml/clustering/spectral_clustering.cwl' 2023-04-05T17:01:44,367 adding 'biobb_adapters/cwl/biobb_ml/clustering/spectral_coefficient.cwl' 2023-04-05T17:01:44,371 adding 'biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_components.cwl' 2023-04-05T17:01:44,374 adding 'biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_regression.cwl' 2023-04-05T17:01:44,377 adding 'biobb_adapters/cwl/biobb_ml/dimensionality_reduction/principal_component.cwl' 2023-04-05T17:01:44,381 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/autoencoder_neural_network.cwl' 2023-04-05T17:01:44,384 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/classification_neural_network.cwl' 2023-04-05T17:01:44,387 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_decode.cwl' 2023-04-05T17:01:44,390 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_predict.cwl' 2023-04-05T17:01:44,393 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/recurrent_neural_network.cwl' 2023-04-05T17:01:44,396 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/regression_neural_network.cwl' 2023-04-05T17:01:44,400 adding 'biobb_adapters/cwl/biobb_ml/regression/linear_regression.cwl' 2023-04-05T17:01:44,402 adding 'biobb_adapters/cwl/biobb_ml/regression/polynomial_regression.cwl' 2023-04-05T17:01:44,405 adding 'biobb_adapters/cwl/biobb_ml/regression/random_forest_regressor.cwl' 2023-04-05T17:01:44,408 adding 'biobb_adapters/cwl/biobb_ml/regression/regression_predict.cwl' 2023-04-05T17:01:44,412 adding 'biobb_adapters/cwl/biobb_ml/resampling/oversampling.cwl' 2023-04-05T17:01:44,415 adding 'biobb_adapters/cwl/biobb_ml/resampling/resampling.cwl' 2023-04-05T17:01:44,418 adding 'biobb_adapters/cwl/biobb_ml/resampling/undersampling.cwl' 2023-04-05T17:01:44,422 adding 'biobb_adapters/cwl/biobb_ml/utils/correlation_matrix.cwl' 2023-04-05T17:01:44,425 adding 'biobb_adapters/cwl/biobb_ml/utils/dendrogram.cwl' 2023-04-05T17:01:44,427 adding 'biobb_adapters/cwl/biobb_ml/utils/drop_columns.cwl' 2023-04-05T17:01:44,430 adding 'biobb_adapters/cwl/biobb_ml/utils/dummy_variables.cwl' 2023-04-05T17:01:44,433 adding 'biobb_adapters/cwl/biobb_ml/utils/map_variables.cwl' 2023-04-05T17:01:44,436 adding 'biobb_adapters/cwl/biobb_ml/utils/pairwise_comparison.cwl' 2023-04-05T17:01:44,439 adding 'biobb_adapters/cwl/biobb_ml/utils/scale_columns.cwl' 2023-04-05T17:01:44,443 adding 'biobb_adapters/cwl/biobb_model/checking_log.cwl' 2023-04-05T17:01:44,446 adding 'biobb_adapters/cwl/biobb_model/fix_altlocs.cwl' 2023-04-05T17:01:44,448 adding 'biobb_adapters/cwl/biobb_model/fix_amides.cwl' 2023-04-05T17:01:44,451 adding 'biobb_adapters/cwl/biobb_model/fix_backbone.cwl' 2023-04-05T17:01:44,454 adding 'biobb_adapters/cwl/biobb_model/fix_chirality.cwl' 2023-04-05T17:01:44,456 adding 'biobb_adapters/cwl/biobb_model/fix_pdb.cwl' 2023-04-05T17:01:44,459 adding 'biobb_adapters/cwl/biobb_model/fix_side_chain.cwl' 2023-04-05T17:01:44,462 adding 'biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl' 2023-04-05T17:01:44,465 adding 'biobb_adapters/cwl/biobb_model/mutate.cwl' 2023-04-05T17:01:44,469 adding 'biobb_adapters/cwl/biobb_model/model/checking_log.cwl' 2023-04-05T17:01:44,472 adding 'biobb_adapters/cwl/biobb_model/model/fix_amides.cwl' 2023-04-05T17:01:44,474 adding 'biobb_adapters/cwl/biobb_model/model/fix_backbone.cwl' 2023-04-05T17:01:44,477 adding 'biobb_adapters/cwl/biobb_model/model/fix_chirality.cwl' 2023-04-05T17:01:44,480 adding 'biobb_adapters/cwl/biobb_model/model/fix_side_chain.cwl' 2023-04-05T17:01:44,482 adding 'biobb_adapters/cwl/biobb_model/model/mutate.cwl' 2023-04-05T17:01:44,486 adding 'biobb_adapters/cwl/biobb_model/test/cwl_unitest.sh' 2023-04-05T17:01:44,679 adding 'biobb_adapters/cwl/biobb_model/test/data/model/2ki5.pdb' 2023-04-05T17:01:44,692 adding 'biobb_adapters/cwl/biobb_model/test/model/fix_side_chain.yml' 2023-04-05T17:01:44,694 adding 'biobb_adapters/cwl/biobb_model/test/model/mutate.yml' 2023-04-05T17:01:44,699 adding 'biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl' 2023-04-05T17:01:44,702 adding 'biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl' 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'biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl' 2023-04-05T17:01:44,773 adding 'biobb_adapters/cwl/biobb_structure_utils/test/cwl_unitest.sh' 2023-04-05T17:01:45,377 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/2vgb.pdb' 2023-04-05T17:01:46,926 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/G2S_stateA_frame92.sorted.gro' 2023-04-05T17:01:49,861 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.gro' 2023-04-05T17:01:51,351 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.pdb' 2023-04-05T17:01:51,577 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_WAT.pdb' 2023-04-05T17:01:51,588 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/cat_ligand.pdb' 2023-04-05T17:01:51,663 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/cat_protein.pdb' 2023-04-05T17:01:51,670 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/cl3.noH.pdb' 2023-04-05T17:01:52,206 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/extract_chain.pdb' 2023-04-05T17:01:53,732 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/extract_heteroatom.pdb' 2023-04-05T17:01:55,312 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/extract_model.pdb' 2023-04-05T17:01:55,475 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/extract_protein.pdb' 2023-04-05T17:01:55,845 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/pyruvate.gro' 2023-04-05T17:01:55,861 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/smallgro.gro' 2023-04-05T17:01:55,865 adding 'biobb_adapters/cwl/biobb_structure_utils/test/utils/cat_pdb.yml' 2023-04-05T17:01:55,868 adding 'biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_atoms.yml' 2023-04-05T17:01:55,870 adding 'biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_chain.yml' 2023-04-05T17:01:55,872 adding 'biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_heteroatoms.yml' 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'biobb_adapters/cwl/biobb_structure_utils/utils/extract_heteroatoms.cwl' 2023-04-05T17:01:55,902 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/extract_model.cwl' 2023-04-05T17:01:55,904 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/extract_protein.cwl' 2023-04-05T17:01:55,907 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/remove_ligand.cwl' 2023-04-05T17:01:55,910 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/remove_pdb_water.cwl' 2023-04-05T17:01:55,913 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/renumber_structure.cwl' 2023-04-05T17:01:55,915 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/sort_gro_residues.cwl' 2023-04-05T17:01:55,918 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/str_check_add_hydrogens.cwl' 2023-04-05T17:01:55,921 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/structure_check.cwl' 2023-04-05T17:01:55,926 adding 'biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl' 2023-04-05T17:01:55,929 adding 'biobb_adapters/cwl/biobb_vs/bindingsite.cwl' 2023-04-05T17:01:55,931 adding 'biobb_adapters/cwl/biobb_vs/box.cwl' 2023-04-05T17:01:55,934 adding 'biobb_adapters/cwl/biobb_vs/box_residues.cwl' 2023-04-05T17:01:55,937 adding 'biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl' 2023-04-05T17:01:55,940 adding 'biobb_adapters/cwl/biobb_vs/fpocket.cwl' 2023-04-05T17:01:55,943 adding 'biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl' 2023-04-05T17:01:55,946 adding 'biobb_adapters/cwl/biobb_vs/fpocket_run.cwl' 2023-04-05T17:01:55,949 adding 'biobb_adapters/cwl/biobb_vs/fpocket_select.cwl' 2023-04-05T17:01:55,953 adding 'biobb_adapters/cwl/biobb_vs/fpocket/fpocket.cwl' 2023-04-05T17:01:55,955 adding 'biobb_adapters/cwl/biobb_vs/fpocket/fpocket_filter.cwl' 2023-04-05T17:01:55,958 adding 'biobb_adapters/cwl/biobb_vs/fpocket/fpocket_select.cwl' 2023-04-05T17:01:55,962 adding 'biobb_adapters/cwl/biobb_vs/utils/bindingsite.cwl' 2023-04-05T17:01:55,965 adding 'biobb_adapters/cwl/biobb_vs/utils/box.cwl' 2023-04-05T17:01:55,968 adding 'biobb_adapters/cwl/biobb_vs/utils/box_residues.cwl' 2023-04-05T17:01:55,971 adding 'biobb_adapters/cwl/biobb_vs/utils/extract_model_pdbqt.cwl' 2023-04-05T17:01:55,975 adding 'biobb_adapters/cwl/biobb_vs/vina/autodock_vina.cwl' 2023-04-05T17:01:55,979 adding 'biobb_adapters/pycompss/__init__.py' 2023-04-05T17:01:55,983 adding 'biobb_adapters/pycompss/biobb_amber/__init__.py' 2023-04-05T17:01:55,986 adding 'biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py' 2023-04-05T17:01:55,989 adding 'biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py' 2023-04-05T17:01:55,992 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py' 2023-04-05T17:01:55,995 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py' 2023-04-05T17:01:55,998 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py' 2023-04-05T17:01:56,001 adding 'biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py' 2023-04-05T17:01:56,004 adding 'biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py' 2023-04-05T17:01:56,007 adding 'biobb_adapters/pycompss/biobb_amber/leap/__init__.py' 2023-04-05T17:01:56,010 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py' 2023-04-05T17:01:56,013 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py' 2023-04-05T17:01:56,016 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py' 2023-04-05T17:01:56,018 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py' 2023-04-05T17:01:56,022 adding 'biobb_adapters/pycompss/biobb_amber/nab/__init__.py' 2023-04-05T17:01:56,024 adding 'biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py' 2023-04-05T17:01:56,028 adding 'biobb_adapters/pycompss/biobb_amber/parmed/__init__.py' 2023-04-05T17:01:56,031 adding 'biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py' 2023-04-05T17:01:56,033 adding 'biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py' 2023-04-05T17:01:56,037 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py' 2023-04-05T17:01:56,040 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py' 2023-04-05T17:01:56,042 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py' 2023-04-05T17:01:56,046 adding 'biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py' 2023-04-05T17:01:56,048 adding 'biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py' 2023-04-05T17:01:56,052 adding 'biobb_adapters/pycompss/biobb_amber/process/__init__.py' 2023-04-05T17:01:56,054 adding 'biobb_adapters/pycompss/biobb_amber/process/process_mdout.py' 2023-04-05T17:01:56,057 adding 'biobb_adapters/pycompss/biobb_amber/process/process_minout.py' 2023-04-05T17:01:56,060 adding 'biobb_adapters/pycompss/biobb_amber/sander/__init__.py' 2023-04-05T17:01:56,063 adding 'biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py' 2023-04-05T17:01:56,067 adding 'biobb_adapters/pycompss/biobb_analysis/__init__.py' 2023-04-05T17:01:56,071 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py' 2023-04-05T17:01:56,074 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py' 2023-04-05T17:01:56,077 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py' 2023-04-05T17:01:56,079 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py' 2023-04-05T17:01:56,082 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py' 2023-04-05T17:01:56,085 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py' 2023-04-05T17:01:56,087 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py' 2023-04-05T17:01:56,090 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py' 2023-04-05T17:01:56,093 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py' 2023-04-05T17:01:56,095 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py' 2023-04-05T17:01:56,098 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py' 2023-04-05T17:01:56,101 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py' 2023-04-05T17:01:56,103 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py' 2023-04-05T17:01:56,106 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py' 2023-04-05T17:01:56,109 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py' 2023-04-05T17:01:56,111 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py' 2023-04-05T17:01:56,114 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py' 2023-04-05T17:01:56,117 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py' 2023-04-05T17:01:56,119 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py' 2023-04-05T17:01:56,122 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py' 2023-04-05T17:01:56,124 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py' 2023-04-05T17:01:56,127 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py' 2023-04-05T17:01:56,129 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py' 2023-04-05T17:01:56,132 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py' 2023-04-05T17:01:56,134 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py' 2023-04-05T17:01:56,138 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py' 2023-04-05T17:01:56,141 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py' 2023-04-05T17:01:56,143 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py' 2023-04-05T17:01:56,146 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py' 2023-04-05T17:01:56,149 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py' 2023-04-05T17:01:56,151 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py' 2023-04-05T17:01:56,154 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py' 2023-04-05T17:01:56,157 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py' 2023-04-05T17:01:56,159 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py' 2023-04-05T17:01:56,162 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py' 2023-04-05T17:01:56,164 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py' 2023-04-05T17:01:56,167 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py' 2023-04-05T17:01:56,170 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py' 2023-04-05T17:01:56,172 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py' 2023-04-05T17:01:56,175 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py' 2023-04-05T17:01:56,177 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py' 2023-04-05T17:01:56,180 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py' 2023-04-05T17:01:56,183 adding 'biobb_adapters/pycompss/biobb_chemistry/__init__.py' 2023-04-05T17:01:56,187 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py' 2023-04-05T17:01:56,190 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py' 2023-04-05T17:01:56,192 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py' 2023-04-05T17:01:56,195 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py' 2023-04-05T17:01:56,198 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py' 2023-04-05T17:01:56,200 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py' 2023-04-05T17:01:56,203 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py' 2023-04-05T17:01:56,206 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py' 2023-04-05T17:01:56,208 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py' 2023-04-05T17:01:56,212 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py' 2023-04-05T17:01:56,215 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py' 2023-04-05T17:01:56,217 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py' 2023-04-05T17:01:56,220 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py' 2023-04-05T17:01:56,222 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py' 2023-04-05T17:01:56,226 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py' 2023-04-05T17:01:56,228 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py' 2023-04-05T17:01:56,231 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py' 2023-04-05T17:01:56,233 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py' 2023-04-05T17:01:56,236 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py' 2023-04-05T17:01:56,239 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py' 2023-04-05T17:01:56,241 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py' 2023-04-05T17:01:56,244 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py' 2023-04-05T17:01:56,246 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py' 2023-04-05T17:01:56,249 adding 'biobb_adapters/pycompss/biobb_cmip/__init__.py' 2023-04-05T17:01:56,253 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py' 2023-04-05T17:01:56,255 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py' 2023-04-05T17:01:56,258 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py' 2023-04-05T17:01:56,261 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py' 2023-04-05T17:01:56,263 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py' 2023-04-05T17:01:56,266 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/titration.py' 2023-04-05T17:01:56,269 adding 'biobb_adapters/pycompss/biobb_commons/__init__.py' 2023-04-05T17:01:56,272 adding 'biobb_adapters/pycompss/biobb_commons/task_config.py' 2023-04-05T17:01:56,275 adding 'biobb_adapters/pycompss/biobb_io/__init__.py' 2023-04-05T17:01:56,279 adding 'biobb_adapters/pycompss/biobb_io/api/__init__.py' 2023-04-05T17:01:56,281 adding 'biobb_adapters/pycompss/biobb_io/api/alphafold.py' 2023-04-05T17:01:56,284 adding 'biobb_adapters/pycompss/biobb_io/api/api_binding_site.py' 2023-04-05T17:01:56,287 adding 'biobb_adapters/pycompss/biobb_io/api/binding_site.py' 2023-04-05T17:01:56,290 adding 'biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py' 2023-04-05T17:01:56,292 adding 'biobb_adapters/pycompss/biobb_io/api/drugbank.py' 2023-04-05T17:01:56,295 adding 'biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py' 2023-04-05T17:01:56,297 adding 'biobb_adapters/pycompss/biobb_io/api/ligand.py' 2023-04-05T17:01:56,300 adding 'biobb_adapters/pycompss/biobb_io/api/ligand_pc.py' 2023-04-05T17:01:56,302 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py' 2023-04-05T17:01:56,305 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py' 2023-04-05T17:01:56,307 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py' 2023-04-05T17:01:56,310 adding 'biobb_adapters/pycompss/biobb_io/api/mmcif.py' 2023-04-05T17:01:56,313 adding 'biobb_adapters/pycompss/biobb_io/api/pdb.py' 2023-04-05T17:01:56,315 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py' 2023-04-05T17:01:56,318 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py' 2023-04-05T17:01:56,320 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_pc.py' 2023-04-05T17:01:56,323 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_variants.py' 2023-04-05T17:01:56,325 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py' 2023-04-05T17:01:56,328 adding 'biobb_adapters/pycompss/biobb_io/api/structure_info.py' 2023-04-05T17:01:56,332 adding 'biobb_adapters/pycompss/biobb_md/__init__.py' 2023-04-05T17:01:56,335 adding 'biobb_adapters/pycompss/biobb_md/gromacs/__init__.py' 2023-04-05T17:01:56,338 adding 'biobb_adapters/pycompss/biobb_md/gromacs/editconf.py' 2023-04-05T17:01:56,341 adding 'biobb_adapters/pycompss/biobb_md/gromacs/genion.py' 2023-04-05T17:01:56,343 adding 'biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py' 2023-04-05T17:01:56,346 adding 'biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py' 2023-04-05T17:01:56,349 adding 'biobb_adapters/pycompss/biobb_md/gromacs/grompp.py' 2023-04-05T17:01:56,351 adding 'biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py' 2023-04-05T17:01:56,354 adding 'biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py' 2023-04-05T17:01:56,357 adding 'biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py' 2023-04-05T17:01:56,359 adding 'biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py' 2023-04-05T17:01:56,362 adding 'biobb_adapters/pycompss/biobb_md/gromacs/solvate.py' 2023-04-05T17:01:56,365 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py' 2023-04-05T17:01:56,368 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py' 2023-04-05T17:01:56,370 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py' 2023-04-05T17:01:56,373 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py' 2023-04-05T17:01:56,375 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py' 2023-04-05T17:01:56,379 adding 'biobb_adapters/pycompss/biobb_ml/__init__.py' 2023-04-05T17:01:56,382 adding 'biobb_adapters/pycompss/biobb_ml/classification/__init__.py' 2023-04-05T17:01:56,385 adding 'biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py' 2023-04-05T17:01:56,388 adding 'biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py' 2023-04-05T17:01:56,391 adding 'biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py' 2023-04-05T17:01:56,393 adding 'biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py' 2023-04-05T17:01:56,396 adding 'biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py' 2023-04-05T17:01:56,398 adding 'biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py' 2023-04-05T17:01:56,401 adding 'biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py' 2023-04-05T17:01:56,405 adding 'biobb_adapters/pycompss/biobb_ml/clustering/__init__.py' 2023-04-05T17:01:56,407 adding 'biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py' 2023-04-05T17:01:56,410 adding 'biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py' 2023-04-05T17:01:56,413 adding 'biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py' 2023-04-05T17:01:56,415 adding 'biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py' 2023-04-05T17:01:56,418 adding 'biobb_adapters/pycompss/biobb_ml/clustering/k_means.py' 2023-04-05T17:01:56,420 adding 'biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py' 2023-04-05T17:01:56,423 adding 'biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py' 2023-04-05T17:01:56,426 adding 'biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py' 2023-04-05T17:01:56,429 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py' 2023-04-05T17:01:56,432 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py' 2023-04-05T17:01:56,434 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py' 2023-04-05T17:01:56,437 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py' 2023-04-05T17:01:56,440 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py' 2023-04-05T17:01:56,443 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py' 2023-04-05T17:01:56,446 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py' 2023-04-05T17:01:56,448 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py' 2023-04-05T17:01:56,451 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py' 2023-04-05T17:01:56,453 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py' 2023-04-05T17:01:56,456 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py' 2023-04-05T17:01:56,459 adding 'biobb_adapters/pycompss/biobb_ml/regression/__init__.py' 2023-04-05T17:01:56,462 adding 'biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py' 2023-04-05T17:01:56,465 adding 'biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py' 2023-04-05T17:01:56,467 adding 'biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py' 2023-04-05T17:01:56,470 adding 'biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py' 2023-04-05T17:01:56,474 adding 'biobb_adapters/pycompss/biobb_ml/resampling/__init__.py' 2023-04-05T17:01:56,476 adding 'biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py' 2023-04-05T17:01:56,479 adding 'biobb_adapters/pycompss/biobb_ml/resampling/resampling.py' 2023-04-05T17:01:56,481 adding 'biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py' 2023-04-05T17:01:56,485 adding 'biobb_adapters/pycompss/biobb_ml/utils/__init__.py' 2023-04-05T17:01:56,487 adding 'biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py' 2023-04-05T17:01:56,490 adding 'biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py' 2023-04-05T17:01:56,493 adding 'biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py' 2023-04-05T17:01:56,495 adding 'biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py' 2023-04-05T17:01:56,498 adding 'biobb_adapters/pycompss/biobb_ml/utils/map_variables.py' 2023-04-05T17:01:56,500 adding 'biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py' 2023-04-05T17:01:56,503 adding 'biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py' 2023-04-05T17:01:56,506 adding 'biobb_adapters/pycompss/biobb_model/__init__.py' 2023-04-05T17:01:56,510 adding 'biobb_adapters/pycompss/biobb_model/model/__init__.py' 2023-04-05T17:01:56,512 adding 'biobb_adapters/pycompss/biobb_model/model/checking_log.py' 2023-04-05T17:01:56,515 adding 'biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py' 2023-04-05T17:01:56,518 adding 'biobb_adapters/pycompss/biobb_model/model/fix_amides.py' 2023-04-05T17:01:56,520 adding 'biobb_adapters/pycompss/biobb_model/model/fix_backbone.py' 2023-04-05T17:01:56,523 adding 'biobb_adapters/pycompss/biobb_model/model/fix_chirality.py' 2023-04-05T17:01:56,525 adding 'biobb_adapters/pycompss/biobb_model/model/fix_pdb.py' 2023-04-05T17:01:56,528 adding 'biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py' 2023-04-05T17:01:56,530 adding 'biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py' 2023-04-05T17:01:56,533 adding 'biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py' 2023-04-05T17:01:56,536 adding 'biobb_adapters/pycompss/biobb_model/model/mutate.py' 2023-04-05T17:01:56,538 adding 'biobb_adapters/pycompss/biobb_model/model/mutate_pc.py' 2023-04-05T17:01:56,542 adding 'biobb_adapters/pycompss/biobb_pmx/__init__.py' 2023-04-05T17:01:56,545 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/__init__.py' 2023-04-05T17:01:56,548 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/analyse_pc.py' 2023-04-05T17:01:56,550 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/gentop_pc.py' 2023-04-05T17:01:56,553 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/mutate_bst_pc.py' 2023-04-05T17:01:56,555 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/mutate_pc.py' 2023-04-05T17:01:56,558 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxanalyse.py' 2023-04-05T17:01:56,561 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxatom_mapping.py' 2023-04-05T17:01:56,563 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxcreate_top.py' 2023-04-05T17:01:56,566 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxgentop.py' 2023-04-05T17:01:56,569 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxligand_hybrid.py' 2023-04-05T17:01:56,572 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxmerge_ff.py' 2023-04-05T17:01:56,575 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxmutate.py' 2023-04-05T17:01:56,578 adding 'biobb_adapters/pycompss/biobb_structure_utils/__init__.py' 2023-04-05T17:01:56,582 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py' 2023-04-05T17:01:56,585 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py' 2023-04-05T17:01:56,587 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py' 2023-04-05T17:01:56,590 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py' 2023-04-05T17:01:56,593 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py' 2023-04-05T17:01:56,595 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py' 2023-04-05T17:01:56,598 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py' 2023-04-05T17:01:56,600 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py' 2023-04-05T17:01:56,603 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py' 2023-04-05T17:01:56,605 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py' 2023-04-05T17:01:56,608 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py' 2023-04-05T17:01:56,610 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py' 2023-04-05T17:01:56,613 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py' 2023-04-05T17:01:56,615 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py' 2023-04-05T17:01:56,618 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py' 2023-04-05T17:01:56,621 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py' 2023-04-05T17:01:56,623 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py' 2023-04-05T17:01:56,626 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py' 2023-04-05T17:01:56,628 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py' 2023-04-05T17:01:56,631 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py' 2023-04-05T17:01:56,634 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py' 2023-04-05T17:01:56,636 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py' 2023-04-05T17:01:56,639 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py' 2023-04-05T17:01:56,641 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py' 2023-04-05T17:01:56,644 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py' 2023-04-05T17:01:56,646 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py' 2023-04-05T17:01:56,649 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py' 2023-04-05T17:01:56,652 adding 'biobb_adapters/pycompss/biobb_vs/__init__.py' 2023-04-05T17:01:56,656 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py' 2023-04-05T17:01:56,658 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py' 2023-04-05T17:01:56,661 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py' 2023-04-05T17:01:56,663 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py' 2023-04-05T17:01:56,666 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py' 2023-04-05T17:01:56,669 adding 'biobb_adapters/pycompss/biobb_vs/utils/__init__.py' 2023-04-05T17:01:56,672 adding 'biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py' 2023-04-05T17:01:56,675 adding 'biobb_adapters/pycompss/biobb_vs/utils/box.py' 2023-04-05T17:01:56,677 adding 'biobb_adapters/pycompss/biobb_vs/utils/box_residues.py' 2023-04-05T17:01:56,680 adding 'biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py' 2023-04-05T17:01:56,683 adding 'biobb_adapters/pycompss/biobb_vs/vina/__init__.py' 2023-04-05T17:01:56,685 adding 'biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py' 2023-04-05T17:01:56,688 adding 'biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py' 2023-04-05T17:01:56,695 adding 'biobb_adapters-4.0.0.dist-info/LICENSE' 2023-04-05T17:01:56,698 adding 'biobb_adapters-4.0.0.dist-info/METADATA' 2023-04-05T17:01:56,700 adding 'biobb_adapters-4.0.0.dist-info/WHEEL' 2023-04-05T17:01:56,702 adding 'biobb_adapters-4.0.0.dist-info/top_level.txt' 2023-04-05T17:01:56,722 adding 'biobb_adapters-4.0.0.dist-info/RECORD' 2023-04-05T17:01:57,128 removing build/bdist.linux-armv7l/wheel 2023-04-05T17:01:57,742 Building wheel for biobb-adapters (setup.py): finished with status 'done' 2023-04-05T17:02:00,068 Created wheel for biobb-adapters: filename=biobb_adapters-4.0.0-py3-none-any.whl size=40213437 sha256=cb9dd142294b4d6a6c6a16e59ad3af487d4f7907e1e521d4ee451a71dbb75811 2023-04-05T17:02:00,070 Stored in directory: /tmp/pip-ephem-wheel-cache-973tkrxv/wheels/9b/3d/e2/40b3f43130092e364838d4abc1f193f7d4830c66dedf66681c 2023-04-05T17:02:00,195 Successfully built biobb-adapters 2023-04-05T17:02:02,925 Removed build tracker: '/tmp/pip-build-tracker-bw898jdb'