2023-04-11T09:07:30,418 Created temporary directory: /tmp/pip-ephem-wheel-cache-hijqd07c 2023-04-11T09:07:30,423 Created temporary directory: /tmp/pip-build-tracker-cj0fwseu 2023-04-11T09:07:30,424 Initialized build tracking at /tmp/pip-build-tracker-cj0fwseu 2023-04-11T09:07:30,424 Created build tracker: /tmp/pip-build-tracker-cj0fwseu 2023-04-11T09:07:30,425 Entered build tracker: /tmp/pip-build-tracker-cj0fwseu 2023-04-11T09:07:30,426 Created temporary directory: /tmp/pip-wheel-ahgy9c52 2023-04-11T09:07:30,436 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-04-11T09:07:30,442 Created temporary directory: /tmp/pip-ephem-wheel-cache-6w6c4eit 2023-04-11T09:07:30,504 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-04-11T09:07:30,511 2 location(s) to search for versions of kmergenetyper: 2023-04-11T09:07:30,511 * https://pypi.org/simple/kmergenetyper/ 2023-04-11T09:07:30,511 * https://www.piwheels.org/simple/kmergenetyper/ 2023-04-11T09:07:30,512 Fetching project page and analyzing links: https://pypi.org/simple/kmergenetyper/ 2023-04-11T09:07:30,513 Getting page https://pypi.org/simple/kmergenetyper/ 2023-04-11T09:07:30,517 Found index url https://pypi.org/simple 2023-04-11T09:07:30,715 Fetched page https://pypi.org/simple/kmergenetyper/ as application/vnd.pypi.simple.v1+json 2023-04-11T09:07:30,720 Found link https://files.pythonhosted.org/packages/07/e1/32da0abd3e1a424d0dfdfababf8f55009a9070f094daba8269857c24b6fb/kmergenetyper-1.0.0.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.0 2023-04-11T09:07:30,721 Found link https://files.pythonhosted.org/packages/ef/4b/5da7fc6c85ee329fdbad2f7cd0c556baf9e43a19267f4693def6b0e9bf55/kmergenetyper-1.0.1.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.1 2023-04-11T09:07:30,721 Found link https://files.pythonhosted.org/packages/0c/ea/c9704184cd46f95e44d28df008c16492f8d116a0312a524a40dc33015ad4/kmergenetyper-1.0.2.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.2 2023-04-11T09:07:30,722 Found link https://files.pythonhosted.org/packages/05/8b/76626c85314fa93a971a8a1fd2b8b5d2e29819511dca49ae79cc1d81bf6e/kmergenetyper-1.0.3.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.3 2023-04-11T09:07:30,723 Found link https://files.pythonhosted.org/packages/43/78/c63fbd748d8a0ebe0451ec683eb39c2402c05cf366bf298b352eaaf05378/kmergenetyper-1.0.4.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.4 2023-04-11T09:07:30,723 Found link https://files.pythonhosted.org/packages/91/e7/399c3dc59073bec9c6ee33ea6b3c6b12d1cc23e1393fa0cc6e2c53fe7937/kmergenetyper-1.0.5.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.5 2023-04-11T09:07:30,724 Found link https://files.pythonhosted.org/packages/f4/f9/8fe8e7c0cce978be0f000eaa3a1b9b9c49b3584a3913a2eec332a4146569/kmergenetyper-1.0.6.tar.gz (from https://pypi.org/simple/kmergenetyper/), version: 1.0.6 2023-04-11T09:07:30,725 Fetching project page and analyzing links: https://www.piwheels.org/simple/kmergenetyper/ 2023-04-11T09:07:30,726 Getting page https://www.piwheels.org/simple/kmergenetyper/ 2023-04-11T09:07:30,728 Found index url https://www.piwheels.org/simple 2023-04-11T09:07:30,952 Fetched page https://www.piwheels.org/simple/kmergenetyper/ as text/html 2023-04-11T09:07:30,959 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.5-py3-none-any.whl#sha256=877e9f780151c571325541fd815a495ffc63a5d59a10bb71b900d649a52791b3 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-04-11T09:07:30,960 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.4-py3-none-any.whl#sha256=d48c366b8f5b9a584c25199de4ad637d9148de4f7e690cf89dbc99bc0bf3cd12 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-04-11T09:07:30,960 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.3-py3-none-any.whl#sha256=4da0dc59a822ade5f5437e73b699edf2efd0c1ced5911496db506d0f99f8c6fc (from https://www.piwheels.org/simple/kmergenetyper/) 2023-04-11T09:07:30,961 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.2-py3-none-any.whl#sha256=8647efa3afcd2812e0cddd6b46be8e62ba9cee51f8c364a62820efc5faf54b69 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-04-11T09:07:30,961 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.1-py3-none-any.whl#sha256=0ac6724b8b358e46144560e2fc69d753c7ebfa34243a55477bdb59221da645dd (from https://www.piwheels.org/simple/kmergenetyper/) 2023-04-11T09:07:30,962 Skipping link: No binaries permitted for kmergenetyper: https://www.piwheels.org/simple/kmergenetyper/kmergenetyper-1.0.0-py3-none-any.whl#sha256=f9349c95e0500e10963c0c41b8419305a344ceda1e21cd271ff2ac1b6e0652f6 (from https://www.piwheels.org/simple/kmergenetyper/) 2023-04-11T09:07:30,962 Skipping link: not a file: https://www.piwheels.org/simple/kmergenetyper/ 2023-04-11T09:07:30,963 Skipping link: not a file: https://pypi.org/simple/kmergenetyper/ 2023-04-11T09:07:30,998 Given no hashes to check 1 links for project 'kmergenetyper': discarding no candidates 2023-04-11T09:07:31,028 Collecting kmergenetyper==1.0.6 2023-04-11T09:07:31,033 Created temporary directory: /tmp/pip-unpack-hzixn0fu 2023-04-11T09:07:31,257 Downloading kmergenetyper-1.0.6.tar.gz (7.6 kB) 2023-04-11T09:07:31,337 Added kmergenetyper==1.0.6 from https://files.pythonhosted.org/packages/f4/f9/8fe8e7c0cce978be0f000eaa3a1b9b9c49b3584a3913a2eec332a4146569/kmergenetyper-1.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-cj0fwseu' 2023-04-11T09:07:31,341 Running setup.py (path:/tmp/pip-wheel-ahgy9c52/kmergenetyper_318e7efed7ec433c93d15d7096734ff6/setup.py) egg_info for package kmergenetyper 2023-04-11T09:07:31,342 Created temporary directory: /tmp/pip-pip-egg-info-sv8jlibw 2023-04-11T09:07:31,343 Preparing metadata (setup.py): started 2023-04-11T09:07:31,345 Running command python setup.py egg_info 2023-04-11T09:07:33,003 running egg_info 2023-04-11T09:07:33,012 creating /tmp/pip-pip-egg-info-sv8jlibw/kmergenetyper.egg-info 2023-04-11T09:07:33,105 writing /tmp/pip-pip-egg-info-sv8jlibw/kmergenetyper.egg-info/PKG-INFO 2023-04-11T09:07:33,110 writing dependency_links to /tmp/pip-pip-egg-info-sv8jlibw/kmergenetyper.egg-info/dependency_links.txt 2023-04-11T09:07:33,114 writing top-level names to /tmp/pip-pip-egg-info-sv8jlibw/kmergenetyper.egg-info/top_level.txt 2023-04-11T09:07:33,117 writing manifest file '/tmp/pip-pip-egg-info-sv8jlibw/kmergenetyper.egg-info/SOURCES.txt' 2023-04-11T09:07:33,505 reading manifest file '/tmp/pip-pip-egg-info-sv8jlibw/kmergenetyper.egg-info/SOURCES.txt' 2023-04-11T09:07:33,509 adding license file 'LICENSE' 2023-04-11T09:07:33,513 writing manifest file '/tmp/pip-pip-egg-info-sv8jlibw/kmergenetyper.egg-info/SOURCES.txt' 2023-04-11T09:07:33,631 Preparing metadata (setup.py): finished with status 'done' 2023-04-11T09:07:33,642 Source in /tmp/pip-wheel-ahgy9c52/kmergenetyper_318e7efed7ec433c93d15d7096734ff6 has version 1.0.6, which satisfies requirement kmergenetyper==1.0.6 from https://files.pythonhosted.org/packages/f4/f9/8fe8e7c0cce978be0f000eaa3a1b9b9c49b3584a3913a2eec332a4146569/kmergenetyper-1.0.6.tar.gz 2023-04-11T09:07:33,644 Removed kmergenetyper==1.0.6 from https://files.pythonhosted.org/packages/f4/f9/8fe8e7c0cce978be0f000eaa3a1b9b9c49b3584a3913a2eec332a4146569/kmergenetyper-1.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-cj0fwseu' 2023-04-11T09:07:33,653 Created temporary directory: /tmp/pip-unpack-5x562put 2023-04-11T09:07:33,654 Building wheels for collected packages: kmergenetyper 2023-04-11T09:07:33,664 Created temporary directory: /tmp/pip-wheel-mfsdf_op 2023-04-11T09:07:33,664 Building wheel for kmergenetyper (setup.py): started 2023-04-11T09:07:33,666 Destination directory: /tmp/pip-wheel-mfsdf_op 2023-04-11T09:07:33,667 Running command python setup.py bdist_wheel 2023-04-11T09:07:35,988 running bdist_wheel 2023-04-11T09:07:36,273 running build 2023-04-11T09:07:36,274 running build_py 2023-04-11T09:07:36,376 creating build 2023-04-11T09:07:36,377 creating build/lib 2023-04-11T09:07:36,378 creating build/lib/kmergenetyper 2023-04-11T09:07:36,381 copying kmergenetyper/version.py -> build/lib/kmergenetyper 2023-04-11T09:07:36,385 copying kmergenetyper/realignConsensus.py -> build/lib/kmergenetyper 2023-04-11T09:07:36,389 copying kmergenetyper/kma.py -> build/lib/kmergenetyper 2023-04-11T09:07:36,393 copying kmergenetyper/typeGenes.py -> build/lib/kmergenetyper 2023-04-11T09:07:36,396 copying kmergenetyper/__init__.py -> build/lib/kmergenetyper 2023-04-11T09:07:36,398 running egg_info 2023-04-11T09:07:36,616 writing kmergenetyper.egg-info/PKG-INFO 2023-04-11T09:07:36,621 writing dependency_links to kmergenetyper.egg-info/dependency_links.txt 2023-04-11T09:07:36,625 writing top-level names to kmergenetyper.egg-info/top_level.txt 2023-04-11T09:07:36,724 reading manifest file 'kmergenetyper.egg-info/SOURCES.txt' 2023-04-11T09:07:36,728 adding license file 'LICENSE' 2023-04-11T09:07:36,733 writing manifest file 'kmergenetyper.egg-info/SOURCES.txt' 2023-04-11T09:07:36,739 running build_scripts 2023-04-11T09:07:36,740 creating build/scripts-3.7 2023-04-11T09:07:36,743 copying and adjusting bin/kmergenetyper -> build/scripts-3.7 2023-04-11T09:07:36,745 changing mode of build/scripts-3.7/kmergenetyper from 644 to 755 2023-04-11T09:07:36,848 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-04-11T09:07:36,848 setuptools.SetuptoolsDeprecationWarning, 2023-04-11T09:07:36,945 installing to build/bdist.linux-armv7l/wheel 2023-04-11T09:07:36,945 running install 2023-04-11T09:07:37,004 running install_lib 2023-04-11T09:07:37,102 creating build/bdist.linux-armv7l 2023-04-11T09:07:37,103 creating build/bdist.linux-armv7l/wheel 2023-04-11T09:07:37,107 creating build/bdist.linux-armv7l/wheel/kmergenetyper 2023-04-11T09:07:37,109 copying build/lib/kmergenetyper/version.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-04-11T09:07:37,113 copying build/lib/kmergenetyper/realignConsensus.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-04-11T09:07:37,117 copying build/lib/kmergenetyper/kma.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-04-11T09:07:37,121 copying build/lib/kmergenetyper/typeGenes.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-04-11T09:07:37,125 copying build/lib/kmergenetyper/__init__.py -> build/bdist.linux-armv7l/wheel/kmergenetyper 2023-04-11T09:07:37,127 running install_egg_info 2023-04-11T09:07:37,235 Copying kmergenetyper.egg-info to build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.6-py3.7.egg-info 2023-04-11T09:07:37,252 running install_scripts 2023-04-11T09:07:37,254 creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.6.data 2023-04-11T09:07:37,255 creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.6.data/scripts 2023-04-11T09:07:37,258 copying build/scripts-3.7/kmergenetyper -> build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.6.data/scripts 2023-04-11T09:07:37,262 changing mode of build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.6.data/scripts/kmergenetyper to 755 2023-04-11T09:07:37,287 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-04-11T09:07:37,296 creating build/bdist.linux-armv7l/wheel/kmergenetyper-1.0.6.dist-info/WHEEL 2023-04-11T09:07:37,301 creating '/tmp/pip-wheel-mfsdf_op/kmergenetyper-1.0.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-04-11T09:07:37,306 adding 'kmergenetyper/__init__.py' 2023-04-11T09:07:37,309 adding 'kmergenetyper/kma.py' 2023-04-11T09:07:37,312 adding 'kmergenetyper/realignConsensus.py' 2023-04-11T09:07:37,314 adding 'kmergenetyper/typeGenes.py' 2023-04-11T09:07:37,317 adding 'kmergenetyper/version.py' 2023-04-11T09:07:37,321 adding 'kmergenetyper-1.0.6.data/scripts/kmergenetyper' 2023-04-11T09:07:37,329 adding 'kmergenetyper-1.0.6.dist-info/LICENSE' 2023-04-11T09:07:37,331 adding 'kmergenetyper-1.0.6.dist-info/METADATA' 2023-04-11T09:07:37,333 adding 'kmergenetyper-1.0.6.dist-info/WHEEL' 2023-04-11T09:07:37,335 adding 'kmergenetyper-1.0.6.dist-info/top_level.txt' 2023-04-11T09:07:37,336 adding 'kmergenetyper-1.0.6.dist-info/RECORD' 2023-04-11T09:07:37,339 removing build/bdist.linux-armv7l/wheel 2023-04-11T09:07:37,496 Building wheel for kmergenetyper (setup.py): finished with status 'done' 2023-04-11T09:07:37,503 Created wheel for kmergenetyper: filename=kmergenetyper-1.0.6-py3-none-any.whl size=8957 sha256=ab143997e9a6010d7564b7eb332e30020e906dccb16109f80e7d9e7a4f7f522c 2023-04-11T09:07:37,505 Stored in directory: /tmp/pip-ephem-wheel-cache-6w6c4eit/wheels/5e/f7/fd/722d006e5de03f235114628e017a436d5485e7bd6721fa04b5 2023-04-11T09:07:37,532 Successfully built kmergenetyper 2023-04-11T09:07:37,539 Removed build tracker: '/tmp/pip-build-tracker-cj0fwseu'