2023-04-11T09:07:44,263 Created temporary directory: /tmp/pip-ephem-wheel-cache-kujmkmf6 2023-04-11T09:07:44,268 Created temporary directory: /tmp/pip-build-tracker-vvmfa3mr 2023-04-11T09:07:44,269 Initialized build tracking at /tmp/pip-build-tracker-vvmfa3mr 2023-04-11T09:07:44,269 Created build tracker: /tmp/pip-build-tracker-vvmfa3mr 2023-04-11T09:07:44,270 Entered build tracker: /tmp/pip-build-tracker-vvmfa3mr 2023-04-11T09:07:44,271 Created temporary directory: /tmp/pip-wheel-61s7sf3r 2023-04-11T09:07:44,281 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-04-11T09:07:44,287 Created temporary directory: /tmp/pip-ephem-wheel-cache-47ueqv_z 2023-04-11T09:07:44,341 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-04-11T09:07:44,348 2 location(s) to search for versions of atlas-densities: 2023-04-11T09:07:44,348 * https://pypi.org/simple/atlas-densities/ 2023-04-11T09:07:44,348 * https://www.piwheels.org/simple/atlas-densities/ 2023-04-11T09:07:44,349 Fetching project page and analyzing links: https://pypi.org/simple/atlas-densities/ 2023-04-11T09:07:44,350 Getting page https://pypi.org/simple/atlas-densities/ 2023-04-11T09:07:44,354 Found index url https://pypi.org/simple 2023-04-11T09:07:44,581 Fetched page https://pypi.org/simple/atlas-densities/ as application/vnd.pypi.simple.v1+json 2023-04-11T09:07:44,586 Found link https://files.pythonhosted.org/packages/75/a0/31e863dae4118b005ede7f6d9098a6910b9864be8a7912235629124fd1fe/atlas-densities-0.1.1.dev1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.1.dev1 2023-04-11T09:07:44,588 Found link https://files.pythonhosted.org/packages/de/06/e8be8865b4bd500f567d873b884c95bc950e82d6b629daf4d2b51feee07f/atlas-densities-0.1.1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.1 2023-04-11T09:07:44,589 Found link https://files.pythonhosted.org/packages/1c/7f/424e4e2a31de90b29ad4b08c106a94110c84fd3472800a26707cb6793cda/atlas-densities-0.1.2.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.2 2023-04-11T09:07:44,591 Found link https://files.pythonhosted.org/packages/d4/ff/487cd59cb1c04b581dfba1c835112a7d148c70f90af88e968e5013cfd229/atlas-densities-0.1.3.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.3 2023-04-11T09:07:44,592 Found link https://files.pythonhosted.org/packages/86/f5/7c7feea0c4c3d9bed1be86bed2d079ec3d076053276e24de09639bf6c4dd/atlas-densities-0.1.4.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.4 2023-04-11T09:07:44,593 Fetching project page and analyzing links: https://www.piwheels.org/simple/atlas-densities/ 2023-04-11T09:07:44,594 Getting page https://www.piwheels.org/simple/atlas-densities/ 2023-04-11T09:07:44,596 Found index url https://www.piwheels.org/simple 2023-04-11T09:07:44,819 Fetched page https://www.piwheels.org/simple/atlas-densities/ as text/html 2023-04-11T09:07:44,824 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.3-py3-none-any.whl#sha256=e570061be8379bb89033a1cbbb97eb0754c41fe0214fa16447a01c7ec91a1a9f (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2023-04-11T09:07:44,825 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.2-py3-none-any.whl#sha256=8525ddeb5820cac5646a8e64609c379dfeda0ef3c1e0fddf611b904fe6717f9a (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2023-04-11T09:07:44,826 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.1-py3-none-any.whl#sha256=0d8958b6a96c5a8bbb5f56954b074f97f56f62d4bf7d2feb02f324fdd9365ce4 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2023-04-11T09:07:44,826 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.1.dev1-py3-none-any.whl#sha256=d5e13258a7e5662c891cc5061dc517d14138a9ea76e72ad43d422c688c5c73b6 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2023-04-11T09:07:44,827 Skipping link: not a file: https://www.piwheels.org/simple/atlas-densities/ 2023-04-11T09:07:44,827 Skipping link: not a file: https://pypi.org/simple/atlas-densities/ 2023-04-11T09:07:44,861 Given no hashes to check 1 links for project 'atlas-densities': discarding no candidates 2023-04-11T09:07:44,891 Collecting atlas-densities==0.1.4 2023-04-11T09:07:44,896 Created temporary directory: /tmp/pip-unpack-hqyf1ax0 2023-04-11T09:07:45,131 Downloading atlas-densities-0.1.4.tar.gz (1.3 MB) 2023-04-11T09:07:46,510 Added atlas-densities==0.1.4 from https://files.pythonhosted.org/packages/86/f5/7c7feea0c4c3d9bed1be86bed2d079ec3d076053276e24de09639bf6c4dd/atlas-densities-0.1.4.tar.gz to build tracker '/tmp/pip-build-tracker-vvmfa3mr' 2023-04-11T09:07:46,513 Running setup.py (path:/tmp/pip-wheel-61s7sf3r/atlas-densities_be9db7711c4447b58e605f503a9250b6/setup.py) egg_info for package atlas-densities 2023-04-11T09:07:46,514 Created temporary directory: /tmp/pip-pip-egg-info-2iiga8yy 2023-04-11T09:07:46,515 Preparing metadata (setup.py): started 2023-04-11T09:07:46,517 Running command python setup.py egg_info 2023-04-11T09:08:00,975 running egg_info 2023-04-11T09:08:00,978 creating /tmp/pip-pip-egg-info-2iiga8yy/atlas_densities.egg-info 2023-04-11T09:08:01,066 writing /tmp/pip-pip-egg-info-2iiga8yy/atlas_densities.egg-info/PKG-INFO 2023-04-11T09:08:01,071 writing dependency_links to /tmp/pip-pip-egg-info-2iiga8yy/atlas_densities.egg-info/dependency_links.txt 2023-04-11T09:08:01,075 writing entry points to /tmp/pip-pip-egg-info-2iiga8yy/atlas_densities.egg-info/entry_points.txt 2023-04-11T09:08:01,078 writing requirements to /tmp/pip-pip-egg-info-2iiga8yy/atlas_densities.egg-info/requires.txt 2023-04-11T09:08:01,080 writing top-level names to /tmp/pip-pip-egg-info-2iiga8yy/atlas_densities.egg-info/top_level.txt 2023-04-11T09:08:01,083 writing manifest file '/tmp/pip-pip-egg-info-2iiga8yy/atlas_densities.egg-info/SOURCES.txt' 2023-04-11T09:08:01,609 /usr/local/lib/python3.7/dist-packages/setuptools/__init__.py:85: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. 2023-04-11T09:08:01,609 dist.fetch_build_eggs(dist.setup_requires) 2023-04-11T09:08:01,610 listing git files failed - pretending there aren't any 2023-04-11T09:08:01,634 reading manifest file '/tmp/pip-pip-egg-info-2iiga8yy/atlas_densities.egg-info/SOURCES.txt' 2023-04-11T09:08:01,638 reading manifest template 'MANIFEST.in' 2023-04-11T09:08:01,704 adding license file 'LICENSE.txt' 2023-04-11T09:08:01,705 adding license file 'AUTHORS.txt' 2023-04-11T09:08:01,722 writing manifest file '/tmp/pip-pip-egg-info-2iiga8yy/atlas_densities.egg-info/SOURCES.txt' 2023-04-11T09:08:01,888 Preparing metadata (setup.py): finished with status 'done' 2023-04-11T09:08:01,905 Source in /tmp/pip-wheel-61s7sf3r/atlas-densities_be9db7711c4447b58e605f503a9250b6 has version 0.1.4, which satisfies requirement atlas-densities==0.1.4 from https://files.pythonhosted.org/packages/86/f5/7c7feea0c4c3d9bed1be86bed2d079ec3d076053276e24de09639bf6c4dd/atlas-densities-0.1.4.tar.gz 2023-04-11T09:08:01,906 Removed atlas-densities==0.1.4 from https://files.pythonhosted.org/packages/86/f5/7c7feea0c4c3d9bed1be86bed2d079ec3d076053276e24de09639bf6c4dd/atlas-densities-0.1.4.tar.gz from build tracker '/tmp/pip-build-tracker-vvmfa3mr' 2023-04-11T09:08:01,924 Created temporary directory: /tmp/pip-unpack-5eitkdtw 2023-04-11T09:08:01,925 Building wheels for collected packages: atlas-densities 2023-04-11T09:08:01,934 Created temporary directory: /tmp/pip-wheel-33owmbqi 2023-04-11T09:08:01,935 Building wheel for atlas-densities (setup.py): started 2023-04-11T09:08:01,937 Destination directory: /tmp/pip-wheel-33owmbqi 2023-04-11T09:08:01,937 Running command python setup.py bdist_wheel 2023-04-11T09:08:03,719 /usr/local/lib/python3.7/dist-packages/setuptools/__init__.py:85: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. 2023-04-11T09:08:03,721 dist.fetch_build_eggs(dist.setup_requires) 2023-04-11T09:08:05,484 running bdist_wheel 2023-04-11T09:08:05,762 running build 2023-04-11T09:08:05,762 running build_py 2023-04-11T09:08:05,862 creating build 2023-04-11T09:08:05,863 creating build/lib 2023-04-11T09:08:05,864 creating build/lib/tests 2023-04-11T09:08:05,867 copying tests/__init__.py -> build/lib/tests 2023-04-11T09:08:05,870 copying tests/test_utils.py -> build/lib/tests 2023-04-11T09:08:05,874 copying tests/mocking_tools.py -> build/lib/tests 2023-04-11T09:08:05,879 creating build/lib/atlas_densities 2023-04-11T09:08:05,880 copying atlas_densities/version.py -> build/lib/atlas_densities 2023-04-11T09:08:05,884 copying atlas_densities/__init__.py -> build/lib/atlas_densities 2023-04-11T09:08:05,888 copying atlas_densities/utils.py -> build/lib/atlas_densities 2023-04-11T09:08:05,892 copying atlas_densities/exceptions.py -> build/lib/atlas_densities 2023-04-11T09:08:05,897 creating build/lib/tests/combination 2023-04-11T09:08:05,898 copying tests/combination/test_annotations_combinator.py -> build/lib/tests/combination 2023-04-11T09:08:05,903 copying tests/combination/__init__.py -> build/lib/tests/combination 2023-04-11T09:08:05,906 copying tests/combination/test_markers_combinator.py -> build/lib/tests/combination 2023-04-11T09:08:05,912 creating build/lib/tests/densities 2023-04-11T09:08:05,914 copying tests/densities/test_inhibitory_neuron_density.py -> build/lib/tests/densities 2023-04-11T09:08:05,919 copying tests/densities/test_cell_density.py -> build/lib/tests/densities 2023-04-11T09:08:05,922 copying tests/densities/__init__.py -> build/lib/tests/densities 2023-04-11T09:08:05,925 copying tests/densities/test_utils.py -> build/lib/tests/densities 2023-04-11T09:08:05,930 copying tests/densities/test_cell_counts.py -> build/lib/tests/densities 2023-04-11T09:08:05,934 copying tests/densities/test_inhibitory_neuron_density_optimization.py -> build/lib/tests/densities 2023-04-11T09:08:05,939 copying tests/densities/test_measurement_to_density.py -> build/lib/tests/densities 2023-04-11T09:08:05,944 copying tests/densities/test_inhibitory_neuron_densities_helper.py -> build/lib/tests/densities 2023-04-11T09:08:05,948 copying tests/densities/test_mtype_densities_from_map.py -> build/lib/tests/densities 2023-04-11T09:08:05,953 copying tests/densities/test_excitatory_inhibitory_splitting.py -> build/lib/tests/densities 2023-04-11T09:08:05,957 copying tests/densities/test_glia_densities.py -> build/lib/tests/densities 2023-04-11T09:08:05,962 copying tests/densities/test_fitting.py -> build/lib/tests/densities 2023-04-11T09:08:05,967 copying tests/densities/test_refined_inhibitory_neuron_density.py -> build/lib/tests/densities 2023-04-11T09:08:05,973 copying tests/densities/test_excel_reader.py -> build/lib/tests/densities 2023-04-11T09:08:05,978 copying tests/densities/test_mtype_densities_from_profiles.py -> build/lib/tests/densities 2023-04-11T09:08:05,983 copying tests/densities/test_optimization_initialization.py -> build/lib/tests/densities 2023-04-11T09:08:05,989 copying tests/densities/test_mtype_densities_from_composition.py -> build/lib/tests/densities 2023-04-11T09:08:05,995 creating build/lib/tests/app 2023-04-11T09:08:05,996 copying tests/app/test_mtype_densities.py -> build/lib/tests/app 2023-04-11T09:08:06,001 copying tests/app/__init__.py -> build/lib/tests/app 2023-04-11T09:08:06,004 copying tests/app/test_refined_inhibitory_neuron_densities.py -> build/lib/tests/app 2023-04-11T09:08:06,008 copying tests/app/test_combination.py -> build/lib/tests/app 2023-04-11T09:08:06,011 copying tests/app/test_cell_densities.py -> build/lib/tests/app 2023-04-11T09:08:06,017 creating build/lib/atlas_densities/combination 2023-04-11T09:08:06,019 copying atlas_densities/combination/__init__.py -> build/lib/atlas_densities/combination 2023-04-11T09:08:06,022 copying atlas_densities/combination/annotations_combinator.py -> build/lib/atlas_densities/combination 2023-04-11T09:08:06,026 copying atlas_densities/combination/markers_combinator.py -> build/lib/atlas_densities/combination 2023-04-11T09:08:06,033 creating build/lib/atlas_densities/densities 2023-04-11T09:08:06,035 copying atlas_densities/densities/inhibitory_neuron_densities_optimization.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,041 copying atlas_densities/densities/mtype_densities_from_composition.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,044 copying atlas_densities/densities/__init__.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,048 copying atlas_densities/densities/utils.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,053 copying atlas_densities/densities/cell_density.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,057 copying atlas_densities/densities/measurement_to_density.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,063 copying atlas_densities/densities/excitatory_inhibitory_splitting.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,067 copying atlas_densities/densities/fitting.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,073 copying atlas_densities/densities/excel_reader.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,079 copying atlas_densities/densities/refined_inhibitory_neuron_densities.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,084 copying atlas_densities/densities/inhibitory_neuron_density.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,089 copying atlas_densities/densities/glia_densities.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,093 copying atlas_densities/densities/mtype_densities_from_map.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,098 copying atlas_densities/densities/inhibitory_neuron_densities_helper.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,102 copying atlas_densities/densities/mtype_densities_from_profiles.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,107 copying atlas_densities/densities/cell_counts.py -> build/lib/atlas_densities/densities 2023-04-11T09:08:06,113 creating build/lib/atlas_densities/app 2023-04-11T09:08:06,115 copying atlas_densities/app/__init__.py -> build/lib/atlas_densities/app 2023-04-11T09:08:06,119 copying atlas_densities/app/mtype_densities.py -> build/lib/atlas_densities/app 2023-04-11T09:08:06,123 copying atlas_densities/app/cell_densities.py -> build/lib/atlas_densities/app 2023-04-11T09:08:06,129 copying atlas_densities/app/utils.py -> build/lib/atlas_densities/app 2023-04-11T09:08:06,132 copying atlas_densities/app/cli.py -> build/lib/atlas_densities/app 2023-04-11T09:08:06,136 copying atlas_densities/app/combination.py -> build/lib/atlas_densities/app 2023-04-11T09:08:06,142 creating build/lib/atlas_densities/app/data 2023-04-11T09:08:06,143 copying atlas_densities/app/data/__init__.py -> build/lib/atlas_densities/app/data 2023-04-11T09:08:06,146 running egg_info 2023-04-11T09:08:06,325 writing atlas_densities.egg-info/PKG-INFO 2023-04-11T09:08:06,330 writing dependency_links to atlas_densities.egg-info/dependency_links.txt 2023-04-11T09:08:06,333 writing entry points to atlas_densities.egg-info/entry_points.txt 2023-04-11T09:08:06,336 writing requirements to atlas_densities.egg-info/requires.txt 2023-04-11T09:08:06,338 writing top-level names to atlas_densities.egg-info/top_level.txt 2023-04-11T09:08:06,653 listing git files failed - pretending there aren't any 2023-04-11T09:08:06,672 reading manifest file 'atlas_densities.egg-info/SOURCES.txt' 2023-04-11T09:08:06,692 reading manifest template 'MANIFEST.in' 2023-04-11T09:08:06,756 adding license file 'LICENSE.txt' 2023-04-11T09:08:06,756 adding license file 'AUTHORS.txt' 2023-04-11T09:08:06,782 writing manifest file 'atlas_densities.egg-info/SOURCES.txt' 2023-04-11T09:08:06,789 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.markers' as data is deprecated, please list it in `packages`. 2023-04-11T09:08:06,790 !! 2023-04-11T09:08:06,791 ############################ 2023-04-11T09:08:06,791 # Package would be ignored # 2023-04-11T09:08:06,791 ############################ 2023-04-11T09:08:06,791 Python recognizes 'atlas_densities.app.data.markers' as an importable package, 2023-04-11T09:08:06,792 but it is not listed in the `packages` configuration of setuptools. 2023-04-11T09:08:06,792 'atlas_densities.app.data.markers' has been automatically added to the distribution only 2023-04-11T09:08:06,793 because it may contain data files, but this behavior is likely to change 2023-04-11T09:08:06,793 in future versions of setuptools (and therefore is considered deprecated). 2023-04-11T09:08:06,794 Please make sure that 'atlas_densities.app.data.markers' is included as a package by using 2023-04-11T09:08:06,794 the `packages` configuration field or the proper discovery methods 2023-04-11T09:08:06,794 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-11T09:08:06,795 instead of `find_packages(...)`/`find:`). 2023-04-11T09:08:06,795 You can read more about "package discovery" and "data files" on setuptools 2023-04-11T09:08:06,795 documentation page. 2023-04-11T09:08:06,796 !! 2023-04-11T09:08:06,797 check.warn(importable) 2023-04-11T09:08:06,797 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.measurements' as data is deprecated, please list it in `packages`. 2023-04-11T09:08:06,798 !! 2023-04-11T09:08:06,799 ############################ 2023-04-11T09:08:06,799 # Package would be ignored # 2023-04-11T09:08:06,799 ############################ 2023-04-11T09:08:06,799 Python recognizes 'atlas_densities.app.data.measurements' as an importable package, 2023-04-11T09:08:06,800 but it is not listed in the `packages` configuration of setuptools. 2023-04-11T09:08:06,800 'atlas_densities.app.data.measurements' has been automatically added to the distribution only 2023-04-11T09:08:06,801 because it may contain data files, but this behavior is likely to change 2023-04-11T09:08:06,801 in future versions of setuptools (and therefore is considered deprecated). 2023-04-11T09:08:06,802 Please make sure that 'atlas_densities.app.data.measurements' is included as a package by using 2023-04-11T09:08:06,802 the `packages` configuration field or the proper discovery methods 2023-04-11T09:08:06,802 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-11T09:08:06,802 instead of `find_packages(...)`/`find:`). 2023-04-11T09:08:06,803 You can read more about "package discovery" and "data files" on setuptools 2023-04-11T09:08:06,803 documentation page. 2023-04-11T09:08:06,804 !! 2023-04-11T09:08:06,805 check.warn(importable) 2023-04-11T09:08:06,805 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.metadata' as data is deprecated, please list it in `packages`. 2023-04-11T09:08:06,805 !! 2023-04-11T09:08:06,806 ############################ 2023-04-11T09:08:06,807 # Package would be ignored # 2023-04-11T09:08:06,807 ############################ 2023-04-11T09:08:06,807 Python recognizes 'atlas_densities.app.data.metadata' as an importable package, 2023-04-11T09:08:06,807 but it is not listed in the `packages` configuration of setuptools. 2023-04-11T09:08:06,808 'atlas_densities.app.data.metadata' has been automatically added to the distribution only 2023-04-11T09:08:06,808 because it may contain data files, but this behavior is likely to change 2023-04-11T09:08:06,809 in future versions of setuptools (and therefore is considered deprecated). 2023-04-11T09:08:06,809 Please make sure that 'atlas_densities.app.data.metadata' is included as a package by using 2023-04-11T09:08:06,809 the `packages` configuration field or the proper discovery methods 2023-04-11T09:08:06,810 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-11T09:08:06,810 instead of `find_packages(...)`/`find:`). 2023-04-11T09:08:06,811 You can read more about "package discovery" and "data files" on setuptools 2023-04-11T09:08:06,811 documentation page. 2023-04-11T09:08:06,812 !! 2023-04-11T09:08:06,812 check.warn(importable) 2023-04-11T09:08:06,813 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.mtypes' as data is deprecated, please list it in `packages`. 2023-04-11T09:08:06,813 !! 2023-04-11T09:08:06,814 ############################ 2023-04-11T09:08:06,814 # Package would be ignored # 2023-04-11T09:08:06,814 ############################ 2023-04-11T09:08:06,815 Python recognizes 'atlas_densities.app.data.mtypes' as an importable package, 2023-04-11T09:08:06,815 but it is not listed in the `packages` configuration of setuptools. 2023-04-11T09:08:06,816 'atlas_densities.app.data.mtypes' has been automatically added to the distribution only 2023-04-11T09:08:06,816 because it may contain data files, but this behavior is likely to change 2023-04-11T09:08:06,816 in future versions of setuptools (and therefore is considered deprecated). 2023-04-11T09:08:06,817 Please make sure that 'atlas_densities.app.data.mtypes' is included as a package by using 2023-04-11T09:08:06,817 the `packages` configuration field or the proper discovery methods 2023-04-11T09:08:06,817 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-11T09:08:06,818 instead of `find_packages(...)`/`find:`). 2023-04-11T09:08:06,818 You can read more about "package discovery" and "data files" on setuptools 2023-04-11T09:08:06,818 documentation page. 2023-04-11T09:08:06,819 !! 2023-04-11T09:08:06,820 check.warn(importable) 2023-04-11T09:08:06,820 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.mtypes.composition' as data is deprecated, please list it in `packages`. 2023-04-11T09:08:06,820 !! 2023-04-11T09:08:06,821 ############################ 2023-04-11T09:08:06,822 # Package would be ignored # 2023-04-11T09:08:06,822 ############################ 2023-04-11T09:08:06,822 Python recognizes 'atlas_densities.app.data.mtypes.composition' as an importable package, 2023-04-11T09:08:06,822 but it is not listed in the `packages` configuration of setuptools. 2023-04-11T09:08:06,823 'atlas_densities.app.data.mtypes.composition' has been automatically added to the distribution only 2023-04-11T09:08:06,823 because it may contain data files, but this behavior is likely to change 2023-04-11T09:08:06,824 in future versions of setuptools (and therefore is considered deprecated). 2023-04-11T09:08:06,824 Please make sure that 'atlas_densities.app.data.mtypes.composition' is included as a package by using 2023-04-11T09:08:06,825 the `packages` configuration field or the proper discovery methods 2023-04-11T09:08:06,825 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-11T09:08:06,825 instead of `find_packages(...)`/`find:`). 2023-04-11T09:08:06,826 You can read more about "package discovery" and "data files" on setuptools 2023-04-11T09:08:06,826 documentation page. 2023-04-11T09:08:06,827 !! 2023-04-11T09:08:06,827 check.warn(importable) 2023-04-11T09:08:06,828 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.mtypes.density_profiles' as data is deprecated, please list it in `packages`. 2023-04-11T09:08:06,828 !! 2023-04-11T09:08:06,829 ############################ 2023-04-11T09:08:06,829 # Package would be ignored # 2023-04-11T09:08:06,829 ############################ 2023-04-11T09:08:06,830 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles' as an importable package, 2023-04-11T09:08:06,830 but it is not listed in the `packages` configuration of setuptools. 2023-04-11T09:08:06,831 'atlas_densities.app.data.mtypes.density_profiles' has been automatically added to the distribution only 2023-04-11T09:08:06,831 because it may contain data files, but this behavior is likely to change 2023-04-11T09:08:06,831 in future versions of setuptools (and therefore is considered deprecated). 2023-04-11T09:08:06,832 Please make sure that 'atlas_densities.app.data.mtypes.density_profiles' is included as a package by using 2023-04-11T09:08:06,832 the `packages` configuration field or the proper discovery methods 2023-04-11T09:08:06,833 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-11T09:08:06,833 instead of `find_packages(...)`/`find:`). 2023-04-11T09:08:06,833 You can read more about "package discovery" and "data files" on setuptools 2023-04-11T09:08:06,834 documentation page. 2023-04-11T09:08:06,835 !! 2023-04-11T09:08:06,835 check.warn(importable) 2023-04-11T09:08:06,836 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.mtypes.density_profiles.meta' as data is deprecated, please list it in `packages`. 2023-04-11T09:08:06,836 !! 2023-04-11T09:08:06,837 ############################ 2023-04-11T09:08:06,837 # Package would be ignored # 2023-04-11T09:08:06,837 ############################ 2023-04-11T09:08:06,838 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles.meta' as an importable package, 2023-04-11T09:08:06,838 but it is not listed in the `packages` configuration of setuptools. 2023-04-11T09:08:06,839 'atlas_densities.app.data.mtypes.density_profiles.meta' has been automatically added to the distribution only 2023-04-11T09:08:06,839 because it may contain data files, but this behavior is likely to change 2023-04-11T09:08:06,839 in future versions of setuptools (and therefore is considered deprecated). 2023-04-11T09:08:06,840 Please make sure that 'atlas_densities.app.data.mtypes.density_profiles.meta' is included as a package by using 2023-04-11T09:08:06,840 the `packages` configuration field or the proper discovery methods 2023-04-11T09:08:06,840 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-11T09:08:06,841 instead of `find_packages(...)`/`find:`). 2023-04-11T09:08:06,841 You can read more about "package discovery" and "data files" on setuptools 2023-04-11T09:08:06,842 documentation page. 2023-04-11T09:08:06,843 !! 2023-04-11T09:08:06,845 check.warn(importable) 2023-04-11T09:08:06,845 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.mtypes.density_profiles.profiles' as data is deprecated, please list it in `packages`. 2023-04-11T09:08:06,846 !! 2023-04-11T09:08:06,851 ############################ 2023-04-11T09:08:06,851 # Package would be ignored # 2023-04-11T09:08:06,851 ############################ 2023-04-11T09:08:06,852 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles.profiles' as an importable package, 2023-04-11T09:08:06,852 but it is not listed in the `packages` configuration of setuptools. 2023-04-11T09:08:06,853 'atlas_densities.app.data.mtypes.density_profiles.profiles' has been automatically added to the distribution only 2023-04-11T09:08:06,853 because it may contain data files, but this behavior is likely to change 2023-04-11T09:08:06,853 in future versions of setuptools (and therefore is considered deprecated). 2023-04-11T09:08:06,854 Please make sure that 'atlas_densities.app.data.mtypes.density_profiles.profiles' is included as a package by using 2023-04-11T09:08:06,854 the `packages` configuration field or the proper discovery methods 2023-04-11T09:08:06,855 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-11T09:08:06,856 instead of `find_packages(...)`/`find:`). 2023-04-11T09:08:06,856 You can read more about "package discovery" and "data files" on setuptools 2023-04-11T09:08:06,857 documentation page. 2023-04-11T09:08:06,858 !! 2023-04-11T09:08:06,858 check.warn(importable) 2023-04-11T09:08:06,864 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'atlas_densities.app.data.mtypes.probability_map' as data is deprecated, please list it in `packages`. 2023-04-11T09:08:06,864 !! 2023-04-11T09:08:06,865 ############################ 2023-04-11T09:08:06,866 # Package would be ignored # 2023-04-11T09:08:06,866 ############################ 2023-04-11T09:08:06,866 Python recognizes 'atlas_densities.app.data.mtypes.probability_map' as an importable package, 2023-04-11T09:08:06,867 but it is not listed in the `packages` configuration of setuptools. 2023-04-11T09:08:06,867 'atlas_densities.app.data.mtypes.probability_map' has been automatically added to the distribution only 2023-04-11T09:08:06,868 because it may contain data files, but this behavior is likely to change 2023-04-11T09:08:06,868 in future versions of setuptools (and therefore is considered deprecated). 2023-04-11T09:08:06,869 Please make sure that 'atlas_densities.app.data.mtypes.probability_map' is included as a package by using 2023-04-11T09:08:06,869 the `packages` configuration field or the proper discovery methods 2023-04-11T09:08:06,869 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-11T09:08:06,870 instead of `find_packages(...)`/`find:`). 2023-04-11T09:08:06,870 You can read more about "package discovery" and "data files" on setuptools 2023-04-11T09:08:06,871 documentation page. 2023-04-11T09:08:06,872 !! 2023-04-11T09:08:06,872 check.warn(importable) 2023-04-11T09:08:06,872 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'tests.densities.data.meta' as data is deprecated, please list it in `packages`. 2023-04-11T09:08:06,873 !! 2023-04-11T09:08:06,874 ############################ 2023-04-11T09:08:06,874 # Package would be ignored # 2023-04-11T09:08:06,874 ############################ 2023-04-11T09:08:06,875 Python recognizes 'tests.densities.data.meta' as an importable package, 2023-04-11T09:08:06,875 but it is not listed in the `packages` configuration of setuptools. 2023-04-11T09:08:06,876 'tests.densities.data.meta' has been automatically added to the distribution only 2023-04-11T09:08:06,876 because it may contain data files, but this behavior is likely to change 2023-04-11T09:08:06,876 in future versions of setuptools (and therefore is considered deprecated). 2023-04-11T09:08:06,877 Please make sure that 'tests.densities.data.meta' is included as a package by using 2023-04-11T09:08:06,877 the `packages` configuration field or the proper discovery methods 2023-04-11T09:08:06,878 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-11T09:08:06,878 instead of `find_packages(...)`/`find:`). 2023-04-11T09:08:06,879 You can read more about "package discovery" and "data files" on setuptools 2023-04-11T09:08:06,879 documentation page. 2023-04-11T09:08:06,880 !! 2023-04-11T09:08:06,880 check.warn(importable) 2023-04-11T09:08:06,881 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'tests.densities.data.mtypes' as data is deprecated, please list it in `packages`. 2023-04-11T09:08:06,881 !! 2023-04-11T09:08:06,882 ############################ 2023-04-11T09:08:06,882 # Package would be ignored # 2023-04-11T09:08:06,883 ############################ 2023-04-11T09:08:06,883 Python recognizes 'tests.densities.data.mtypes' as an importable package, 2023-04-11T09:08:06,883 but it is not listed in the `packages` configuration of setuptools. 2023-04-11T09:08:06,884 'tests.densities.data.mtypes' has been automatically added to the distribution only 2023-04-11T09:08:06,884 because it may contain data files, but this behavior is likely to change 2023-04-11T09:08:06,885 in future versions of setuptools (and therefore is considered deprecated). 2023-04-11T09:08:06,885 Please make sure that 'tests.densities.data.mtypes' is included as a package by using 2023-04-11T09:08:06,886 the `packages` configuration field or the proper discovery methods 2023-04-11T09:08:06,886 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-11T09:08:06,886 instead of `find_packages(...)`/`find:`). 2023-04-11T09:08:06,887 You can read more about "package discovery" and "data files" on setuptools 2023-04-11T09:08:06,887 documentation page. 2023-04-11T09:08:06,888 !! 2023-04-11T09:08:06,889 check.warn(importable) 2023-04-11T09:08:06,889 copying tests/1.json -> build/lib/tests 2023-04-11T09:08:06,890 copying tests/markers_config.yaml -> build/lib/tests 2023-04-11T09:08:06,890 creating build/lib/tests/densities/data 2023-04-11T09:08:06,891 creating build/lib/tests/densities/data/meta 2023-04-11T09:08:06,891 copying tests/densities/data/meta/layers.tsv -> build/lib/tests/densities/data/meta 2023-04-11T09:08:06,891 copying tests/densities/data/meta/mapping.tsv -> build/lib/tests/densities/data/meta 2023-04-11T09:08:06,892 copying tests/densities/data/meta/mapping_exc_only.tsv -> build/lib/tests/densities/data/meta 2023-04-11T09:08:06,893 creating build/lib/tests/densities/data/mtypes 2023-04-11T09:08:06,896 copying tests/densities/data/mtypes/BP.dat -> build/lib/tests/densities/data/mtypes 2023-04-11T09:08:06,900 copying tests/densities/data/mtypes/L2_IPC.dat -> build/lib/tests/densities/data/mtypes 2023-04-11T09:08:06,905 copying tests/densities/data/mtypes/L2_TPC-A.dat -> build/lib/tests/densities/data/mtypes 2023-04-11T09:08:06,909 copying tests/densities/data/mtypes/L3_TPC-A.dat -> build/lib/tests/densities/data/mtypes 2023-04-11T09:08:06,913 copying tests/densities/data/mtypes/L3_TPC-B.dat -> build/lib/tests/densities/data/mtypes 2023-04-11T09:08:06,917 copying tests/densities/data/mtypes/mtype-taxonomy.tsv -> build/lib/tests/densities/data/mtypes 2023-04-11T09:08:06,922 copying atlas_densities/app/data/1.json -> build/lib/atlas_densities/app/data 2023-04-11T09:08:06,959 creating build/lib/atlas_densities/app/data/markers 2023-04-11T09:08:06,961 copying atlas_densities/app/data/markers/README.rst -> build/lib/atlas_densities/app/data/markers 2023-04-11T09:08:06,967 copying atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml -> build/lib/atlas_densities/app/data/markers 2023-04-11T09:08:06,972 copying atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml -> build/lib/atlas_densities/app/data/markers 2023-04-11T09:08:06,977 copying atlas_densities/app/data/markers/realigned_slices_bbp.json -> build/lib/atlas_densities/app/data/markers 2023-04-11T09:08:06,982 copying atlas_densities/app/data/markers/realigned_slices_ccfv2.json -> build/lib/atlas_densities/app/data/markers 2023-04-11T09:08:06,988 creating build/lib/atlas_densities/app/data/measurements 2023-04-11T09:08:06,990 copying atlas_densities/app/data/measurements/README.rst -> build/lib/atlas_densities/app/data/measurements 2023-04-11T09:08:06,994 copying atlas_densities/app/data/measurements/gaba_papers.xlsx -> build/lib/atlas_densities/app/data/measurements 2023-04-11T09:08:07,002 copying atlas_densities/app/data/measurements/homogenous_regions.csv -> build/lib/atlas_densities/app/data/measurements 2023-04-11T09:08:07,006 copying atlas_densities/app/data/measurements/measurements.csv -> build/lib/atlas_densities/app/data/measurements 2023-04-11T09:08:07,048 copying atlas_densities/app/data/measurements/mmc1.xlsx -> build/lib/atlas_densities/app/data/measurements 2023-04-11T09:08:07,071 copying atlas_densities/app/data/measurements/mmc3.xlsx -> build/lib/atlas_densities/app/data/measurements 2023-04-11T09:08:07,090 copying atlas_densities/app/data/measurements/non_density_measurements.csv -> build/lib/atlas_densities/app/data/measurements 2023-04-11T09:08:07,096 copying atlas_densities/app/data/measurements/std_cells.json -> build/lib/atlas_densities/app/data/measurements 2023-04-11T09:08:07,111 creating build/lib/atlas_densities/app/data/metadata 2023-04-11T09:08:07,114 copying atlas_densities/app/data/metadata/ca1_metadata.json -> build/lib/atlas_densities/app/data/metadata 2023-04-11T09:08:07,119 copying atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json -> build/lib/atlas_densities/app/data/metadata 2023-04-11T09:08:07,124 copying atlas_densities/app/data/metadata/isocortex_23_metadata.json -> build/lib/atlas_densities/app/data/metadata 2023-04-11T09:08:07,129 copying atlas_densities/app/data/metadata/isocortex_metadata.json -> build/lib/atlas_densities/app/data/metadata 2023-04-11T09:08:07,134 copying atlas_densities/app/data/metadata/metadata.json -> build/lib/atlas_densities/app/data/metadata 2023-04-11T09:08:07,139 copying atlas_densities/app/data/metadata/thalamus_metadata.json -> build/lib/atlas_densities/app/data/metadata 2023-04-11T09:08:07,143 creating build/lib/atlas_densities/app/data/mtypes 2023-04-11T09:08:07,146 copying atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv -> build/lib/atlas_densities/app/data/mtypes 2023-04-11T09:08:07,151 copying atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml -> build/lib/atlas_densities/app/data/mtypes 2023-04-11T09:08:07,156 creating build/lib/atlas_densities/app/data/mtypes/composition 2023-04-11T09:08:07,158 copying atlas_densities/app/data/mtypes/composition/README.rst -> build/lib/atlas_densities/app/data/mtypes/composition 2023-04-11T09:08:07,163 copying atlas_densities/app/data/mtypes/composition/composition.yaml -> build/lib/atlas_densities/app/data/mtypes/composition 2023-04-11T09:08:07,169 copying atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv -> build/lib/atlas_densities/app/data/mtypes/composition 2023-04-11T09:08:07,173 creating build/lib/atlas_densities/app/data/mtypes/density_profiles 2023-04-11T09:08:07,175 copying atlas_densities/app/data/mtypes/density_profiles/README.rst -> build/lib/atlas_densities/app/data/mtypes/density_profiles 2023-04-11T09:08:07,179 creating build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2023-04-11T09:08:07,181 copying atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv -> build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2023-04-11T09:08:07,186 copying atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv -> build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2023-04-11T09:08:07,190 creating build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,192 copying atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,196 copying atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,201 copying atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,205 copying atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,209 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,213 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,218 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,222 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,226 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,230 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,234 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,239 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,243 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,247 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,251 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,256 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,260 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,264 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,268 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,272 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,276 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,280 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,285 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,289 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,293 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,297 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,302 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,306 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,310 copying atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,314 copying atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,319 copying atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,323 copying atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,327 copying atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:07,331 creating build/lib/atlas_densities/app/data/mtypes/probability_map 2023-04-11T09:08:07,332 copying atlas_densities/app/data/mtypes/probability_map/README.rst -> build/lib/atlas_densities/app/data/mtypes/probability_map 2023-04-11T09:08:07,337 copying atlas_densities/app/data/mtypes/probability_map/probability_map.csv -> build/lib/atlas_densities/app/data/mtypes/probability_map 2023-04-11T09:08:07,458 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-04-11T09:08:07,459 setuptools.SetuptoolsDeprecationWarning, 2023-04-11T09:08:07,550 installing to build/bdist.linux-armv7l/wheel 2023-04-11T09:08:07,551 running install 2023-04-11T09:08:07,610 running install_lib 2023-04-11T09:08:07,703 creating build/bdist.linux-armv7l 2023-04-11T09:08:07,704 creating build/bdist.linux-armv7l/wheel 2023-04-11T09:08:07,708 creating build/bdist.linux-armv7l/wheel/tests 2023-04-11T09:08:07,710 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2023-04-11T09:08:07,713 copying build/lib/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/tests 2023-04-11T09:08:07,719 creating build/bdist.linux-armv7l/wheel/tests/combination 2023-04-11T09:08:07,721 copying build/lib/tests/combination/test_annotations_combinator.py -> build/bdist.linux-armv7l/wheel/tests/combination 2023-04-11T09:08:07,726 copying build/lib/tests/combination/__init__.py -> build/bdist.linux-armv7l/wheel/tests/combination 2023-04-11T09:08:07,729 copying build/lib/tests/combination/test_markers_combinator.py -> build/bdist.linux-armv7l/wheel/tests/combination 2023-04-11T09:08:07,734 creating build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,736 copying build/lib/tests/densities/test_inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,740 copying build/lib/tests/densities/test_cell_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,744 copying build/lib/tests/densities/__init__.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,747 copying build/lib/tests/densities/test_utils.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,751 copying build/lib/tests/densities/test_cell_counts.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,756 creating build/bdist.linux-armv7l/wheel/tests/densities/data 2023-04-11T09:08:07,759 creating build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2023-04-11T09:08:07,761 copying build/lib/tests/densities/data/meta/layers.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2023-04-11T09:08:07,765 copying build/lib/tests/densities/data/meta/mapping_exc_only.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2023-04-11T09:08:07,768 copying build/lib/tests/densities/data/meta/mapping.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2023-04-11T09:08:07,773 creating build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2023-04-11T09:08:07,775 copying build/lib/tests/densities/data/mtypes/BP.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2023-04-11T09:08:07,778 copying build/lib/tests/densities/data/mtypes/L2_IPC.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2023-04-11T09:08:07,782 copying build/lib/tests/densities/data/mtypes/mtype-taxonomy.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2023-04-11T09:08:07,785 copying build/lib/tests/densities/data/mtypes/L3_TPC-A.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2023-04-11T09:08:07,789 copying build/lib/tests/densities/data/mtypes/L3_TPC-B.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2023-04-11T09:08:07,792 copying build/lib/tests/densities/data/mtypes/L2_TPC-A.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2023-04-11T09:08:07,796 copying build/lib/tests/densities/test_inhibitory_neuron_density_optimization.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,800 copying build/lib/tests/densities/test_measurement_to_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,804 copying build/lib/tests/densities/test_inhibitory_neuron_densities_helper.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,808 copying build/lib/tests/densities/test_mtype_densities_from_map.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,812 copying build/lib/tests/densities/test_excitatory_inhibitory_splitting.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,817 copying build/lib/tests/densities/test_glia_densities.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,821 copying build/lib/tests/densities/test_fitting.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,825 copying build/lib/tests/densities/test_refined_inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,830 copying build/lib/tests/densities/test_excel_reader.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,835 copying build/lib/tests/densities/test_mtype_densities_from_profiles.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,839 copying build/lib/tests/densities/test_optimization_initialization.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,844 copying build/lib/tests/densities/test_mtype_densities_from_composition.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-04-11T09:08:07,849 creating build/bdist.linux-armv7l/wheel/tests/app 2023-04-11T09:08:07,851 copying build/lib/tests/app/test_mtype_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2023-04-11T09:08:07,856 copying build/lib/tests/app/__init__.py -> build/bdist.linux-armv7l/wheel/tests/app 2023-04-11T09:08:07,858 copying build/lib/tests/app/test_refined_inhibitory_neuron_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2023-04-11T09:08:07,862 copying build/lib/tests/app/test_combination.py -> build/bdist.linux-armv7l/wheel/tests/app 2023-04-11T09:08:07,866 copying build/lib/tests/app/test_cell_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2023-04-11T09:08:07,870 copying build/lib/tests/markers_config.yaml -> build/bdist.linux-armv7l/wheel/tests 2023-04-11T09:08:07,873 copying build/lib/tests/mocking_tools.py -> build/bdist.linux-armv7l/wheel/tests 2023-04-11T09:08:07,877 copying build/lib/tests/1.json -> build/bdist.linux-armv7l/wheel/tests 2023-04-11T09:08:07,915 creating build/bdist.linux-armv7l/wheel/atlas_densities 2023-04-11T09:08:07,917 copying build/lib/atlas_densities/version.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2023-04-11T09:08:07,920 copying build/lib/atlas_densities/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2023-04-11T09:08:07,924 copying build/lib/atlas_densities/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2023-04-11T09:08:07,930 creating build/bdist.linux-armv7l/wheel/atlas_densities/combination 2023-04-11T09:08:07,931 copying build/lib/atlas_densities/combination/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2023-04-11T09:08:07,934 copying build/lib/atlas_densities/combination/annotations_combinator.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2023-04-11T09:08:07,938 copying build/lib/atlas_densities/combination/markers_combinator.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2023-04-11T09:08:07,944 creating build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:07,946 copying build/lib/atlas_densities/densities/inhibitory_neuron_densities_optimization.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:07,952 copying build/lib/atlas_densities/densities/mtype_densities_from_composition.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:07,956 copying build/lib/atlas_densities/densities/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:07,959 copying build/lib/atlas_densities/densities/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:07,964 copying build/lib/atlas_densities/densities/cell_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:07,968 copying build/lib/atlas_densities/densities/measurement_to_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:07,973 copying build/lib/atlas_densities/densities/excitatory_inhibitory_splitting.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:07,977 copying build/lib/atlas_densities/densities/fitting.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:07,983 copying build/lib/atlas_densities/densities/excel_reader.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:07,988 copying build/lib/atlas_densities/densities/refined_inhibitory_neuron_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:07,994 copying build/lib/atlas_densities/densities/inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:07,999 copying build/lib/atlas_densities/densities/glia_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:08,003 copying build/lib/atlas_densities/densities/mtype_densities_from_map.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:08,007 copying build/lib/atlas_densities/densities/inhibitory_neuron_densities_helper.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:08,011 copying build/lib/atlas_densities/densities/mtype_densities_from_profiles.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:08,016 copying build/lib/atlas_densities/densities/cell_counts.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-04-11T09:08:08,022 creating build/bdist.linux-armv7l/wheel/atlas_densities/app 2023-04-11T09:08:08,025 copying build/lib/atlas_densities/app/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2023-04-11T09:08:08,029 copying build/lib/atlas_densities/app/mtype_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2023-04-11T09:08:08,036 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2023-04-11T09:08:08,039 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-04-11T09:08:08,042 copying build/lib/atlas_densities/app/data/measurements/gaba_papers.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-04-11T09:08:08,051 copying build/lib/atlas_densities/app/data/measurements/mmc3.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-04-11T09:08:08,071 copying build/lib/atlas_densities/app/data/measurements/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-04-11T09:08:08,075 copying build/lib/atlas_densities/app/data/measurements/mmc1.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-04-11T09:08:08,098 copying build/lib/atlas_densities/app/data/measurements/homogenous_regions.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-04-11T09:08:08,101 copying build/lib/atlas_densities/app/data/measurements/measurements.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-04-11T09:08:08,150 copying build/lib/atlas_densities/app/data/measurements/std_cells.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-04-11T09:08:08,164 copying build/lib/atlas_densities/app/data/measurements/non_density_measurements.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-04-11T09:08:08,168 copying build/lib/atlas_densities/app/data/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2023-04-11T09:08:08,172 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2023-04-11T09:08:08,174 copying build/lib/atlas_densities/app/data/markers/realigned_slices_ccfv2.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2023-04-11T09:08:08,178 copying build/lib/atlas_densities/app/data/markers/realigned_slices_bbp.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2023-04-11T09:08:08,182 copying build/lib/atlas_densities/app/data/markers/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2023-04-11T09:08:08,186 copying build/lib/atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2023-04-11T09:08:08,190 copying build/lib/atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2023-04-11T09:08:08,195 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-04-11T09:08:08,196 copying build/lib/atlas_densities/app/data/metadata/metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-04-11T09:08:08,200 copying build/lib/atlas_densities/app/data/metadata/isocortex_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-04-11T09:08:08,204 copying build/lib/atlas_densities/app/data/metadata/isocortex_23_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-04-11T09:08:08,207 copying build/lib/atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-04-11T09:08:08,211 copying build/lib/atlas_densities/app/data/metadata/ca1_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-04-11T09:08:08,215 copying build/lib/atlas_densities/app/data/metadata/thalamus_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-04-11T09:08:08,219 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2023-04-11T09:08:08,221 copying build/lib/atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2023-04-11T09:08:08,226 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2023-04-11T09:08:08,228 copying build/lib/atlas_densities/app/data/mtypes/probability_map/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2023-04-11T09:08:08,232 copying build/lib/atlas_densities/app/data/mtypes/probability_map/probability_map.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2023-04-11T09:08:08,238 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles 2023-04-11T09:08:08,240 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2023-04-11T09:08:08,242 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2023-04-11T09:08:08,246 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2023-04-11T09:08:08,250 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles 2023-04-11T09:08:08,255 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,257 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,261 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,265 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,268 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,272 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,276 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,280 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,283 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,287 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,290 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,294 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,298 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,301 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,305 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,308 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,312 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,316 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,319 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,323 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,326 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,330 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,334 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,338 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,341 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,345 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,349 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,353 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,356 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,360 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,364 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,368 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,371 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,375 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-04-11T09:08:08,379 copying build/lib/atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2023-04-11T09:08:08,384 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2023-04-11T09:08:08,385 copying build/lib/atlas_densities/app/data/mtypes/composition/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2023-04-11T09:08:08,389 copying build/lib/atlas_densities/app/data/mtypes/composition/composition.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2023-04-11T09:08:08,394 copying build/lib/atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2023-04-11T09:08:08,398 copying build/lib/atlas_densities/app/data/1.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2023-04-11T09:08:08,434 copying build/lib/atlas_densities/app/cell_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2023-04-11T09:08:08,441 copying build/lib/atlas_densities/app/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2023-04-11T09:08:08,444 copying build/lib/atlas_densities/app/cli.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2023-04-11T09:08:08,448 copying build/lib/atlas_densities/app/combination.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2023-04-11T09:08:08,452 copying build/lib/atlas_densities/exceptions.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2023-04-11T09:08:08,455 running install_egg_info 2023-04-11T09:08:08,547 Copying atlas_densities.egg-info to build/bdist.linux-armv7l/wheel/atlas_densities-0.1.4-py3.7.egg-info 2023-04-11T09:08:08,572 running install_scripts 2023-04-11T09:08:08,626 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2023-04-11T09:08:08,628 adding license file "AUTHORS.txt" (matched pattern "AUTHORS*") 2023-04-11T09:08:08,639 creating build/bdist.linux-armv7l/wheel/atlas_densities-0.1.4.dist-info/WHEEL 2023-04-11T09:08:08,644 creating '/tmp/pip-wheel-33owmbqi/atlas_densities-0.1.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-04-11T09:08:08,650 adding 'atlas_densities/__init__.py' 2023-04-11T09:08:08,652 adding 'atlas_densities/exceptions.py' 2023-04-11T09:08:08,657 adding 'atlas_densities/utils.py' 2023-04-11T09:08:08,659 adding 'atlas_densities/version.py' 2023-04-11T09:08:08,663 adding 'atlas_densities/app/__init__.py' 2023-04-11T09:08:08,675 adding 'atlas_densities/app/cell_densities.py' 2023-04-11T09:08:08,678 adding 'atlas_densities/app/cli.py' 2023-04-11T09:08:08,681 adding 'atlas_densities/app/combination.py' 2023-04-11T09:08:08,688 adding 'atlas_densities/app/mtype_densities.py' 2023-04-11T09:08:08,691 adding 'atlas_densities/app/utils.py' 2023-04-11T09:08:08,763 adding 'atlas_densities/app/data/1.json' 2023-04-11T09:08:08,778 adding 'atlas_densities/app/data/__init__.py' 2023-04-11T09:08:08,782 adding 'atlas_densities/app/data/markers/README.rst' 2023-04-11T09:08:08,785 adding 'atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml' 2023-04-11T09:08:08,788 adding 'atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml' 2023-04-11T09:08:08,791 adding 'atlas_densities/app/data/markers/realigned_slices_bbp.json' 2023-04-11T09:08:08,794 adding 'atlas_densities/app/data/markers/realigned_slices_ccfv2.json' 2023-04-11T09:08:08,798 adding 'atlas_densities/app/data/measurements/README.rst' 2023-04-11T09:08:08,813 adding 'atlas_densities/app/data/measurements/gaba_papers.xlsx' 2023-04-11T09:08:08,817 adding 'atlas_densities/app/data/measurements/homogenous_regions.csv' 2023-04-11T09:08:08,920 adding 'atlas_densities/app/data/measurements/measurements.csv' 2023-04-11T09:08:09,046 adding 'atlas_densities/app/data/measurements/mmc1.xlsx' 2023-04-11T09:08:09,152 adding 'atlas_densities/app/data/measurements/mmc3.xlsx' 2023-04-11T09:08:09,162 adding 'atlas_densities/app/data/measurements/non_density_measurements.csv' 2023-04-11T09:08:09,195 adding 'atlas_densities/app/data/measurements/std_cells.json' 2023-04-11T09:08:09,202 adding 'atlas_densities/app/data/metadata/ca1_metadata.json' 2023-04-11T09:08:09,205 adding 'atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json' 2023-04-11T09:08:09,208 adding 'atlas_densities/app/data/metadata/isocortex_23_metadata.json' 2023-04-11T09:08:09,210 adding 'atlas_densities/app/data/metadata/isocortex_metadata.json' 2023-04-11T09:08:09,213 adding 'atlas_densities/app/data/metadata/metadata.json' 2023-04-11T09:08:09,215 adding 'atlas_densities/app/data/metadata/thalamus_metadata.json' 2023-04-11T09:08:09,219 adding 'atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv' 2023-04-11T09:08:09,222 adding 'atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml' 2023-04-11T09:08:09,227 adding 'atlas_densities/app/data/mtypes/composition/README.rst' 2023-04-11T09:08:09,231 adding 'atlas_densities/app/data/mtypes/composition/composition.yaml' 2023-04-11T09:08:09,235 adding 'atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv' 2023-04-11T09:08:09,239 adding 'atlas_densities/app/data/mtypes/density_profiles/README.rst' 2023-04-11T09:08:09,243 adding 'atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv' 2023-04-11T09:08:09,245 adding 'atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv' 2023-04-11T09:08:09,250 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat' 2023-04-11T09:08:09,253 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat' 2023-04-11T09:08:09,255 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat' 2023-04-11T09:08:09,258 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat' 2023-04-11T09:08:09,260 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat' 2023-04-11T09:08:09,263 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat' 2023-04-11T09:08:09,266 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat' 2023-04-11T09:08:09,268 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat' 2023-04-11T09:08:09,270 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat' 2023-04-11T09:08:09,272 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat' 2023-04-11T09:08:09,275 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat' 2023-04-11T09:08:09,277 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat' 2023-04-11T09:08:09,280 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat' 2023-04-11T09:08:09,282 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat' 2023-04-11T09:08:09,285 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat' 2023-04-11T09:08:09,287 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat' 2023-04-11T09:08:09,290 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat' 2023-04-11T09:08:09,292 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat' 2023-04-11T09:08:09,295 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat' 2023-04-11T09:08:09,297 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat' 2023-04-11T09:08:09,300 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat' 2023-04-11T09:08:09,302 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat' 2023-04-11T09:08:09,305 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat' 2023-04-11T09:08:09,307 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat' 2023-04-11T09:08:09,310 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat' 2023-04-11T09:08:09,312 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat' 2023-04-11T09:08:09,315 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat' 2023-04-11T09:08:09,317 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat' 2023-04-11T09:08:09,320 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat' 2023-04-11T09:08:09,322 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat' 2023-04-11T09:08:09,325 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat' 2023-04-11T09:08:09,328 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat' 2023-04-11T09:08:09,330 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat' 2023-04-11T09:08:09,334 adding 'atlas_densities/app/data/mtypes/probability_map/README.rst' 2023-04-11T09:08:09,339 adding 'atlas_densities/app/data/mtypes/probability_map/probability_map.csv' 2023-04-11T09:08:09,343 adding 'atlas_densities/combination/__init__.py' 2023-04-11T09:08:09,347 adding 'atlas_densities/combination/annotations_combinator.py' 2023-04-11T09:08:09,350 adding 'atlas_densities/combination/markers_combinator.py' 2023-04-11T09:08:09,354 adding 'atlas_densities/densities/__init__.py' 2023-04-11T09:08:09,358 adding 'atlas_densities/densities/cell_counts.py' 2023-04-11T09:08:09,362 adding 'atlas_densities/densities/cell_density.py' 2023-04-11T09:08:09,369 adding 'atlas_densities/densities/excel_reader.py' 2023-04-11T09:08:09,373 adding 'atlas_densities/densities/excitatory_inhibitory_splitting.py' 2023-04-11T09:08:09,381 adding 'atlas_densities/densities/fitting.py' 2023-04-11T09:08:09,385 adding 'atlas_densities/densities/glia_densities.py' 2023-04-11T09:08:09,389 adding 'atlas_densities/densities/inhibitory_neuron_densities_helper.py' 2023-04-11T09:08:09,400 adding 'atlas_densities/densities/inhibitory_neuron_densities_optimization.py' 2023-04-11T09:08:09,404 adding 'atlas_densities/densities/inhibitory_neuron_density.py' 2023-04-11T09:08:09,410 adding 'atlas_densities/densities/measurement_to_density.py' 2023-04-11T09:08:09,413 adding 'atlas_densities/densities/mtype_densities_from_composition.py' 2023-04-11T09:08:09,418 adding 'atlas_densities/densities/mtype_densities_from_map.py' 2023-04-11T09:08:09,425 adding 'atlas_densities/densities/mtype_densities_from_profiles.py' 2023-04-11T09:08:09,432 adding 'atlas_densities/densities/refined_inhibitory_neuron_densities.py' 2023-04-11T09:08:09,440 adding 'atlas_densities/densities/utils.py' 2023-04-11T09:08:09,515 adding 'tests/1.json' 2023-04-11T09:08:09,531 adding 'tests/__init__.py' 2023-04-11T09:08:09,533 adding 'tests/markers_config.yaml' 2023-04-11T09:08:09,536 adding 'tests/mocking_tools.py' 2023-04-11T09:08:09,539 adding 'tests/test_utils.py' 2023-04-11T09:08:09,543 adding 'tests/app/__init__.py' 2023-04-11T09:08:09,548 adding 'tests/app/test_cell_densities.py' 2023-04-11T09:08:09,551 adding 'tests/app/test_combination.py' 2023-04-11T09:08:09,556 adding 'tests/app/test_mtype_densities.py' 2023-04-11T09:08:09,560 adding 'tests/app/test_refined_inhibitory_neuron_densities.py' 2023-04-11T09:08:09,563 adding 'tests/combination/__init__.py' 2023-04-11T09:08:09,567 adding 'tests/combination/test_annotations_combinator.py' 2023-04-11T09:08:09,570 adding 'tests/combination/test_markers_combinator.py' 2023-04-11T09:08:09,573 adding 'tests/densities/__init__.py' 2023-04-11T09:08:09,576 adding 'tests/densities/test_cell_counts.py' 2023-04-11T09:08:09,579 adding 'tests/densities/test_cell_density.py' 2023-04-11T09:08:09,584 adding 'tests/densities/test_excel_reader.py' 2023-04-11T09:08:09,587 adding 'tests/densities/test_excitatory_inhibitory_splitting.py' 2023-04-11T09:08:09,593 adding 'tests/densities/test_fitting.py' 2023-04-11T09:08:09,596 adding 'tests/densities/test_glia_densities.py' 2023-04-11T09:08:09,600 adding 'tests/densities/test_inhibitory_neuron_densities_helper.py' 2023-04-11T09:08:09,603 adding 'tests/densities/test_inhibitory_neuron_density.py' 2023-04-11T09:08:09,607 adding 'tests/densities/test_inhibitory_neuron_density_optimization.py' 2023-04-11T09:08:09,611 adding 'tests/densities/test_measurement_to_density.py' 2023-04-11T09:08:09,614 adding 'tests/densities/test_mtype_densities_from_composition.py' 2023-04-11T09:08:09,618 adding 'tests/densities/test_mtype_densities_from_map.py' 2023-04-11T09:08:09,621 adding 'tests/densities/test_mtype_densities_from_profiles.py' 2023-04-11T09:08:09,627 adding 'tests/densities/test_optimization_initialization.py' 2023-04-11T09:08:09,632 adding 'tests/densities/test_refined_inhibitory_neuron_density.py' 2023-04-11T09:08:09,636 adding 'tests/densities/test_utils.py' 2023-04-11T09:08:09,641 adding 'tests/densities/data/meta/layers.tsv' 2023-04-11T09:08:09,643 adding 'tests/densities/data/meta/mapping.tsv' 2023-04-11T09:08:09,645 adding 'tests/densities/data/meta/mapping_exc_only.tsv' 2023-04-11T09:08:09,649 adding 'tests/densities/data/mtypes/BP.dat' 2023-04-11T09:08:09,651 adding 'tests/densities/data/mtypes/L2_IPC.dat' 2023-04-11T09:08:09,653 adding 'tests/densities/data/mtypes/L2_TPC-A.dat' 2023-04-11T09:08:09,655 adding 'tests/densities/data/mtypes/L3_TPC-A.dat' 2023-04-11T09:08:09,658 adding 'tests/densities/data/mtypes/L3_TPC-B.dat' 2023-04-11T09:08:09,660 adding 'tests/densities/data/mtypes/mtype-taxonomy.tsv' 2023-04-11T09:08:09,662 adding 'atlas_densities-0.1.4.dist-info/AUTHORS.txt' 2023-04-11T09:08:09,667 adding 'atlas_densities-0.1.4.dist-info/LICENSE.txt' 2023-04-11T09:08:09,672 adding 'atlas_densities-0.1.4.dist-info/METADATA' 2023-04-11T09:08:09,675 adding 'atlas_densities-0.1.4.dist-info/WHEEL' 2023-04-11T09:08:09,676 adding 'atlas_densities-0.1.4.dist-info/entry_points.txt' 2023-04-11T09:08:09,678 adding 'atlas_densities-0.1.4.dist-info/top_level.txt' 2023-04-11T09:08:09,682 adding 'atlas_densities-0.1.4.dist-info/RECORD' 2023-04-11T09:08:09,728 removing build/bdist.linux-armv7l/wheel 2023-04-11T09:08:09,974 Building wheel for atlas-densities (setup.py): finished with status 'done' 2023-04-11T09:08:10,012 Created wheel for atlas-densities: filename=atlas_densities-0.1.4-py3-none-any.whl size=1053949 sha256=d4956925426510d1496ee873465e8178b2599c2fc5e1329503d8335ce50fd1c6 2023-04-11T09:08:10,014 Stored in directory: /tmp/pip-ephem-wheel-cache-47ueqv_z/wheels/0c/21/a8/fde32121b7e3c0f3c943ce44279b6048234c22b667f15d93a0 2023-04-11T09:08:10,058 Successfully built atlas-densities 2023-04-11T09:08:10,175 Removed build tracker: '/tmp/pip-build-tracker-vvmfa3mr'