2023-04-11T12:05:06,689 Created temporary directory: /tmp/pip-ephem-wheel-cache-qu7mzg_f 2023-04-11T12:05:06,694 Created temporary directory: /tmp/pip-build-tracker-v9f2m9p0 2023-04-11T12:05:06,695 Initialized build tracking at /tmp/pip-build-tracker-v9f2m9p0 2023-04-11T12:05:06,695 Created build tracker: /tmp/pip-build-tracker-v9f2m9p0 2023-04-11T12:05:06,696 Entered build tracker: /tmp/pip-build-tracker-v9f2m9p0 2023-04-11T12:05:06,697 Created temporary directory: /tmp/pip-wheel-xtyl232o 2023-04-11T12:05:06,707 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://files.pythonhosted.org/packages/20/98/e7b509e553beab965b2d85b5a49476951ec8fe6cd56f7b581c149db871ac/biobb_chemistry-4.0.0.tar.gz (from https://pypi.org/simple/biobb-chemistry/) (requires-python:>=3.7,<3.10), version: 4.0.0 2023-04-11T12:05:07,076 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-chemistry/ 2023-04-11T12:05:07,077 Getting page https://www.piwheels.org/simple/biobb-chemistry/ 2023-04-11T12:05:07,079 Found index url https://www.piwheels.org/simple 2023-04-11T12:05:07,291 Fetched page https://www.piwheels.org/simple/biobb-chemistry/ as text/html 2023-04-11T12:05:07,300 Skipping link: No binaries permitted for biobb-chemistry: https://www.piwheels.org/simple/biobb-chemistry/biobb_chemistry-3.9.0-py3-none-any.whl#sha256=5e6024b35db52fb7367bddceb044a5a74570e9d5e23a316664f75dd46cb9ab3f (from https://www.piwheels.org/simple/biobb-chemistry/) (requires-python:>=3.7,<3.10) 2023-04-11T12:05:07,300 Skipping link: No binaries permitted for biobb-chemistry: https://www.piwheels.org/simple/biobb-chemistry/biobb_chemistry-3.8.0-py3-none-any.whl#sha256=918b8354fb66b65f80e96fd1f992b9a817ebbb726aacd6226d84375986fb4461 (from https://www.piwheels.org/simple/biobb-chemistry/) (requires-python:>=3.7) 2023-04-11T12:05:07,301 Skipping link: No binaries permitted for biobb-chemistry: https://www.piwheels.org/simple/biobb-chemistry/biobb_chemistry-3.7.0-py3-none-any.whl#sha256=308f53d55dc7b763c246bcd8577248022c300597bda1388b013b7c7f051d72d9 (from https://www.piwheels.org/simple/biobb-chemistry/) (requires-python:==3.7.*) 2023-04-11T12:05:07,301 Skipping link: No binaries permitted for biobb-chemistry: https://www.piwheels.org/simple/biobb-chemistry/biobb_chemistry-3.6.0-py3-none-any.whl#sha256=50e9c93fd353baa2129bdf776a6c46b4426a182940202dc721a0493cf18bbfa1 (from https://www.piwheels.org/simple/biobb-chemistry/) (requires-python:==3.7.*) 2023-04-11T12:05:07,302 Skipping link: No binaries permitted for biobb-chemistry: https://www.piwheels.org/simple/biobb-chemistry/biobb_chemistry-3.5.0-py3-none-any.whl#sha256=b65b946cf89102fb4485b5e71188fc4f0c1cb9e416bb16097c158a8469cf1b6f (from https://www.piwheels.org/simple/biobb-chemistry/) (requires-python:==3.7.*) 2023-04-11T12:05:07,302 Skipping link: No binaries permitted for biobb-chemistry: https://www.piwheels.org/simple/biobb-chemistry/biobb_chemistry-3.0.2-py3-none-any.whl#sha256=37a884b1bca128bb8d932f564a473d44a9691a6d53cdc78eba34eebe11aace56 (from https://www.piwheels.org/simple/biobb-chemistry/) (requires-python:==3.7.*) 2023-04-11T12:05:07,303 Skipping link: No binaries permitted for biobb-chemistry: https://www.piwheels.org/simple/biobb-chemistry/biobb_chemistry-3.0.1-py3-none-any.whl#sha256=767260e022723e03bf21f94c4f18f5ecd4a26a3085083a989a0e4b20e8b3e466 (from https://www.piwheels.org/simple/biobb-chemistry/) (requires-python:==3.7.*) 2023-04-11T12:05:07,303 Skipping link: No binaries permitted for biobb-chemistry: https://www.piwheels.org/simple/biobb-chemistry/biobb_chemistry-3.0.0-py3-none-any.whl#sha256=7db835bd7488c6ec03a180caf8b8a656aa159529607303414c8d80eecae659e9 (from https://www.piwheels.org/simple/biobb-chemistry/) (requires-python:==3.7.*) 2023-04-11T12:05:07,304 Skipping link: not a file: https://www.piwheels.org/simple/biobb-chemistry/ 2023-04-11T12:05:07,304 Skipping link: not a file: https://pypi.org/simple/biobb-chemistry/ 2023-04-11T12:05:07,339 Given no hashes to check 1 links for project 'biobb-chemistry': discarding no candidates 2023-04-11T12:05:07,369 Collecting biobb-chemistry==4.0.0 2023-04-11T12:05:07,374 Created temporary directory: /tmp/pip-unpack-4x5a0e0e 2023-04-11T12:05:07,550 Downloading biobb_chemistry-4.0.0.tar.gz (21 kB) 2023-04-11T12:05:07,692 Added biobb-chemistry==4.0.0 from https://files.pythonhosted.org/packages/20/98/e7b509e553beab965b2d85b5a49476951ec8fe6cd56f7b581c149db871ac/biobb_chemistry-4.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-v9f2m9p0' 2023-04-11T12:05:07,694 Running setup.py (path:/tmp/pip-wheel-xtyl232o/biobb-chemistry_3942539458574225a700809740a76196/setup.py) egg_info for package biobb-chemistry 2023-04-11T12:05:07,696 Created temporary directory: /tmp/pip-pip-egg-info-vqwqk2yw 2023-04-11T12:05:07,696 Preparing metadata (setup.py): started 2023-04-11T12:05:07,698 Running command python setup.py egg_info 2023-04-11T12:05:08,965 Warning: 'classifiers' should be a list, got type 'tuple' 2023-04-11T12:05:09,223 running egg_info 2023-04-11T12:05:09,227 creating /tmp/pip-pip-egg-info-vqwqk2yw/biobb_chemistry.egg-info 2023-04-11T12:05:09,296 writing /tmp/pip-pip-egg-info-vqwqk2yw/biobb_chemistry.egg-info/PKG-INFO 2023-04-11T12:05:09,301 writing dependency_links to /tmp/pip-pip-egg-info-vqwqk2yw/biobb_chemistry.egg-info/dependency_links.txt 2023-04-11T12:05:09,306 writing entry points to /tmp/pip-pip-egg-info-vqwqk2yw/biobb_chemistry.egg-info/entry_points.txt 2023-04-11T12:05:09,309 writing requirements to /tmp/pip-pip-egg-info-vqwqk2yw/biobb_chemistry.egg-info/requires.txt 2023-04-11T12:05:09,311 writing top-level names to /tmp/pip-pip-egg-info-vqwqk2yw/biobb_chemistry.egg-info/top_level.txt 2023-04-11T12:05:09,313 writing manifest file '/tmp/pip-pip-egg-info-vqwqk2yw/biobb_chemistry.egg-info/SOURCES.txt' 2023-04-11T12:05:09,533 reading manifest file '/tmp/pip-pip-egg-info-vqwqk2yw/biobb_chemistry.egg-info/SOURCES.txt' 2023-04-11T12:05:09,536 adding license file 'LICENSE' 2023-04-11T12:05:09,543 writing manifest file '/tmp/pip-pip-egg-info-vqwqk2yw/biobb_chemistry.egg-info/SOURCES.txt' 2023-04-11T12:05:09,661 Preparing metadata (setup.py): finished with status 'done' 2023-04-11T12:05:09,674 Source in /tmp/pip-wheel-xtyl232o/biobb-chemistry_3942539458574225a700809740a76196 has version 4.0.0, which satisfies requirement biobb-chemistry==4.0.0 from https://files.pythonhosted.org/packages/20/98/e7b509e553beab965b2d85b5a49476951ec8fe6cd56f7b581c149db871ac/biobb_chemistry-4.0.0.tar.gz 2023-04-11T12:05:09,676 Removed biobb-chemistry==4.0.0 from https://files.pythonhosted.org/packages/20/98/e7b509e553beab965b2d85b5a49476951ec8fe6cd56f7b581c149db871ac/biobb_chemistry-4.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-v9f2m9p0' 2023-04-11T12:05:09,693 Created temporary directory: /tmp/pip-unpack-sljsxh0l 2023-04-11T12:05:09,694 Building wheels for collected packages: biobb-chemistry 2023-04-11T12:05:09,704 Created temporary directory: /tmp/pip-wheel-gx7brrvx 2023-04-11T12:05:09,704 Building wheel for biobb-chemistry (setup.py): started 2023-04-11T12:05:09,706 Destination directory: /tmp/pip-wheel-gx7brrvx 2023-04-11T12:05:09,707 Running command python setup.py bdist_wheel 2023-04-11T12:05:10,985 Warning: 'classifiers' should be a list, got type 'tuple' 2023-04-11T12:05:11,808 running bdist_wheel 2023-04-11T12:05:12,571 running build 2023-04-11T12:05:12,571 running build_py 2023-04-11T12:05:12,648 creating build 2023-04-11T12:05:12,649 creating build/lib 2023-04-11T12:05:12,650 creating build/lib/biobb_chemistry 2023-04-11T12:05:12,653 copying biobb_chemistry/__init__.py -> build/lib/biobb_chemistry 2023-04-11T12:05:12,658 creating build/lib/biobb_chemistry/ambertools 2023-04-11T12:05:12,660 copying biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/lib/biobb_chemistry/ambertools 2023-04-11T12:05:12,665 copying biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/lib/biobb_chemistry/ambertools 2023-04-11T12:05:12,670 copying biobb_chemistry/ambertools/common.py -> build/lib/biobb_chemistry/ambertools 2023-04-11T12:05:12,674 copying biobb_chemistry/ambertools/__init__.py -> build/lib/biobb_chemistry/ambertools 2023-04-11T12:05:12,679 creating build/lib/biobb_chemistry/babelm 2023-04-11T12:05:12,682 copying biobb_chemistry/babelm/common.py -> build/lib/biobb_chemistry/babelm 2023-04-11T12:05:12,686 copying biobb_chemistry/babelm/babel_minimize.py -> build/lib/biobb_chemistry/babelm 2023-04-11T12:05:12,692 copying biobb_chemistry/babelm/babel_add_hydrogens.py -> build/lib/biobb_chemistry/babelm 2023-04-11T12:05:12,697 copying biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/lib/biobb_chemistry/babelm 2023-04-11T12:05:12,702 copying biobb_chemistry/babelm/babel_convert.py -> build/lib/biobb_chemistry/babelm 2023-04-11T12:05:12,707 copying biobb_chemistry/babelm/__init__.py -> build/lib/biobb_chemistry/babelm 2023-04-11T12:05:12,712 creating build/lib/biobb_chemistry/test 2023-04-11T12:05:12,714 copying biobb_chemistry/test/__init__.py -> build/lib/biobb_chemistry/test 2023-04-11T12:05:12,720 creating build/lib/biobb_chemistry/acpype 2023-04-11T12:05:12,722 copying biobb_chemistry/acpype/common.py -> build/lib/biobb_chemistry/acpype 2023-04-11T12:05:12,727 copying biobb_chemistry/acpype/acpype_params_cns.py -> build/lib/biobb_chemistry/acpype 2023-04-11T12:05:12,733 copying biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/lib/biobb_chemistry/acpype 2023-04-11T12:05:12,738 copying biobb_chemistry/acpype/acpype_params_ac.py -> build/lib/biobb_chemistry/acpype 2023-04-11T12:05:12,743 copying biobb_chemistry/acpype/acpype_params_gmx.py -> build/lib/biobb_chemistry/acpype 2023-04-11T12:05:12,748 copying biobb_chemistry/acpype/__init__.py -> build/lib/biobb_chemistry/acpype 2023-04-11T12:05:12,839 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-04-11T12:05:12,840 setuptools.SetuptoolsDeprecationWarning, 2023-04-11T12:05:12,911 installing to build/bdist.linux-armv7l/wheel 2023-04-11T12:05:12,912 running install 2023-04-11T12:05:12,972 running install_lib 2023-04-11T12:05:13,044 creating build/bdist.linux-armv7l 2023-04-11T12:05:13,045 creating build/bdist.linux-armv7l/wheel 2023-04-11T12:05:13,049 creating build/bdist.linux-armv7l/wheel/biobb_chemistry 2023-04-11T12:05:13,052 creating build/bdist.linux-armv7l/wheel/biobb_chemistry/ambertools 2023-04-11T12:05:13,054 copying build/lib/biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/ambertools 2023-04-11T12:05:13,059 copying build/lib/biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/ambertools 2023-04-11T12:05:13,063 copying build/lib/biobb_chemistry/ambertools/common.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/ambertools 2023-04-11T12:05:13,067 copying build/lib/biobb_chemistry/ambertools/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/ambertools 2023-04-11T12:05:13,072 creating build/bdist.linux-armv7l/wheel/biobb_chemistry/babelm 2023-04-11T12:05:13,075 copying build/lib/biobb_chemistry/babelm/common.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/babelm 2023-04-11T12:05:13,080 copying build/lib/biobb_chemistry/babelm/babel_minimize.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/babelm 2023-04-11T12:05:13,085 copying build/lib/biobb_chemistry/babelm/babel_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/babelm 2023-04-11T12:05:13,090 copying build/lib/biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/babelm 2023-04-11T12:05:13,095 copying build/lib/biobb_chemistry/babelm/babel_convert.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/babelm 2023-04-11T12:05:13,101 copying build/lib/biobb_chemistry/babelm/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/babelm 2023-04-11T12:05:13,106 creating build/bdist.linux-armv7l/wheel/biobb_chemistry/test 2023-04-11T12:05:13,108 copying build/lib/biobb_chemistry/test/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/test 2023-04-11T12:05:13,112 copying build/lib/biobb_chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry 2023-04-11T12:05:13,117 creating build/bdist.linux-armv7l/wheel/biobb_chemistry/acpype 2023-04-11T12:05:13,119 copying build/lib/biobb_chemistry/acpype/common.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/acpype 2023-04-11T12:05:13,124 copying build/lib/biobb_chemistry/acpype/acpype_params_cns.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/acpype 2023-04-11T12:05:13,128 copying build/lib/biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/acpype 2023-04-11T12:05:13,132 copying build/lib/biobb_chemistry/acpype/acpype_params_ac.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/acpype 2023-04-11T12:05:13,136 copying build/lib/biobb_chemistry/acpype/acpype_params_gmx.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/acpype 2023-04-11T12:05:13,140 copying build/lib/biobb_chemistry/acpype/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/acpype 2023-04-11T12:05:13,143 running install_egg_info 2023-04-11T12:05:13,309 running egg_info 2023-04-11T12:05:13,376 writing biobb_chemistry.egg-info/PKG-INFO 2023-04-11T12:05:13,380 writing dependency_links to biobb_chemistry.egg-info/dependency_links.txt 2023-04-11T12:05:13,385 writing entry points to biobb_chemistry.egg-info/entry_points.txt 2023-04-11T12:05:13,387 writing requirements to biobb_chemistry.egg-info/requires.txt 2023-04-11T12:05:13,390 writing top-level names to biobb_chemistry.egg-info/top_level.txt 2023-04-11T12:05:13,468 reading manifest file 'biobb_chemistry.egg-info/SOURCES.txt' 2023-04-11T12:05:13,473 adding license file 'LICENSE' 2023-04-11T12:05:13,480 writing manifest file 'biobb_chemistry.egg-info/SOURCES.txt' 2023-04-11T12:05:13,483 Copying biobb_chemistry.egg-info to build/bdist.linux-armv7l/wheel/biobb_chemistry-4.0.0-py3.7.egg-info 2023-04-11T12:05:13,505 running install_scripts 2023-04-11T12:05:13,538 creating build/bdist.linux-armv7l/wheel/biobb_chemistry-4.0.0.dist-info/WHEEL 2023-04-11T12:05:13,543 creating '/tmp/pip-wheel-gx7brrvx/biobb_chemistry-4.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-04-11T12:05:13,547 adding 'biobb_chemistry/__init__.py' 2023-04-11T12:05:13,551 adding 'biobb_chemistry/acpype/__init__.py' 2023-04-11T12:05:13,555 adding 'biobb_chemistry/acpype/acpype_params_ac.py' 2023-04-11T12:05:13,559 adding 'biobb_chemistry/acpype/acpype_params_cns.py' 2023-04-11T12:05:13,564 adding 'biobb_chemistry/acpype/acpype_params_gmx.py' 2023-04-11T12:05:13,568 adding 'biobb_chemistry/acpype/acpype_params_gmx_opls.py' 2023-04-11T12:05:13,571 adding 'biobb_chemistry/acpype/common.py' 2023-04-11T12:05:13,575 adding 'biobb_chemistry/ambertools/__init__.py' 2023-04-11T12:05:13,577 adding 'biobb_chemistry/ambertools/common.py' 2023-04-11T12:05:13,582 adding 'biobb_chemistry/ambertools/reduce_add_hydrogens.py' 2023-04-11T12:05:13,586 adding 'biobb_chemistry/ambertools/reduce_remove_hydrogens.py' 2023-04-11T12:05:13,590 adding 'biobb_chemistry/babelm/__init__.py' 2023-04-11T12:05:13,594 adding 'biobb_chemistry/babelm/babel_add_hydrogens.py' 2023-04-11T12:05:13,598 adding 'biobb_chemistry/babelm/babel_convert.py' 2023-04-11T12:05:13,603 adding 'biobb_chemistry/babelm/babel_minimize.py' 2023-04-11T12:05:13,607 adding 'biobb_chemistry/babelm/babel_remove_hydrogens.py' 2023-04-11T12:05:13,610 adding 'biobb_chemistry/babelm/common.py' 2023-04-11T12:05:13,614 adding 'biobb_chemistry/test/__init__.py' 2023-04-11T12:05:13,621 adding 'biobb_chemistry-4.0.0.dist-info/LICENSE' 2023-04-11T12:05:13,624 adding 'biobb_chemistry-4.0.0.dist-info/METADATA' 2023-04-11T12:05:13,630 adding 'biobb_chemistry-4.0.0.dist-info/WHEEL' 2023-04-11T12:05:13,632 adding 'biobb_chemistry-4.0.0.dist-info/entry_points.txt' 2023-04-11T12:05:13,634 adding 'biobb_chemistry-4.0.0.dist-info/top_level.txt' 2023-04-11T12:05:13,636 adding 'biobb_chemistry-4.0.0.dist-info/RECORD' 2023-04-11T12:05:13,640 removing build/bdist.linux-armv7l/wheel 2023-04-11T12:05:13,824 Building wheel for biobb-chemistry (setup.py): finished with status 'done' 2023-04-11T12:05:13,834 Created wheel for biobb-chemistry: filename=biobb_chemistry-4.0.0-py3-none-any.whl size=44502 sha256=35c9067b702778316368ef962f10fde2ef48c3ef116e06469107d33af03879b8 2023-04-11T12:05:13,837 Stored in directory: /tmp/pip-ephem-wheel-cache-55e5atg0/wheels/1c/f7/37/bf30ef7e1cec879944a2f410e5eeda053feace71a313e2f94b 2023-04-11T12:05:13,865 Successfully built biobb-chemistry 2023-04-11T12:05:13,875 Removed build tracker: '/tmp/pip-build-tracker-v9f2m9p0'