2023-04-10T06:27:37,095 Created temporary directory: /tmp/pip-ephem-wheel-cache-mszkib9o 2023-04-10T06:27:37,098 Created temporary directory: /tmp/pip-build-tracker-_sn90u7n 2023-04-10T06:27:37,098 Initialized build tracking at /tmp/pip-build-tracker-_sn90u7n 2023-04-10T06:27:37,098 Created build tracker: /tmp/pip-build-tracker-_sn90u7n 2023-04-10T06:27:37,099 Entered build tracker: /tmp/pip-build-tracker-_sn90u7n 2023-04-10T06:27:37,099 Created temporary directory: /tmp/pip-wheel-rc5lty05 2023-04-10T06:27:37,103 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-04-10T06:27:37,106 Created temporary directory: /tmp/pip-ephem-wheel-cache-gjuxj94z 2023-04-10T06:27:37,136 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-04-10T06:27:37,139 2 location(s) to search for versions of pysam: 2023-04-10T06:27:37,139 * https://pypi.org/simple/pysam/ 2023-04-10T06:27:37,139 * https://www.piwheels.org/simple/pysam/ 2023-04-10T06:27:37,140 Fetching project page and analyzing links: https://pypi.org/simple/pysam/ 2023-04-10T06:27:37,140 Getting page https://pypi.org/simple/pysam/ 2023-04-10T06:27:37,142 Found index url https://pypi.org/simple 2023-04-10T06:27:37,201 Fetched page https://pypi.org/simple/pysam/ as application/vnd.pypi.simple.v1+json 2023-04-10T06:27:37,265 Found link https://files.pythonhosted.org/packages/7f/ce/e9405fcf72096f78dc7d75e8ce2a1cd907e1b4a9af0dbf1fc4dac5770f81/pysam-0.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.4 2023-04-10T06:27:37,266 Found link https://files.pythonhosted.org/packages/df/58/508dc40f603551d34b815560d52d9532dd243f1a8c35d9317ebff15d27e7/pysam-0.4.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.4.1 2023-04-10T06:27:37,267 Found link https://files.pythonhosted.org/packages/64/7b/09ff2b61c7600a5aefd7ee0c37cec60140d31f8194d237e1d63c4d457931/pysam-0.7.6.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.6 2023-04-10T06:27:37,267 Found link https://files.pythonhosted.org/packages/46/b5/877f40fbb84f588b69b4afcb1409b8bdeed7ef980113d3e8ef69bab26e09/pysam-0.7.7.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.7 2023-04-10T06:27:37,267 Found link https://files.pythonhosted.org/packages/b5/0f/436d15f08096dd9869a956e502fd119c15efbd84896aa53df50c7c6c0e13/pysam-0.7.8.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.8 2023-04-10T06:27:37,268 Found link https://files.pythonhosted.org/packages/a4/ea/901d47d5621f15c05079dcf45e746a77bab21dbf0f9ce272993a3ca3a367/pysam-0.8.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.0 2023-04-10T06:27:37,268 Found link https://files.pythonhosted.org/packages/0e/4a/d1625792b2fd3a172d4bad096ab1559bcb7a81fa5fa6f9bc3937de23340d/pysam-0.8.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.1 2023-04-10T06:27:37,269 Found link https://files.pythonhosted.org/packages/10/42/7f51e1ad0c283e1d6bf826d3a193fa0644e675c9c6d42263b69fefc3b527/pysam-0.8.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.2 2023-04-10T06:27:37,269 Found link https://files.pythonhosted.org/packages/07/6b/3f48a2f05fbde46f2c52fc5f9adc15d928951cd54035109d553e14b774c7/pysam-0.8.2.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.2.1 2023-04-10T06:27:37,270 Found link https://files.pythonhosted.org/packages/f9/b9/8cfad46376335001f0cbbc46bf402fa107b0e8af8fe9e4192702b251f628/pysam-0.8.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.3 2023-04-10T06:27:37,270 Found link https://files.pythonhosted.org/packages/27/89/bf8c44d0bfe9d0cadab062893806994c168c9f490f67370fc56d6e8ba224/pysam-0.8.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.4 2023-04-10T06:27:37,270 Found link https://files.pythonhosted.org/packages/0f/37/fa514cb2163997551e95f63ec12f7bec7b640a601456f1d0ab3ab900c05f/pysam-0.9.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.0 2023-04-10T06:27:37,271 Found link https://files.pythonhosted.org/packages/40/15/20b22dc3d017ec123e533d062b982b111b0214168905de3221b5caf5f766/pysam-0.9.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1 2023-04-10T06:27:37,271 Found link https://files.pythonhosted.org/packages/f7/ae/59341d9fd2bed1cc32225115fc3f866a0e4e020f31073d698785c956360f/pysam-0.9.1.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.1 2023-04-10T06:27:37,272 Found link https://files.pythonhosted.org/packages/76/62/908776209238850eca22e7139cc23ce2ba14b2941ceb438b1572f84e8d82/pysam-0.9.1.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.2 2023-04-10T06:27:37,272 Found link https://files.pythonhosted.org/packages/e7/e9/db49c8bd39673c1f48200f69ccc34784016d664136f36e03a090411a95fc/pysam-0.9.1.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.3 2023-04-10T06:27:37,272 Found link https://files.pythonhosted.org/packages/de/03/02934438b204565bc5231f38a11da840a3c3e4b2beac8c8770d675770668/pysam-0.9.1.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.4 2023-04-10T06:27:37,273 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/5a/0b25d6d734e1797c7ce06442ff6714af53cb1c8cd6c6cfd1a32df4587e33/pysam-0.10.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,273 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/72/d2/d106b2fc317e838f7eea7140c8d0ad4df4fde6a456a526649a58397f638c/pysam-0.10.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,273 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0c/55/d775726477bfe55e06c88701c8cf9a4b2596a877b09e562551c00cf4a931/pysam-0.10.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,274 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/ea/01735cceef15296bad16873979ae6848efebbbc9ab20eba244d532846dbf/pysam-0.10.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,274 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/09/526378006226fb39eb54d9935c407c9b3c0302792c89e50d6b4f14d6f4b8/pysam-0.10.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,274 Found link https://files.pythonhosted.org/packages/87/8e/d2d8238558970df37c7aa01ddec63057a98042334e939b4c1c69cb9a2504/pysam-0.10.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.10.0 2023-04-10T06:27:37,275 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/93/f5/bfca0394bb90cc5993b7595d7c6aeebfc43dce8bf97394df4bfba9141caf/pysam-0.11-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,275 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/ff/7e0c6169883a26cee912ce25ef98893c13966cce1064fd6136b53e28d365/pysam-0.11-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,275 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/39/ba/91614d3e18818011decdb5cda8991cea11330d274399492822fb50b7478e/pysam-0.11-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,276 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3e/6f/2b166df4d7d55e2f69551b85ec2bba01048e5dc2307163ab8ad7d694bde1/pysam-0.11-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,276 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0b/28/cd6fde9c19444f779130e27195b4c1d9d896266e4e0b0bc8d515c031854f/pysam-0.11-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,276 Found link https://files.pythonhosted.org/packages/f4/bb/c5fcaace8857bdf8a430de41b5298c602fdce4917494f7a941c038e5861a/pysam-0.11.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11 2023-04-10T06:27:37,277 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/81/01/2304e5367c566f538cf64bad1bd41ec41e47d8aeefd197a209c8c1cf14fa/pysam-0.11.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,277 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/b3/b7ea200fc6e16af0cd2397659a2a2dd383f4ea71d2e0948f7215e73fb6a6/pysam-0.11.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,277 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/00/0d55946c0b1c781caee096ef9c4e9e54047ecf897874bf791c5ea8351df3/pysam-0.11.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,277 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/45/2a/b5e9e88b0d5097fa45f0832a05acfb39879679a087e55145198d47bb6099/pysam-0.11.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,278 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6e/0e/967ed910f8ce74ed5ea6b7a4775a86d05205963bf927a8452604ad277913/pysam-0.11.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,278 Found link https://files.pythonhosted.org/packages/be/70/16cdd6c5ef799b2db2af4fd5f9720df0f3206b0a06ed40e03692aa80ae25/pysam-0.11.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.1 2023-04-10T06:27:37,278 Found link https://files.pythonhosted.org/packages/89/d9/52995323a3a15e14f2cd579a49f953c804b36a1a7d7dc09a08b7de3591d2/pysam-0.11.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2 2023-04-10T06:27:37,279 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8f/23/12b4829036ce49ec068c61a28057029dd19a6a1a29855dff0efb785e0d12/pysam-0.11.2.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,279 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0a/d8/daa0986a5049b66b4ab2fc8093a17a961cedc75d1a39e1a4821d19f4f13f/pysam-0.11.2.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,279 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/34/5f/254cec485fedd72269c061262eb2bc36f8a438a5badb78c8582e46905623/pysam-0.11.2.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,280 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/cc/47ae71c341bd822dfeec2148f6521c1bba690e4581814114519b3cc611d4/pysam-0.11.2.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,280 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c7/b0/4acf13c3b125db232e8ed93fec3e5b3a90abe47fd27aaacc15c9e03caf6f/pysam-0.11.2.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,280 Found link https://files.pythonhosted.org/packages/4b/d2/152284e08c551471c7a7b9b23b4d0916637705ee4f979314ca1750b37c83/pysam-0.11.2.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2.1 2023-04-10T06:27:37,281 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/dd/2a9226b90d8c98482209617c2376434e1c19da4981de49c78af0e763988f/pysam-0.11.2.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,281 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/9d/d30859cf5a7555719e9b28d34f61bbd4ef0e811fb8a857a986ee9913b79a/pysam-0.11.2.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,281 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/34/b0a7ece94bf7af7d482282ccd8430fe291147960d900b514b7aa606c9170/pysam-0.11.2.2-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,282 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9d/a0/2bc18552108cf9605e0ffa7c31673bc56653c0cd7521730a2d5eeb06939f/pysam-0.11.2.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,282 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/c0/18436ad1db0ed38c997b7fda42db8b6489c50abcb321320015de12bdd164/pysam-0.11.2.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,282 Found link https://files.pythonhosted.org/packages/a4/1b/b6dfd92aea876647d20d9a8bd8618e4f2af6300539426be83c8bb0912d6f/pysam-0.11.2.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2.2 2023-04-10T06:27:37,283 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/be/3c/9c0d31f4baa506057e781641325f52f709ca4fe777065e39be08e690752b/pysam-0.12-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,283 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/5e/f1/28f7e3df4941ac01c2c1794b1009000fad81cf026da6c04e223e5e86e6ad/pysam-0.12-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,283 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e7/a7/9225250a464b91caba6c88e82b59755e07a30aa803085febbb923655d2d5/pysam-0.12-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,283 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c6/ce/08728c6f395b46cdb75b79d4c554184b624fbe344a6a99b62b1a7f58a5df/pysam-0.12-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,284 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/bd/a741af36309bfbd8d40e5c5c9fc9f2ca3c7a86c2d1ff7c2563a81d851a44/pysam-0.12-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,284 Found link https://files.pythonhosted.org/packages/0f/e0/19046ae89307ddeadfa8dabc305a9cfce67865de06b762057edd84bc0fd6/pysam-0.12.tar.gz (from https://pypi.org/simple/pysam/), version: 0.12 2023-04-10T06:27:37,284 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/bc/9d27138acddecbeca3a010691e71e89ad02e5c6dc3a38ca9d8cc94c92295/pysam-0.12.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,285 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/d9/7a508464feb23b750ba0d56e10e014f0d1a8cd6a4e8fe3887c75affa5fa9/pysam-0.12.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,285 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/d5/4b67f2767fc352d8246c3eed4ce0f5d61fdbf6cef6e5b57d433ed63f7ed8/pysam-0.12.0.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,285 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/d9/91db21a596a3a896365a90c5b44c6722b4e0acfd5e90c52071175e77aad4/pysam-0.12.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,286 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/50/28/f3a3989a9a34fa6c84fdba3d80b4b1624b2c253d7906a13638152b20555b/pysam-0.12.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,286 Found link https://files.pythonhosted.org/packages/b9/98/d98b250f98a6b91df71a03083219bec786cdda5408f77997f8ad81d06058/pysam-0.12.0.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.12.0.1 2023-04-10T06:27:37,286 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/14/cd/676a08a4bd77fd21716add76f946235780a5673c75c7408b2449db2dde5a/pysam-0.13-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,287 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/59/7e/55048651e80ca7ebbed41489ec53da863a500d536fbff5884175e81b40c1/pysam-0.13-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,287 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fc/63/4a758298dafa37a719540fd55c4e76de15e3ad6be0201c9e0e6ed59b3d8c/pysam-0.13-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,287 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8b/08/8f6ea307458945f9e5db70e460b7902f210f08646af35800372907095f06/pysam-0.13-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,287 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/dd/5f41722f95749537e2f5a84414a4b08fc4e14d39552df8171e375129edf5/pysam-0.13-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,288 Found link https://files.pythonhosted.org/packages/31/17/31d317006a74941d2caddac97c5106601fe4da467653d0f061702e9ead95/pysam-0.13.tar.gz (from https://pypi.org/simple/pysam/), version: 0.13 2023-04-10T06:27:37,288 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c9/0b/ca7620a778a1ac5a6669b750ab82cd8e2ca29f671cf2ab929cf907338bf5/pysam-0.14-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,289 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/ff/a7cdcde7f79ca59cd6a6921f55f0cce8fb3d4ff273257e313efc3e52853a/pysam-0.14-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,289 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/51/c1/474c632acbbd7c06921a4ad31b237c3f41fe662101ec775be6a9c3c8cf20/pysam-0.14-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,289 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/53/6e677a66b02755d9d631a7ffa37b23b8eca7b2463faf14dcf3bcbbcbec24/pysam-0.14-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,290 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/96/7b/845e49997825cf2aaef3719853e8d2d07b43d3a5e096cb9863208b7d0af8/pysam-0.14-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,290 Found link https://files.pythonhosted.org/packages/d8/78/8b3fad13d3bd8787c0d922056061727c2a0cf91c45a836c98342594dd293/pysam-0.14.tar.gz (from https://pypi.org/simple/pysam/), version: 0.14 2023-04-10T06:27:37,290 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/cd/9b/2627df910452b49bef57dd5ce720832d49faadea3e3d86f940f168b807b4/pysam-0.14.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,290 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/96/a9b21863c30c00bde76ab9bd3b538ed9f4d872f6767217c930cd0246fd21/pysam-0.14.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,291 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a0/ba/95ee9ea7921ae153c51880ffe047269a7ccf396442214f4fc965cc66ea68/pysam-0.14.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,291 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/a9/d74aa164efb28ce328cd4890b0182ccdf2e781c192910072717c965765c6/pysam-0.14.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,291 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/97/bb/65b3a258ffca71251ae1d07c1d3eb54448da31ee74106e49e2f251f066d4/pysam-0.14.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,291 Found link https://files.pythonhosted.org/packages/fc/9b/4bb8d016406dcff47e2866e14d3dcb10741ec3920649e8c521996830944f/pysam-0.14.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.14.1 2023-04-10T06:27:37,291 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2f/d8/57e6c36c4069e3b240115b3cb98bf1d5a2989d76815aff14fb0149d27781/pysam-0.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,292 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dc/af/c14708a4d43effb82bd14302e41e9fa818b724ada9b9d89283319a22a585/pysam-0.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,292 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/77/2e258a5ff090226516c4338d682c6f8ed13e5be2ac7a67e6b452b04b0237/pysam-0.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,292 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/5d/d96d3662647a3cf33b1e3fe6d21eaecd00f47d39edbe4cd85486639cb603/pysam-0.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,292 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/da/6a0cc06c65acaea0b8830e632712d53fa8bc88ea19096038b3bef22b25da/pysam-0.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,292 Found link https://files.pythonhosted.org/packages/f9/c4/f1b6963a05f415aa69c8efd64ebe460d56d03ecc75db70b0e8606b589ade/pysam-0.15.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.0 2023-04-10T06:27:37,293 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b4/d8/9afa92bd4b48ebd6896d22bb7cdaeb5aa4577983333df5e99160c62fb6ff/pysam-0.15.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,293 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/66/6b/f1a4f142d884b6e1cda6542bf4b89ce88ad8465197511d83994f2cf6484d/pysam-0.15.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,293 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/5f/030c774b44932d2e23d773558679d553fb31dd5ecdb094b8e26b316de784/pysam-0.15.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,293 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/37/27/7d7ce83c0acac59b95849f2fb678484147f1e1393162ee0975cb7f84e53c/pysam-0.15.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,293 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6f/f4/e12faf1618e977a868fe66d40288fc3dd989a10cc4c77603da33a7634a18/pysam-0.15.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,294 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1e/04/3e22a04ade5291e968b3f3e9195929574221d86fd8982a4976a40b045060/pysam-0.15.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,294 Found link https://files.pythonhosted.org/packages/73/59/c319f1bde3019bbce4583cecb12b9e3e52ffcfbe2c96d8b1fb131c0d4fb7/pysam-0.15.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.1 2023-04-10T06:27:37,294 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/7d/68b6555c7bb414b655495305d2add784c251fc83d4e698878e6d1d35fc9a/pysam-0.15.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,294 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0f/bd/f5ab828a9ff45a6ca14d5ea2a3580f720134052db258cd7ef929a4ed1d7a/pysam-0.15.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,294 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/04/d5a6386b6d124bcdf27d81ab952e5d24e37ff98b97f992aa5b83c647e9c9/pysam-0.15.2-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,295 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/aa/e6/0b18d30c30e3690c5774446c1d7246c5e37c4710e38d93a20bb56cad4bc0/pysam-0.15.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,295 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/fc/d2be1a093bd8494ab63e3168aca36c2494753bbff190f3201ce2e7da9cda/pysam-0.15.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,295 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/1a/4fd27da2d19f7d914f757097605709a6509776b4cb63f42bca63f3531058/pysam-0.15.2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,295 Found link https://files.pythonhosted.org/packages/15/f6/ce0611aaa1865a616f7dc164fbf046eaf38f2b17c6d404403c56250beb93/pysam-0.15.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.2 2023-04-10T06:27:37,296 Found link https://files.pythonhosted.org/packages/15/e7/2dab8bb0ac739555e69586f1492f0ff6bc4a1f8312992a83001d3deb77ac/pysam-0.15.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.3 2023-04-10T06:27:37,296 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/bc/99/5b711afad53f7ebdafc182bae1642fd764e569a8c0de9408ea6138c668b0/pysam-0.15.4-cp27-cp27m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,296 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/28/60742ebf8afa6efdf7d2cc3552cbef24da33bf0f76b26b5afef2406683fd/pysam-0.15.4-cp27-cp27m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,296 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f2/c1/8f1562c2b89bc5606a3e8c57add0078af4cee3050507eac4b67b37309b16/pysam-0.15.4-cp27-cp27m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,296 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/f3/2b9802c61089f6c94c73f902f17046c416793da9242dfe73462e79ec4635/pysam-0.15.4-cp27-cp27mu-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,297 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/68/7b/a54f66a8b126c0d6eefa3f71ebdd46bf967c0452759b553432e845e927f3/pysam-0.15.4-cp27-cp27mu-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,297 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/c6/a337077e2cbae228a7f1b0ee1d97b240609c9377b6d46df9dc0a477eff73/pysam-0.15.4-cp35-cp35m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,297 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/55/9c/b064140318b64910f0a7938b385f10b88428aaa50f720038b2927a7db908/pysam-0.15.4-cp35-cp35m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,297 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3f/b4/075c25bf8e1aaa11d178fdfe267d73f1ea14f9e90ecb0fe58cb98911bdc5/pysam-0.15.4-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,297 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/78/df321a985e93be0d2dbf2249e9d79a33131381e8d9ef5c965db643183561/pysam-0.15.4-cp36-cp36m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,298 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/cc/a9546377a762a84bd17ca313f182e8eba833e579a568c3d62571edd8c2f7/pysam-0.15.4-cp36-cp36m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,298 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/01/2be4def91aeb50ccb963879b8193ca667087308696f2fe6aa86c6da9db72/pysam-0.15.4-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,298 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c1/b9/4a37921da49d89c855b0fae747843b7d07187edd4f35d0069a7b02ce89cc/pysam-0.15.4-cp37-cp37m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,298 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7e/46/d3abc41217b9cdd97109ab648094915ea55038bfa1d7d880012652704b37/pysam-0.15.4-cp37-cp37m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,298 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/ee/2c5dacd21d02d3bb7c7baf03dba8f42bc4af8b02370b7e52b6e5425d2366/pysam-0.15.4-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,299 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ae/1d/8569d5bb7592afa48796e2fc743372eb690c776fe21dce0ccb9607a202cd/pysam-0.15.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,299 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d3/77/b885532e487e15db1b78fa2ecf00ef6edf5f4743025080941f60924da6ea/pysam-0.15.4-cp38-cp38-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,299 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/78/63/0e143ae469f418cfab28fb165936d4101e1b813e3ce657762d51723ab38a/pysam-0.15.4-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,299 Found link https://files.pythonhosted.org/packages/25/7e/098753acbdac54ace0c6dc1f8a74b54c8028ab73fb027f6a4215487d1fea/pysam-0.15.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.4 2023-04-10T06:27:37,299 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/55/6f5ce9cfe9631c32b58d50be54b2d1ef7e53937d6e9208ac98ea41cc264b/pysam-0.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,300 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1d/c6/49045eba4ae325d15e9de03802a633fe0d8e9ac2d02ad6de723ca99a9772/pysam-0.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,300 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9c/24/537e86533e773c3dcb6bd05de60bf118cf8ccf60dcf24386a5c3807120bd/pysam-0.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,300 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/92/44f62c9b75b8f01f4671e7d4ac0951d3379126c7e2d280ebdcba3d7cb0df/pysam-0.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,300 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f9/21/dc7ec647d83a21a3b805a20f0039f466d5cfd4acc40f411aaf78da83ebb4/pysam-0.16.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,300 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b6/ad/442c56d798a3e8c762f71af8c8c7f75c16599f6e51e1f6dd4df1688ad6d7/pysam-0.16.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,301 Found link https://files.pythonhosted.org/packages/18/74/69018650a6ec9dae2eb2f710e158fa395134ce579c605f152e41890e7f3c/pysam-0.16.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.16.0 2023-04-10T06:27:37,301 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/57/65c688a9f5757c82fc3954e5562725dbeaf3866f13d71d92d715263cd707/pysam-0.16.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,301 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/ab/a7f2637b5bc8fb278aa9b5a5d4eab70856625c09b1d95328e3b78132847c/pysam-0.16.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,301 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ca/09/ad780f4430777a7bfca63ee2d4d4584436d2f31f010d6bab743cfc97da48/pysam-0.16.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,301 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/a1/73e80a7a873f3fb0e52d368a4343eb9882b737c932b95020d82251f1087e/pysam-0.16.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,302 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/85/335857b9888f6d9a13b03a8f21b0a6228b180c361631d9d70e7be3e22163/pysam-0.16.0.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,302 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8c/e6/a26fac418a7481b5ce1ffc162fe033edc9a935536f893a0838842c011371/pysam-0.16.0.1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,302 Found link https://files.pythonhosted.org/packages/99/5a/fc440eb5fffb5346e61a38b49991aa552e4b8b31e8493a101d2833ed1e19/pysam-0.16.0.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.16.0.1 2023-04-10T06:27:37,302 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a5/28/88c9bc6527429dc7de1e8eee674cea4c9c6a0e6791b711a7dcf28ce96592/pysam-0.17.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,302 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ac/88/721b1d38c80f8183887dadc96be3422cdad13fb0acc7ffa73594f9bf1dac/pysam-0.17.0-cp36-cp36m-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,303 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/03/ef/6e7342dbe0571fa078bd312f07dcb9b0693b89f8f6fbdf7876e4423374b9/pysam-0.17.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,303 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/99/f7/e01c12c24e73fdf2d87cc601ff119a4e175a6215efe9eb7b19c4ad37e22c/pysam-0.17.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,303 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/12/71/7b479540c2baf07a082cf266d0ca34c73f8c77298fad12942225c7d580ac/pysam-0.17.0-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,303 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d7/67/72012321601a2a0ff98903a4d5b71f695682baa034f10d6f675c9c8d0aea/pysam-0.17.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,303 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/4a/63786ee93e636a16c478a06aa2589fb9280eb41199dfc2182313ff56c3f8/pysam-0.17.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,304 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/05/02/9f79e6d100f3520e9dd33398ca5727d126fb81075ed78d797c3cf8eb8f3c/pysam-0.17.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,304 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/22/94/f6b8e682f9456ff7e29715207169c0eb2d5a98741d82bc89daf3fa048f7b/pysam-0.17.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,304 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/b6/1534473335178ece5b2133337564db90472b12b8dffe21124445b1847457/pysam-0.17.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,304 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/21/01fdca4c351f969629556a720599ea2daca3ce0bcf7cddc4b7c78b83da17/pysam-0.17.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,304 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/af/723d22ff52b846efdbb693e00e8bdbc39bdcb2952b1deeb8551a9c842691/pysam-0.17.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,305 Found link https://files.pythonhosted.org/packages/bf/a6/b1802ac26bb501ce8dada6f41dd83cdf591ecc834f2c208b07c6d97eba84/pysam-0.17.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.17.0 2023-04-10T06:27:37,305 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/9a/d75f5da85e0bd0f9f56a6a70dbd01a27c06dc6e22a5821b0ed38abf4b78a/pysam-0.18.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,305 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/77/72/e3ca6db84546a87fe2932c0078a6f85df62b5358e0a34ac7225bbc23fc52/pysam-0.18.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,305 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/01/c2917cad72433c4fad038b80cfd52eb79e9364636cd581efcc5fa1a6e0e0/pysam-0.18.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,306 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c5/10/a07e015f79b8f3a946a5f960cdf817e75bce99498acafc534b3355c73fa9/pysam-0.18.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,306 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dd/df/d556f87e14106fb467be0a0c9a960930f5e6d0d825c99060e248831a3457/pysam-0.18.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,306 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/9f/9be10fcf302feb446244d4691008a4899e94e19b3c8aeea461bd89c7ec3f/pysam-0.18.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,306 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ee/d2/ee6a3cb818db9c8cca8e7edd29526e2dca93fed1316a6c6cf7a9465a5b3b/pysam-0.18.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,306 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/06/0b/ae4a2a28d7f84f6bb09de5392e093c17a3d232b902b54bd3415b0919c9d8/pysam-0.18.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,306 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b9/bc/2df0c67e2c2d6130b01fa0e4f8c137d5749bfb3d618d1c6a7dab450133aa/pysam-0.18.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,307 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/35/9a/dd9abdaacae2c23982612a218810f866e3f82ef3925f305d640bc9df7f28/pysam-0.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,307 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4f/5a/cfb4cb6102335003a238e6d98e31ca23b42c9bef79cdf4ee55a1ab8b4cac/pysam-0.18.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,307 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/41/0f/4ffdea619a8898c936f6f1b909759486167976d761fc265f931119f0da1e/pysam-0.18.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,307 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/32/fb/4b78459c42ed9e7f5cee1304b6ecedcfcb74843619855ca4a1f15704a4bd/pysam-0.18.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,307 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/52/19/786e6b77ea6d3545ee145179da8d3d7a07ee9480a930ad6c647bf1e764f5/pysam-0.18.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,308 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/8b/13f22de05979c3aa2d2fb1c6627cf1846a59677ee457d30fe6e528d5938e/pysam-0.18.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,308 Found link https://files.pythonhosted.org/packages/15/79/00249a37089a6aecb70a4080f8af8d88e7005e2019c71e505c3ad3a0a018/pysam-0.18.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.18.0 2023-04-10T06:27:37,308 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/45/0a/2b0c483ea77567834b6e8185cd17cae2e40cca00534c5d8d61470b9efa90/pysam-0.19.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,308 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/17/4e4228ce33b8064b72266e68145911080eea227568a6b9c788e74ce5536f/pysam-0.19.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,309 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/a2/021bb0875543d0712823884c41b25e52189315a6081fdf53a32861382b37/pysam-0.19.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,309 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/b2/e1f9fff5d7c6afd26ff1b1798d5404822d99185cebbf3ade43ceed4e6a7b/pysam-0.19.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,309 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2e/a2/38e006ddb689d20c7842f7f00176f4f3c92a881350df67dde9c5894f8c7f/pysam-0.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,309 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ea/37/3c0c1ab1ad34d8c67db3052cb9301daeddedd3c84289b61cb95872324570/pysam-0.19.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,309 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/17/45/c5020545abf3138c1f94a5324bc59dba5b4e42634fafebb171dc6fe13574/pysam-0.19.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,309 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b7/49/a21697b94eac17fa3a73c419c8bf999f5bef8d37e03c3dbfc987c7709572/pysam-0.19.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,310 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e0/bb/26dabfedf33529cd17ea859450b46c2547b73aac6eff90573d1b8154abd1/pysam-0.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,310 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/da/70/79fec72c55234486f516684225a76903228511ba672783c245d0d4409a1b/pysam-0.19.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,310 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2a/6f/159e60484c50fabfac44783edce6208f1b8864eb001d690550a191f154b0/pysam-0.19.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,310 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/56/16bdbd513b9d9df090ce7d5d03eeaa26b794b109fefda4fb8af7165446b9/pysam-0.19.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,310 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/79/a7/da0e9848b3a78c5c3770e8b77ae3e46dc42f0f8e7f1239e825a7a9c1fac1/pysam-0.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,311 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dd/c5/8bb6517beb7acc3bb384ca98a66c9286003a946643bfd6de3ed1f9ea63a7/pysam-0.19.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,311 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3f/ee/24ddc6dd4425d83bf9fb0b24aa840134d99a09509d819b6b1393fcb27e16/pysam-0.19.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,311 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/41/4b65a3840c8bc14a4c97d9c66f66a6c08a30d8cc58ef9b45ee9de3bf5fe4/pysam-0.19.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,311 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/05/28/475ceedb85a8ef357af5b5394e9ef4ae0a317de651ff9ac6307e6f527b2d/pysam-0.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,311 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7e/fb/347f914e5873ec7405b95891fa605c3330d24462f00e7d230b7eb8e3df4c/pysam-0.19.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,312 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fa/31/570861d7b2eb6d605454a80ded377a0945bcc0cd19e804f29503d0f38aca/pysam-0.19.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,312 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/03/86/c40d02c99a7da3026ed69add5b2581a31f8d18676f2401811df227d17655/pysam-0.19.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,312 Found link https://files.pythonhosted.org/packages/ee/95/aef9a843807c00bb6b4e6c0cad0e69aa161ecc0591f3ece985fd24298f21/pysam-0.19.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.19.0 2023-04-10T06:27:37,312 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a7/82/968480f3e29bcc8dfd8b0a70654eb9e68f6b4d1e82e2a097615a8fa23d1a/pysam-0.19.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,312 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8f/fd/ff98658c0ca63a18269937330229447bcecda36845b896bc53b0ccf0e3c8/pysam-0.19.1-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,313 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b7/fd/2a054df7bed8080b6e973d5cece0c1a0b2b29fc7caec305bd74a957a4694/pysam-0.19.1-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,313 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/85/74/25e9707eca858bd1d838673798da26388e4bb70b5055e6a932857e8d7193/pysam-0.19.1-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,313 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/42/b8/22dca6472627ca6db890b8b96fe3072c1664bcc8dea0de72bc4ad5d5c06d/pysam-0.19.1-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,313 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4e/80/6a74aa85894649e1fe6c54cc967b34c5038184504b30babb2dfa4e659aca/pysam-0.19.1-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,313 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a3/16/9698f98a5158e6a54af67a690791e96de5e7bec25fc0a85c71f07562d4dc/pysam-0.19.1-cp36-cp36m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,314 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/76/a240c320d38f7b1b0276ec813a86b62706d0889e10e45a3b75199d46d21d/pysam-0.19.1-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,314 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/9a/b5331a776d809d480ae8de43e3dfd4f4f95e0c8fde2ae7ba1834f55541c1/pysam-0.19.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,314 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/06/3f/19b41f46e1d3d87c436953561d58b13cd7cb0d1cb427dab43219ac772d21/pysam-0.19.1-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,314 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a3/df/d21eb45113df10eed4643a3dccc88dcc9ffaaaa68b05cc64c95224e17682/pysam-0.19.1-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,314 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/aa/8d3f39218e6195306226bde4501ca472ea6a949bffaae3ed524a0979d197/pysam-0.19.1-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,314 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f5/b8/0d014ca37b39e082de98c8e663082ffc2dae5ee96ce9781527f5f8e1339d/pysam-0.19.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,315 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/39/d6/3dcb9d0304c265e95bf2f75e1f3caa1c9994569215f513f164bef22b8ff6/pysam-0.19.1-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,315 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/16/3a/c8705be2ef8c58abf5acd99d9acc4da2b4587db883622fbbe4064d79cd7d/pysam-0.19.1-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,315 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/69/4618c6f6fc55fc014f32b273d572244244180dd2c38c21b3a4bd4b7db482/pysam-0.19.1-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,315 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c2/ba/ad4f8bf3c1040c383480315dc95430c191ae5efc90e425498b84f7b277d5/pysam-0.19.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,315 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/18/87/deed4855181dd5c2ebd0781aa80e8d2978d43b0ce0faefec609b45bd2767/pysam-0.19.1-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,316 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/21/97ca4f1e0766aae90bce672581edfbd791656f7b65689dc38de6c906ee86/pysam-0.19.1-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,316 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a6/b8/ca778d0daaf989a10afac71db2427784b430b2b73c586cb9a0bfa408afd4/pysam-0.19.1-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,316 Found link https://files.pythonhosted.org/packages/a0/10/f6d705984838f8620ff597dd99d3904aea7727b4824bee22de8f44b4ebd4/pysam-0.19.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.19.1 2023-04-10T06:27:37,316 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/12/e8/1157591647bef8afbdda82b3a9aeeacc3b57dcff22ec546b2b7dc03641a2/pysam-0.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,316 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/10/b5/1fe09bbff3ea6bbb6d8211758736327144c00505204a942bb312f5a869c1/pysam-0.20.0-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,317 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/67/42f8148cdc23559593023a4394b3043c280efc1439dd2f5f414f38e6f2c1/pysam-0.20.0-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,317 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/17/90/6408a9015530685cc76182605ffc3ec5ecf20c194ef2fcca287b289d36e2/pysam-0.20.0-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,317 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d4/48/35ffba4dcfda138c0722fefa986584d53614c2d049ab1fb67d9d87a00c0a/pysam-0.20.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,317 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/76/2d/0d56cdb2b0a8a9823a3a221a551d6c630815f0c407a33d5ce1c47910029a/pysam-0.20.0-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,317 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/23/7091e3182e685a7832425178f6b6e73593f9cff0ba51b5a71b43ef2525b9/pysam-0.20.0-cp36-cp36m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,318 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e8/2c/f989a55927eb416520e64ee711665ef589b8095a385c2564e1e15226e597/pysam-0.20.0-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,318 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ec/6a/8d73eda449bede59734254688ccb182493667467aa8c2be0dbf64fa68689/pysam-0.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,318 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/65/e69e94905ea18ee478066b96863ef2d91f026661f4bb18106f6b0a532f24/pysam-0.20.0-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,318 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d9/49/a5d747be0e8f0044f52610ceed25b27a15a419b3f46f425507636f137484/pysam-0.20.0-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,318 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1a/f1/05fa22e7917afa8b0506d9dadc885324544f759d8a25cdd331bdad47d580/pysam-0.20.0-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,319 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/2c/23e8e5cdd6a91a50923653a77c05db872f865a43becac463f0b2963a8199/pysam-0.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,319 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/31/e7/019194574aa007c7dd6fe7ac1558d540fb397da4e8eb765542fdb92ec25b/pysam-0.20.0-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,319 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/34/3a/b0d850cfd1fc16ebfd44015af3dfe300eb3f7a39f495629b30685daa9e50/pysam-0.20.0-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,319 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/58/3f/746463a52b7e43ccd7ace167a4c64f96cb8a5fcd14a3cdae9c36deb28d41/pysam-0.20.0-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,319 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/f8/db158ef30ca895c78c9265f70be9c8e225857d2aa62825d879c775879cf7/pysam-0.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,320 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fd/97/91a89da0db78e9f60d9107131b5725dd114d6c109cd78728b1c793dd884d/pysam-0.20.0-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,320 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2c/22/85a2be2a21e3c31657b6c4726237dd1335faff64aeadb999f31671a3cbb5/pysam-0.20.0-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,320 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ad/dc/93c92f425e61b22ae175cf4a83d8ba192bc82e9671f1cce262a92ae86911/pysam-0.20.0-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-04-10T06:27:37,320 Found link https://files.pythonhosted.org/packages/e3/ad/b300abaf0de2834104b671db5aebe71616d7a36fa09a2b8a03068eb7e932/pysam-0.20.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.20.0 2023-04-10T06:27:37,320 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/f8/301c2f966eeefa53ed5447b8909a7b123971d711794efe787dc2601ab9b4/pysam-0.21.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,321 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9f/d1/b5a212aeb99ba3a17a93ea5846bc36fd0c9e5dc26d9395c89b72243813ca/pysam-0.21.0-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,321 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8e/6b/48e0bed14999ca1c6bf9c8127d9c0df9bd0de97159d4d8169aed0e2a1e9d/pysam-0.21.0-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,321 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/ba/d9a85addaaceb6e64e07498aa2f49c34851c72e1c367e91b43b47a6cdd91/pysam-0.21.0-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,321 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/b8/25f28c27f0f002172d02be5f8c7f65d13ee4535193da7690b32e84f04e53/pysam-0.21.0-cp311-cp311-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,321 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/44/a7/efdfb962af008eb2f0425885a230a7dc288de1bb2f09dde3d938a2ee540a/pysam-0.21.0-cp311-cp311-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,322 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/54/5d/147329f6731e3a04bc0b9be1561eaff5ae739451636e8215ab70dc2aaedf/pysam-0.21.0-cp311-cp311-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,322 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e0/b7/6e7629b3eb5758fe06a899847722c6f0b1836665e0b6f5420d5af2b855c5/pysam-0.21.0-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,322 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/03/fb071afcfc06d711f5526c4858ebeec0ee23d52f0a8bea3bed30d36e14d6/pysam-0.21.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,322 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/ce/9beb4abf34700b1af9a311970d644382b777218e98a791a60f504d6ec6f9/pysam-0.21.0-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,322 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/91/f53b59e9e273e2c906db2696b92eedc7d9e5f9d2d62134274b8316193f83/pysam-0.21.0-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,323 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/4e/cdbe48bd15a9183b89864f54b838f4b7a39f12fe9fe407140e05601e48ba/pysam-0.21.0-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,323 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c8/7b/4f2edd7020716f37a94bcb6e30eb2957fcfdfb1accd52856702a075dd7da/pysam-0.21.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,323 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a1/e0/767a3a55fdb539e931614f0bd74761c693c1475a8413dc9862ede27cec25/pysam-0.21.0-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,323 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3d/28/7ad11b60fce5d7fbd98f97996547f682d19dc0dcb287e7d0bfb26dab7364/pysam-0.21.0-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,323 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/87/d973a869f38c8d0c85e9ec2b588963974506971508bc343b0618708b6ec1/pysam-0.21.0-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,323 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f0/2a/c03e854221f6987f1c03b833dd469b662ea80e5bc63597d171167d64b8a4/pysam-0.21.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,324 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/0a/3d683e7f753d55d55cd1074afe6b5c631efabd10167f37b45ba4b1208d7d/pysam-0.21.0-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,324 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ec/4f/92accd8e20473087805de5ec2ade5f206ad2e1de78d32ee59abc04645d3c/pysam-0.21.0-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,324 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7d/55/709217f47472dfaedb0e3fa9462dfdcdbe809e1ed84cc0de54b5d11842dc/pysam-0.21.0-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,325 Found link https://files.pythonhosted.org/packages/16/1c/a4999d93d6fd7791349f0822e1674b39971fe30d3b99638209ae6de3dfc7/pysam-0.21.0.tar.gz (from https://pypi.org/simple/pysam/) (requires-python:>=3.6), version: 0.21.0 2023-04-10T06:27:37,325 Fetching project page and analyzing links: https://www.piwheels.org/simple/pysam/ 2023-04-10T06:27:37,325 Getting page https://www.piwheels.org/simple/pysam/ 2023-04-10T06:27:37,326 Found index url https://www.piwheels.org/simple 2023-04-10T06:27:37,509 Fetched page https://www.piwheels.org/simple/pysam/ as text/html 2023-04-10T06:27:37,553 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp37-cp37m-linux_armv7l.whl#sha256=9c3272be6b4de106121816d6293381c004b78ba8a3d7307e48b0a594cef33224 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,553 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp37-cp37m-linux_armv6l.whl#sha256=9c3272be6b4de106121816d6293381c004b78ba8a3d7307e48b0a594cef33224 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-04-10T06:27:37,554 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp39-cp39-linux_armv7l.whl#sha256=02833470b689b5f0801b783b4d39663d1fd225749f8246f0e0e22c31894a30ee (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,554 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp39-cp39-linux_armv6l.whl#sha256=02833470b689b5f0801b783b4d39663d1fd225749f8246f0e0e22c31894a30ee (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,554 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp37-cp37m-linux_armv7l.whl#sha256=4081475d7ce179d2af0551894162bc12f3ebc2a9b5972cc673d6544ca9e2ceee (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,554 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp37-cp37m-linux_armv6l.whl#sha256=4081475d7ce179d2af0551894162bc12f3ebc2a9b5972cc673d6544ca9e2ceee (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,555 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp39-cp39-linux_armv7l.whl#sha256=048151df693a8d132abc090b4b7c148deb484684316e3a945d7771fb140740b1 (from 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https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,556 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp35-cp35m-linux_armv7l.whl#sha256=7e6c3ed0b982b419a6598567be404d2d3950648edae8f3abd3c23d3e7d98d163 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,556 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp35-cp35m-linux_armv6l.whl#sha256=7e6c3ed0b982b419a6598567be404d2d3950648edae8f3abd3c23d3e7d98d163 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,556 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp39-cp39-linux_armv7l.whl#sha256=bced640fbf8ace81d87f3987edb796cd87595e2187087985e55a19a09f61beae (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,557 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,557 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp35-cp35m-linux_armv6l.whl#sha256=43c9d64012c0bfedaed47b3e6a06d9191b018d315a9894ec814d3f6482421c05 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,558 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp39-cp39-linux_armv7l.whl#sha256=eaf2bc89169869052d491a0d13c93889b72d0f8eb53fa05805ac3f4dac239b59 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,558 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp39-cp39-linux_armv6l.whl#sha256=eaf2bc89169869052d491a0d13c93889b72d0f8eb53fa05805ac3f4dac239b59 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,558 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,559 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp39-cp39-linux_armv7l.whl#sha256=5dd1936e862f220b58ec528032224b67ebb11d86663004141e538c25818d7d5d (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,559 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp39-cp39-linux_armv6l.whl#sha256=5dd1936e862f220b58ec528032224b67ebb11d86663004141e538c25818d7d5d (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,559 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp34-cp34m-linux_armv7l.whl#sha256=eda5dc98fdf3820ff830d0bfdcf4f1cd4b165073480d35425d31270ff4461e91 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,559 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,560 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp37-cp37m-linux_armv6l.whl#sha256=f6c36385a1dd01a86450694e529557dbcb2c25fd6b7e16faf219e0f4c5c4c3ee (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,560 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp39-cp39-linux_armv7l.whl#sha256=f362a21d3d76e12110a57f6a4318e7c6ce8d4428993de45100ee729c34870663 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,561 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp39-cp39-linux_armv6l.whl#sha256=f362a21d3d76e12110a57f6a4318e7c6ce8d4428993de45100ee729c34870663 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,561 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,562 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp37-cp37m-linux_armv7l.whl#sha256=0ea8f2a31eb4fe9b63faa9568018f24905a3eec27d604487bf016925d66a5e6b (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,562 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp37-cp37m-linux_armv6l.whl#sha256=0ea8f2a31eb4fe9b63faa9568018f24905a3eec27d604487bf016925d66a5e6b (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,562 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp39-cp39-linux_armv7l.whl#sha256=4cfa381ee91c4311118a9780b7b07170f4f9550e5d5e4dd0da3bd4a16d7786fb (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,562 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp39-cp39-linux_armv6l.whl#sha256=4cfa381ee91c4311118a9780b7b07170f4f9550e5d5e4dd0da3bd4a16d7786fb (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,562 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp37-cp37m-linux_armv7l.whl#sha256=7cb3ca927656dba4156f14b6b3610b966278b18f444e00aea9ffac982ba819d1 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,563 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp37-cp37m-linux_armv6l.whl#sha256=7cb3ca927656dba4156f14b6b3610b966278b18f444e00aea9ffac982ba819d1 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,563 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv6l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,563 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv7l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,563 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp35-cp35m-linux_armv7l.whl#sha256=5c047d54e81b6a5b5e981f5cb06c1a254a88430aab077f1383a46f1cf3a89c53 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,563 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp35-cp35m-linux_armv6l.whl#sha256=5c047d54e81b6a5b5e981f5cb06c1a254a88430aab077f1383a46f1cf3a89c53 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,564 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp37-cp37m-linux_armv7l.whl#sha256=8c6118b4d383a61894eae23d146e36c0f0afdf8b5743c53eab210b7211a4eb6b (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,564 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp37-cp37m-linux_armv6l.whl#sha256=8c6118b4d383a61894eae23d146e36c0f0afdf8b5743c53eab210b7211a4eb6b (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,564 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp37-cp37m-linux_armv6l.whl#sha256=3d027ddcbfc55b9a3f2d7783d1c40d6a7f4aac2f5553ff18b18b9a2db18c8818 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,564 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp37-cp37m-linux_armv7l.whl#sha256=3d027ddcbfc55b9a3f2d7783d1c40d6a7f4aac2f5553ff18b18b9a2db18c8818 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,564 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv7l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,565 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv6l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,565 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv7l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,565 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv6l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,565 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv6l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,566 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv7l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,566 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv6l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,566 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv7l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,566 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv6l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,566 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv7l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,567 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv6l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,567 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv7l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,567 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv7l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,567 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv6l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,567 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv6l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,568 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv7l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,568 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv6l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,568 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv7l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,568 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv7l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,568 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv6l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,569 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv6l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,569 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv7l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,569 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp34-cp34m-linux_armv7l.whl#sha256=448531babc920f3709eac98ea2cf570cc10d0f7aa1b1e9be63ae30ed486e9b2c (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,569 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv7l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,569 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv6l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,570 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12-cp34-cp34m-linux_armv7l.whl#sha256=c94eb91b2a476b0f28dffe6194d72d1853055291b9453996e0414cf39391af23 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,570 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12-cp35-cp35m-linux_armv7l.whl#sha256=822538c1598af9814465b2d57bd13f4a72f3084489090e3ad84abb3b9b7e5cc8 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,570 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12-cp35-cp35m-linux_armv6l.whl#sha256=822538c1598af9814465b2d57bd13f4a72f3084489090e3ad84abb3b9b7e5cc8 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,570 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp35-cp35m-linux_armv7l.whl#sha256=1f1f6f20aec143dc81cdc6ea8fb982878908d6be7fb215138f52a317af39b007 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,570 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp35-cp35m-linux_armv6l.whl#sha256=1f1f6f20aec143dc81cdc6ea8fb982878908d6be7fb215138f52a317af39b007 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,571 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp34-cp34m-linux_armv6l.whl#sha256=8b007f54c76d032f142f66ce3f52ab28ecbfe04b90140f1c094c7ee27a8efc20 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,571 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,572 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp34-cp34m-linux_armv7l.whl#sha256=9f13d6f9766fa718aab7a502acbeab90b9d973cd6104099d296c2123e17df4c8 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,572 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2-cp35-cp35m-linux_armv6l.whl#sha256=3fd464df4ebf726c766df1e7259bf9ed27efbd15b054fea9ff61317c1642bdff (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,572 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2-cp35-cp35m-linux_armv7l.whl#sha256=3fd464df4ebf726c766df1e7259bf9ed27efbd15b054fea9ff61317c1642bdff (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,572 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp34-cp34m-linux_armv6l.whl#sha256=130adc0c1b0f703615373fe89ccad779c842d4f817d9eee51cb4d7f1d583fb66 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,573 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp34-cp34m-linux_armv7l.whl#sha256=130adc0c1b0f703615373fe89ccad779c842d4f817d9eee51cb4d7f1d583fb66 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,573 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv7l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,573 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv6l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,573 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp35-cp35m-linux_armv7l.whl#sha256=9e42cacee2c0d3d6262960825be47e53245b36b9176166d7a0c8b34793ab3e4c (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,574 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp35-cp35m-linux_armv6l.whl#sha256=9e42cacee2c0d3d6262960825be47e53245b36b9176166d7a0c8b34793ab3e4c (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,574 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp34-cp34m-linux_armv6l.whl#sha256=caa6a1fe172960233e539844a6ec94ff5f730450b8e5d75546ed95e72093d251 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,574 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp34-cp34m-linux_armv7l.whl#sha256=caa6a1fe172960233e539844a6ec94ff5f730450b8e5d75546ed95e72093d251 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,574 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.10.0-cp35-cp35m-linux_armv6l.whl#sha256=430e1e1aac92b57c6061b2b035d1ce4a896772fdaecc3a7a6c79d20636998060 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,575 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.10.0-cp35-cp35m-linux_armv7l.whl#sha256=430e1e1aac92b57c6061b2b035d1ce4a896772fdaecc3a7a6c79d20636998060 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,575 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv6l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,575 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv7l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,575 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp34-cp34m-linux_armv6l.whl#sha256=6d5642b4b9d4406ee1c1a1e6707988f7e1e1eb95175d6e696db12cc33239bdbc (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,576 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp34-cp34m-linux_armv7l.whl#sha256=6d5642b4b9d4406ee1c1a1e6707988f7e1e1eb95175d6e696db12cc33239bdbc (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,576 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp34-cp34m-linux_armv6l.whl#sha256=91ff3cf00dd79a8388f4cc57b59b16e6b526c4162d6f76e880cfb98f9861d70d (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,576 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp34-cp34m-linux_armv7l.whl#sha256=91ff3cf00dd79a8388f4cc57b59b16e6b526c4162d6f76e880cfb98f9861d70d (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,576 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp35-cp35m-linux_armv7l.whl#sha256=a80a0b5409d947fd714eee1f6d5e417d80c81116ea054ad449f66cfffe7faef9 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,577 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp35-cp35m-linux_armv6l.whl#sha256=a80a0b5409d947fd714eee1f6d5e417d80c81116ea054ad449f66cfffe7faef9 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,577 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp35-cp35m-linux_armv6l.whl#sha256=c720ae8dd1d59c930e40bd060397fa5a19b3ee23f5bf285b6691799ea1585c6f (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,577 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp35-cp35m-linux_armv7l.whl#sha256=c720ae8dd1d59c930e40bd060397fa5a19b3ee23f5bf285b6691799ea1585c6f (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,577 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp34-cp34m-linux_armv6l.whl#sha256=92f79453d075cab8b9c95cc0a346d4190c95f9648f1edb66ed894e5fb1fae0b3 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,577 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp34-cp34m-linux_armv7l.whl#sha256=92f79453d075cab8b9c95cc0a346d4190c95f9648f1edb66ed894e5fb1fae0b3 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,578 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv6l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,578 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv7l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,578 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv6l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,578 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv7l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,579 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv7l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,579 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv6l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,579 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp34-cp34m-linux_armv6l.whl#sha256=eb027c4d0ca3fe3db175bb40d240b0006948161df1f6aee9bb37026023ed6ad1 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,579 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp34-cp34m-linux_armv7l.whl#sha256=eb027c4d0ca3fe3db175bb40d240b0006948161df1f6aee9bb37026023ed6ad1 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,579 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp35-cp35m-linux_armv6l.whl#sha256=95e7e97fc794ef3999eb115ee35e1b90e7599c0c4664e53509edbd95970b0253 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,579 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp35-cp35m-linux_armv7l.whl#sha256=95e7e97fc794ef3999eb115ee35e1b90e7599c0c4664e53509edbd95970b0253 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,580 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp34-cp34m-linux_armv6l.whl#sha256=339bad8ad3b9679676c129c90dec0e50726b9718bb1cb947865efbc0aed518c0 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,580 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp34-cp34m-linux_armv7l.whl#sha256=339bad8ad3b9679676c129c90dec0e50726b9718bb1cb947865efbc0aed518c0 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,580 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv6l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,580 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv7l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,580 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv6l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,581 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv7l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,581 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv6l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,581 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv7l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,581 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv7l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,581 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv6l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,582 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv7l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,582 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv6l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,582 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv6l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,582 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv7l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,582 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv7l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,583 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv6l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,583 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv6l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,583 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv7l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,583 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv7l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,583 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv6l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,583 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv6l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,584 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv7l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,584 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv6l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,584 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv7l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,584 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv6l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,584 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv7l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,585 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv6l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,585 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv7l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,585 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv6l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,585 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv7l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/) 2023-04-10T06:27:37,585 Skipping link: not a file: https://www.piwheels.org/simple/pysam/ 2023-04-10T06:27:37,586 Skipping link: not a file: https://pypi.org/simple/pysam/ 2023-04-10T06:27:37,609 Given no hashes to check 1 links for project 'pysam': discarding no candidates 2023-04-10T06:27:37,627 Collecting pysam==0.21.0 2023-04-10T06:27:37,638 Created temporary directory: /tmp/pip-unpack-qeqqtdml 2023-04-10T06:27:37,688 Downloading pysam-0.21.0.tar.gz (4.1 MB) 2023-04-10T06:27:40,180 Added pysam==0.21.0 from https://files.pythonhosted.org/packages/16/1c/a4999d93d6fd7791349f0822e1674b39971fe30d3b99638209ae6de3dfc7/pysam-0.21.0.tar.gz to build tracker '/tmp/pip-build-tracker-_sn90u7n' 2023-04-10T06:27:40,186 Created temporary directory: /tmp/pip-build-env-4y_0dkdx 2023-04-10T06:27:40,197 Installing build dependencies: started 2023-04-10T06:27:40,198 Running command pip subprocess to install build dependencies 2023-04-10T06:27:41,462 Using pip 23.0.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-04-10T06:27:42,097 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-04-10T06:27:42,123 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-04-10T06:27:43,894 Collecting setuptools>=59.0 2023-04-10T06:27:44,195 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.6.1-py3-none-any.whl (1.1 MB) 2023-04-10T06:27:44,529 Collecting wheel 2023-04-10T06:27:44,564 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-04-10T06:27:46,883 Collecting Cython<3.0,>=0.29.30 2023-04-10T06:27:47,416 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.34-cp39-cp39-linux_armv7l.whl (5.0 MB) 2023-04-10T06:27:49,889 Installing collected packages: wheel, setuptools, Cython 2023-04-10T06:27:50,128 Creating /tmp/pip-build-env-4y_0dkdx/overlay/bin 2023-04-10T06:27:50,131 changing mode of /tmp/pip-build-env-4y_0dkdx/overlay/bin/wheel to 755 2023-04-10T06:27:55,854 changing mode of /tmp/pip-build-env-4y_0dkdx/overlay/bin/cygdb to 755 2023-04-10T06:27:55,856 changing mode of /tmp/pip-build-env-4y_0dkdx/overlay/bin/cython to 755 2023-04-10T06:27:55,858 changing mode of /tmp/pip-build-env-4y_0dkdx/overlay/bin/cythonize to 755 2023-04-10T06:27:55,882 Successfully installed Cython-0.29.34 setuptools-67.6.1 wheel-0.40.0 2023-04-10T06:27:56,433 Installing build dependencies: finished with status 'done' 2023-04-10T06:27:56,439 Getting requirements to build wheel: started 2023-04-10T06:27:56,440 Running command Getting requirements to build wheel 2023-04-10T06:27:57,188 # pysam: cython is available - using cythonize if necessary 2023-04-10T06:27:57,189 # pysam: htslib mode is shared 2023-04-10T06:27:57,189 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2023-04-10T06:27:57,189 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc -pthread 2023-04-10T06:27:57,189 # pysam: (sysconfig) CFLAGS=-Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-04-10T06:27:57,190 # pysam: (sysconfig) LDFLAGS= -Wl,-z,relro -g -fwrapv -O2 2023-04-10T06:27:57,597 checking for gcc... arm-linux-gnueabihf-gcc -pthread 2023-04-10T06:27:57,936 checking whether the C compiler works... yes 2023-04-10T06:27:57,938 checking for C compiler default output file name... a.out 2023-04-10T06:27:58,185 checking for suffix of executables... 2023-04-10T06:27:58,407 checking whether we are cross compiling... no 2023-04-10T06:27:58,530 checking for suffix of object files... o 2023-04-10T06:27:58,626 checking whether we are using the GNU C compiler... yes 2023-04-10T06:27:58,716 checking whether arm-linux-gnueabihf-gcc -pthread accepts -g... yes 2023-04-10T06:27:58,856 checking for arm-linux-gnueabihf-gcc -pthread option to accept ISO C89... none needed 2023-04-10T06:27:58,859 checking for ranlib... ranlib 2023-04-10T06:27:58,870 checking for grep that handles long lines and -e... /usr/bin/grep 2023-04-10T06:27:58,997 checking for C compiler warning flags... unknown 2023-04-10T06:27:59,005 configure: Default CFLAGS_ARM/X86: -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-04-10T06:27:59,457 checking whether C compiler accepts -mssse3 -mpopcnt -msse4.1... no 2023-04-10T06:28:00,231 checking whether C compiler accepts -mavx2... no 2023-04-10T06:28:00,492 checking whether C compiler accepts -mavx512f... no 2023-04-10T06:28:01,882 checking whether C compiler supports ARM Neon... no 2023-04-10T06:28:01,922 checking for pkg-config... /usr/bin/pkg-config 2023-04-10T06:28:01,934 checking pkg-config is at least version 0.9.0... yes 2023-04-10T06:28:01,938 checking for special C compiler options needed for large files... no 2023-04-10T06:28:02,692 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-04-10T06:28:02,710 checking shared library type for unknown-Linux... plain .so 2023-04-10T06:28:02,955 checking whether the linker supports versioned symbols... no 2023-04-10T06:28:03,146 checking whether the compiler accepts -fvisibility=hidden... yes 2023-04-10T06:28:03,379 checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -pthread -E 2023-04-10T06:28:03,828 checking for egrep... /usr/bin/grep -E 2023-04-10T06:28:04,407 checking for ANSI C header files... yes 2023-04-10T06:28:04,548 checking for sys/types.h... yes 2023-04-10T06:28:04,720 checking for sys/stat.h... yes 2023-04-10T06:28:04,938 checking for stdlib.h... yes 2023-04-10T06:28:05,102 checking for string.h... yes 2023-04-10T06:28:05,266 checking for memory.h... yes 2023-04-10T06:28:05,433 checking for strings.h... yes 2023-04-10T06:28:05,605 checking for inttypes.h... yes 2023-04-10T06:28:05,839 checking for stdint.h... yes 2023-04-10T06:28:06,016 checking for unistd.h... yes 2023-04-10T06:28:06,046 checking for stdlib.h... (cached) yes 2023-04-10T06:28:06,075 checking for unistd.h... (cached) yes 2023-04-10T06:28:06,298 checking for sys/param.h... yes 2023-04-10T06:28:06,523 checking for getpagesize... yes 2023-04-10T06:28:06,897 checking for working mmap... yes 2023-04-10T06:28:07,113 checking for gmtime_r... yes 2023-04-10T06:28:07,359 checking for fsync... yes 2023-04-10T06:28:07,608 checking for drand48... yes 2023-04-10T06:28:07,873 checking for srand48_deterministic... no 2023-04-10T06:28:08,140 checking whether fdatasync is declared... yes 2023-04-10T06:28:08,428 checking for fdatasync... yes 2023-04-10T06:28:08,952 checking for library containing log... -lm 2023-04-10T06:28:09,075 checking for zlib.h... yes 2023-04-10T06:28:09,360 checking for inflate in -lz... yes 2023-04-10T06:28:09,568 checking for library containing recv... none required 2023-04-10T06:28:09,723 checking for bzlib.h... yes 2023-04-10T06:28:09,958 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-04-10T06:28:10,416 checking for lzma.h... yes 2023-04-10T06:28:10,672 checking for lzma_easy_buffer_encode in -llzma... yes 2023-04-10T06:28:10,679 checking whether htscodecs files are present... yes 2023-04-10T06:28:10,776 checking for libdeflate.h... yes 2023-04-10T06:28:11,026 checking for libdeflate_deflate_compress in -ldeflate... yes 2023-04-10T06:28:11,313 checking for curl/curl.h... yes 2023-04-10T06:28:11,792 checking for curl_easy_pause in -lcurl... yes 2023-04-10T06:28:12,129 checking for CCHmac... no 2023-04-10T06:28:12,814 checking for library containing HMAC... -lcrypto 2023-04-10T06:28:13,021 checking for library containing regcomp... none required 2023-04-10T06:28:13,164 checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes 2023-04-10T06:28:13,242 configure: creating ./config.status 2023-04-10T06:28:14,062 config.status: creating config.mk 2023-04-10T06:28:14,143 config.status: creating htslib.pc.tmp 2023-04-10T06:28:14,226 config.status: creating config.h 2023-04-10T06:28:14,279 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-04-10T06:28:14,525 make: Warning: File 'config.mk' has modification time 1.5 s in the future 2023-04-10T06:28:14,597 make: warning: Clock skew detected. Your build may be incomplete. 2023-04-10T06:28:14,979 # pysam: htslib configure options: --enable-libcurl 2023-04-10T06:28:14,980 # pysam: htslib_config HTS_CFLAGS_AVX2= 2023-04-10T06:28:14,980 # pysam: htslib_config HTS_CFLAGS_AVX512= 2023-04-10T06:28:14,980 # pysam: htslib_config HTS_CFLAGS_SSE4= 2023-04-10T06:28:14,980 # pysam: htslib_config HTS_HAVE_NEON= 2023-04-10T06:28:14,980 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-04-10T06:28:14,980 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2023-04-10T06:28:14,981 # pysam: htslib_config PLATFORM=default 2023-04-10T06:28:14,981 # pysam: config_option: ENABLE_GCS=1 2023-04-10T06:28:14,981 # pysam: config_option: ENABLE_PLUGINS=0 2023-04-10T06:28:14,981 # pysam: config_option: ENABLE_S3=1 2023-04-10T06:28:14,981 # pysam: config_option: HAVE_COMMONCRYPTO=0 2023-04-10T06:28:14,981 # pysam: config_option: HAVE_HMAC=1 2023-04-10T06:28:14,981 # pysam: config_option: HAVE_LIBBZ2=1 2023-04-10T06:28:14,981 # pysam: config_option: HAVE_LIBCURL=1 2023-04-10T06:28:14,982 # pysam: config_option: HAVE_LIBDEFLATE=1 2023-04-10T06:28:14,982 # pysam: config_option: HAVE_LIBLZMA=1 2023-04-10T06:28:14,982 # pysam: config_option: HAVE_MMAP=1 2023-04-10T06:28:14,982 running egg_info 2023-04-10T06:28:14,985 writing pysam.egg-info/PKG-INFO 2023-04-10T06:28:14,988 writing dependency_links to pysam.egg-info/dependency_links.txt 2023-04-10T06:28:14,990 writing requirements to pysam.egg-info/requires.txt 2023-04-10T06:28:14,992 writing top-level names to pysam.egg-info/top_level.txt 2023-04-10T06:28:15,046 reading manifest file 'pysam.egg-info/SOURCES.txt' 2023-04-10T06:28:15,075 reading manifest template 'MANIFEST.in' 2023-04-10T06:28:15,077 warning: no files found matching 'KNOWN_BUGS' 2023-04-10T06:28:15,077 warning: no files found matching 'THANKS' 2023-04-10T06:28:15,087 no previously-included directories found matching 'tests/' 2023-04-10T06:28:15,219 adding license file 'COPYING' 2023-04-10T06:28:15,219 adding license file 'AUTHORS' 2023-04-10T06:28:15,247 writing manifest file 'pysam.egg-info/SOURCES.txt' 2023-04-10T06:28:15,356 Getting requirements to build wheel: finished with status 'done' 2023-04-10T06:28:15,367 Created temporary directory: /tmp/pip-modern-metadata-2loop7ic 2023-04-10T06:28:15,370 Preparing metadata (pyproject.toml): started 2023-04-10T06:28:15,371 Running command Preparing metadata (pyproject.toml) 2023-04-10T06:28:16,076 # pysam: cython is available - using cythonize if necessary 2023-04-10T06:28:16,077 # pysam: htslib mode is shared 2023-04-10T06:28:16,077 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2023-04-10T06:28:16,077 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc -pthread 2023-04-10T06:28:16,077 # pysam: (sysconfig) CFLAGS=-Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-04-10T06:28:16,077 # pysam: (sysconfig) LDFLAGS= -Wl,-z,relro -g -fwrapv -O2 2023-04-10T06:28:16,449 checking for gcc... arm-linux-gnueabihf-gcc -pthread 2023-04-10T06:28:16,737 checking whether the C compiler works... yes 2023-04-10T06:28:16,738 checking for C compiler default output file name... a.out 2023-04-10T06:28:16,956 checking for suffix of executables... 2023-04-10T06:28:17,168 checking whether we are cross compiling... no 2023-04-10T06:28:17,271 checking for suffix of object files... o 2023-04-10T06:28:17,362 checking whether we are using the GNU C compiler... yes 2023-04-10T06:28:17,449 checking whether arm-linux-gnueabihf-gcc -pthread accepts -g... yes 2023-04-10T06:28:17,588 checking for arm-linux-gnueabihf-gcc -pthread option to accept ISO C89... none needed 2023-04-10T06:28:17,591 checking for ranlib... ranlib 2023-04-10T06:28:17,600 checking for grep that handles long lines and -e... /usr/bin/grep 2023-04-10T06:28:17,694 checking for C compiler warning flags... unknown 2023-04-10T06:28:17,703 configure: Default CFLAGS_ARM/X86: -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-04-10T06:28:18,068 checking whether C compiler accepts -mssse3 -mpopcnt -msse4.1... no 2023-04-10T06:28:18,128 checking whether C compiler accepts -mavx2... no 2023-04-10T06:28:18,264 checking whether C compiler accepts -mavx512f... no 2023-04-10T06:28:19,690 checking whether C compiler supports ARM Neon... no 2023-04-10T06:28:19,695 checking for pkg-config... /usr/bin/pkg-config 2023-04-10T06:28:19,710 checking pkg-config is at least version 0.9.0... yes 2023-04-10T06:28:19,715 checking for special C compiler options needed for large files... no 2023-04-10T06:28:20,028 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-04-10T06:28:20,045 checking shared library type for unknown-Linux... plain .so 2023-04-10T06:28:20,713 checking whether the linker supports versioned symbols... no 2023-04-10T06:28:20,983 checking whether the compiler accepts -fvisibility=hidden... yes 2023-04-10T06:28:21,474 checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -pthread -E 2023-04-10T06:28:21,725 checking for egrep... /usr/bin/grep -E 2023-04-10T06:28:22,290 checking for ANSI C header files... yes 2023-04-10T06:28:22,430 checking for sys/types.h... yes 2023-04-10T06:28:22,613 checking for sys/stat.h... yes 2023-04-10T06:28:22,820 checking for stdlib.h... yes 2023-04-10T06:28:22,984 checking for string.h... yes 2023-04-10T06:28:23,152 checking for memory.h... yes 2023-04-10T06:28:23,318 checking for strings.h... yes 2023-04-10T06:28:23,506 checking for inttypes.h... yes 2023-04-10T06:28:23,716 checking for stdint.h... yes 2023-04-10T06:28:23,895 checking for unistd.h... yes 2023-04-10T06:28:23,925 checking for stdlib.h... (cached) yes 2023-04-10T06:28:23,954 checking for unistd.h... (cached) yes 2023-04-10T06:28:24,156 checking for sys/param.h... yes 2023-04-10T06:28:24,384 checking for getpagesize... yes 2023-04-10T06:28:24,793 checking for working mmap... yes 2023-04-10T06:28:25,012 checking for gmtime_r... yes 2023-04-10T06:28:25,244 checking for fsync... yes 2023-04-10T06:28:25,507 checking for drand48... yes 2023-04-10T06:28:25,829 checking for srand48_deterministic... no 2023-04-10T06:28:26,022 checking whether fdatasync is declared... yes 2023-04-10T06:28:26,307 checking for fdatasync... yes 2023-04-10T06:28:27,155 checking for library containing log... -lm 2023-04-10T06:28:27,277 checking for zlib.h... yes 2023-04-10T06:28:27,512 checking for inflate in -lz... yes 2023-04-10T06:28:27,721 checking for library containing recv... none required 2023-04-10T06:28:27,843 checking for bzlib.h... yes 2023-04-10T06:28:28,066 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-04-10T06:28:28,186 checking for lzma.h... yes 2023-04-10T06:28:28,399 checking for lzma_easy_buffer_encode in -llzma... yes 2023-04-10T06:28:28,405 checking whether htscodecs files are present... yes 2023-04-10T06:28:28,499 checking for libdeflate.h... yes 2023-04-10T06:28:28,732 checking for libdeflate_deflate_compress in -ldeflate... yes 2023-04-10T06:28:29,111 checking for curl/curl.h... yes 2023-04-10T06:28:29,523 checking for curl_easy_pause in -lcurl... yes 2023-04-10T06:28:30,122 checking for CCHmac... no 2023-04-10T06:28:30,859 checking for library containing HMAC... -lcrypto 2023-04-10T06:28:31,066 checking for library containing regcomp... none required 2023-04-10T06:28:31,208 checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes 2023-04-10T06:28:31,286 configure: creating ./config.status 2023-04-10T06:28:31,661 config.status: creating config.mk 2023-04-10T06:28:31,712 config.status: creating htslib.pc.tmp 2023-04-10T06:28:31,783 config.status: creating config.h 2023-04-10T06:28:31,817 config.status: config.h is unchanged 2023-04-10T06:28:31,827 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-04-10T06:28:32,080 make: Warning: File 'config.mk' has modification time 1.6 s in the future 2023-04-10T06:28:32,152 make: warning: Clock skew detected. Your build may be incomplete. 2023-04-10T06:28:32,487 # pysam: htslib configure options: --enable-libcurl 2023-04-10T06:28:32,487 # pysam: htslib_config HTS_CFLAGS_AVX2= 2023-04-10T06:28:32,487 # pysam: htslib_config HTS_CFLAGS_AVX512= 2023-04-10T06:28:32,487 # pysam: htslib_config HTS_CFLAGS_SSE4= 2023-04-10T06:28:32,487 # pysam: htslib_config HTS_HAVE_NEON= 2023-04-10T06:28:32,488 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-04-10T06:28:32,488 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2023-04-10T06:28:32,488 # pysam: htslib_config PLATFORM=default 2023-04-10T06:28:32,488 # pysam: config_option: ENABLE_GCS=1 2023-04-10T06:28:32,488 # pysam: config_option: ENABLE_PLUGINS=0 2023-04-10T06:28:32,488 # pysam: config_option: ENABLE_S3=1 2023-04-10T06:28:32,489 # pysam: config_option: HAVE_COMMONCRYPTO=0 2023-04-10T06:28:32,489 # pysam: config_option: HAVE_HMAC=1 2023-04-10T06:28:32,489 # pysam: config_option: HAVE_LIBBZ2=1 2023-04-10T06:28:32,489 # pysam: config_option: HAVE_LIBCURL=1 2023-04-10T06:28:32,489 # pysam: config_option: HAVE_LIBDEFLATE=1 2023-04-10T06:28:32,489 # pysam: config_option: HAVE_LIBLZMA=1 2023-04-10T06:28:32,489 # pysam: config_option: HAVE_MMAP=1 2023-04-10T06:28:32,490 running dist_info 2023-04-10T06:28:32,494 creating /tmp/pip-modern-metadata-2loop7ic/pysam.egg-info 2023-04-10T06:28:32,499 writing /tmp/pip-modern-metadata-2loop7ic/pysam.egg-info/PKG-INFO 2023-04-10T06:28:32,502 writing dependency_links to /tmp/pip-modern-metadata-2loop7ic/pysam.egg-info/dependency_links.txt 2023-04-10T06:28:32,504 writing requirements to /tmp/pip-modern-metadata-2loop7ic/pysam.egg-info/requires.txt 2023-04-10T06:28:32,506 writing top-level names to /tmp/pip-modern-metadata-2loop7ic/pysam.egg-info/top_level.txt 2023-04-10T06:28:32,507 writing manifest file '/tmp/pip-modern-metadata-2loop7ic/pysam.egg-info/SOURCES.txt' 2023-04-10T06:28:32,588 reading manifest file '/tmp/pip-modern-metadata-2loop7ic/pysam.egg-info/SOURCES.txt' 2023-04-10T06:28:32,590 reading manifest template 'MANIFEST.in' 2023-04-10T06:28:32,592 warning: no files found matching 'KNOWN_BUGS' 2023-04-10T06:28:32,592 warning: no files found matching 'THANKS' 2023-04-10T06:28:32,604 no previously-included directories found matching 'tests/' 2023-04-10T06:28:32,748 adding license file 'COPYING' 2023-04-10T06:28:32,748 adding license file 'AUTHORS' 2023-04-10T06:28:32,770 writing manifest file '/tmp/pip-modern-metadata-2loop7ic/pysam.egg-info/SOURCES.txt' 2023-04-10T06:28:32,772 creating '/tmp/pip-modern-metadata-2loop7ic/pysam-0.21.0.dist-info' 2023-04-10T06:28:32,919 Preparing metadata (pyproject.toml): finished with status 'done' 2023-04-10T06:28:32,939 Source in /tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 has version 0.21.0, which satisfies requirement pysam==0.21.0 from https://files.pythonhosted.org/packages/16/1c/a4999d93d6fd7791349f0822e1674b39971fe30d3b99638209ae6de3dfc7/pysam-0.21.0.tar.gz 2023-04-10T06:28:32,940 Removed pysam==0.21.0 from https://files.pythonhosted.org/packages/16/1c/a4999d93d6fd7791349f0822e1674b39971fe30d3b99638209ae6de3dfc7/pysam-0.21.0.tar.gz from build tracker '/tmp/pip-build-tracker-_sn90u7n' 2023-04-10T06:28:32,947 Created temporary directory: /tmp/pip-unpack-855gkkcx 2023-04-10T06:28:32,947 Building wheels for collected packages: pysam 2023-04-10T06:28:32,952 Created temporary directory: /tmp/pip-wheel-ddak9b2s 2023-04-10T06:28:32,952 Destination directory: /tmp/pip-wheel-ddak9b2s 2023-04-10T06:28:32,955 Building wheel for pysam (pyproject.toml): started 2023-04-10T06:28:32,956 Running command Building wheel for pysam (pyproject.toml) 2023-04-10T06:28:33,654 # pysam: cython is available - using cythonize if necessary 2023-04-10T06:28:33,655 # pysam: htslib mode is shared 2023-04-10T06:28:33,655 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2023-04-10T06:28:33,655 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc -pthread 2023-04-10T06:28:33,655 # pysam: (sysconfig) CFLAGS=-Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-04-10T06:28:33,655 # pysam: (sysconfig) LDFLAGS= -Wl,-z,relro -g -fwrapv -O2 2023-04-10T06:28:34,033 checking for gcc... arm-linux-gnueabihf-gcc -pthread 2023-04-10T06:28:34,326 checking whether the C compiler works... yes 2023-04-10T06:28:34,327 checking for C compiler default output file name... a.out 2023-04-10T06:28:34,545 checking for suffix of executables... 2023-04-10T06:28:34,757 checking whether we are cross compiling... no 2023-04-10T06:28:34,858 checking for suffix of object files... o 2023-04-10T06:28:34,950 checking whether we are using the GNU C compiler... yes 2023-04-10T06:28:35,042 checking whether arm-linux-gnueabihf-gcc -pthread accepts -g... yes 2023-04-10T06:28:35,192 checking for arm-linux-gnueabihf-gcc -pthread option to accept ISO C89... none needed 2023-04-10T06:28:35,196 checking for ranlib... ranlib 2023-04-10T06:28:35,211 checking for grep that handles long lines and -e... /usr/bin/grep 2023-04-10T06:28:35,326 checking for C compiler warning flags... unknown 2023-04-10T06:28:35,336 configure: Default CFLAGS_ARM/X86: -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-04-10T06:28:35,629 checking whether C compiler accepts -mssse3 -mpopcnt -msse4.1... no 2023-04-10T06:28:35,975 checking whether C compiler accepts -mavx2... no 2023-04-10T06:28:36,240 checking whether C compiler accepts -mavx512f... no 2023-04-10T06:28:36,783 checking whether C compiler supports ARM Neon... no 2023-04-10T06:28:36,786 checking for pkg-config... /usr/bin/pkg-config 2023-04-10T06:28:36,793 checking pkg-config is at least version 0.9.0... yes 2023-04-10T06:28:36,795 checking for special C compiler options needed for large files... no 2023-04-10T06:28:37,147 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-04-10T06:28:37,164 checking shared library type for unknown-Linux... plain .so 2023-04-10T06:28:37,325 checking whether the linker supports versioned symbols... no 2023-04-10T06:28:37,514 checking whether the compiler accepts -fvisibility=hidden... yes 2023-04-10T06:28:37,867 checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -pthread -E 2023-04-10T06:28:38,118 checking for egrep... /usr/bin/grep -E 2023-04-10T06:28:38,624 checking for ANSI C header files... yes 2023-04-10T06:28:38,770 checking for sys/types.h... yes 2023-04-10T06:28:38,988 checking for sys/stat.h... yes 2023-04-10T06:28:39,148 checking for stdlib.h... yes 2023-04-10T06:28:39,313 checking for string.h... yes 2023-04-10T06:28:39,477 checking for memory.h... yes 2023-04-10T06:28:39,638 checking for strings.h... yes 2023-04-10T06:28:39,837 checking for inttypes.h... yes 2023-04-10T06:28:40,008 checking for stdint.h... yes 2023-04-10T06:28:40,189 checking for unistd.h... yes 2023-04-10T06:28:40,219 checking for stdlib.h... (cached) yes 2023-04-10T06:28:40,249 checking for unistd.h... (cached) yes 2023-04-10T06:28:40,451 checking for sys/param.h... yes 2023-04-10T06:28:40,671 checking for getpagesize... yes 2023-04-10T06:28:41,027 checking for working mmap... yes 2023-04-10T06:28:41,252 checking for gmtime_r... yes 2023-04-10T06:28:41,483 checking for fsync... yes 2023-04-10T06:28:41,710 checking for drand48... yes 2023-04-10T06:28:42,218 checking for srand48_deterministic... no 2023-04-10T06:28:42,417 checking whether fdatasync is declared... yes 2023-04-10T06:28:42,617 checking for fdatasync... yes 2023-04-10T06:28:44,797 checking for library containing log... -lm 2023-04-10T06:28:44,969 checking for zlib.h... yes 2023-04-10T06:28:45,176 checking for inflate in -lz... yes 2023-04-10T06:28:45,387 checking for library containing recv... none required 2023-04-10T06:28:45,490 checking for bzlib.h... yes 2023-04-10T06:28:45,709 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-04-10T06:28:45,875 checking for lzma.h... yes 2023-04-10T06:28:46,088 checking for lzma_easy_buffer_encode in -llzma... yes 2023-04-10T06:28:46,094 checking whether htscodecs files are present... yes 2023-04-10T06:28:46,188 checking for libdeflate.h... yes 2023-04-10T06:28:46,394 checking for libdeflate_deflate_compress in -ldeflate... yes 2023-04-10T06:28:46,557 checking for curl/curl.h... yes 2023-04-10T06:28:46,968 checking for curl_easy_pause in -lcurl... yes 2023-04-10T06:28:47,284 checking for CCHmac... no 2023-04-10T06:28:47,950 checking for library containing HMAC... -lcrypto 2023-04-10T06:28:48,158 checking for library containing regcomp... none required 2023-04-10T06:28:48,301 checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes 2023-04-10T06:28:48,380 configure: creating ./config.status 2023-04-10T06:28:48,756 config.status: creating config.mk 2023-04-10T06:28:48,808 config.status: creating htslib.pc.tmp 2023-04-10T06:28:48,865 config.status: creating config.h 2023-04-10T06:28:48,887 config.status: config.h is unchanged 2023-04-10T06:28:48,897 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-04-10T06:28:49,140 make: Warning: File 'config.mk' has modification time 1.6 s in the future 2023-04-10T06:28:49,207 make: warning: Clock skew detected. Your build may be incomplete. 2023-04-10T06:28:49,511 # pysam: htslib configure options: --enable-libcurl 2023-04-10T06:28:49,511 # pysam: htslib_config HTS_CFLAGS_AVX2= 2023-04-10T06:28:49,511 # pysam: htslib_config HTS_CFLAGS_AVX512= 2023-04-10T06:28:49,511 # pysam: htslib_config HTS_CFLAGS_SSE4= 2023-04-10T06:28:49,512 # pysam: htslib_config HTS_HAVE_NEON= 2023-04-10T06:28:49,512 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-04-10T06:28:49,512 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2023-04-10T06:28:49,512 # pysam: htslib_config PLATFORM=default 2023-04-10T06:28:49,512 # pysam: config_option: ENABLE_GCS=1 2023-04-10T06:28:49,512 # pysam: config_option: ENABLE_PLUGINS=0 2023-04-10T06:28:49,512 # pysam: config_option: ENABLE_S3=1 2023-04-10T06:28:49,513 # pysam: config_option: HAVE_COMMONCRYPTO=0 2023-04-10T06:28:49,513 # pysam: config_option: HAVE_HMAC=1 2023-04-10T06:28:49,513 # pysam: config_option: HAVE_LIBBZ2=1 2023-04-10T06:28:49,513 # pysam: config_option: HAVE_LIBCURL=1 2023-04-10T06:28:49,513 # pysam: config_option: HAVE_LIBDEFLATE=1 2023-04-10T06:28:49,513 # pysam: config_option: HAVE_LIBLZMA=1 2023-04-10T06:28:49,513 # pysam: config_option: HAVE_MMAP=1 2023-04-10T06:28:49,513 running bdist_wheel 2023-04-10T06:28:49,521 running build 2023-04-10T06:28:49,521 running build_py 2023-04-10T06:28:49,528 creating build 2023-04-10T06:28:49,529 creating build/lib.linux-armv7l-cpython-39 2023-04-10T06:28:49,530 creating build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,531 copying pysam/samtools.py -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,534 copying pysam/config.py -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,535 copying pysam/version.py -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,537 copying pysam/Pileup.py -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,540 copying pysam/utils.py -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,542 copying pysam/bcftools.py -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,544 copying pysam/__init__.py -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,546 creating build/lib.linux-armv7l-cpython-39/pysam/include 2023-04-10T06:28:49,547 copying pysam/include/__init__.py -> build/lib.linux-armv7l-cpython-39/pysam/include 2023-04-10T06:28:49,552 running egg_info 2023-04-10T06:28:49,563 writing pysam.egg-info/PKG-INFO 2023-04-10T06:28:49,564 writing dependency_links to pysam.egg-info/dependency_links.txt 2023-04-10T06:28:49,566 writing requirements to pysam.egg-info/requires.txt 2023-04-10T06:28:49,567 writing top-level names to pysam.egg-info/top_level.txt 2023-04-10T06:28:49,638 reading manifest file 'pysam.egg-info/SOURCES.txt' 2023-04-10T06:28:49,684 reading manifest template 'MANIFEST.in' 2023-04-10T06:28:49,685 warning: no files found matching 'KNOWN_BUGS' 2023-04-10T06:28:49,685 warning: no files found matching 'THANKS' 2023-04-10T06:28:49,695 no previously-included directories found matching 'tests/' 2023-04-10T06:28:49,824 adding license file 'COPYING' 2023-04-10T06:28:49,824 adding license file 'AUTHORS' 2023-04-10T06:28:49,854 writing manifest file 'pysam.egg-info/SOURCES.txt' 2023-04-10T06:28:49,862 /tmp/pip-build-env-4y_0dkdx/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pysam.include.htslib.cram' as data is deprecated, please list it in `packages`. 2023-04-10T06:28:49,862 !! 2023-04-10T06:28:49,862 ############################ 2023-04-10T06:28:49,862 # Package would be ignored # 2023-04-10T06:28:49,863 ############################ 2023-04-10T06:28:49,863 Python recognizes 'pysam.include.htslib.cram' as an importable package, 2023-04-10T06:28:49,863 but it is not listed in the `packages` configuration of setuptools. 2023-04-10T06:28:49,863 'pysam.include.htslib.cram' has been automatically added to the distribution only 2023-04-10T06:28:49,863 because it may contain data files, but this behavior is likely to change 2023-04-10T06:28:49,863 in future versions of setuptools (and therefore is considered deprecated). 2023-04-10T06:28:49,863 Please make sure that 'pysam.include.htslib.cram' is included as a package by using 2023-04-10T06:28:49,864 the `packages` configuration field or the proper discovery methods 2023-04-10T06:28:49,864 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-10T06:28:49,864 instead of `find_packages(...)`/`find:`). 2023-04-10T06:28:49,864 You can read more about "package discovery" and "data files" on setuptools 2023-04-10T06:28:49,864 documentation page. 2023-04-10T06:28:49,865 !! 2023-04-10T06:28:49,865 check.warn(importable) 2023-04-10T06:28:49,865 /tmp/pip-build-env-4y_0dkdx/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pysam.include.htslib.htscodecs.htscodecs' as data is deprecated, please list it in `packages`. 2023-04-10T06:28:49,865 !! 2023-04-10T06:28:49,865 ############################ 2023-04-10T06:28:49,866 # Package would be ignored # 2023-04-10T06:28:49,866 ############################ 2023-04-10T06:28:49,866 Python recognizes 'pysam.include.htslib.htscodecs.htscodecs' as an importable package, 2023-04-10T06:28:49,866 but it is not listed in the `packages` configuration of setuptools. 2023-04-10T06:28:49,866 'pysam.include.htslib.htscodecs.htscodecs' has been automatically added to the distribution only 2023-04-10T06:28:49,866 because it may contain data files, but this behavior is likely to change 2023-04-10T06:28:49,866 in future versions of setuptools (and therefore is considered deprecated). 2023-04-10T06:28:49,867 Please make sure that 'pysam.include.htslib.htscodecs.htscodecs' is included as a package by using 2023-04-10T06:28:49,867 the `packages` configuration field or the proper discovery methods 2023-04-10T06:28:49,867 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-10T06:28:49,867 instead of `find_packages(...)`/`find:`). 2023-04-10T06:28:49,867 You can read more about "package discovery" and "data files" on setuptools 2023-04-10T06:28:49,867 documentation page. 2023-04-10T06:28:49,868 !! 2023-04-10T06:28:49,868 check.warn(importable) 2023-04-10T06:28:49,868 /tmp/pip-build-env-4y_0dkdx/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pysam.include.htslib.m4' as data is deprecated, please list it in `packages`. 2023-04-10T06:28:49,868 !! 2023-04-10T06:28:49,869 ############################ 2023-04-10T06:28:49,869 # Package would be ignored # 2023-04-10T06:28:49,869 ############################ 2023-04-10T06:28:49,869 Python recognizes 'pysam.include.htslib.m4' as an importable package, 2023-04-10T06:28:49,869 but it is not listed in the `packages` configuration of setuptools. 2023-04-10T06:28:49,869 'pysam.include.htslib.m4' has been automatically added to the distribution only 2023-04-10T06:28:49,869 because it may contain data files, but this behavior is likely to change 2023-04-10T06:28:49,869 in future versions of setuptools (and therefore is considered deprecated). 2023-04-10T06:28:49,870 Please make sure that 'pysam.include.htslib.m4' is included as a package by using 2023-04-10T06:28:49,870 the `packages` configuration field or the proper discovery methods 2023-04-10T06:28:49,870 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-10T06:28:49,870 instead of `find_packages(...)`/`find:`). 2023-04-10T06:28:49,870 You can read more about "package discovery" and "data files" on setuptools 2023-04-10T06:28:49,870 documentation page. 2023-04-10T06:28:49,871 !! 2023-04-10T06:28:49,871 check.warn(importable) 2023-04-10T06:28:49,871 /tmp/pip-build-env-4y_0dkdx/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pysam.include.htslib.os' as data is deprecated, please list it in `packages`. 2023-04-10T06:28:49,871 !! 2023-04-10T06:28:49,871 ############################ 2023-04-10T06:28:49,872 # Package would be ignored # 2023-04-10T06:28:49,872 ############################ 2023-04-10T06:28:49,872 Python recognizes 'pysam.include.htslib.os' as an importable package, 2023-04-10T06:28:49,872 but it is not listed in the `packages` configuration of setuptools. 2023-04-10T06:28:49,872 'pysam.include.htslib.os' has been automatically added to the distribution only 2023-04-10T06:28:49,872 because it may contain data files, but this behavior is likely to change 2023-04-10T06:28:49,872 in future versions of setuptools (and therefore is considered deprecated). 2023-04-10T06:28:49,873 Please make sure that 'pysam.include.htslib.os' is included as a package by using 2023-04-10T06:28:49,873 the `packages` configuration field or the proper discovery methods 2023-04-10T06:28:49,873 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-10T06:28:49,873 instead of `find_packages(...)`/`find:`). 2023-04-10T06:28:49,873 You can read more about "package discovery" and "data files" on setuptools 2023-04-10T06:28:49,873 documentation page. 2023-04-10T06:28:49,874 !! 2023-04-10T06:28:49,874 check.warn(importable) 2023-04-10T06:28:49,874 /tmp/pip-build-env-4y_0dkdx/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pysam.include.samtools.lz4' as data is deprecated, please list it in `packages`. 2023-04-10T06:28:49,874 !! 2023-04-10T06:28:49,875 ############################ 2023-04-10T06:28:49,875 # Package would be ignored # 2023-04-10T06:28:49,875 ############################ 2023-04-10T06:28:49,875 Python recognizes 'pysam.include.samtools.lz4' as an importable package, 2023-04-10T06:28:49,875 but it is not listed in the `packages` configuration of setuptools. 2023-04-10T06:28:49,875 'pysam.include.samtools.lz4' has been automatically added to the distribution only 2023-04-10T06:28:49,875 because it may contain data files, but this behavior is likely to change 2023-04-10T06:28:49,876 in future versions of setuptools (and therefore is considered deprecated). 2023-04-10T06:28:49,876 Please make sure that 'pysam.include.samtools.lz4' is included as a package by using 2023-04-10T06:28:49,876 the `packages` configuration field or the proper discovery methods 2023-04-10T06:28:49,876 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-10T06:28:49,876 instead of `find_packages(...)`/`find:`). 2023-04-10T06:28:49,876 You can read more about "package discovery" and "data files" on setuptools 2023-04-10T06:28:49,876 documentation page. 2023-04-10T06:28:49,877 !! 2023-04-10T06:28:49,877 check.warn(importable) 2023-04-10T06:28:49,913 copying pysam/cbcftools_util.h -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,915 copying pysam/csamtools_util.h -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,918 copying pysam/htslib_util.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,920 copying pysam/htslib_util.h -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,922 copying pysam/libcalignedsegment.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,987 copying pysam/libcalignedsegment.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,990 copying pysam/libcalignedsegment.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,993 copying pysam/libcalignedsegment.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:49,999 copying pysam/libcalignmentfile.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,051 copying pysam/libcalignmentfile.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,054 copying pysam/libcalignmentfile.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,057 copying pysam/libcalignmentfile.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,063 copying pysam/libcbcf.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,142 copying pysam/libcbcf.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,145 copying pysam/libcbcf.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,148 copying pysam/libcbcf.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,154 copying pysam/libcbcftools.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,160 copying pysam/libcbcftools.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,162 copying pysam/libcbcftools.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,165 copying pysam/libcbcftools.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,167 copying pysam/libcbgzf.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,178 copying pysam/libcbgzf.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,181 copying pysam/libcbgzf.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,184 copying pysam/libcfaidx.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,201 copying pysam/libcfaidx.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,204 copying pysam/libcfaidx.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,207 copying pysam/libcfaidx.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,210 copying pysam/libchtslib.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,227 copying pysam/libchtslib.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,232 copying pysam/libchtslib.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,235 copying pysam/libchtslib.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,238 copying pysam/libcsamfile.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,247 copying pysam/libcsamfile.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,249 copying pysam/libcsamfile.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,251 copying pysam/libcsamfile.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,254 copying pysam/libcsamtools.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,259 copying pysam/libcsamtools.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,262 copying pysam/libcsamtools.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,264 copying pysam/libcsamtools.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,266 copying pysam/libctabix.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,292 copying pysam/libctabix.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,294 copying pysam/libctabix.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,297 copying pysam/libctabix.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,301 copying pysam/libctabixproxies.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,326 copying pysam/libctabixproxies.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,328 copying pysam/libctabixproxies.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,330 copying pysam/libctabixproxies.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,334 copying pysam/libcutils.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,348 copying pysam/libcutils.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,350 copying pysam/libcutils.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,352 copying pysam/libcutils.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,355 copying pysam/libcvcf.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,403 copying pysam/libcvcf.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,406 copying pysam/libcvcf.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,407 copying pysam/libcvcf.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,412 copying pysam/py.typed -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,413 copying pysam/pysam_stream.h -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,416 copying pysam/pysam_util.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,418 copying pysam/pysam_util.h -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,420 copying pysam/version.h -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,422 copying pysam/version.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-04-10T06:28:50,424 creating build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,425 copying samtools/LICENSE -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,427 copying samtools/README -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,430 copying samtools/amplicon_stats.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,434 copying samtools/amplicon_stats.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,439 copying samtools/bam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,442 copying samtools/bam.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,445 copying samtools/bam.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,447 copying samtools/bam2depth.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,451 copying samtools/bam2depth.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,454 copying samtools/bam_addrprg.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,457 copying samtools/bam_addrprg.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,460 copying samtools/bam_ampliconclip.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,464 copying samtools/bam_ampliconclip.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,468 copying samtools/bam_ampliconclip.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,470 copying samtools/bam_aux.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,473 copying samtools/bam_aux.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,475 copying samtools/bam_cat.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,478 copying samtools/bam_cat.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,481 copying samtools/bam_color.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,484 copying samtools/bam_color.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,487 copying samtools/bam_consensus.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,493 copying samtools/bam_consensus.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,498 copying samtools/bam_fastq.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,501 copying samtools/bam_fastq.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,505 copying samtools/bam_flags.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,507 copying samtools/bam_flags.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,510 copying samtools/bam_import.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,513 copying samtools/bam_import.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,516 copying samtools/bam_index.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,519 copying samtools/bam_index.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,522 copying samtools/bam_lpileup.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,525 copying samtools/bam_lpileup.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,528 copying samtools/bam_lpileup.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,530 copying samtools/bam_markdup.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,534 copying samtools/bam_markdup.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,539 copying samtools/bam_mate.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,542 copying samtools/bam_mate.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,546 copying samtools/bam_md.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,549 copying samtools/bam_md.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,552 copying samtools/bam_plbuf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,554 copying samtools/bam_plbuf.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,556 copying samtools/bam_plbuf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,558 copying samtools/bam_plcmd.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,562 copying samtools/bam_plcmd.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,566 copying samtools/bam_quickcheck.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,569 copying samtools/bam_quickcheck.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,571 copying samtools/bam_reheader.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,574 copying samtools/bam_reheader.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,578 copying samtools/bam_rmdup.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,581 copying samtools/bam_rmdup.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,584 copying samtools/bam_rmdupse.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,586 copying samtools/bam_rmdupse.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,589 copying samtools/bam_samples.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,592 copying samtools/bam_samples.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,595 copying samtools/bam_sort.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,600 copying samtools/bam_sort.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,606 copying samtools/bam_split.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,609 copying samtools/bam_split.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,613 copying samtools/bam_stat.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,616 copying samtools/bam_stat.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,619 copying samtools/bamshuf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,622 copying samtools/bamshuf.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,625 copying samtools/bamtk.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,628 copying samtools/bamtk.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,632 copying samtools/bedcov.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,634 copying samtools/bedcov.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,637 copying samtools/bedidx.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,640 copying samtools/bedidx.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,644 copying samtools/bedidx.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,646 copying samtools/consensus_pileup.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,649 copying samtools/consensus_pileup.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,652 copying samtools/consensus_pileup.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,655 copying samtools/coverage.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,659 copying samtools/coverage.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,662 copying samtools/cram_size.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,666 copying samtools/cram_size.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,669 copying samtools/cut_target.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,672 copying samtools/cut_target.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,674 copying samtools/dict.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,677 copying samtools/dict.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,680 copying samtools/faidx.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,683 copying samtools/faidx.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,687 copying samtools/padding.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,691 copying samtools/padding.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,694 copying samtools/phase.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,698 copying samtools/phase.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,701 copying samtools/reference.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,705 copying samtools/reference.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,710 copying samtools/reset.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,714 copying samtools/reset.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,719 copying samtools/sam_opts.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,722 copying samtools/sam_opts.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,726 copying samtools/sam_opts.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,730 copying samtools/sam_utils.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,733 copying samtools/sam_utils.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,736 copying samtools/sam_utils.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,739 copying samtools/sam_view.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,746 copying samtools/sam_view.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,753 copying samtools/sample.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,756 copying samtools/sample.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,760 copying samtools/sample.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,763 copying samtools/samtools.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,766 copying samtools/samtools.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,769 copying samtools/samtools.pysam.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,772 copying samtools/splaysort.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,777 copying samtools/stats.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,786 copying samtools/stats.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,797 copying samtools/stats_isize.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,800 copying samtools/stats_isize.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,804 copying samtools/stats_isize.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,806 copying samtools/tmp_file.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,809 copying samtools/tmp_file.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,812 copying samtools/tmp_file.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,814 copying samtools/version.sh -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,816 creating build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4 2023-04-10T06:28:50,817 copying samtools/lz4/LICENSE -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4 2023-04-10T06:28:50,820 copying samtools/lz4/lz4.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4 2023-04-10T06:28:50,825 copying samtools/lz4/lz4.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4 2023-04-10T06:28:50,830 copying samtools/lz4/lz4.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4 2023-04-10T06:28:50,833 copying samtools/config.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-04-10T06:28:50,835 creating build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,836 copying bcftools/HMM.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,839 copying bcftools/HMM.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,842 copying bcftools/HMM.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,844 copying bcftools/LICENSE -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,848 copying bcftools/README -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,850 copying bcftools/abuf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,854 copying bcftools/abuf.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,857 copying bcftools/abuf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,859 copying bcftools/bam2bcf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,863 copying bcftools/bam2bcf.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,867 copying bcftools/bam2bcf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,870 copying bcftools/bam2bcf_iaux.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,873 copying bcftools/bam2bcf_iaux.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,876 copying bcftools/bam2bcf_indel.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,880 copying bcftools/bam2bcf_indel.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,883 copying bcftools/bam_sample.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,886 copying bcftools/bam_sample.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,889 copying bcftools/bam_sample.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,891 copying bcftools/bcftools.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,894 copying bcftools/bcftools.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,896 copying bcftools/bcftools.pysam.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,898 copying bcftools/bin.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,900 copying bcftools/bin.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,903 copying bcftools/bin.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,905 copying bcftools/call.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,907 copying bcftools/ccall.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,910 copying bcftools/ccall.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,913 copying bcftools/cigar_state.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,916 copying bcftools/cols.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,918 copying bcftools/cols.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,920 copying bcftools/cols.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,923 copying bcftools/consensus.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,926 copying bcftools/consensus.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,930 copying bcftools/convert.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,934 copying bcftools/convert.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,938 copying bcftools/convert.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,941 copying bcftools/csq.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,947 copying bcftools/csq.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,954 copying bcftools/dbuf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,956 copying bcftools/dist.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,959 copying bcftools/dist.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,961 copying bcftools/dist.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,963 copying bcftools/em.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,966 copying bcftools/em.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,969 copying bcftools/extsort.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,972 copying bcftools/extsort.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,974 copying bcftools/extsort.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,977 copying bcftools/filter.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,983 copying bcftools/filter.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,988 copying bcftools/filter.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,990 copying bcftools/gvcf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,993 copying bcftools/gvcf.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,996 copying bcftools/gvcf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:50,998 copying bcftools/hclust.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,001 copying bcftools/hclust.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,004 copying bcftools/hclust.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,006 copying bcftools/hex.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,009 copying bcftools/khash_str2str.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,011 copying bcftools/kheap.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,014 copying bcftools/kmin.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,016 copying bcftools/kmin.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,019 copying bcftools/kmin.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,021 copying bcftools/main.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,023 copying bcftools/main.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,026 copying bcftools/mcall.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,030 copying bcftools/mcall.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,034 copying bcftools/mpileup.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,038 copying bcftools/mpileup.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,043 copying bcftools/mw.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,047 copying bcftools/ploidy.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,050 copying bcftools/ploidy.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,053 copying bcftools/ploidy.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,055 copying bcftools/prob1.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,058 copying bcftools/prob1.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,061 copying bcftools/prob1.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,063 copying bcftools/rbuf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,066 copying bcftools/read_consensus.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,069 copying bcftools/read_consensus.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,072 copying bcftools/read_consensus.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,074 copying bcftools/regidx.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,077 copying bcftools/regidx.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,080 copying bcftools/regidx.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,083 copying bcftools/reheader.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,086 copying bcftools/reheader.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,089 copying bcftools/smpl_ilist.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,092 copying bcftools/smpl_ilist.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,094 copying bcftools/smpl_ilist.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,097 copying bcftools/str_finder.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,099 copying bcftools/str_finder.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,102 copying bcftools/str_finder.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,104 copying bcftools/tabix.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,107 copying bcftools/tabix.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,110 copying bcftools/tsv2vcf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,112 copying bcftools/tsv2vcf.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,114 copying bcftools/tsv2vcf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,116 copying bcftools/utlist.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,120 copying bcftools/variantkey.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,123 copying bcftools/vcfannotate.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,130 copying bcftools/vcfannotate.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,136 copying bcftools/vcfbuf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,140 copying bcftools/vcfbuf.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,143 copying bcftools/vcfbuf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,146 copying bcftools/vcfcall.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,150 copying bcftools/vcfcall.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,154 copying bcftools/vcfcnv.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,159 copying bcftools/vcfcnv.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,164 copying bcftools/vcfconcat.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,168 copying bcftools/vcfconcat.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,172 copying bcftools/vcfconvert.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,177 copying bcftools/vcfconvert.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,183 copying bcftools/vcffilter.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,186 copying bcftools/vcffilter.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,191 copying bcftools/vcfgtcheck.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,195 copying bcftools/vcfgtcheck.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,199 copying bcftools/vcfhead.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,202 copying bcftools/vcfhead.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,205 copying bcftools/vcfindex.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,208 copying bcftools/vcfindex.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,211 copying bcftools/vcfisec.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,214 copying bcftools/vcfisec.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,217 copying bcftools/vcfmerge.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,222 copying bcftools/vcfmerge.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,228 copying bcftools/vcfnorm.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,255 copying bcftools/vcfnorm.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,260 copying bcftools/vcfplugin.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,263 copying bcftools/vcfplugin.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,267 copying bcftools/vcfquery.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,270 copying bcftools/vcfquery.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,273 copying bcftools/vcfroh.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,277 copying bcftools/vcfroh.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,281 copying bcftools/vcfsom.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,284 copying bcftools/vcfsom.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,288 copying bcftools/vcfsort.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,290 copying bcftools/vcfsort.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,293 copying bcftools/vcfstats.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,297 copying bcftools/vcfstats.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,302 copying bcftools/vcfview.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,305 copying bcftools/vcfview.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,309 copying bcftools/vcmp.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,311 copying bcftools/vcmp.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,314 copying bcftools/vcmp.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,316 copying bcftools/version.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,319 copying bcftools/version.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,321 copying bcftools/version.sh -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,323 copying bcftools/config.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-04-10T06:28:51,325 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,326 copying htslib/LICENSE -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,329 copying htslib/Makefile -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,332 copying htslib/README -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,335 copying htslib/bcf_sr_sort.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,338 copying htslib/bcf_sr_sort.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,340 copying htslib/bgzf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,345 copying htslib/bgzip.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,348 copying htslib/builddir_vars.mk.in -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,351 copying htslib/config.h.in -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,353 copying htslib/config.mk.in -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,356 copying htslib/configure -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,362 copying htslib/configure.ac -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,365 copying htslib/errmod.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,368 copying htslib/faidx.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,372 copying htslib/header.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,376 copying htslib/header.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,379 copying htslib/hfile.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,383 copying htslib/hfile_gcs.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,385 copying htslib/hfile_internal.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,388 copying htslib/hfile_libcurl.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,392 copying htslib/hfile_s3.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,395 copying htslib/hfile_s3_write.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,399 copying htslib/hts.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,404 copying htslib/hts_expr.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,408 copying htslib/hts_internal.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,410 copying htslib/hts_os.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,413 copying htslib/hts_time_funcs.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,415 copying htslib/htscodecs_bundled.mk -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,418 copying htslib/htscodecs_external.mk -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,420 copying htslib/htsfile.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,423 copying htslib/htslib.mk -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,426 copying htslib/htslib.pc.in -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,428 copying htslib/htslib_vars.mk -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,430 copying htslib/kfunc.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,433 copying htslib/kstring.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,436 copying htslib/md5.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,439 copying htslib/multipart.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,442 copying htslib/plugin.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,445 copying htslib/probaln.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,448 copying htslib/realn.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,451 copying htslib/regidx.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,454 copying htslib/region.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,457 copying htslib/sam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,464 copying htslib/sam_internal.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,466 copying htslib/synced_bcf_reader.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,470 copying htslib/tabix.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,474 copying htslib/tbx.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,477 copying htslib/textutils.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,479 copying htslib/textutils_internal.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,482 copying htslib/thread_pool.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,486 copying htslib/thread_pool_internal.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,489 copying htslib/vcf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,495 copying htslib/vcf_sweep.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,498 copying htslib/vcfutils.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,501 copying htslib/version.sh -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,503 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,504 copying htslib/cram/cram.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,507 copying htslib/cram/cram_codecs.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,514 copying htslib/cram/cram_codecs.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,518 copying htslib/cram/cram_decode.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,527 copying htslib/cram/cram_decode.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,530 copying htslib/cram/cram_encode.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,539 copying htslib/cram/cram_encode.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,542 copying htslib/cram/cram_external.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,547 copying htslib/cram/cram_index.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,551 copying htslib/cram/cram_index.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,554 copying htslib/cram/cram_io.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,564 copying htslib/cram/cram_io.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,568 copying htslib/cram/cram_samtools.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,571 copying htslib/cram/cram_stats.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,575 copying htslib/cram/cram_stats.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,578 copying htslib/cram/cram_structs.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,582 copying htslib/cram/mFILE.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,586 copying htslib/cram/mFILE.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,590 copying htslib/cram/misc.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,593 copying htslib/cram/open_trace_file.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,597 copying htslib/cram/open_trace_file.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,600 copying htslib/cram/os.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,604 copying htslib/cram/pooled_alloc.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,608 copying htslib/cram/pooled_alloc.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,611 copying htslib/cram/string_alloc.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,615 copying htslib/cram/string_alloc.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-04-10T06:28:51,618 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs 2023-04-10T06:28:51,618 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,620 copying htslib/htscodecs/htscodecs/arith_dynamic.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,625 copying htslib/htscodecs/htscodecs/arith_dynamic.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,628 copying htslib/htscodecs/htscodecs/c_range_coder.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,631 copying htslib/htscodecs/htscodecs/c_simple_model.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,634 copying htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,639 copying htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,643 copying htslib/htscodecs/htscodecs/htscodecs.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,646 copying htslib/htscodecs/htscodecs/htscodecs.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,649 copying htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,652 copying htslib/htscodecs/htscodecs/pack.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,655 copying htslib/htscodecs/htscodecs/pack.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,658 copying htslib/htscodecs/htscodecs/permute.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,662 copying htslib/htscodecs/htscodecs/pooled_alloc.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,665 copying htslib/htscodecs/htscodecs/rANS_byte.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,669 copying htslib/htscodecs/htscodecs/rANS_static.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,674 copying htslib/htscodecs/htscodecs/rANS_static.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,677 copying htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,681 copying htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,685 copying htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,689 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,695 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,699 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,705 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,711 copying htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,714 copying htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,718 copying htslib/htscodecs/htscodecs/rANS_word.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,721 copying htslib/htscodecs/htscodecs/rle.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,724 copying htslib/htscodecs/htscodecs/rle.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,726 copying htslib/htscodecs/htscodecs/tokenise_name3.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,730 copying htslib/htscodecs/htscodecs/tokenise_name3.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,732 copying htslib/htscodecs/htscodecs/utils.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,735 copying htslib/htscodecs/htscodecs/utils.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,738 copying htslib/htscodecs/htscodecs/varint.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,741 copying htslib/htscodecs/htscodecs/varint2.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,744 copying htslib/htscodecs/htscodecs/version.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:28:51,746 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4 2023-04-10T06:28:51,747 copying htslib/m4/ax_check_compile_flag.m4 -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4 2023-04-10T06:28:51,750 copying htslib/m4/hts_hide_dynamic_syms.m4 -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4 2023-04-10T06:28:51,752 copying htslib/m4/hts_prog_cc_warnings.m4 -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4 2023-04-10T06:28:51,755 copying htslib/m4/pkg.m4 -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4 2023-04-10T06:28:51,758 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib/os 2023-04-10T06:28:51,759 copying htslib/os/lzma_stub.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/os 2023-04-10T06:28:51,762 copying htslib/os/rand.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/os 2023-04-10T06:28:51,764 copying htslib/config.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-04-10T06:28:51,767 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,768 copying htslib/htslib/bgzf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,771 copying htslib/htslib/cram.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,775 copying htslib/htslib/faidx.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,778 copying htslib/htslib/hfile.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,781 copying htslib/htslib/hts.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,785 copying htslib/htslib/hts_defs.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,787 copying htslib/htslib/hts_endian.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,790 copying htslib/htslib/hts_expr.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,793 copying htslib/htslib/hts_log.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,795 copying htslib/htslib/hts_os.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,798 copying htslib/htslib/kbitset.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,801 copying htslib/htslib/kfunc.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,803 copying htslib/htslib/khash.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,806 copying htslib/htslib/khash_str2int.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,809 copying htslib/htslib/klist.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,811 copying htslib/htslib/knetfile.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,814 copying htslib/htslib/kroundup.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,816 copying htslib/htslib/kseq.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,819 copying htslib/htslib/ksort.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,822 copying htslib/htslib/kstring.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,825 copying htslib/htslib/regidx.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,828 copying htslib/htslib/sam.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,833 copying htslib/htslib/synced_bcf_reader.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,836 copying htslib/htslib/tbx.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,839 copying htslib/htslib/thread_pool.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,842 copying htslib/htslib/vcf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,846 copying htslib/htslib/vcf_sweep.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,849 copying htslib/htslib/vcfutils.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-04-10T06:28:51,857 running build_ext 2023-04-10T06:28:51,931 skipping 'pysam/libchtslib.c' Cython extension (up-to-date) 2023-04-10T06:28:51,932 skipping 'pysam/libcsamtools.c' Cython extension (up-to-date) 2023-04-10T06:28:51,932 skipping 'pysam/libcbcftools.c' Cython extension (up-to-date) 2023-04-10T06:28:51,933 skipping 'pysam/libcutils.c' Cython extension (up-to-date) 2023-04-10T06:28:51,933 skipping 'pysam/libcalignmentfile.c' Cython extension (up-to-date) 2023-04-10T06:28:51,933 skipping 'pysam/libcsamfile.c' Cython extension (up-to-date) 2023-04-10T06:28:51,933 skipping 'pysam/libcalignedsegment.c' Cython extension (up-to-date) 2023-04-10T06:28:51,934 skipping 'pysam/libctabix.c' Cython extension (up-to-date) 2023-04-10T06:28:51,934 skipping 'pysam/libcfaidx.c' Cython extension (up-to-date) 2023-04-10T06:28:51,934 skipping 'pysam/libcbcf.c' Cython extension (up-to-date) 2023-04-10T06:28:51,935 skipping 'pysam/libcbgzf.c' Cython extension (up-to-date) 2023-04-10T06:28:51,935 skipping 'pysam/libctabixproxies.c' Cython extension (up-to-date) 2023-04-10T06:28:51,936 skipping 'pysam/libcvcf.c' Cython extension (up-to-date) 2023-04-10T06:28:51,936 creating htslib/config_vars.h for 'pysam.libchtslib' extension 2023-04-10T06:28:51,937 building 'libhts.a' 2023-04-10T06:28:52,003 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kfunc.o kfunc.c 2023-04-10T06:28:52,435 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kstring.o kstring.c 2023-04-10T06:28:53,172 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bcf_sr_sort.o bcf_sr_sort.c 2023-04-10T06:28:55,226 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bgzf.o bgzf.c 2023-04-10T06:28:58,093 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o errmod.o errmod.c 2023-04-10T06:28:58,678 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o faidx.o faidx.c 2023-04-10T06:29:00,356 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o header.o header.c 2023-04-10T06:29:04,185 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile.o hfile.c 2023-04-10T06:29:05,630 echo '#define HTS_VERSION_TEXT "1.17"' > version.h 2023-04-10T06:29:05,638 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts.o hts.c 2023-04-10T06:29:12,934 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_expr.o hts_expr.c 2023-04-10T06:29:14,566 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_os.o hts_os.c 2023-04-10T06:29:14,687 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o md5.o md5.c 2023-04-10T06:29:15,252 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o multipart.o multipart.c 2023-04-10T06:29:15,758 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o probaln.o probaln.c 2023-04-10T06:29:16,414 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o realn.o realn.c 2023-04-10T06:29:17,241 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o regidx.o regidx.c 2023-04-10T06:29:18,532 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o region.o region.c 2023-04-10T06:29:19,099 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam.o sam.c 2023-04-10T06:29:30,910 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o synced_bcf_reader.o synced_bcf_reader.c 2023-04-10T06:29:33,243 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf_sweep.o vcf_sweep.c 2023-04-10T06:29:33,576 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o tbx.o tbx.c 2023-04-10T06:29:34,331 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o textutils.o textutils.c 2023-04-10T06:29:35,177 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o thread_pool.o thread_pool.c 2023-04-10T06:29:35,993 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf.o vcf.c 2023-04-10T06:29:48,452 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcfutils.o vcfutils.c 2023-04-10T06:29:51,233 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_codecs.o cram/cram_codecs.c 2023-04-10T06:29:56,126 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_decode.o cram/cram_decode.c 2023-04-10T06:30:01,801 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_encode.o cram/cram_encode.c 2023-04-10T06:30:09,112 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_external.o cram/cram_external.c 2023-04-10T06:30:10,106 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_index.o cram/cram_index.c 2023-04-10T06:30:11,282 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_io.o cram/cram_io.c 2023-04-10T06:30:17,928 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_stats.o cram/cram_stats.c 2023-04-10T06:30:18,570 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/mFILE.o cram/mFILE.c 2023-04-10T06:30:19,162 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/open_trace_file.o cram/open_trace_file.c 2023-04-10T06:30:19,670 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/pooled_alloc.o cram/pooled_alloc.c 2023-04-10T06:30:19,853 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/string_alloc.o cram/string_alloc.c 2023-04-10T06:30:20,050 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c 2023-04-10T06:30:23,397 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c 2023-04-10T06:30:26,934 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c 2023-04-10T06:30:27,013 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c 2023-04-10T06:30:27,670 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c 2023-04-10T06:30:31,924 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static32x16pr.c 2023-04-10T06:30:34,754 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c 2023-04-10T06:30:36,555 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c 2023-04-10T06:30:36,990 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c 2023-04-10T06:30:39,519 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/utils.o htscodecs/htscodecs/utils.c 2023-04-10T06:30:39,789 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_libcurl.o hfile_libcurl.c 2023-04-10T06:30:41,960 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_gcs.o hfile_gcs.c 2023-04-10T06:30:42,439 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_s3.o hfile_s3.c 2023-04-10T06:30:45,326 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_s3_write.o hfile_s3_write.c 2023-04-10T06:30:46,567 ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-04-10T06:30:46,786 ranlib libhts.a 2023-04-10T06:30:47,081 building 'pysam.libchtslib' extension 2023-04-10T06:30:47,082 creating build/temp.linux-armv7l-cpython-39 2023-04-10T06:30:47,083 creating build/temp.linux-armv7l-cpython-39/pysam 2023-04-10T06:30:47,084 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c pysam/htslib_util.c -o build/temp.linux-armv7l-cpython-39/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:30:47,403 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c pysam/libchtslib.c -o build/temp.linux-armv7l-cpython-39/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:00,547 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/htslib_util.o build/temp.linux-armv7l-cpython-39/pysam/libchtslib.o htslib/kfunc.o htslib/kstring.o htslib/bcf_sr_sort.o htslib/bgzf.o htslib/errmod.o htslib/faidx.o htslib/header.o htslib/hfile.o htslib/hts.o htslib/hts_expr.o htslib/hts_os.o htslib/md5.o htslib/multipart.o htslib/probaln.o htslib/realn.o htslib/regidx.o htslib/region.o htslib/sam.o htslib/synced_bcf_reader.o htslib/vcf_sweep.o htslib/tbx.o htslib/textutils.o htslib/thread_pool.o htslib/vcf.o htslib/vcfutils.o htslib/cram/cram_codecs.o htslib/cram/cram_decode.o htslib/cram/cram_encode.o htslib/cram/cram_external.o htslib/cram/cram_index.o htslib/cram/cram_io.o htslib/cram/cram_stats.o htslib/cram/mFILE.o htslib/cram/open_trace_file.o htslib/cram/pooled_alloc.o htslib/cram/string_alloc.o htslib/htscodecs/htscodecs/arith_dynamic.o htslib/htscodecs/htscodecs/fqzcomp_qual.o htslib/htscodecs/htscodecs/htscodecs.o htslib/htscodecs/htscodecs/pack.o htslib/htscodecs/htscodecs/rANS_static4x16pr.o htslib/htscodecs/htscodecs/rANS_static32x16pr.o htslib/htscodecs/htscodecs/rANS_static.o htslib/htscodecs/htscodecs/rle.o htslib/htscodecs/htscodecs/tokenise_name3.o htslib/htscodecs/htscodecs/utils.o htslib/hfile_libcurl.o htslib/hfile_gcs.o htslib/hfile_s3.o htslib/hfile_s3_write.o -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -o build/lib.linux-armv7l-cpython-39/pysam/libchtslib.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-04-10T06:31:01,296 creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension 2023-04-10T06:31:01,297 building 'pysam.libcsamtools' extension 2023-04-10T06:31:01,300 creating build/temp.linux-armv7l-cpython-39/samtools 2023-04-10T06:31:01,302 creating build/temp.linux-armv7l-cpython-39/samtools/lz4 2023-04-10T06:31:01,303 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c pysam/libcsamtools.c -o build/temp.linux-armv7l-cpython-39/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:02,132 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:05,782 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:06,300 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:08,399 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:09,087 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:10,807 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:11,045 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:11,767 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_color.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:12,051 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:14,739 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:15,955 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:16,197 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_import.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:17,101 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_index.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:17,530 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:18,088 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:22,115 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:23,344 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_md.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:24,295 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:24,517 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:26,658 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:27,002 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:27,738 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:28,998 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:30,069 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:30,818 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:38,702 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_split.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:39,876 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:40,647 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:42,658 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bamtk.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:43,134 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bedcov.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:44,116 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/bedidx.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:45,638 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:46,231 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/coverage.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:47,244 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/cram_size.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:47,436 samtools/cram_size.c.pysam.c: In function ‘cram_size’: 2023-04-10T06:31:47,437 samtools/cram_size.c.pysam.c:563:20: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 2023-04-10T06:31:47,437 563 | fprintf(outfp, "Total file size %18"PRId64"\n", end); 2023-04-10T06:31:47,437 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ 2023-04-10T06:31:47,437 | | 2023-04-10T06:31:47,437 | off_t {aka long int} 2023-04-10T06:31:47,437 In file included from /tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib/htslib/hts.h:33, 2023-04-10T06:31:47,438 from /tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib/htslib/sam.h:33, 2023-04-10T06:31:47,438 from samtools/cram_size.c.pysam.c:39: 2023-04-10T06:31:47,438 /usr/include/inttypes.h:57:34: note: format string is defined here 2023-04-10T06:31:47,438 57 | # define PRId64 __PRI64_PREFIX "d" 2023-04-10T06:31:47,438 samtools/cram_size.c.pysam.c:564:20: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 2023-04-10T06:31:47,438 564 | fprintf(outfp, "Format overhead size %18"PRId64"\n", end - tot_size); 2023-04-10T06:31:47,438 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~ 2023-04-10T06:31:47,439 | | 2023-04-10T06:31:47,439 | off_t {aka long int} 2023-04-10T06:31:47,439 In file included from /tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib/htslib/hts.h:33, 2023-04-10T06:31:47,439 from /tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib/htslib/sam.h:33, 2023-04-10T06:31:47,439 from samtools/cram_size.c.pysam.c:39: 2023-04-10T06:31:47,439 /usr/include/inttypes.h:57:34: note: format string is defined here 2023-04-10T06:31:47,439 57 | # define PRId64 __PRI64_PREFIX "d" 2023-04-10T06:31:48,197 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/cut_target.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:48,823 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/dict.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:49,754 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/faidx.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:50,334 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/lz4/lz4.c -o build/temp.linux-armv7l-cpython-39/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:55,537 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/padding.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:56,720 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/phase.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:31:59,354 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/reference.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:00,243 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/reset.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:01,193 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:01,498 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:01,958 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/sam_view.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:04,650 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/sample.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:05,364 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/samtools.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:05,577 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/stats.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:10,044 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:10,608 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:11,047 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcsamtools.o build/temp.linux-armv7l-cpython-39/samtools/amplicon_stats.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam2depth.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_addrprg.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_aux.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_cat.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_color.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_consensus.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_fastq.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_flags.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_import.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_index.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_lpileup.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_markdup.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_mate.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_md.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_plbuf.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_plcmd.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_quickcheck.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_reheader.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_rmdup.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_rmdupse.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_samples.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_sort.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_split.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_stat.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bamshuf.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bamtk.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bedcov.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bedidx.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/consensus_pileup.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/coverage.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/cram_size.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/cut_target.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/dict.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/faidx.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/lz4/lz4.o build/temp.linux-armv7l-cpython-39/samtools/padding.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/phase.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/reference.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/reset.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/sam_opts.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/sam_utils.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/sam_view.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/sample.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/samtools.pysam.o build/temp.linux-armv7l-cpython-39/samtools/stats.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/stats_isize.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/tmp_file.c.pysam.o -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-04-10T06:32:11,542 building 'pysam.libcbcftools' extension 2023-04-10T06:32:11,545 creating build/temp.linux-armv7l-cpython-39/bcftools 2023-04-10T06:32:11,548 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/HMM.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:12,429 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/abuf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:14,902 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:17,066 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:18,495 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:20,587 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:22,278 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/bcftools.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:22,492 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/bin.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:22,803 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/ccall.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:23,487 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/cols.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:23,717 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:25,896 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/convert.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:31,138 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/csq.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:38,972 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/dist.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:39,232 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/em.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:39,747 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/extsort.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:40,236 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/filter.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:53,402 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:53,932 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/hclust.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:54,502 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/kmin.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:54,924 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/main.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:55,247 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/mcall.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:32:58,565 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:00,884 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:01,799 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/prob1.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:03,185 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:04,809 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/regidx.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:06,018 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:08,793 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:09,210 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:09,599 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/tabix.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:09,994 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:10,350 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:18,537 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:19,674 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:22,032 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:23,928 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:26,298 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:29,493 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:30,914 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:33,572 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:33,915 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:34,517 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:36,089 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:37,943 bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’: 2023-04-10T06:33:37,944 bcftools/vcfmerge.c.pysam.c:751:34: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-04-10T06:33:37,944 751 | ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t)); // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n 2023-04-10T06:33:37,944 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-04-10T06:33:37,944 In file included from /tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib/htslib/kstring.h:30, 2023-04-10T06:33:37,945 from /tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib/htslib/hts.h:37, 2023-04-10T06:33:37,945 from /tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib/htslib/vcf.h:39, 2023-04-10T06:33:37,945 from bcftools/vcfmerge.c.pysam.c:35: 2023-04-10T06:33:37,945 /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 2023-04-10T06:33:37,945 542 | extern void *calloc (size_t __nmemb, size_t __size) 2023-04-10T06:33:37,945 | ^~~~~~ 2023-04-10T06:33:45,787 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:53,139 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:53,404 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:54,542 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:56,812 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:58,019 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:33:58,739 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:34:02,631 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:34:04,371 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:34:04,779 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c bcftools/version.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:34:05,109 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c pysam/libcbcftools.c -o build/temp.linux-armv7l-cpython-39/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:34:05,985 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/bcftools/HMM.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/abuf.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bam_sample.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bcftools.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bin.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/ccall.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/cols.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/consensus.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/convert.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/csq.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/dist.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/em.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/extsort.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/filter.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/gvcf.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/hclust.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/kmin.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/main.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/mcall.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/mpileup.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/ploidy.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/prob1.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/read_consensus.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/regidx.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/reheader.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/smpl_ilist.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/str_finder.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/tabix.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/tsv2vcf.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfannotate.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfbuf.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfcall.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfcnv.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfconcat.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfconvert.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcffilter.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfhead.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfindex.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfisec.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfmerge.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfnorm.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfplugin.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfquery.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfroh.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfsom.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfsort.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfstats.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfview.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcmp.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/version.c.pysam.o build/temp.linux-armv7l-cpython-39/pysam/libcbcftools.o -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-04-10T06:34:06,556 building 'pysam.libcutils' extension 2023-04-10T06:34:06,557 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c pysam/libcutils.c -o build/temp.linux-armv7l-cpython-39/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:34:17,184 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c pysam/pysam_util.c -o build/temp.linux-armv7l-cpython-39/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:34:17,352 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcutils.o build/temp.linux-armv7l-cpython-39/pysam/pysam_util.o -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcsamtools.cpython-39-arm-linux-gnueabihf -lcbcftools.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcutils.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-04-10T06:34:17,554 building 'pysam.libcalignmentfile' extension 2023-04-10T06:34:17,555 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c pysam/libcalignmentfile.c -o build/temp.linux-armv7l-cpython-39/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:34:59,574 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcalignmentfile.o -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-04-10T06:34:59,879 building 'pysam.libcsamfile' extension 2023-04-10T06:34:59,880 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c pysam/libcsamfile.c -o build/temp.linux-armv7l-cpython-39/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:35:02,015 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcsamfile.o -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-04-10T06:35:02,190 building 'pysam.libcalignedsegment' extension 2023-04-10T06:35:02,191 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c pysam/libcalignedsegment.c -o build/temp.linux-armv7l-cpython-39/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:35:56,399 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcalignedsegment.o -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-04-10T06:35:56,769 building 'pysam.libctabix' extension 2023-04-10T06:35:56,770 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c pysam/libctabix.c -o build/temp.linux-armv7l-cpython-39/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:36:16,426 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libctabix.o -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libctabix.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-04-10T06:36:16,655 building 'pysam.libcfaidx' extension 2023-04-10T06:36:16,656 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c pysam/libcfaidx.c -o build/temp.linux-armv7l-cpython-39/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:36:28,747 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcfaidx.o -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-04-10T06:36:28,961 building 'pysam.libcbcf' extension 2023-04-10T06:36:28,962 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c pysam/libcbcf.c -o build/temp.linux-armv7l-cpython-39/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:37:43,505 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcbcf.o -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcbcf.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-04-10T06:37:43,972 building 'pysam.libcbgzf' extension 2023-04-10T06:37:43,973 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c pysam/libcbgzf.c -o build/temp.linux-armv7l-cpython-39/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:37:49,044 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcbgzf.o -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcbgzf.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-04-10T06:37:49,231 building 'pysam.libctabixproxies' extension 2023-04-10T06:37:49,232 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c pysam/libctabixproxies.c -o build/temp.linux-armv7l-cpython-39/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:38:07,483 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libctabixproxies.o -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-04-10T06:38:07,709 building 'pysam.libcvcf' extension 2023-04-10T06:38:07,710 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/htslib -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/samtools/lz4 -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/bcftools -I/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -I/usr/include/python3.9 -c pysam/libcvcf.c -o build/temp.linux-armv7l-cpython-39/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-04-10T06:38:52,707 pysam/libcvcf.c: In function ‘__pyx_pf_5pysam_7libcvcf_3VCF_32parse_data.constprop’: 2023-04-10T06:38:52,724 pysam/libcvcf.c:25833:15: warning: ‘__pyx_v_qual’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-04-10T06:38:52,724 25833 | __pyx_t_8 = PyFloat_FromDouble(__pyx_v_qual); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 873, __pyx_L1_error) 2023-04-10T06:38:52,724 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-04-10T06:39:12,935 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcvcf.o -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9/pysam -L/tmp/pip-wheel-rc5lty05/pysam_c469c96dd7b84206a3409e5778eda0c9 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcvcf.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-04-10T06:39:13,506 installing to build/bdist.linux-armv7l/wheel 2023-04-10T06:39:13,506 running install 2023-04-10T06:39:13,533 running install_lib 2023-04-10T06:39:13,539 creating build/bdist.linux-armv7l 2023-04-10T06:39:13,539 creating build/bdist.linux-armv7l/wheel 2023-04-10T06:39:13,542 creating build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,544 copying build/lib.linux-armv7l-cpython-39/pysam/libchtslib.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,547 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,549 copying build/lib.linux-armv7l-cpython-39/pysam/libcbgzf.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,551 copying build/lib.linux-armv7l-cpython-39/pysam/cbcftools_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,553 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.c -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,561 copying build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,563 copying build/lib.linux-armv7l-cpython-39/pysam/libcutils.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,566 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,569 copying build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,571 copying build/lib.linux-armv7l-cpython-39/pysam/samtools.py -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,574 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,576 copying build/lib.linux-armv7l-cpython-39/pysam/libcvcf.c -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,618 copying build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,621 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,623 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.c -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,683 copying build/lib.linux-armv7l-cpython-39/pysam/pysam_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,685 copying build/lib.linux-armv7l-cpython-39/pysam/libcvcf.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,764 copying build/lib.linux-armv7l-cpython-39/pysam/libcbgzf.c -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,774 copying build/lib.linux-armv7l-cpython-39/pysam/libchtslib.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,776 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.c -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,840 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcf.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,843 copying build/lib.linux-armv7l-cpython-39/pysam/libchtslib.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,973 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:13,975 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:14,077 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.c -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:14,082 copying build/lib.linux-armv7l-cpython-39/pysam/libcutils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:14,099 copying build/lib.linux-armv7l-cpython-39/pysam/libcvcf.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:14,103 copying build/lib.linux-armv7l-cpython-39/pysam/libcbgzf.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:14,106 copying build/lib.linux-armv7l-cpython-39/pysam/libcutils.c -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:14,120 copying build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:14,122 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.c -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:14,129 copying build/lib.linux-armv7l-cpython-39/pysam/libctabix.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:14,159 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:14,161 copying build/lib.linux-armv7l-cpython-39/pysam/libcutils.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:14,163 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcf.c -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:14,235 copying build/lib.linux-armv7l-cpython-39/pysam/py.typed -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:14,237 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:14,239 copying build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:14,243 creating build/bdist.linux-armv7l/wheel/pysam/include 2023-04-10T06:39:14,246 creating build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,247 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_index.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,250 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/padding.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,253 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/version.sh -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,255 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_plbuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,257 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bamtk.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,260 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/tmp_file.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,263 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_lpileup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,265 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_utils.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,268 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/phase.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,271 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_color.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,273 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_view.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,277 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_index.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,280 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/padding.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,283 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_view.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,287 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/cut_target.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,290 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_stat.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,292 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/stats.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,297 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/reference.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,300 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,303 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_addrprg.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,306 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_rmdup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,308 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/coverage.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,312 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_quickcheck.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,314 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bamtk.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,317 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/consensus_pileup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,320 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_utils.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,323 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/stats_isize.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,325 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/tmp_file.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,328 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_opts.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,330 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam2depth.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,334 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/coverage.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,337 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/dict.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,339 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/phase.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,343 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_ampliconclip.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,345 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_quickcheck.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,347 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bedidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,350 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/reset.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,352 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_flags.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,354 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_ampliconclip.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,357 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bedcov.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,360 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bedidx.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,363 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_opts.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,366 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_fastq.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,369 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/stats_isize.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,371 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_stat.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,374 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/dict.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,376 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_plbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,378 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_plcmd.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,381 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_cat.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,384 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/README -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,387 creating build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-04-10T06:39:14,388 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4/lz4.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-04-10T06:39:14,391 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4/lz4.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-04-10T06:39:14,396 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-04-10T06:39:14,398 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4/lz4.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-04-10T06:39:14,401 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sample.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,404 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_consensus.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,408 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_markdup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,413 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,416 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_md.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,419 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_aux.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,421 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,423 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_rmdupse.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,425 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/stats.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,430 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_reheader.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,433 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_aux.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,435 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sample.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,438 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/tmp_file.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,440 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_samples.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,442 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_mate.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,445 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_utils.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,447 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_mate.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,451 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_reheader.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,453 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sample.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,456 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bamshuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,459 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_consensus.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,464 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_plbuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,466 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/faidx.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,469 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_md.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,471 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_plcmd.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,475 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_markdup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,480 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_color.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,483 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/stats_isize.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,485 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/consensus_pileup.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,487 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam2depth.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,491 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_sort.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,496 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_import.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,499 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/amplicon_stats.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,502 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_split.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,505 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bedcov.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,508 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/samtools.pysam.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,510 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_rmdup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,513 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/cram_size.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,516 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_import.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,519 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/samtools.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,521 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_fastq.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,524 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/samtools.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,526 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,529 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/consensus_pileup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,531 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/amplicon_stats.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,535 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/cram_size.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,538 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,540 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_lpileup.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,542 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/cut_target.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,545 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_sort.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,550 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,553 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_flags.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,556 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bamshuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,559 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_addrprg.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,562 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_split.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,565 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_samples.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,567 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_lpileup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,570 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/faidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,573 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/reference.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,575 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/reset.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,578 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_cat.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,581 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_rmdupse.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,583 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/splaysort.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,586 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bedidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,588 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_opts.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-04-10T06:39:14,594 creating build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,595 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfcall.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,599 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/dbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,601 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/version.sh -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,603 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,606 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/ploidy.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,608 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcffilter.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,612 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfindex.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,614 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam2bcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,618 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/regidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,621 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bin.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,623 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfbuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,626 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/ccall.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,629 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam2bcf_indel.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,632 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/extsort.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,634 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/convert.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,636 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfconvert.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,640 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfquery.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,643 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/abuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,646 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/main.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,649 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/read_consensus.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,651 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfview.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,654 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam2bcf_iaux.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,658 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfplugin.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,661 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/mw.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,665 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/smpl_ilist.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,668 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/kmin.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,670 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/kheap.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,672 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bcftools.pysam.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,674 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfconvert.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,678 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bin.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,680 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/tabix.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,683 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/str_finder.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,685 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/convert.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,689 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/hclust.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,692 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfannotate.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,697 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/extsort.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,700 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/regidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,703 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfnorm.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,707 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/utlist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,711 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfindex.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,713 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/main.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,716 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/variantkey.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,719 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfplugin.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,722 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfcall.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,726 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/gvcf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,728 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/ploidy.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,731 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfhead.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,733 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/reheader.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,736 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/read_consensus.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,740 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/smpl_ilist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,742 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/dist.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,744 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/prob1.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,747 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcmp.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,750 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcffilter.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,753 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam_sample.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,755 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfsort.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,757 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/kmin.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,760 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/csq.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,766 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/tabix.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,768 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfsom.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,772 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfcnv.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,776 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/prob1.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,778 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfconcat.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,782 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/regidx.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,785 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfannotate.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,793 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/ploidy.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,796 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/convert.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,801 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/str_finder.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,803 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfmerge.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,810 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,814 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/cols.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,816 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfisec.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,819 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/consensus.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,823 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/README -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,825 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/smpl_ilist.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,827 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/reheader.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,831 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/abuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,834 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfview.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,837 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/mpileup.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,841 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/HMM.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,844 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfhead.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,846 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,849 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfstats.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,854 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,857 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/mcall.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,861 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/cigar_state.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,863 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfbuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,866 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfstats.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,870 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfconcat.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,874 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/tsv2vcf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,876 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/filter.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,881 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/extsort.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,883 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam_sample.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,886 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/em.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,889 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bcftools.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,891 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfcnv.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,895 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/cols.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,897 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/version.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,899 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,901 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/prob1.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,904 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bcftools.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,906 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/gvcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,909 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/cols.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,911 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/khash_str2str.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,912 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/hclust.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,914 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/hex.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,916 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/abuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,918 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/HMM.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,921 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfsort.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,923 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/HMM.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,926 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/mpileup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,930 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/gvcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,932 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/csq.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,938 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/filter.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,944 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam2bcf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,947 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfroh.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,951 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfquery.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,953 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/filter.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,955 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/mcall.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,959 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam_sample.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,961 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,963 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfsom.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,966 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcmp.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,968 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/read_consensus.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,971 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfmerge.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,976 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfnorm.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,980 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/tsv2vcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,982 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/em.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,984 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfgtcheck.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,988 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam2bcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,990 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/tsv2vcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,992 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcmp.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,994 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/rbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,997 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bin.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:14,999 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/ccall.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:15,001 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/consensus.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:15,005 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/kmin.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:15,007 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/version.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:15,009 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfisec.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:15,012 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfroh.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:15,016 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/hclust.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:15,019 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/dist.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:15,021 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/str_finder.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:15,023 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/call.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:15,026 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/dist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-04-10T06:39:15,029 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,030 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/bcf_sr_sort.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,033 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/tbx.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,035 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/version.sh -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,037 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/plugin.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,040 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/config.mk.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,041 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/kstring.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,045 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,046 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/open_trace_file.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,049 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/os.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,051 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/open_trace_file.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,054 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_codecs.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,058 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/string_alloc.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,061 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/pooled_alloc.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,063 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/pooled_alloc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,065 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/misc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,067 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_io.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,073 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_samtools.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,075 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_codecs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,077 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/mFILE.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,080 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_decode.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,085 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_index.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,086 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/mFILE.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,089 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_structs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,092 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_encode.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,094 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_external.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,096 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/string_alloc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,098 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_decode.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,100 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,102 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_io.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,105 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_stats.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,107 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_encode.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,113 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_index.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,115 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_stats.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-04-10T06:39:15,118 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/regidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,121 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/bgzf.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,125 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/probaln.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,127 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/textutils_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,130 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/synced_bcf_reader.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,134 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/config.h.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,136 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/tabix.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,139 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/kfunc.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,142 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hfile_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,144 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/realn.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,147 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-04-10T06:39:15,148 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4/hts_prog_cc_warnings.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-04-10T06:39:15,151 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4/pkg.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-04-10T06:39:15,154 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4/ax_check_compile_flag.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-04-10T06:39:15,156 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4/hts_hide_dynamic_syms.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-04-10T06:39:15,158 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/sam.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,165 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/vcfutils.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,168 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/bcf_sr_sort.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,170 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hts_expr.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,173 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hfile_libcurl.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,177 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/vcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,183 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/thread_pool.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,187 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs_bundled.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,189 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/md5.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,192 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/README -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,194 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs_external.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,196 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hts.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,202 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hts_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,205 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/bgzip.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,208 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/region.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,210 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,212 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hfile_s3.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,216 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htsfile.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,218 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hfile.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,222 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs 2023-04-10T06:39:15,225 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,226 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/utils.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,229 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/varint2.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,232 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,234 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,238 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,240 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,243 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rle.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,245 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,247 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/pack.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,250 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,252 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,256 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,259 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,261 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,264 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_word.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,267 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/pack.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,269 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,273 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/utils.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,276 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,280 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/htscodecs.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,282 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,284 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,288 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rle.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,291 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,293 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,296 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,301 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,305 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/permute.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,307 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,311 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,317 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,319 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,324 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/varint.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,327 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/version.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,329 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/htscodecs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-04-10T06:39:15,331 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hfile_gcs.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,334 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/header.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,341 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/os 2023-04-10T06:39:15,342 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/os/rand.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/os 2023-04-10T06:39:15,344 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/os/lzma_stub.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/os 2023-04-10T06:39:15,346 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/sam_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,348 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/configure -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,360 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib_vars.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,362 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/vcf_sweep.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,364 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hts_os.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,366 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/configure.ac -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,370 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/header.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,372 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/builddir_vars.mk.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,375 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,377 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,380 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/Makefile -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,384 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/textutils.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,387 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/errmod.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,390 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hts_time_funcs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,393 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/multipart.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,397 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,397 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/kseq.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,400 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/kstring.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,403 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/klist.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,406 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/regidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,409 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/bgzf.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,411 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/thread_pool.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,414 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/khash_str2int.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,416 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/vcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,422 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/faidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,426 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/khash.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,430 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/knetfile.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,433 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/vcfutils.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,436 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts_log.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,438 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,443 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts_endian.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,447 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/sam.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,455 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/kroundup.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,458 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/vcf_sweep.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,461 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hfile.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,464 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/synced_bcf_reader.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,468 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts_defs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,471 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts_expr.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,474 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/ksort.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,478 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/cram.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,482 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts_os.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,484 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/kbitset.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,488 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/tbx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,491 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/kfunc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-04-10T06:39:15,493 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/faidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,498 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hfile_s3_write.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,502 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/thread_pool_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,505 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib.pc.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-04-10T06:39:15,507 copying build/lib.linux-armv7l-cpython-39/pysam/include/__init__.py -> build/bdist.linux-armv7l/wheel/pysam/include 2023-04-10T06:39:15,509 copying build/lib.linux-armv7l-cpython-39/pysam/libctabix.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,512 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcf.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,515 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,578 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,580 copying build/lib.linux-armv7l-cpython-39/pysam/csamtools_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,582 copying build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,610 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,612 copying build/lib.linux-armv7l-cpython-39/pysam/libchtslib.c -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,631 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,702 copying build/lib.linux-armv7l-cpython-39/pysam/htslib_util.c -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,704 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcf.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,709 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,715 copying build/lib.linux-armv7l-cpython-39/pysam/config.py -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,717 copying build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.c -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,744 copying build/lib.linux-armv7l-cpython-39/pysam/libctabix.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,747 copying build/lib.linux-armv7l-cpython-39/pysam/version.py -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,748 copying build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,750 copying build/lib.linux-armv7l-cpython-39/pysam/libcvcf.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,752 copying build/lib.linux-armv7l-cpython-39/pysam/Pileup.py -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,754 copying build/lib.linux-armv7l-cpython-39/pysam/libcvcf.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,756 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,757 copying build/lib.linux-armv7l-cpython-39/pysam/version.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,759 copying build/lib.linux-armv7l-cpython-39/pysam/htslib_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,761 copying build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.c -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,778 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,780 copying build/lib.linux-armv7l-cpython-39/pysam/libctabix.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,782 copying build/lib.linux-armv7l-cpython-39/pysam/pysam_stream.h -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,784 copying build/lib.linux-armv7l-cpython-39/pysam/libchtslib.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,789 copying build/lib.linux-armv7l-cpython-39/pysam/libcutils.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,791 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcf.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,886 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,892 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,898 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,900 copying build/lib.linux-armv7l-cpython-39/pysam/pysam_util.c -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,902 copying build/lib.linux-armv7l-cpython-39/pysam/utils.py -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,905 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,959 copying build/lib.linux-armv7l-cpython-39/pysam/bcftools.py -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,961 copying build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,995 copying build/lib.linux-armv7l-cpython-39/pysam/__init__.py -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,997 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:15,999 copying build/lib.linux-armv7l-cpython-39/pysam/libctabix.c -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:16,024 copying build/lib.linux-armv7l-cpython-39/pysam/libcbgzf.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:16,033 copying build/lib.linux-armv7l-cpython-39/pysam/version.h -> build/bdist.linux-armv7l/wheel/pysam 2023-04-10T06:39:16,035 running install_egg_info 2023-04-10T06:39:16,041 Copying pysam.egg-info to build/bdist.linux-armv7l/wheel/pysam-0.21.0-py3.9.egg-info 2023-04-10T06:39:16,056 running install_scripts 2023-04-10T06:39:16,110 creating build/bdist.linux-armv7l/wheel/pysam-0.21.0.dist-info/WHEEL 2023-04-10T06:39:16,113 creating '/tmp/pip-wheel-ddak9b2s/.tmp-9s7j9a6p/pysam-0.21.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-04-10T06:39:16,118 adding 'pysam/Pileup.py' 2023-04-10T06:39:16,120 adding 'pysam/__init__.py' 2023-04-10T06:39:16,121 adding 'pysam/bcftools.py' 2023-04-10T06:39:16,123 adding 'pysam/cbcftools_util.h' 2023-04-10T06:39:16,124 adding 'pysam/config.py' 2023-04-10T06:39:16,125 adding 'pysam/csamtools_util.h' 2023-04-10T06:39:16,127 adding 'pysam/htslib_util.c' 2023-04-10T06:39:16,128 adding 'pysam/htslib_util.h' 2023-04-10T06:39:16,318 adding 'pysam/libcalignedsegment.c' 2023-04-10T06:39:16,967 adding 'pysam/libcalignedsegment.cpython-39-arm-linux-gnueabihf.so' 2023-04-10T06:39:16,990 adding 'pysam/libcalignedsegment.pxd' 2023-04-10T06:39:16,991 adding 'pysam/libcalignedsegment.pyi' 2023-04-10T06:39:17,004 adding 'pysam/libcalignedsegment.pyx' 2023-04-10T06:39:17,141 adding 'pysam/libcalignmentfile.c' 2023-04-10T06:39:17,642 adding 'pysam/libcalignmentfile.cpython-39-arm-linux-gnueabihf.so' 2023-04-10T06:39:17,660 adding 'pysam/libcalignmentfile.pxd' 2023-04-10T06:39:17,661 adding 'pysam/libcalignmentfile.pyi' 2023-04-10T06:39:17,674 adding 'pysam/libcalignmentfile.pyx' 2023-04-10T06:39:17,912 adding 'pysam/libcbcf.c' 2023-04-10T06:39:18,748 adding 'pysam/libcbcf.cpython-39-arm-linux-gnueabihf.so' 2023-04-10T06:39:18,779 adding 'pysam/libcbcf.pxd' 2023-04-10T06:39:18,781 adding 'pysam/libcbcf.pyi' 2023-04-10T06:39:18,796 adding 'pysam/libcbcf.pyx' 2023-04-10T06:39:18,807 adding 'pysam/libcbcftools.c' 2023-04-10T06:39:19,735 adding 'pysam/libcbcftools.cpython-39-arm-linux-gnueabihf.so' 2023-04-10T06:39:19,761 adding 'pysam/libcbcftools.pxd' 2023-04-10T06:39:19,762 adding 'pysam/libcbcftools.pyi' 2023-04-10T06:39:19,763 adding 'pysam/libcbcftools.pyx' 2023-04-10T06:39:19,794 adding 'pysam/libcbgzf.c' 2023-04-10T06:39:19,871 adding 'pysam/libcbgzf.cpython-39-arm-linux-gnueabihf.so' 2023-04-10T06:39:19,875 adding 'pysam/libcbgzf.pyi' 2023-04-10T06:39:19,876 adding 'pysam/libcbgzf.pyx' 2023-04-10T06:39:19,929 adding 'pysam/libcfaidx.c' 2023-04-10T06:39:20,103 adding 'pysam/libcfaidx.cpython-39-arm-linux-gnueabihf.so' 2023-04-10T06:39:20,110 adding 'pysam/libcfaidx.pxd' 2023-04-10T06:39:20,112 adding 'pysam/libcfaidx.pyi' 2023-04-10T06:39:20,115 adding 'pysam/libcfaidx.pyx' 2023-04-10T06:39:20,172 adding 'pysam/libchtslib.c' 2023-04-10T06:39:21,394 adding 'pysam/libchtslib.cpython-39-arm-linux-gnueabihf.so' 2023-04-10T06:39:21,442 adding 'pysam/libchtslib.pxd' 2023-04-10T06:39:21,444 adding 'pysam/libchtslib.pyi' 2023-04-10T06:39:21,447 adding 'pysam/libchtslib.pyx' 2023-04-10T06:39:21,469 adding 'pysam/libcsamfile.c' 2023-04-10T06:39:21,499 adding 'pysam/libcsamfile.cpython-39-arm-linux-gnueabihf.so' 2023-04-10T06:39:21,501 adding 'pysam/libcsamfile.pxd' 2023-04-10T06:39:21,503 adding 'pysam/libcsamfile.pyi' 2023-04-10T06:39:21,504 adding 'pysam/libcsamfile.pyx' 2023-04-10T06:39:21,515 adding 'pysam/libcsamtools.c' 2023-04-10T06:39:22,143 adding 'pysam/libcsamtools.cpython-39-arm-linux-gnueabihf.so' 2023-04-10T06:39:22,161 adding 'pysam/libcsamtools.pxd' 2023-04-10T06:39:22,163 adding 'pysam/libcsamtools.pyi' 2023-04-10T06:39:22,164 adding 'pysam/libcsamtools.pyx' 2023-04-10T06:39:22,239 adding 'pysam/libctabix.c' 2023-04-10T06:39:22,489 adding 'pysam/libctabix.cpython-39-arm-linux-gnueabihf.so' 2023-04-10T06:39:22,498 adding 'pysam/libctabix.pxd' 2023-04-10T06:39:22,500 adding 'pysam/libctabix.pyi' 2023-04-10T06:39:22,505 adding 'pysam/libctabix.pyx' 2023-04-10T06:39:22,582 adding 'pysam/libctabixproxies.c' 2023-04-10T06:39:22,845 adding 'pysam/libctabixproxies.cpython-39-arm-linux-gnueabihf.so' 2023-04-10T06:39:22,855 adding 'pysam/libctabixproxies.pxd' 2023-04-10T06:39:22,856 adding 'pysam/libctabixproxies.pyi' 2023-04-10T06:39:22,860 adding 'pysam/libctabixproxies.pyx' 2023-04-10T06:39:22,903 adding 'pysam/libcutils.c' 2023-04-10T06:39:23,046 adding 'pysam/libcutils.cpython-39-arm-linux-gnueabihf.so' 2023-04-10T06:39:23,052 adding 'pysam/libcutils.pxd' 2023-04-10T06:39:23,054 adding 'pysam/libcutils.pyi' 2023-04-10T06:39:23,056 adding 'pysam/libcutils.pyx' 2023-04-10T06:39:23,191 adding 'pysam/libcvcf.c' 2023-04-10T06:39:23,772 adding 'pysam/libcvcf.cpython-39-arm-linux-gnueabihf.so' 2023-04-10T06:39:23,791 adding 'pysam/libcvcf.pxd' 2023-04-10T06:39:23,792 adding 'pysam/libcvcf.pyi' 2023-04-10T06:39:23,798 adding 'pysam/libcvcf.pyx' 2023-04-10T06:39:23,800 adding 'pysam/py.typed' 2023-04-10T06:39:23,802 adding 'pysam/pysam_stream.h' 2023-04-10T06:39:23,803 adding 'pysam/pysam_util.c' 2023-04-10T06:39:23,804 adding 'pysam/pysam_util.h' 2023-04-10T06:39:23,806 adding 'pysam/samtools.py' 2023-04-10T06:39:23,808 adding 'pysam/utils.py' 2023-04-10T06:39:23,809 adding 'pysam/version.h' 2023-04-10T06:39:23,811 adding 'pysam/version.py' 2023-04-10T06:39:23,812 adding 'pysam/version.pyi' 2023-04-10T06:39:23,814 adding 'pysam/include/__init__.py' 2023-04-10T06:39:23,819 adding 'pysam/include/bcftools/HMM.c' 2023-04-10T06:39:23,822 adding 'pysam/include/bcftools/HMM.c.pysam.c' 2023-04-10T06:39:23,824 adding 'pysam/include/bcftools/HMM.h' 2023-04-10T06:39:23,831 adding 'pysam/include/bcftools/LICENSE' 2023-04-10T06:39:23,832 adding 'pysam/include/bcftools/README' 2023-04-10T06:39:23,836 adding 'pysam/include/bcftools/abuf.c' 2023-04-10T06:39:23,840 adding 'pysam/include/bcftools/abuf.c.pysam.c' 2023-04-10T06:39:23,842 adding 'pysam/include/bcftools/abuf.h' 2023-04-10T06:39:23,848 adding 'pysam/include/bcftools/bam2bcf.c' 2023-04-10T06:39:23,854 adding 'pysam/include/bcftools/bam2bcf.c.pysam.c' 2023-04-10T06:39:23,856 adding 'pysam/include/bcftools/bam2bcf.h' 2023-04-10T06:39:23,860 adding 'pysam/include/bcftools/bam2bcf_iaux.c' 2023-04-10T06:39:23,865 adding 'pysam/include/bcftools/bam2bcf_iaux.c.pysam.c' 2023-04-10T06:39:23,870 adding 'pysam/include/bcftools/bam2bcf_indel.c' 2023-04-10T06:39:23,874 adding 'pysam/include/bcftools/bam2bcf_indel.c.pysam.c' 2023-04-10T06:39:23,877 adding 'pysam/include/bcftools/bam_sample.c' 2023-04-10T06:39:23,879 adding 'pysam/include/bcftools/bam_sample.c.pysam.c' 2023-04-10T06:39:23,881 adding 'pysam/include/bcftools/bam_sample.h' 2023-04-10T06:39:23,882 adding 'pysam/include/bcftools/bcftools.h' 2023-04-10T06:39:23,884 adding 'pysam/include/bcftools/bcftools.pysam.c' 2023-04-10T06:39:23,885 adding 'pysam/include/bcftools/bcftools.pysam.h' 2023-04-10T06:39:23,887 adding 'pysam/include/bcftools/bin.c' 2023-04-10T06:39:23,889 adding 'pysam/include/bcftools/bin.c.pysam.c' 2023-04-10T06:39:23,890 adding 'pysam/include/bcftools/bin.h' 2023-04-10T06:39:23,892 adding 'pysam/include/bcftools/call.h' 2023-04-10T06:39:23,894 adding 'pysam/include/bcftools/ccall.c' 2023-04-10T06:39:23,897 adding 'pysam/include/bcftools/ccall.c.pysam.c' 2023-04-10T06:39:23,898 adding 'pysam/include/bcftools/cigar_state.h' 2023-04-10T06:39:23,900 adding 'pysam/include/bcftools/cols.c' 2023-04-10T06:39:23,901 adding 'pysam/include/bcftools/cols.c.pysam.c' 2023-04-10T06:39:23,903 adding 'pysam/include/bcftools/cols.h' 2023-04-10T06:39:23,904 adding 'pysam/include/bcftools/config.h' 2023-04-10T06:39:23,910 adding 'pysam/include/bcftools/consensus.c' 2023-04-10T06:39:23,916 adding 'pysam/include/bcftools/consensus.c.pysam.c' 2023-04-10T06:39:23,922 adding 'pysam/include/bcftools/convert.c' 2023-04-10T06:39:23,929 adding 'pysam/include/bcftools/convert.c.pysam.c' 2023-04-10T06:39:23,931 adding 'pysam/include/bcftools/convert.h' 2023-04-10T06:39:23,950 adding 'pysam/include/bcftools/csq.c' 2023-04-10T06:39:23,971 adding 'pysam/include/bcftools/csq.c.pysam.c' 2023-04-10T06:39:23,974 adding 'pysam/include/bcftools/dbuf.h' 2023-04-10T06:39:23,975 adding 'pysam/include/bcftools/dist.c' 2023-04-10T06:39:23,977 adding 'pysam/include/bcftools/dist.c.pysam.c' 2023-04-10T06:39:23,978 adding 'pysam/include/bcftools/dist.h' 2023-04-10T06:39:23,980 adding 'pysam/include/bcftools/em.c' 2023-04-10T06:39:23,982 adding 'pysam/include/bcftools/em.c.pysam.c' 2023-04-10T06:39:23,984 adding 'pysam/include/bcftools/extsort.c' 2023-04-10T06:39:23,986 adding 'pysam/include/bcftools/extsort.c.pysam.c' 2023-04-10T06:39:23,988 adding 'pysam/include/bcftools/extsort.h' 2023-04-10T06:39:24,001 adding 'pysam/include/bcftools/filter.c' 2023-04-10T06:39:24,016 adding 'pysam/include/bcftools/filter.c.pysam.c' 2023-04-10T06:39:24,018 adding 'pysam/include/bcftools/filter.h' 2023-04-10T06:39:24,020 adding 'pysam/include/bcftools/gvcf.c' 2023-04-10T06:39:24,022 adding 'pysam/include/bcftools/gvcf.c.pysam.c' 2023-04-10T06:39:24,024 adding 'pysam/include/bcftools/gvcf.h' 2023-04-10T06:39:24,026 adding 'pysam/include/bcftools/hclust.c' 2023-04-10T06:39:24,028 adding 'pysam/include/bcftools/hclust.c.pysam.c' 2023-04-10T06:39:24,030 adding 'pysam/include/bcftools/hclust.h' 2023-04-10T06:39:24,031 adding 'pysam/include/bcftools/hex.h' 2023-04-10T06:39:24,032 adding 'pysam/include/bcftools/khash_str2str.h' 2023-04-10T06:39:24,034 adding 'pysam/include/bcftools/kheap.h' 2023-04-10T06:39:24,036 adding 'pysam/include/bcftools/kmin.c' 2023-04-10T06:39:24,038 adding 'pysam/include/bcftools/kmin.c.pysam.c' 2023-04-10T06:39:24,040 adding 'pysam/include/bcftools/kmin.h' 2023-04-10T06:39:24,042 adding 'pysam/include/bcftools/main.c' 2023-04-10T06:39:24,044 adding 'pysam/include/bcftools/main.c.pysam.c' 2023-04-10T06:39:24,051 adding 'pysam/include/bcftools/mcall.c' 2023-04-10T06:39:24,060 adding 'pysam/include/bcftools/mcall.c.pysam.c' 2023-04-10T06:39:24,069 adding 'pysam/include/bcftools/mpileup.c' 2023-04-10T06:39:24,078 adding 'pysam/include/bcftools/mpileup.c.pysam.c' 2023-04-10T06:39:24,081 adding 'pysam/include/bcftools/mw.h' 2023-04-10T06:39:24,084 adding 'pysam/include/bcftools/ploidy.c' 2023-04-10T06:39:24,085 adding 'pysam/include/bcftools/ploidy.c.pysam.c' 2023-04-10T06:39:24,087 adding 'pysam/include/bcftools/ploidy.h' 2023-04-10T06:39:24,090 adding 'pysam/include/bcftools/prob1.c' 2023-04-10T06:39:24,093 adding 'pysam/include/bcftools/prob1.c.pysam.c' 2023-04-10T06:39:24,094 adding 'pysam/include/bcftools/prob1.h' 2023-04-10T06:39:24,096 adding 'pysam/include/bcftools/rbuf.h' 2023-04-10T06:39:24,100 adding 'pysam/include/bcftools/read_consensus.c' 2023-04-10T06:39:24,104 adding 'pysam/include/bcftools/read_consensus.c.pysam.c' 2023-04-10T06:39:24,106 adding 'pysam/include/bcftools/read_consensus.h' 2023-04-10T06:39:24,108 adding 'pysam/include/bcftools/regidx.c' 2023-04-10T06:39:24,111 adding 'pysam/include/bcftools/regidx.c.pysam.c' 2023-04-10T06:39:24,113 adding 'pysam/include/bcftools/regidx.h' 2023-04-10T06:39:24,117 adding 'pysam/include/bcftools/reheader.c' 2023-04-10T06:39:24,120 adding 'pysam/include/bcftools/reheader.c.pysam.c' 2023-04-10T06:39:24,122 adding 'pysam/include/bcftools/smpl_ilist.c' 2023-04-10T06:39:24,124 adding 'pysam/include/bcftools/smpl_ilist.c.pysam.c' 2023-04-10T06:39:24,125 adding 'pysam/include/bcftools/smpl_ilist.h' 2023-04-10T06:39:24,127 adding 'pysam/include/bcftools/str_finder.c' 2023-04-10T06:39:24,129 adding 'pysam/include/bcftools/str_finder.c.pysam.c' 2023-04-10T06:39:24,130 adding 'pysam/include/bcftools/str_finder.h' 2023-04-10T06:39:24,132 adding 'pysam/include/bcftools/tabix.c' 2023-04-10T06:39:24,134 adding 'pysam/include/bcftools/tabix.c.pysam.c' 2023-04-10T06:39:24,135 adding 'pysam/include/bcftools/tsv2vcf.c' 2023-04-10T06:39:24,137 adding 'pysam/include/bcftools/tsv2vcf.c.pysam.c' 2023-04-10T06:39:24,138 adding 'pysam/include/bcftools/tsv2vcf.h' 2023-04-10T06:39:24,142 adding 'pysam/include/bcftools/utlist.h' 2023-04-10T06:39:24,145 adding 'pysam/include/bcftools/variantkey.h' 2023-04-10T06:39:24,160 adding 'pysam/include/bcftools/vcfannotate.c' 2023-04-10T06:39:24,176 adding 'pysam/include/bcftools/vcfannotate.c.pysam.c' 2023-04-10T06:39:24,179 adding 'pysam/include/bcftools/vcfbuf.c' 2023-04-10T06:39:24,182 adding 'pysam/include/bcftools/vcfbuf.c.pysam.c' 2023-04-10T06:39:24,184 adding 'pysam/include/bcftools/vcfbuf.h' 2023-04-10T06:39:24,189 adding 'pysam/include/bcftools/vcfcall.c' 2023-04-10T06:39:24,195 adding 'pysam/include/bcftools/vcfcall.c.pysam.c' 2023-04-10T06:39:24,201 adding 'pysam/include/bcftools/vcfcnv.c' 2023-04-10T06:39:24,208 adding 'pysam/include/bcftools/vcfcnv.c.pysam.c' 2023-04-10T06:39:24,214 adding 'pysam/include/bcftools/vcfconcat.c' 2023-04-10T06:39:24,219 adding 'pysam/include/bcftools/vcfconcat.c.pysam.c' 2023-04-10T06:39:24,227 adding 'pysam/include/bcftools/vcfconvert.c' 2023-04-10T06:39:24,234 adding 'pysam/include/bcftools/vcfconvert.c.pysam.c' 2023-04-10T06:39:24,238 adding 'pysam/include/bcftools/vcffilter.c' 2023-04-10T06:39:24,242 adding 'pysam/include/bcftools/vcffilter.c.pysam.c' 2023-04-10T06:39:24,248 adding 'pysam/include/bcftools/vcfgtcheck.c' 2023-04-10T06:39:24,254 adding 'pysam/include/bcftools/vcfgtcheck.c.pysam.c' 2023-04-10T06:39:24,255 adding 'pysam/include/bcftools/vcfhead.c' 2023-04-10T06:39:24,257 adding 'pysam/include/bcftools/vcfhead.c.pysam.c' 2023-04-10T06:39:24,259 adding 'pysam/include/bcftools/vcfindex.c' 2023-04-10T06:39:24,261 adding 'pysam/include/bcftools/vcfindex.c.pysam.c' 2023-04-10T06:39:24,265 adding 'pysam/include/bcftools/vcfisec.c' 2023-04-10T06:39:24,268 adding 'pysam/include/bcftools/vcfisec.c.pysam.c' 2023-04-10T06:39:24,283 adding 'pysam/include/bcftools/vcfmerge.c' 2023-04-10T06:39:24,299 adding 'pysam/include/bcftools/vcfmerge.c.pysam.c' 2023-04-10T06:39:24,310 adding 'pysam/include/bcftools/vcfnorm.c' 2023-04-10T06:39:24,320 adding 'pysam/include/bcftools/vcfnorm.c.pysam.c' 2023-04-10T06:39:24,324 adding 'pysam/include/bcftools/vcfplugin.c' 2023-04-10T06:39:24,328 adding 'pysam/include/bcftools/vcfplugin.c.pysam.c' 2023-04-10T06:39:24,331 adding 'pysam/include/bcftools/vcfquery.c' 2023-04-10T06:39:24,334 adding 'pysam/include/bcftools/vcfquery.c.pysam.c' 2023-04-10T06:39:24,340 adding 'pysam/include/bcftools/vcfroh.c' 2023-04-10T06:39:24,345 adding 'pysam/include/bcftools/vcfroh.c.pysam.c' 2023-04-10T06:39:24,349 adding 'pysam/include/bcftools/vcfsom.c' 2023-04-10T06:39:24,352 adding 'pysam/include/bcftools/vcfsom.c.pysam.c' 2023-04-10T06:39:24,355 adding 'pysam/include/bcftools/vcfsort.c' 2023-04-10T06:39:24,357 adding 'pysam/include/bcftools/vcfsort.c.pysam.c' 2023-04-10T06:39:24,366 adding 'pysam/include/bcftools/vcfstats.c' 2023-04-10T06:39:24,376 adding 'pysam/include/bcftools/vcfstats.c.pysam.c' 2023-04-10T06:39:24,381 adding 'pysam/include/bcftools/vcfview.c' 2023-04-10T06:39:24,385 adding 'pysam/include/bcftools/vcfview.c.pysam.c' 2023-04-10T06:39:24,387 adding 'pysam/include/bcftools/vcmp.c' 2023-04-10T06:39:24,388 adding 'pysam/include/bcftools/vcmp.c.pysam.c' 2023-04-10T06:39:24,390 adding 'pysam/include/bcftools/vcmp.h' 2023-04-10T06:39:24,391 adding 'pysam/include/bcftools/version.c' 2023-04-10T06:39:24,393 adding 'pysam/include/bcftools/version.c.pysam.c' 2023-04-10T06:39:24,395 adding 'pysam/include/bcftools/version.sh' 2023-04-10T06:39:24,398 adding 'pysam/include/htslib/LICENSE' 2023-04-10T06:39:24,403 adding 'pysam/include/htslib/Makefile' 2023-04-10T06:39:24,405 adding 'pysam/include/htslib/README' 2023-04-10T06:39:24,408 adding 'pysam/include/htslib/bcf_sr_sort.c' 2023-04-10T06:39:24,410 adding 'pysam/include/htslib/bcf_sr_sort.h' 2023-04-10T06:39:24,420 adding 'pysam/include/htslib/bgzf.c' 2023-04-10T06:39:24,423 adding 'pysam/include/htslib/bgzip.c' 2023-04-10T06:39:24,424 adding 'pysam/include/htslib/builddir_vars.mk.in' 2023-04-10T06:39:24,426 adding 'pysam/include/htslib/config.h' 2023-04-10T06:39:24,428 adding 'pysam/include/htslib/config.h.in' 2023-04-10T06:39:24,429 adding 'pysam/include/htslib/config.mk.in' 2023-04-10T06:39:24,452 adding 'pysam/include/htslib/configure' 2023-04-10T06:39:24,456 adding 'pysam/include/htslib/configure.ac' 2023-04-10T06:39:24,458 adding 'pysam/include/htslib/errmod.c' 2023-04-10T06:39:24,461 adding 'pysam/include/htslib/faidx.c' 2023-04-10T06:39:24,471 adding 'pysam/include/htslib/header.c' 2023-04-10T06:39:24,473 adding 'pysam/include/htslib/header.h' 2023-04-10T06:39:24,479 adding 'pysam/include/htslib/hfile.c' 2023-04-10T06:39:24,481 adding 'pysam/include/htslib/hfile_gcs.c' 2023-04-10T06:39:24,483 adding 'pysam/include/htslib/hfile_internal.h' 2023-04-10T06:39:24,489 adding 'pysam/include/htslib/hfile_libcurl.c' 2023-04-10T06:39:24,494 adding 'pysam/include/htslib/hfile_s3.c' 2023-04-10T06:39:24,497 adding 'pysam/include/htslib/hfile_s3_write.c' 2023-04-10T06:39:24,515 adding 'pysam/include/htslib/hts.c' 2023-04-10T06:39:24,519 adding 'pysam/include/htslib/hts_expr.c' 2023-04-10T06:39:24,521 adding 'pysam/include/htslib/hts_internal.h' 2023-04-10T06:39:24,523 adding 'pysam/include/htslib/hts_os.c' 2023-04-10T06:39:24,525 adding 'pysam/include/htslib/hts_time_funcs.h' 2023-04-10T06:39:24,526 adding 'pysam/include/htslib/htscodecs_bundled.mk' 2023-04-10T06:39:24,528 adding 'pysam/include/htslib/htscodecs_external.mk' 2023-04-10T06:39:24,530 adding 'pysam/include/htslib/htsfile.c' 2023-04-10T06:39:24,531 adding 'pysam/include/htslib/htslib.mk' 2023-04-10T06:39:24,533 adding 'pysam/include/htslib/htslib.pc.in' 2023-04-10T06:39:24,534 adding 'pysam/include/htslib/htslib_vars.mk' 2023-04-10T06:39:24,536 adding 'pysam/include/htslib/kfunc.c' 2023-04-10T06:39:24,539 adding 'pysam/include/htslib/kstring.c' 2023-04-10T06:39:24,541 adding 'pysam/include/htslib/md5.c' 2023-04-10T06:39:24,542 adding 'pysam/include/htslib/multipart.c' 2023-04-10T06:39:24,544 adding 'pysam/include/htslib/plugin.c' 2023-04-10T06:39:24,547 adding 'pysam/include/htslib/probaln.c' 2023-04-10T06:39:24,549 adding 'pysam/include/htslib/realn.c' 2023-04-10T06:39:24,552 adding 'pysam/include/htslib/regidx.c' 2023-04-10T06:39:24,554 adding 'pysam/include/htslib/region.c' 2023-04-10T06:39:24,584 adding 'pysam/include/htslib/sam.c' 2023-04-10T06:39:24,587 adding 'pysam/include/htslib/sam_internal.h' 2023-04-10T06:39:24,593 adding 'pysam/include/htslib/synced_bcf_reader.c' 2023-04-10T06:39:24,596 adding 'pysam/include/htslib/tabix.c' 2023-04-10T06:39:24,599 adding 'pysam/include/htslib/tbx.c' 2023-04-10T06:39:24,601 adding 'pysam/include/htslib/textutils.c' 2023-04-10T06:39:24,603 adding 'pysam/include/htslib/textutils_internal.h' 2023-04-10T06:39:24,609 adding 'pysam/include/htslib/thread_pool.c' 2023-04-10T06:39:24,611 adding 'pysam/include/htslib/thread_pool_internal.h' 2023-04-10T06:39:24,632 adding 'pysam/include/htslib/vcf.c' 2023-04-10T06:39:24,634 adding 'pysam/include/htslib/vcf_sweep.c' 2023-04-10T06:39:24,638 adding 'pysam/include/htslib/vcfutils.c' 2023-04-10T06:39:24,639 adding 'pysam/include/htslib/version.sh' 2023-04-10T06:39:24,642 adding 'pysam/include/htslib/cram/cram.h' 2023-04-10T06:39:24,654 adding 'pysam/include/htslib/cram/cram_codecs.c' 2023-04-10T06:39:24,656 adding 'pysam/include/htslib/cram/cram_codecs.h' 2023-04-10T06:39:24,669 adding 'pysam/include/htslib/cram/cram_decode.c' 2023-04-10T06:39:24,671 adding 'pysam/include/htslib/cram/cram_decode.h' 2023-04-10T06:39:24,685 adding 'pysam/include/htslib/cram/cram_encode.c' 2023-04-10T06:39:24,688 adding 'pysam/include/htslib/cram/cram_encode.h' 2023-04-10T06:39:24,691 adding 'pysam/include/htslib/cram/cram_external.c' 2023-04-10T06:39:24,695 adding 'pysam/include/htslib/cram/cram_index.c' 2023-04-10T06:39:24,696 adding 'pysam/include/htslib/cram/cram_index.h' 2023-04-10T06:39:24,716 adding 'pysam/include/htslib/cram/cram_io.c' 2023-04-10T06:39:24,720 adding 'pysam/include/htslib/cram/cram_io.h' 2023-04-10T06:39:24,721 adding 'pysam/include/htslib/cram/cram_samtools.h' 2023-04-10T06:39:24,723 adding 'pysam/include/htslib/cram/cram_stats.c' 2023-04-10T06:39:24,724 adding 'pysam/include/htslib/cram/cram_stats.h' 2023-04-10T06:39:24,729 adding 'pysam/include/htslib/cram/cram_structs.h' 2023-04-10T06:39:24,731 adding 'pysam/include/htslib/cram/mFILE.c' 2023-04-10T06:39:24,733 adding 'pysam/include/htslib/cram/mFILE.h' 2023-04-10T06:39:24,734 adding 'pysam/include/htslib/cram/misc.h' 2023-04-10T06:39:24,737 adding 'pysam/include/htslib/cram/open_trace_file.c' 2023-04-10T06:39:24,738 adding 'pysam/include/htslib/cram/open_trace_file.h' 2023-04-10T06:39:24,740 adding 'pysam/include/htslib/cram/os.h' 2023-04-10T06:39:24,742 adding 'pysam/include/htslib/cram/pooled_alloc.c' 2023-04-10T06:39:24,743 adding 'pysam/include/htslib/cram/pooled_alloc.h' 2023-04-10T06:39:24,745 adding 'pysam/include/htslib/cram/string_alloc.c' 2023-04-10T06:39:24,746 adding 'pysam/include/htslib/cram/string_alloc.h' 2023-04-10T06:39:24,752 adding 'pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c' 2023-04-10T06:39:24,753 adding 'pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h' 2023-04-10T06:39:24,755 adding 'pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h' 2023-04-10T06:39:24,756 adding 'pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h' 2023-04-10T06:39:24,762 adding 'pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c' 2023-04-10T06:39:24,764 adding 'pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h' 2023-04-10T06:39:24,765 adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs.c' 2023-04-10T06:39:24,767 adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs.h' 2023-04-10T06:39:24,768 adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h' 2023-04-10T06:39:24,770 adding 'pysam/include/htslib/htscodecs/htscodecs/pack.c' 2023-04-10T06:39:24,772 adding 'pysam/include/htslib/htscodecs/htscodecs/pack.h' 2023-04-10T06:39:24,774 adding 'pysam/include/htslib/htscodecs/htscodecs/permute.h' 2023-04-10T06:39:24,776 adding 'pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h' 2023-04-10T06:39:24,779 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h' 2023-04-10T06:39:24,782 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static.c' 2023-04-10T06:39:24,783 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static.h' 2023-04-10T06:39:24,786 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h' 2023-04-10T06:39:24,789 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c' 2023-04-10T06:39:24,791 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h' 2023-04-10T06:39:24,797 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c' 2023-04-10T06:39:24,802 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c' 2023-04-10T06:39:24,809 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c' 2023-04-10T06:39:24,815 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c' 2023-04-10T06:39:24,817 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16.h' 2023-04-10T06:39:24,823 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16pr.c' 2023-04-10T06:39:24,826 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_word.h' 2023-04-10T06:39:24,828 adding 'pysam/include/htslib/htscodecs/htscodecs/rle.c' 2023-04-10T06:39:24,829 adding 'pysam/include/htslib/htscodecs/htscodecs/rle.h' 2023-04-10T06:39:24,836 adding 'pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.c' 2023-04-10T06:39:24,838 adding 'pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.h' 2023-04-10T06:39:24,840 adding 'pysam/include/htslib/htscodecs/htscodecs/utils.c' 2023-04-10T06:39:24,842 adding 'pysam/include/htslib/htscodecs/htscodecs/utils.h' 2023-04-10T06:39:24,844 adding 'pysam/include/htslib/htscodecs/htscodecs/varint.h' 2023-04-10T06:39:24,846 adding 'pysam/include/htslib/htscodecs/htscodecs/varint2.h' 2023-04-10T06:39:24,847 adding 'pysam/include/htslib/htscodecs/htscodecs/version.h' 2023-04-10T06:39:24,851 adding 'pysam/include/htslib/htslib/bgzf.h' 2023-04-10T06:39:24,854 adding 'pysam/include/htslib/htslib/cram.h' 2023-04-10T06:39:24,856 adding 'pysam/include/htslib/htslib/faidx.h' 2023-04-10T06:39:24,859 adding 'pysam/include/htslib/htslib/hfile.h' 2023-04-10T06:39:24,867 adding 'pysam/include/htslib/htslib/hts.h' 2023-04-10T06:39:24,869 adding 'pysam/include/htslib/htslib/hts_defs.h' 2023-04-10T06:39:24,871 adding 'pysam/include/htslib/htslib/hts_endian.h' 2023-04-10T06:39:24,872 adding 'pysam/include/htslib/htslib/hts_expr.h' 2023-04-10T06:39:24,874 adding 'pysam/include/htslib/htslib/hts_log.h' 2023-04-10T06:39:24,875 adding 'pysam/include/htslib/htslib/hts_os.h' 2023-04-10T06:39:24,877 adding 'pysam/include/htslib/htslib/kbitset.h' 2023-04-10T06:39:24,879 adding 'pysam/include/htslib/htslib/kfunc.h' 2023-04-10T06:39:24,882 adding 'pysam/include/htslib/htslib/khash.h' 2023-04-10T06:39:24,883 adding 'pysam/include/htslib/htslib/khash_str2int.h' 2023-04-10T06:39:24,885 adding 'pysam/include/htslib/htslib/klist.h' 2023-04-10T06:39:24,887 adding 'pysam/include/htslib/htslib/knetfile.h' 2023-04-10T06:39:24,888 adding 'pysam/include/htslib/htslib/kroundup.h' 2023-04-10T06:39:24,890 adding 'pysam/include/htslib/htslib/kseq.h' 2023-04-10T06:39:24,892 adding 'pysam/include/htslib/htslib/ksort.h' 2023-04-10T06:39:24,894 adding 'pysam/include/htslib/htslib/kstring.h' 2023-04-10T06:39:24,896 adding 'pysam/include/htslib/htslib/regidx.h' 2023-04-10T06:39:24,908 adding 'pysam/include/htslib/htslib/sam.h' 2023-04-10T06:39:24,911 adding 'pysam/include/htslib/htslib/synced_bcf_reader.h' 2023-04-10T06:39:24,913 adding 'pysam/include/htslib/htslib/tbx.h' 2023-04-10T06:39:24,915 adding 'pysam/include/htslib/htslib/thread_pool.h' 2023-04-10T06:39:24,924 adding 'pysam/include/htslib/htslib/vcf.h' 2023-04-10T06:39:24,926 adding 'pysam/include/htslib/htslib/vcf_sweep.h' 2023-04-10T06:39:24,928 adding 'pysam/include/htslib/htslib/vcfutils.h' 2023-04-10T06:39:24,930 adding 'pysam/include/htslib/m4/ax_check_compile_flag.m4' 2023-04-10T06:39:24,931 adding 'pysam/include/htslib/m4/hts_hide_dynamic_syms.m4' 2023-04-10T06:39:24,933 adding 'pysam/include/htslib/m4/hts_prog_cc_warnings.m4' 2023-04-10T06:39:24,935 adding 'pysam/include/htslib/m4/pkg.m4' 2023-04-10T06:39:24,937 adding 'pysam/include/htslib/os/lzma_stub.h' 2023-04-10T06:39:24,939 adding 'pysam/include/htslib/os/rand.c' 2023-04-10T06:39:24,943 adding 'pysam/include/samtools/LICENSE' 2023-04-10T06:39:24,944 adding 'pysam/include/samtools/README' 2023-04-10T06:39:24,952 adding 'pysam/include/samtools/amplicon_stats.c' 2023-04-10T06:39:24,960 adding 'pysam/include/samtools/amplicon_stats.c.pysam.c' 2023-04-10T06:39:24,962 adding 'pysam/include/samtools/bam.c' 2023-04-10T06:39:24,964 adding 'pysam/include/samtools/bam.c.pysam.c' 2023-04-10T06:39:24,965 adding 'pysam/include/samtools/bam.h' 2023-04-10T06:39:24,969 adding 'pysam/include/samtools/bam2depth.c' 2023-04-10T06:39:24,974 adding 'pysam/include/samtools/bam2depth.c.pysam.c' 2023-04-10T06:39:24,976 adding 'pysam/include/samtools/bam_addrprg.c' 2023-04-10T06:39:24,979 adding 'pysam/include/samtools/bam_addrprg.c.pysam.c' 2023-04-10T06:39:24,983 adding 'pysam/include/samtools/bam_ampliconclip.c' 2023-04-10T06:39:24,987 adding 'pysam/include/samtools/bam_ampliconclip.c.pysam.c' 2023-04-10T06:39:24,988 adding 'pysam/include/samtools/bam_ampliconclip.h' 2023-04-10T06:39:24,990 adding 'pysam/include/samtools/bam_aux.c' 2023-04-10T06:39:24,991 adding 'pysam/include/samtools/bam_aux.c.pysam.c' 2023-04-10T06:39:24,994 adding 'pysam/include/samtools/bam_cat.c' 2023-04-10T06:39:24,997 adding 'pysam/include/samtools/bam_cat.c.pysam.c' 2023-04-10T06:39:24,998 adding 'pysam/include/samtools/bam_color.c' 2023-04-10T06:39:25,000 adding 'pysam/include/samtools/bam_color.c.pysam.c' 2023-04-10T06:39:25,012 adding 'pysam/include/samtools/bam_consensus.c' 2023-04-10T06:39:25,024 adding 'pysam/include/samtools/bam_consensus.c.pysam.c' 2023-04-10T06:39:25,029 adding 'pysam/include/samtools/bam_fastq.c' 2023-04-10T06:39:25,033 adding 'pysam/include/samtools/bam_fastq.c.pysam.c' 2023-04-10T06:39:25,034 adding 'pysam/include/samtools/bam_flags.c' 2023-04-10T06:39:25,036 adding 'pysam/include/samtools/bam_flags.c.pysam.c' 2023-04-10T06:39:25,038 adding 'pysam/include/samtools/bam_import.c' 2023-04-10T06:39:25,041 adding 'pysam/include/samtools/bam_import.c.pysam.c' 2023-04-10T06:39:25,043 adding 'pysam/include/samtools/bam_index.c' 2023-04-10T06:39:25,045 adding 'pysam/include/samtools/bam_index.c.pysam.c' 2023-04-10T06:39:25,047 adding 'pysam/include/samtools/bam_lpileup.c' 2023-04-10T06:39:25,049 adding 'pysam/include/samtools/bam_lpileup.c.pysam.c' 2023-04-10T06:39:25,050 adding 'pysam/include/samtools/bam_lpileup.h' 2023-04-10T06:39:25,059 adding 'pysam/include/samtools/bam_markdup.c' 2023-04-10T06:39:25,068 adding 'pysam/include/samtools/bam_markdup.c.pysam.c' 2023-04-10T06:39:25,072 adding 'pysam/include/samtools/bam_mate.c' 2023-04-10T06:39:25,076 adding 'pysam/include/samtools/bam_mate.c.pysam.c' 2023-04-10T06:39:25,078 adding 'pysam/include/samtools/bam_md.c' 2023-04-10T06:39:25,081 adding 'pysam/include/samtools/bam_md.c.pysam.c' 2023-04-10T06:39:25,083 adding 'pysam/include/samtools/bam_plbuf.c' 2023-04-10T06:39:25,084 adding 'pysam/include/samtools/bam_plbuf.c.pysam.c' 2023-04-10T06:39:25,086 adding 'pysam/include/samtools/bam_plbuf.h' 2023-04-10T06:39:25,091 adding 'pysam/include/samtools/bam_plcmd.c' 2023-04-10T06:39:25,096 adding 'pysam/include/samtools/bam_plcmd.c.pysam.c' 2023-04-10T06:39:25,098 adding 'pysam/include/samtools/bam_quickcheck.c' 2023-04-10T06:39:25,100 adding 'pysam/include/samtools/bam_quickcheck.c.pysam.c' 2023-04-10T06:39:25,103 adding 'pysam/include/samtools/bam_reheader.c' 2023-04-10T06:39:25,106 adding 'pysam/include/samtools/bam_reheader.c.pysam.c' 2023-04-10T06:39:25,108 adding 'pysam/include/samtools/bam_rmdup.c' 2023-04-10T06:39:25,110 adding 'pysam/include/samtools/bam_rmdup.c.pysam.c' 2023-04-10T06:39:25,112 adding 'pysam/include/samtools/bam_rmdupse.c' 2023-04-10T06:39:25,114 adding 'pysam/include/samtools/bam_rmdupse.c.pysam.c' 2023-04-10T06:39:25,116 adding 'pysam/include/samtools/bam_samples.c' 2023-04-10T06:39:25,119 adding 'pysam/include/samtools/bam_samples.c.pysam.c' 2023-04-10T06:39:25,133 adding 'pysam/include/samtools/bam_sort.c' 2023-04-10T06:39:25,148 adding 'pysam/include/samtools/bam_sort.c.pysam.c' 2023-04-10T06:39:25,151 adding 'pysam/include/samtools/bam_split.c' 2023-04-10T06:39:25,154 adding 'pysam/include/samtools/bam_split.c.pysam.c' 2023-04-10T06:39:25,157 adding 'pysam/include/samtools/bam_stat.c' 2023-04-10T06:39:25,159 adding 'pysam/include/samtools/bam_stat.c.pysam.c' 2023-04-10T06:39:25,162 adding 'pysam/include/samtools/bamshuf.c' 2023-04-10T06:39:25,165 adding 'pysam/include/samtools/bamshuf.c.pysam.c' 2023-04-10T06:39:25,167 adding 'pysam/include/samtools/bamtk.c' 2023-04-10T06:39:25,169 adding 'pysam/include/samtools/bamtk.c.pysam.c' 2023-04-10T06:39:25,171 adding 'pysam/include/samtools/bedcov.c' 2023-04-10T06:39:25,174 adding 'pysam/include/samtools/bedcov.c.pysam.c' 2023-04-10T06:39:25,176 adding 'pysam/include/samtools/bedidx.c' 2023-04-10T06:39:25,180 adding 'pysam/include/samtools/bedidx.c.pysam.c' 2023-04-10T06:39:25,181 adding 'pysam/include/samtools/bedidx.h' 2023-04-10T06:39:25,182 adding 'pysam/include/samtools/config.h' 2023-04-10T06:39:25,185 adding 'pysam/include/samtools/consensus_pileup.c' 2023-04-10T06:39:25,188 adding 'pysam/include/samtools/consensus_pileup.c.pysam.c' 2023-04-10T06:39:25,190 adding 'pysam/include/samtools/consensus_pileup.h' 2023-04-10T06:39:25,193 adding 'pysam/include/samtools/coverage.c' 2023-04-10T06:39:25,197 adding 'pysam/include/samtools/coverage.c.pysam.c' 2023-04-10T06:39:25,200 adding 'pysam/include/samtools/cram_size.c' 2023-04-10T06:39:25,203 adding 'pysam/include/samtools/cram_size.c.pysam.c' 2023-04-10T06:39:25,205 adding 'pysam/include/samtools/cut_target.c' 2023-04-10T06:39:25,207 adding 'pysam/include/samtools/cut_target.c.pysam.c' 2023-04-10T06:39:25,209 adding 'pysam/include/samtools/dict.c' 2023-04-10T06:39:25,211 adding 'pysam/include/samtools/dict.c.pysam.c' 2023-04-10T06:39:25,213 adding 'pysam/include/samtools/faidx.c' 2023-04-10T06:39:25,216 adding 'pysam/include/samtools/faidx.c.pysam.c' 2023-04-10T06:39:25,219 adding 'pysam/include/samtools/padding.c' 2023-04-10T06:39:25,222 adding 'pysam/include/samtools/padding.c.pysam.c' 2023-04-10T06:39:25,227 adding 'pysam/include/samtools/phase.c' 2023-04-10T06:39:25,231 adding 'pysam/include/samtools/phase.c.pysam.c' 2023-04-10T06:39:25,234 adding 'pysam/include/samtools/reference.c' 2023-04-10T06:39:25,237 adding 'pysam/include/samtools/reference.c.pysam.c' 2023-04-10T06:39:25,240 adding 'pysam/include/samtools/reset.c' 2023-04-10T06:39:25,243 adding 'pysam/include/samtools/reset.c.pysam.c' 2023-04-10T06:39:25,244 adding 'pysam/include/samtools/sam_opts.c' 2023-04-10T06:39:25,246 adding 'pysam/include/samtools/sam_opts.c.pysam.c' 2023-04-10T06:39:25,248 adding 'pysam/include/samtools/sam_opts.h' 2023-04-10T06:39:25,250 adding 'pysam/include/samtools/sam_utils.c' 2023-04-10T06:39:25,251 adding 'pysam/include/samtools/sam_utils.c.pysam.c' 2023-04-10T06:39:25,253 adding 'pysam/include/samtools/sam_utils.h' 2023-04-10T06:39:25,260 adding 'pysam/include/samtools/sam_view.c' 2023-04-10T06:39:25,267 adding 'pysam/include/samtools/sam_view.c.pysam.c' 2023-04-10T06:39:25,269 adding 'pysam/include/samtools/sample.c' 2023-04-10T06:39:25,270 adding 'pysam/include/samtools/sample.c.pysam.c' 2023-04-10T06:39:25,272 adding 'pysam/include/samtools/sample.h' 2023-04-10T06:39:25,273 adding 'pysam/include/samtools/samtools.h' 2023-04-10T06:39:25,275 adding 'pysam/include/samtools/samtools.pysam.c' 2023-04-10T06:39:25,276 adding 'pysam/include/samtools/samtools.pysam.h' 2023-04-10T06:39:25,278 adding 'pysam/include/samtools/splaysort.h' 2023-04-10T06:39:25,290 adding 'pysam/include/samtools/stats.c' 2023-04-10T06:39:25,302 adding 'pysam/include/samtools/stats.c.pysam.c' 2023-04-10T06:39:25,305 adding 'pysam/include/samtools/stats_isize.c' 2023-04-10T06:39:25,307 adding 'pysam/include/samtools/stats_isize.c.pysam.c' 2023-04-10T06:39:25,308 adding 'pysam/include/samtools/stats_isize.h' 2023-04-10T06:39:25,310 adding 'pysam/include/samtools/tmp_file.c' 2023-04-10T06:39:25,313 adding 'pysam/include/samtools/tmp_file.c.pysam.c' 2023-04-10T06:39:25,314 adding 'pysam/include/samtools/tmp_file.h' 2023-04-10T06:39:25,316 adding 'pysam/include/samtools/version.sh' 2023-04-10T06:39:25,318 adding 'pysam/include/samtools/lz4/LICENSE' 2023-04-10T06:39:25,324 adding 'pysam/include/samtools/lz4/lz4.c' 2023-04-10T06:39:25,331 adding 'pysam/include/samtools/lz4/lz4.c.pysam.c' 2023-04-10T06:39:25,335 adding 'pysam/include/samtools/lz4/lz4.h' 2023-04-10T06:39:25,337 adding 'pysam-0.21.0.dist-info/AUTHORS' 2023-04-10T06:39:25,338 adding 'pysam-0.21.0.dist-info/COPYING' 2023-04-10T06:39:25,340 adding 'pysam-0.21.0.dist-info/METADATA' 2023-04-10T06:39:25,341 adding 'pysam-0.21.0.dist-info/WHEEL' 2023-04-10T06:39:25,342 adding 'pysam-0.21.0.dist-info/top_level.txt' 2023-04-10T06:39:25,350 adding 'pysam-0.21.0.dist-info/RECORD' 2023-04-10T06:39:25,591 removing build/bdist.linux-armv7l/wheel 2023-04-10T06:39:25,889 Building wheel for pysam (pyproject.toml): finished with status 'done' 2023-04-10T06:39:26,251 Created wheel for pysam: filename=pysam-0.21.0-cp39-cp39-linux_armv7l.whl size=16078437 sha256=c9e522129e90c8727fdf653d86d9dd8a1c770aaae42c25cabed1688ef323c1e5 2023-04-10T06:39:26,253 Stored in directory: /tmp/pip-ephem-wheel-cache-gjuxj94z/wheels/bd/4e/03/3ab473aac64d45a0cfbb8e8d5ff733b160daa30a559b4c595f 2023-04-10T06:39:26,289 Successfully built pysam 2023-04-10T06:39:26,973 Removed build tracker: '/tmp/pip-build-tracker-_sn90u7n'