2023-04-11T22:27:00,389 Created temporary directory: /tmp/pip-ephem-wheel-cache-5brzqxy0 2023-04-11T22:27:00,395 Created temporary directory: /tmp/pip-build-tracker-b4lz9ak1 2023-04-11T22:27:00,396 Initialized build tracking at /tmp/pip-build-tracker-b4lz9ak1 2023-04-11T22:27:00,396 Created build tracker: /tmp/pip-build-tracker-b4lz9ak1 2023-04-11T22:27:00,397 Entered build tracker: /tmp/pip-build-tracker-b4lz9ak1 2023-04-11T22:27:00,398 Created temporary directory: /tmp/pip-wheel-h4x6pce3 2023-04-11T22:27:00,408 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-04-11T22:27:00,414 Created temporary directory: /tmp/pip-ephem-wheel-cache-ujwrhrok 2023-04-11T22:27:00,468 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-04-11T22:27:00,475 2 location(s) to search for versions of funannotate: 2023-04-11T22:27:00,475 * https://pypi.org/simple/funannotate/ 2023-04-11T22:27:00,475 * https://www.piwheels.org/simple/funannotate/ 2023-04-11T22:27:00,476 Fetching project page and analyzing links: https://pypi.org/simple/funannotate/ 2023-04-11T22:27:00,477 Getting page https://pypi.org/simple/funannotate/ 2023-04-11T22:27:00,481 Found index url https://pypi.org/simple 2023-04-11T22:27:00,718 Fetched page https://pypi.org/simple/funannotate/ as application/vnd.pypi.simple.v1+json 2023-04-11T22:27:00,733 Skipping link: No binaries permitted for funannotate: https://files.pythonhosted.org/packages/c9/8d/7d6f3ac96684c786f2dca70902675c1526b943586d93c274f2c1544eb254/funannotate-1.7.0-py2.py3-none-any.whl (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, <3) 2023-04-11T22:27:00,734 Link requires a different Python (3.7.3 not in: '>=2.7.0, <3'): https://files.pythonhosted.org/packages/82/19/16a044299d0e5ae7f0f5bdc9d3e966b6a99eed2a5ad004cf4d64478b0a59/funannotate-1.7.0.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, <3) 2023-04-11T22:27:00,735 Skipping link: 1.7.0 Requires-Python >=2.7.0, <3: https://files.pythonhosted.org/packages/82/19/16a044299d0e5ae7f0f5bdc9d3e966b6a99eed2a5ad004cf4d64478b0a59/funannotate-1.7.0.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, <3) 2023-04-11T22:27:00,735 Skipping link: No binaries permitted for funannotate: https://files.pythonhosted.org/packages/65/58/c7195ce3515b0b4442d63c1e417bce97fd55dc512405d737ae475f4e020f/funannotate-1.7.1-py2.py3-none-any.whl (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, <3) 2023-04-11T22:27:00,737 Link requires a different Python (3.7.3 not in: '>=2.7.0, <3'): https://files.pythonhosted.org/packages/6a/fd/0e2380e13baa566c83ff90a6168df9f6caaf85f4d43df6a10d29b6c6cd7e/funannotate-1.7.1.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, <3) 2023-04-11T22:27:00,737 Skipping link: 1.7.1 Requires-Python >=2.7.0, <3: https://files.pythonhosted.org/packages/6a/fd/0e2380e13baa566c83ff90a6168df9f6caaf85f4d43df6a10d29b6c6cd7e/funannotate-1.7.1.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, <3) 2023-04-11T22:27:00,738 Skipping link: No binaries permitted for funannotate: https://files.pythonhosted.org/packages/9b/74/9e62526f72840a41add434ed5ff9f3adf30ea0bdbcd37c0298db816cd0a6/funannotate-1.7.2-py2.py3-none-any.whl (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, <3) 2023-04-11T22:27:00,739 Link requires a different Python (3.7.3 not in: '>=2.7.0, <3'): https://files.pythonhosted.org/packages/f1/89/473471b2d969166612963b032b004c192ff16c924198e0318448c9d5b166/funannotate-1.7.2.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, <3) 2023-04-11T22:27:00,740 Skipping link: 1.7.2 Requires-Python >=2.7.0, <3: https://files.pythonhosted.org/packages/f1/89/473471b2d969166612963b032b004c192ff16c924198e0318448c9d5b166/funannotate-1.7.2.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, <3) 2023-04-11T22:27:00,740 Skipping link: No binaries permitted for funannotate: https://files.pythonhosted.org/packages/f0/f2/9e5c20255ae4846c0ba77cd1486b0337ad407c49dc3f04f4c58af8e99689/funannotate-1.7.3-py2.py3-none-any.whl (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, <3) 2023-04-11T22:27:00,742 Link requires a different Python (3.7.3 not in: '>=2.7.0, <3'): https://files.pythonhosted.org/packages/cb/b0/aa1deef2eef5f0385575e2e00da6c5073dcb38c77fbe344040c84965b044/funannotate-1.7.3.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, <3) 2023-04-11T22:27:00,742 Skipping link: 1.7.3 Requires-Python >=2.7.0, <3: https://files.pythonhosted.org/packages/cb/b0/aa1deef2eef5f0385575e2e00da6c5073dcb38c77fbe344040c84965b044/funannotate-1.7.3.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, <3) 2023-04-11T22:27:00,743 Skipping link: No binaries permitted for funannotate: https://files.pythonhosted.org/packages/1e/d9/24ef671e14abdda21fc8eed5304bbd50097b3c3ee36e6740aa16d9f862b1/funannotate-1.7.4-py2.py3-none-any.whl (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, <3) 2023-04-11T22:27:00,744 Link requires a different Python (3.7.3 not in: '>=2.7.0, <3'): https://files.pythonhosted.org/packages/14/52/8c151d871b7a402a7429829c98e9f1f17d63f55d10f2cbf50d043b6ca19f/funannotate-1.7.4.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, <3) 2023-04-11T22:27:00,745 Skipping link: 1.7.4 Requires-Python >=2.7.0, <3: https://files.pythonhosted.org/packages/14/52/8c151d871b7a402a7429829c98e9f1f17d63f55d10f2cbf50d043b6ca19f/funannotate-1.7.4.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, <3) 2023-04-11T22:27:00,745 Skipping link: No binaries permitted for funannotate: https://files.pythonhosted.org/packages/fa/9b/7ab195d33d62835b1014cbc84c9c411cbb105cabb6dc27655e00785585fe/funannotate-1.8.1-py2.py3-none-any.whl (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4) 2023-04-11T22:27:00,748 Found link https://files.pythonhosted.org/packages/d8/8d/b2b8e37805837ac3a29338f950c052320f4cf06c4ddac50722441897ae84/funannotate-1.8.1.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4), version: 1.8.1 2023-04-11T22:27:00,749 Skipping link: No binaries permitted for funannotate: https://files.pythonhosted.org/packages/49/a7/140719eb61b47ac12d50df37ea8e82affa4132f586aee5b5188be62d979c/funannotate-1.8.3-py2.py3-none-any.whl (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4) 2023-04-11T22:27:00,751 Found link https://files.pythonhosted.org/packages/44/bb/70ee791e4f81377915935c1abc118ec14e00ce79ed3b3abb5cf924ccd2c2/funannotate-1.8.3.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4), version: 1.8.3 2023-04-11T22:27:00,752 Skipping link: No binaries permitted for funannotate: https://files.pythonhosted.org/packages/b6/5c/45c7fd0e67ac8468c6321ab612cba5108ecbd633b3e34d869c3a18152a9e/funannotate-1.8.5-py3-none-any.whl (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4) 2023-04-11T22:27:00,755 Found link https://files.pythonhosted.org/packages/66/8c/a0a783f8d21cb6a05000390fdff8e19282484d940d1af5002c191b19023f/funannotate-1.8.5.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4), version: 1.8.5 2023-04-11T22:27:00,755 Skipping link: No binaries permitted for funannotate: https://files.pythonhosted.org/packages/bf/51/e33e6aa2aff6e98f3520377838a00383840584d28decc23d0d21f6f22927/funannotate-1.8.7-py3-none-any.whl (from https://pypi.org/simple/funannotate/) (requires-python:>=3.6.0, <3.9) 2023-04-11T22:27:00,757 Found link https://files.pythonhosted.org/packages/17/79/37b08c79eba35cea7873315f59d439b226c3c97ca56215696ec3f3d8ba4e/funannotate-1.8.7.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=3.6.0, <3.9), version: 1.8.7 2023-04-11T22:27:00,758 Skipping link: No binaries permitted for funannotate: https://files.pythonhosted.org/packages/4f/14/74e79d16bdfadb4541aaf332a799bc9352a3575f6d7a5c9d88dcbb0f27fd/funannotate-1.8.9-py3-none-any.whl (from https://pypi.org/simple/funannotate/) (requires-python:>=3.6.0, <3.9) 2023-04-11T22:27:00,760 Found link https://files.pythonhosted.org/packages/fe/24/9d6c5949bb2c5c3382a0a9549845bf7d28cec6c34054f71daba5bde22a6e/funannotate-1.8.9.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=3.6.0, <3.9), version: 1.8.9 2023-04-11T22:27:00,760 Skipping link: No binaries permitted for funannotate: https://files.pythonhosted.org/packages/3f/64/f68ed074713610343c780787bd8aed8016a47e76558290bf7a1d1606f81a/funannotate-1.8.11-py3-none-any.whl (from https://pypi.org/simple/funannotate/) (requires-python:>=3.6.0, <3.10) 2023-04-11T22:27:00,762 Found link https://files.pythonhosted.org/packages/d4/8e/515c995044e6f11f4ccc7b951a344e45701c5fbaff91b2bd60f303497636/funannotate-1.8.11.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=3.6.0, <3.10), version: 1.8.11 2023-04-11T22:27:00,763 Skipping link: No binaries permitted for funannotate: https://files.pythonhosted.org/packages/d3/6f/9546c721cb5cd6c0a997b54a46c539a44816954cfec3444781e8b8e0cbe1/funannotate-1.8.13-py3-none-any.whl (from https://pypi.org/simple/funannotate/) (requires-python:>=3.6.0, <3.10) 2023-04-11T22:27:00,764 Found link https://files.pythonhosted.org/packages/fd/22/c45a56220c5f83707794e6429051b44a5296fb9cb868ef6d2974ae7a3f3c/funannotate-1.8.13.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=3.6.0, <3.10), version: 1.8.13 2023-04-11T22:27:00,765 Skipping link: No binaries permitted for funannotate: https://files.pythonhosted.org/packages/e7/c1/7ac7bdfb9962f47679d4b8a70e9d7e1c8371dbae8d819c57834eea16636d/funannotate-1.8.15-py3-none-any.whl (from https://pypi.org/simple/funannotate/) (requires-python:>=3.6.0, <3.10) 2023-04-11T22:27:00,767 Found link https://files.pythonhosted.org/packages/64/2a/ba75c916f152dbcada5675013cff161a85e96b358b50a592fd24c9bf6cee/funannotate-1.8.15.tar.gz (from https://pypi.org/simple/funannotate/) (requires-python:>=3.6.0, <3.10), version: 1.8.15 2023-04-11T22:27:00,768 Fetching project page and analyzing links: https://www.piwheels.org/simple/funannotate/ 2023-04-11T22:27:00,768 Getting page https://www.piwheels.org/simple/funannotate/ 2023-04-11T22:27:00,770 Found index url https://www.piwheels.org/simple 2023-04-11T22:27:01,030 Fetched page https://www.piwheels.org/simple/funannotate/ as text/html 2023-04-11T22:27:01,038 Skipping link: No binaries permitted for funannotate: https://www.piwheels.org/simple/funannotate/funannotate-1.8.13-py3-none-any.whl#sha256=233147a319c6c165b07b3c5327b706cf98f038e313cb4a537c9cd84d5143101c (from https://www.piwheels.org/simple/funannotate/) (requires-python:>=3.6.0, <3.10) 2023-04-11T22:27:01,038 Skipping link: No binaries permitted for funannotate: https://www.piwheels.org/simple/funannotate/funannotate-1.8.11-py3-none-any.whl#sha256=2f5e1f30ad5cf7a1ccc61165ff6a31e4dfa70bdf8a17364f1b11a9c3c34dc4dd (from https://www.piwheels.org/simple/funannotate/) (requires-python:>=3.6.0, <3.10) 2023-04-11T22:27:01,039 Skipping link: No binaries permitted for funannotate: https://www.piwheels.org/simple/funannotate/funannotate-1.8.9-py3-none-any.whl#sha256=e43ddc7b2031a1aa724848742bc45a80e59b9c6c6f7da65c29aa6bd95e9247a0 (from https://www.piwheels.org/simple/funannotate/) (requires-python:>=3.6.0, <3.9) 2023-04-11T22:27:01,040 Skipping link: No binaries permitted for funannotate: https://www.piwheels.org/simple/funannotate/funannotate-1.8.7-py3-none-any.whl#sha256=ccace79ee27eec6daa8a564e34d753ea047c4e39f3605391e06622cc6c486d7c (from https://www.piwheels.org/simple/funannotate/) (requires-python:>=3.6.0, <3.9) 2023-04-11T22:27:01,040 Skipping link: No binaries permitted for funannotate: https://www.piwheels.org/simple/funannotate/funannotate-1.8.5-py3-none-any.whl#sha256=eeecff5014f4dbe8c91fe2b85cc437560fbc49b3a40773ce88f720f7a7ad3bb5 (from https://www.piwheels.org/simple/funannotate/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4) 2023-04-11T22:27:01,041 Skipping link: No binaries permitted for funannotate: https://www.piwheels.org/simple/funannotate/funannotate-1.8.3-py2.py3-none-any.whl#sha256=587d4e06ffafcad8cd3bb8978bdc329ae44ac7cbf5eaaa47fb3454364446e095 (from https://www.piwheels.org/simple/funannotate/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4) 2023-04-11T22:27:01,041 Skipping link: No binaries permitted for funannotate: https://www.piwheels.org/simple/funannotate/funannotate-1.8.1-py2.py3-none-any.whl#sha256=442d13e5c3b2c41a1dcee046a2b84cdfe1f6e511b9f0ffeb50fdcc0e7323bbaa (from https://www.piwheels.org/simple/funannotate/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4) 2023-04-11T22:27:01,042 Skipping link: not a file: https://www.piwheels.org/simple/funannotate/ 2023-04-11T22:27:01,042 Skipping link: not a file: https://pypi.org/simple/funannotate/ 2023-04-11T22:27:01,078 Given no hashes to check 1 links for project 'funannotate': discarding no candidates 2023-04-11T22:27:01,108 Collecting funannotate==1.8.15 2023-04-11T22:27:01,112 Created temporary directory: /tmp/pip-unpack-2s_pl8u9 2023-04-11T22:27:01,289 Downloading funannotate-1.8.15.tar.gz (514 kB) 2023-04-11T22:27:02,119 Added funannotate==1.8.15 from https://files.pythonhosted.org/packages/64/2a/ba75c916f152dbcada5675013cff161a85e96b358b50a592fd24c9bf6cee/funannotate-1.8.15.tar.gz to build tracker '/tmp/pip-build-tracker-b4lz9ak1' 2023-04-11T22:27:02,122 Running setup.py (path:/tmp/pip-wheel-h4x6pce3/funannotate_09d20e531e96486386169251ecaed914/setup.py) egg_info for package funannotate 2023-04-11T22:27:02,123 Created temporary directory: /tmp/pip-pip-egg-info-hxs_jp3t 2023-04-11T22:27:02,124 Preparing metadata (setup.py): started 2023-04-11T22:27:02,126 Running command python setup.py egg_info 2023-04-11T22:27:03,780 running egg_info 2023-04-11T22:27:03,783 creating /tmp/pip-pip-egg-info-hxs_jp3t/funannotate.egg-info 2023-04-11T22:27:03,877 writing /tmp/pip-pip-egg-info-hxs_jp3t/funannotate.egg-info/PKG-INFO 2023-04-11T22:27:03,882 writing dependency_links to /tmp/pip-pip-egg-info-hxs_jp3t/funannotate.egg-info/dependency_links.txt 2023-04-11T22:27:03,885 writing entry points to /tmp/pip-pip-egg-info-hxs_jp3t/funannotate.egg-info/entry_points.txt 2023-04-11T22:27:03,888 writing requirements to /tmp/pip-pip-egg-info-hxs_jp3t/funannotate.egg-info/requires.txt 2023-04-11T22:27:03,890 writing top-level names to /tmp/pip-pip-egg-info-hxs_jp3t/funannotate.egg-info/top_level.txt 2023-04-11T22:27:03,893 writing manifest file '/tmp/pip-pip-egg-info-hxs_jp3t/funannotate.egg-info/SOURCES.txt' 2023-04-11T22:27:04,193 reading manifest file '/tmp/pip-pip-egg-info-hxs_jp3t/funannotate.egg-info/SOURCES.txt' 2023-04-11T22:27:04,197 reading manifest template 'MANIFEST.in' 2023-04-11T22:27:04,211 warning: no files found matching 'funannotate/html_template/*' 2023-04-11T22:27:04,214 warning: no files found matching 'scripts/*' 2023-04-11T22:27:04,215 adding license file 'LICENSE.md' 2023-04-11T22:27:04,228 writing manifest file '/tmp/pip-pip-egg-info-hxs_jp3t/funannotate.egg-info/SOURCES.txt' 2023-04-11T22:27:04,348 Preparing metadata (setup.py): finished with status 'done' 2023-04-11T22:27:04,361 Source in /tmp/pip-wheel-h4x6pce3/funannotate_09d20e531e96486386169251ecaed914 has version 1.8.15, which satisfies requirement funannotate==1.8.15 from https://files.pythonhosted.org/packages/64/2a/ba75c916f152dbcada5675013cff161a85e96b358b50a592fd24c9bf6cee/funannotate-1.8.15.tar.gz 2023-04-11T22:27:04,363 Removed funannotate==1.8.15 from https://files.pythonhosted.org/packages/64/2a/ba75c916f152dbcada5675013cff161a85e96b358b50a592fd24c9bf6cee/funannotate-1.8.15.tar.gz from build tracker '/tmp/pip-build-tracker-b4lz9ak1' 2023-04-11T22:27:04,380 Created temporary directory: /tmp/pip-unpack-h_fex6vn 2023-04-11T22:27:04,381 Building wheels for collected packages: funannotate 2023-04-11T22:27:04,389 Created temporary directory: /tmp/pip-wheel-r5ie4hcs 2023-04-11T22:27:04,390 Building wheel for funannotate (setup.py): started 2023-04-11T22:27:04,392 Destination directory: /tmp/pip-wheel-r5ie4hcs 2023-04-11T22:27:04,393 Running command python setup.py bdist_wheel 2023-04-11T22:27:06,713 running bdist_wheel 2023-04-11T22:27:07,591 running build 2023-04-11T22:27:07,592 running build_py 2023-04-11T22:27:07,698 creating build 2023-04-11T22:27:07,700 creating build/lib 2023-04-11T22:27:07,702 creating build/lib/funannotate 2023-04-11T22:27:07,705 copying funannotate/library.py -> build/lib/funannotate 2023-04-11T22:27:07,735 copying funannotate/setupDB.py -> build/lib/funannotate 2023-04-11T22:27:07,741 copying funannotate/__version__.py -> build/lib/funannotate 2023-04-11T22:27:07,745 copying funannotate/test.py -> build/lib/funannotate 2023-04-11T22:27:07,751 copying funannotate/interlap.py -> build/lib/funannotate 2023-04-11T22:27:07,757 copying funannotate/funannotate.py -> build/lib/funannotate 2023-04-11T22:27:07,763 copying funannotate/sort.py -> build/lib/funannotate 2023-04-11T22:27:07,768 copying funannotate/mask.py -> build/lib/funannotate 2023-04-11T22:27:07,773 copying funannotate/species.py -> build/lib/funannotate 2023-04-11T22:27:07,778 copying funannotate/__init__.py -> build/lib/funannotate 2023-04-11T22:27:07,782 copying funannotate/predict.py -> build/lib/funannotate 2023-04-11T22:27:07,795 copying funannotate/remote.py -> build/lib/funannotate 2023-04-11T22:27:07,800 copying funannotate/database.py -> build/lib/funannotate 2023-04-11T22:27:07,805 copying funannotate/train.py -> build/lib/funannotate 2023-04-11T22:27:07,813 copying funannotate/check.py -> build/lib/funannotate 2023-04-11T22:27:07,819 copying funannotate/fix.py -> build/lib/funannotate 2023-04-11T22:27:07,824 copying funannotate/resources.py -> build/lib/funannotate 2023-04-11T22:27:07,829 copying funannotate/outgroups.py -> build/lib/funannotate 2023-04-11T22:27:07,834 copying funannotate/compare.py -> build/lib/funannotate 2023-04-11T22:27:07,842 copying funannotate/iprscan.py -> build/lib/funannotate 2023-04-11T22:27:07,846 copying funannotate/update.py -> build/lib/funannotate 2023-04-11T22:27:07,858 copying funannotate/stackedBarGraph.py -> build/lib/funannotate 2023-04-11T22:27:07,863 copying funannotate/annotate.py -> build/lib/funannotate 2023-04-11T22:27:07,872 copying funannotate/clean.py -> build/lib/funannotate 2023-04-11T22:27:07,880 creating build/lib/funannotate/utilities 2023-04-11T22:27:07,883 copying funannotate/utilities/gbk2parts.py -> build/lib/funannotate/utilities 2023-04-11T22:27:07,887 copying funannotate/utilities/stats.py -> build/lib/funannotate/utilities 2023-04-11T22:27:07,891 copying funannotate/utilities/get_longest_isoform.py -> build/lib/funannotate/utilities 2023-04-11T22:27:07,895 copying funannotate/utilities/gff2prot.py -> build/lib/funannotate/utilities 2023-04-11T22:27:07,900 copying funannotate/utilities/quarry2gff3.py -> build/lib/funannotate/utilities 2023-04-11T22:27:07,904 copying funannotate/utilities/gff2tbl.py -> build/lib/funannotate/utilities 2023-04-11T22:27:07,910 copying funannotate/utilities/__init__.py -> build/lib/funannotate/utilities 2023-04-11T22:27:07,914 copying funannotate/utilities/contrast.py -> build/lib/funannotate/utilities 2023-04-11T22:27:07,922 copying funannotate/utilities/tbl2gbk.py -> build/lib/funannotate/utilities 2023-04-11T22:27:07,927 copying funannotate/utilities/bam2gff3.py -> build/lib/funannotate/utilities 2023-04-11T22:27:07,931 copying funannotate/utilities/stringtie2gff3.py -> build/lib/funannotate/utilities 2023-04-11T22:27:07,935 copying funannotate/utilities/gff_reformat.py -> build/lib/funannotate/utilities 2023-04-11T22:27:07,939 running egg_info 2023-04-11T22:27:08,153 writing funannotate.egg-info/PKG-INFO 2023-04-11T22:27:08,158 writing dependency_links to funannotate.egg-info/dependency_links.txt 2023-04-11T22:27:08,161 writing entry points to funannotate.egg-info/entry_points.txt 2023-04-11T22:27:08,164 writing requirements to funannotate.egg-info/requires.txt 2023-04-11T22:27:08,166 writing top-level names to funannotate.egg-info/top_level.txt 2023-04-11T22:27:08,273 reading manifest file 'funannotate.egg-info/SOURCES.txt' 2023-04-11T22:27:08,298 reading manifest template 'MANIFEST.in' 2023-04-11T22:27:08,309 warning: no files found matching 'funannotate/html_template/*' 2023-04-11T22:27:08,311 warning: no files found matching 'scripts/*' 2023-04-11T22:27:08,312 adding license file 'LICENSE.md' 2023-04-11T22:27:08,330 writing manifest file 'funannotate.egg-info/SOURCES.txt' 2023-04-11T22:27:08,337 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funannotate.aux_scripts' as data is deprecated, please list it in `packages`. 2023-04-11T22:27:08,337 !! 2023-04-11T22:27:08,338 ############################ 2023-04-11T22:27:08,338 # Package would be ignored # 2023-04-11T22:27:08,339 ############################ 2023-04-11T22:27:08,339 Python recognizes 'funannotate.aux_scripts' as an importable package, 2023-04-11T22:27:08,339 but it is not listed in the `packages` configuration of setuptools. 2023-04-11T22:27:08,340 'funannotate.aux_scripts' has been automatically added to the distribution only 2023-04-11T22:27:08,340 because it may contain data files, but this behavior is likely to change 2023-04-11T22:27:08,341 in future versions of setuptools (and therefore is considered deprecated). 2023-04-11T22:27:08,341 Please make sure that 'funannotate.aux_scripts' is included as a package by using 2023-04-11T22:27:08,341 the `packages` configuration field or the proper discovery methods 2023-04-11T22:27:08,342 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-11T22:27:08,342 instead of `find_packages(...)`/`find:`). 2023-04-11T22:27:08,343 You can read more about "package discovery" and "data files" on setuptools 2023-04-11T22:27:08,343 documentation page. 2023-04-11T22:27:08,344 !! 2023-04-11T22:27:08,344 check.warn(importable) 2023-04-11T22:27:08,345 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funannotate.config' as data is deprecated, please list it in `packages`. 2023-04-11T22:27:08,345 !! 2023-04-11T22:27:08,346 ############################ 2023-04-11T22:27:08,347 # Package would be ignored # 2023-04-11T22:27:08,347 ############################ 2023-04-11T22:27:08,347 Python recognizes 'funannotate.config' as an importable package, 2023-04-11T22:27:08,347 but it is not listed in the `packages` configuration of setuptools. 2023-04-11T22:27:08,348 'funannotate.config' has been automatically added to the distribution only 2023-04-11T22:27:08,348 because it may contain data files, but this behavior is likely to change 2023-04-11T22:27:08,349 in future versions of setuptools (and therefore is considered deprecated). 2023-04-11T22:27:08,349 Please make sure that 'funannotate.config' is included as a package by using 2023-04-11T22:27:08,349 the `packages` configuration field or the proper discovery methods 2023-04-11T22:27:08,350 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-11T22:27:08,350 instead of `find_packages(...)`/`find:`). 2023-04-11T22:27:08,351 You can read more about "package discovery" and "data files" on setuptools 2023-04-11T22:27:08,351 documentation page. 2023-04-11T22:27:08,352 !! 2023-04-11T22:27:08,352 check.warn(importable) 2023-04-11T22:27:08,353 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funannotate.html_template.css' as data is deprecated, please list it in `packages`. 2023-04-11T22:27:08,353 !! 2023-04-11T22:27:08,354 ############################ 2023-04-11T22:27:08,354 # Package would be ignored # 2023-04-11T22:27:08,355 ############################ 2023-04-11T22:27:08,355 Python recognizes 'funannotate.html_template.css' as an importable package, 2023-04-11T22:27:08,355 but it is not listed in the `packages` configuration of setuptools. 2023-04-11T22:27:08,356 'funannotate.html_template.css' has been automatically added to the distribution only 2023-04-11T22:27:08,356 because it may contain data files, but this behavior is likely to change 2023-04-11T22:27:08,357 in future versions of setuptools (and therefore is considered deprecated). 2023-04-11T22:27:08,357 Please make sure that 'funannotate.html_template.css' is included as a package by using 2023-04-11T22:27:08,358 the `packages` configuration field or the proper discovery methods 2023-04-11T22:27:08,358 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-11T22:27:08,358 instead of `find_packages(...)`/`find:`). 2023-04-11T22:27:08,359 You can read more about "package discovery" and "data files" on setuptools 2023-04-11T22:27:08,359 documentation page. 2023-04-11T22:27:08,360 !! 2023-04-11T22:27:08,361 check.warn(importable) 2023-04-11T22:27:08,361 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funannotate.html_template.js' as data is deprecated, please list it in `packages`. 2023-04-11T22:27:08,362 !! 2023-04-11T22:27:08,363 ############################ 2023-04-11T22:27:08,363 # Package would be ignored # 2023-04-11T22:27:08,363 ############################ 2023-04-11T22:27:08,364 Python recognizes 'funannotate.html_template.js' as an importable package, 2023-04-11T22:27:08,364 but it is not listed in the `packages` configuration of setuptools. 2023-04-11T22:27:08,365 'funannotate.html_template.js' has been automatically added to the distribution only 2023-04-11T22:27:08,365 because it may contain data files, but this behavior is likely to change 2023-04-11T22:27:08,365 in future versions of setuptools (and therefore is considered deprecated). 2023-04-11T22:27:08,366 Please make sure that 'funannotate.html_template.js' is included as a package by using 2023-04-11T22:27:08,366 the `packages` configuration field or the proper discovery methods 2023-04-11T22:27:08,367 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-04-11T22:27:08,367 instead of `find_packages(...)`/`find:`). 2023-04-11T22:27:08,368 You can read more about "package discovery" and "data files" on setuptools 2023-04-11T22:27:08,368 documentation page. 2023-04-11T22:27:08,369 !! 2023-04-11T22:27:08,370 check.warn(importable) 2023-04-11T22:27:08,370 copying funannotate/downloads.json -> build/lib/funannotate 2023-04-11T22:27:08,370 creating build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,371 copying funannotate/aux_scripts/augustus_parallel.py -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,371 copying funannotate/aux_scripts/enrichment_parallel.py -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,371 copying funannotate/aux_scripts/fasta2agp.py -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,375 copying funannotate/aux_scripts/filterGenemark.pl -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,381 copying funannotate/aux_scripts/filterIntronsFindStrand.pl -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,386 copying funannotate/aux_scripts/funannotate-BUSCO2-py2.py -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,400 copying funannotate/aux_scripts/funannotate-BUSCO2.py -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,413 copying funannotate/aux_scripts/funannotate-p2g.py -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,419 copying funannotate/aux_scripts/funannotate-runEVM.py -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,424 copying funannotate/aux_scripts/genemark_gtf2gff3.pl -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,429 copying funannotate/aux_scripts/getEggNog.sh -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,433 copying funannotate/aux_scripts/hmmer_parallel.py -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,438 copying funannotate/aux_scripts/iprscan-local.py -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,443 copying funannotate/aux_scripts/iprscan2annotations.py -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,448 copying funannotate/aux_scripts/pal2nal.pl -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,455 copying funannotate/aux_scripts/phobius-multiproc.py -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,460 copying funannotate/aux_scripts/phobius-remote.pl -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,466 copying funannotate/aux_scripts/runIPRscan.py -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,471 copying funannotate/aux_scripts/sam2bam.sh -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,475 copying funannotate/aux_scripts/tbl2asn_parallel.py -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,480 copying funannotate/aux_scripts/trinity.py -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,485 copying funannotate/aux_scripts/trnascan2gff3.pl -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,489 copying funannotate/aux_scripts/xmlcombine.py -> build/lib/funannotate/aux_scripts 2023-04-11T22:27:08,493 creating build/lib/funannotate/config 2023-04-11T22:27:08,495 copying funannotate/config/EOG092C0B3U.prfl -> build/lib/funannotate/config 2023-04-11T22:27:08,507 copying funannotate/config/TruSeq3-PE.fa -> build/lib/funannotate/config 2023-04-11T22:27:08,511 copying funannotate/config/TruSeq3-SE.fa -> build/lib/funannotate/config 2023-04-11T22:27:08,515 copying funannotate/config/busco_test.fa -> build/lib/funannotate/config 2023-04-11T22:27:08,519 copying funannotate/config/codeml.config -> build/lib/funannotate/config 2023-04-11T22:27:08,523 copying funannotate/config/extrinsic.E.XNT.RM.cfg -> build/lib/funannotate/config 2023-04-11T22:27:08,527 copying funannotate/config/smcogs.txt -> build/lib/funannotate/config 2023-04-11T22:27:08,532 copying funannotate/config/test.sbt -> build/lib/funannotate/config 2023-04-11T22:27:08,536 copying funannotate/config/tf_interpro.txt -> build/lib/funannotate/config 2023-04-11T22:27:08,540 creating build/lib/funannotate/html_template 2023-04-11T22:27:08,541 creating build/lib/funannotate/html_template/css 2023-04-11T22:27:08,543 copying funannotate/html_template/css/bootstrap.min.css -> build/lib/funannotate/html_template/css 2023-04-11T22:27:08,555 copying funannotate/html_template/css/starter-template.css -> build/lib/funannotate/html_template/css 2023-04-11T22:27:08,560 creating build/lib/funannotate/html_template/js 2023-04-11T22:27:08,561 copying funannotate/html_template/js/bootstrap.min.js -> build/lib/funannotate/html_template/js 2023-04-11T22:27:08,569 copying funannotate/html_template/js/ie-emulation-modes-warning.js -> build/lib/funannotate/html_template/js 2023-04-11T22:27:08,573 copying funannotate/html_template/js/ie10-viewport-bug-workaround.js -> build/lib/funannotate/html_template/js 2023-04-11T22:27:08,577 copying funannotate/html_template/js/jquery.min.js -> build/lib/funannotate/html_template/js 2023-04-11T22:27:08,696 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-04-11T22:27:08,697 setuptools.SetuptoolsDeprecationWarning, 2023-04-11T22:27:08,798 installing to build/bdist.linux-armv7l/wheel 2023-04-11T22:27:08,799 running install 2023-04-11T22:27:08,859 running install_lib 2023-04-11T22:27:08,962 creating build/bdist.linux-armv7l 2023-04-11T22:27:08,963 creating build/bdist.linux-armv7l/wheel 2023-04-11T22:27:08,967 creating build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:08,969 copying build/lib/funannotate/library.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:08,995 copying build/lib/funannotate/setupDB.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,001 copying build/lib/funannotate/__version__.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,005 copying build/lib/funannotate/test.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,010 copying build/lib/funannotate/downloads.json -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,014 copying build/lib/funannotate/interlap.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,019 copying build/lib/funannotate/funannotate.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,025 copying build/lib/funannotate/sort.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,028 copying build/lib/funannotate/mask.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,033 copying build/lib/funannotate/species.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,037 copying build/lib/funannotate/__init__.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,041 copying build/lib/funannotate/predict.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,054 creating build/bdist.linux-armv7l/wheel/funannotate/config 2023-04-11T22:27:09,055 copying build/lib/funannotate/config/extrinsic.E.XNT.RM.cfg -> build/bdist.linux-armv7l/wheel/funannotate/config 2023-04-11T22:27:09,059 copying build/lib/funannotate/config/EOG092C0B3U.prfl -> build/bdist.linux-armv7l/wheel/funannotate/config 2023-04-11T22:27:09,071 copying build/lib/funannotate/config/TruSeq3-SE.fa -> build/bdist.linux-armv7l/wheel/funannotate/config 2023-04-11T22:27:09,075 copying build/lib/funannotate/config/smcogs.txt -> build/bdist.linux-armv7l/wheel/funannotate/config 2023-04-11T22:27:09,080 copying build/lib/funannotate/config/test.sbt -> build/bdist.linux-armv7l/wheel/funannotate/config 2023-04-11T22:27:09,083 copying build/lib/funannotate/config/TruSeq3-PE.fa -> build/bdist.linux-armv7l/wheel/funannotate/config 2023-04-11T22:27:09,087 copying build/lib/funannotate/config/tf_interpro.txt -> build/bdist.linux-armv7l/wheel/funannotate/config 2023-04-11T22:27:09,091 copying build/lib/funannotate/config/codeml.config -> build/bdist.linux-armv7l/wheel/funannotate/config 2023-04-11T22:27:09,095 copying build/lib/funannotate/config/busco_test.fa -> build/bdist.linux-armv7l/wheel/funannotate/config 2023-04-11T22:27:09,098 copying build/lib/funannotate/remote.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,105 creating build/bdist.linux-armv7l/wheel/funannotate/html_template 2023-04-11T22:27:09,107 creating build/bdist.linux-armv7l/wheel/funannotate/html_template/css 2023-04-11T22:27:09,109 copying build/lib/funannotate/html_template/css/starter-template.css -> build/bdist.linux-armv7l/wheel/funannotate/html_template/css 2023-04-11T22:27:09,113 copying build/lib/funannotate/html_template/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/funannotate/html_template/css 2023-04-11T22:27:09,126 creating build/bdist.linux-armv7l/wheel/funannotate/html_template/js 2023-04-11T22:27:09,128 copying build/lib/funannotate/html_template/js/ie10-viewport-bug-workaround.js -> build/bdist.linux-armv7l/wheel/funannotate/html_template/js 2023-04-11T22:27:09,132 copying build/lib/funannotate/html_template/js/ie-emulation-modes-warning.js -> build/bdist.linux-armv7l/wheel/funannotate/html_template/js 2023-04-11T22:27:09,135 copying build/lib/funannotate/html_template/js/jquery.min.js -> build/bdist.linux-armv7l/wheel/funannotate/html_template/js 2023-04-11T22:27:09,145 copying build/lib/funannotate/html_template/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/funannotate/html_template/js 2023-04-11T22:27:09,151 copying build/lib/funannotate/database.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,154 copying build/lib/funannotate/train.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,162 copying build/lib/funannotate/check.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,167 copying build/lib/funannotate/fix.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,171 copying build/lib/funannotate/resources.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,177 creating build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,179 copying build/lib/funannotate/aux_scripts/funannotate-BUSCO2.py -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,191 copying build/lib/funannotate/aux_scripts/iprscan-local.py -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,195 copying build/lib/funannotate/aux_scripts/runIPRscan.py -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,200 copying build/lib/funannotate/aux_scripts/trnascan2gff3.pl -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,205 copying build/lib/funannotate/aux_scripts/iprscan2annotations.py -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,209 copying build/lib/funannotate/aux_scripts/phobius-remote.pl -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,215 copying build/lib/funannotate/aux_scripts/trinity.py -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,220 copying build/lib/funannotate/aux_scripts/xmlcombine.py -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,223 copying build/lib/funannotate/aux_scripts/sam2bam.sh -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,226 copying build/lib/funannotate/aux_scripts/funannotate-p2g.py -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,232 copying build/lib/funannotate/aux_scripts/tbl2asn_parallel.py -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,236 copying build/lib/funannotate/aux_scripts/pal2nal.pl -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,244 copying build/lib/funannotate/aux_scripts/enrichment_parallel.py -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,248 copying build/lib/funannotate/aux_scripts/phobius-multiproc.py -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,252 copying build/lib/funannotate/aux_scripts/getEggNog.sh -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,255 copying build/lib/funannotate/aux_scripts/hmmer_parallel.py -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,260 copying build/lib/funannotate/aux_scripts/funannotate-BUSCO2-py2.py -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,273 copying build/lib/funannotate/aux_scripts/filterIntronsFindStrand.pl -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,277 copying build/lib/funannotate/aux_scripts/genemark_gtf2gff3.pl -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,281 copying build/lib/funannotate/aux_scripts/augustus_parallel.py -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,285 copying build/lib/funannotate/aux_scripts/filterGenemark.pl -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,290 copying build/lib/funannotate/aux_scripts/funannotate-runEVM.py -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,295 copying build/lib/funannotate/aux_scripts/fasta2agp.py -> build/bdist.linux-armv7l/wheel/funannotate/aux_scripts 2023-04-11T22:27:09,299 copying build/lib/funannotate/outgroups.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,304 creating build/bdist.linux-armv7l/wheel/funannotate/utilities 2023-04-11T22:27:09,306 copying build/lib/funannotate/utilities/gbk2parts.py -> build/bdist.linux-armv7l/wheel/funannotate/utilities 2023-04-11T22:27:09,310 copying build/lib/funannotate/utilities/stats.py -> build/bdist.linux-armv7l/wheel/funannotate/utilities 2023-04-11T22:27:09,313 copying build/lib/funannotate/utilities/get_longest_isoform.py -> build/bdist.linux-armv7l/wheel/funannotate/utilities 2023-04-11T22:27:09,317 copying build/lib/funannotate/utilities/gff2prot.py -> build/bdist.linux-armv7l/wheel/funannotate/utilities 2023-04-11T22:27:09,320 copying build/lib/funannotate/utilities/quarry2gff3.py -> build/bdist.linux-armv7l/wheel/funannotate/utilities 2023-04-11T22:27:09,323 copying build/lib/funannotate/utilities/gff2tbl.py -> build/bdist.linux-armv7l/wheel/funannotate/utilities 2023-04-11T22:27:09,328 copying build/lib/funannotate/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/funannotate/utilities 2023-04-11T22:27:09,331 copying build/lib/funannotate/utilities/contrast.py -> build/bdist.linux-armv7l/wheel/funannotate/utilities 2023-04-11T22:27:09,337 copying build/lib/funannotate/utilities/tbl2gbk.py -> build/bdist.linux-armv7l/wheel/funannotate/utilities 2023-04-11T22:27:09,341 copying build/lib/funannotate/utilities/bam2gff3.py -> build/bdist.linux-armv7l/wheel/funannotate/utilities 2023-04-11T22:27:09,344 copying build/lib/funannotate/utilities/stringtie2gff3.py -> build/bdist.linux-armv7l/wheel/funannotate/utilities 2023-04-11T22:27:09,348 copying build/lib/funannotate/utilities/gff_reformat.py -> build/bdist.linux-armv7l/wheel/funannotate/utilities 2023-04-11T22:27:09,351 copying build/lib/funannotate/compare.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,358 copying build/lib/funannotate/iprscan.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,362 copying build/lib/funannotate/update.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,373 copying build/lib/funannotate/stackedBarGraph.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,378 copying build/lib/funannotate/annotate.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,386 copying build/lib/funannotate/clean.py -> build/bdist.linux-armv7l/wheel/funannotate 2023-04-11T22:27:09,390 running install_egg_info 2023-04-11T22:27:09,498 Copying funannotate.egg-info to build/bdist.linux-armv7l/wheel/funannotate-1.8.15-py3.7.egg-info 2023-04-11T22:27:09,521 running install_scripts 2023-04-11T22:27:09,560 creating build/bdist.linux-armv7l/wheel/funannotate-1.8.15.dist-info/WHEEL 2023-04-11T22:27:09,565 creating '/tmp/pip-wheel-r5ie4hcs/funannotate-1.8.15-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-04-11T22:27:09,571 adding 'funannotate/__init__.py' 2023-04-11T22:27:09,573 adding 'funannotate/__version__.py' 2023-04-11T22:27:09,598 adding 'funannotate/annotate.py' 2023-04-11T22:27:09,605 adding 'funannotate/check.py' 2023-04-11T22:27:09,610 adding 'funannotate/clean.py' 2023-04-11T22:27:09,627 adding 'funannotate/compare.py' 2023-04-11T22:27:09,631 adding 'funannotate/database.py' 2023-04-11T22:27:09,634 adding 'funannotate/downloads.json' 2023-04-11T22:27:09,638 adding 'funannotate/fix.py' 2023-04-11T22:27:09,648 adding 'funannotate/funannotate.py' 2023-04-11T22:27:09,652 adding 'funannotate/interlap.py' 2023-04-11T22:27:09,655 adding 'funannotate/iprscan.py' 2023-04-11T22:27:09,755 adding 'funannotate/library.py' 2023-04-11T22:27:09,769 adding 'funannotate/mask.py' 2023-04-11T22:27:09,772 adding 'funannotate/outgroups.py' 2023-04-11T22:27:09,801 adding 'funannotate/predict.py' 2023-04-11T22:27:09,809 adding 'funannotate/remote.py' 2023-04-11T22:27:09,814 adding 'funannotate/resources.py' 2023-04-11T22:27:09,823 adding 'funannotate/setupDB.py' 2023-04-11T22:27:09,827 adding 'funannotate/sort.py' 2023-04-11T22:27:09,830 adding 'funannotate/species.py' 2023-04-11T22:27:09,835 adding 'funannotate/stackedBarGraph.py' 2023-04-11T22:27:09,840 adding 'funannotate/test.py' 2023-04-11T22:27:09,857 adding 'funannotate/train.py' 2023-04-11T22:27:09,894 adding 'funannotate/update.py' 2023-04-11T22:27:09,905 adding 'funannotate/aux_scripts/augustus_parallel.py' 2023-04-11T22:27:09,909 adding 'funannotate/aux_scripts/enrichment_parallel.py' 2023-04-11T22:27:09,912 adding 'funannotate/aux_scripts/fasta2agp.py' 2023-04-11T22:27:09,919 adding 'funannotate/aux_scripts/filterGenemark.pl' 2023-04-11T22:27:09,922 adding 'funannotate/aux_scripts/filterIntronsFindStrand.pl' 2023-04-11T22:27:09,961 adding 'funannotate/aux_scripts/funannotate-BUSCO2-py2.py' 2023-04-11T22:27:10,003 adding 'funannotate/aux_scripts/funannotate-BUSCO2.py' 2023-04-11T22:27:10,012 adding 'funannotate/aux_scripts/funannotate-p2g.py' 2023-04-11T22:27:10,019 adding 'funannotate/aux_scripts/funannotate-runEVM.py' 2023-04-11T22:27:10,023 adding 'funannotate/aux_scripts/genemark_gtf2gff3.pl' 2023-04-11T22:27:10,026 adding 'funannotate/aux_scripts/getEggNog.sh' 2023-04-11T22:27:10,029 adding 'funannotate/aux_scripts/hmmer_parallel.py' 2023-04-11T22:27:10,034 adding 'funannotate/aux_scripts/iprscan-local.py' 2023-04-11T22:27:10,038 adding 'funannotate/aux_scripts/iprscan2annotations.py' 2023-04-11T22:27:10,051 adding 'funannotate/aux_scripts/pal2nal.pl' 2023-04-11T22:27:10,056 adding 'funannotate/aux_scripts/phobius-multiproc.py' 2023-04-11T22:27:10,066 adding 'funannotate/aux_scripts/phobius-remote.pl' 2023-04-11T22:27:10,072 adding 'funannotate/aux_scripts/runIPRscan.py' 2023-04-11T22:27:10,075 adding 'funannotate/aux_scripts/sam2bam.sh' 2023-04-11T22:27:10,079 adding 'funannotate/aux_scripts/tbl2asn_parallel.py' 2023-04-11T22:27:10,084 adding 'funannotate/aux_scripts/trinity.py' 2023-04-11T22:27:10,087 adding 'funannotate/aux_scripts/trnascan2gff3.pl' 2023-04-11T22:27:10,090 adding 'funannotate/aux_scripts/xmlcombine.py' 2023-04-11T22:27:10,152 adding 'funannotate/config/EOG092C0B3U.prfl' 2023-04-11T22:27:10,157 adding 'funannotate/config/TruSeq3-PE.fa' 2023-04-11T22:27:10,160 adding 'funannotate/config/TruSeq3-SE.fa' 2023-04-11T22:27:10,164 adding 'funannotate/config/busco_test.fa' 2023-04-11T22:27:10,167 adding 'funannotate/config/codeml.config' 2023-04-11T22:27:10,170 adding 'funannotate/config/extrinsic.E.XNT.RM.cfg' 2023-04-11T22:27:10,174 adding 'funannotate/config/smcogs.txt' 2023-04-11T22:27:10,177 adding 'funannotate/config/test.sbt' 2023-04-11T22:27:10,180 adding 'funannotate/config/tf_interpro.txt' 2023-04-11T22:27:10,205 adding 'funannotate/html_template/css/bootstrap.min.css' 2023-04-11T22:27:10,210 adding 'funannotate/html_template/css/starter-template.css' 2023-04-11T22:27:10,222 adding 'funannotate/html_template/js/bootstrap.min.js' 2023-04-11T22:27:10,226 adding 'funannotate/html_template/js/ie-emulation-modes-warning.js' 2023-04-11T22:27:10,228 adding 'funannotate/html_template/js/ie10-viewport-bug-workaround.js' 2023-04-11T22:27:10,261 adding 'funannotate/html_template/js/jquery.min.js' 2023-04-11T22:27:10,266 adding 'funannotate/utilities/__init__.py' 2023-04-11T22:27:10,269 adding 'funannotate/utilities/bam2gff3.py' 2023-04-11T22:27:10,282 adding 'funannotate/utilities/contrast.py' 2023-04-11T22:27:10,286 adding 'funannotate/utilities/gbk2parts.py' 2023-04-11T22:27:10,289 adding 'funannotate/utilities/get_longest_isoform.py' 2023-04-11T22:27:10,291 adding 'funannotate/utilities/gff2prot.py' 2023-04-11T22:27:10,296 adding 'funannotate/utilities/gff2tbl.py' 2023-04-11T22:27:10,300 adding 'funannotate/utilities/gff_reformat.py' 2023-04-11T22:27:10,303 adding 'funannotate/utilities/quarry2gff3.py' 2023-04-11T22:27:10,305 adding 'funannotate/utilities/stats.py' 2023-04-11T22:27:10,309 adding 'funannotate/utilities/stringtie2gff3.py' 2023-04-11T22:27:10,312 adding 'funannotate/utilities/tbl2gbk.py' 2023-04-11T22:27:10,318 adding 'funannotate-1.8.15.dist-info/LICENSE.md' 2023-04-11T22:27:10,321 adding 'funannotate-1.8.15.dist-info/METADATA' 2023-04-11T22:27:10,324 adding 'funannotate-1.8.15.dist-info/WHEEL' 2023-04-11T22:27:10,326 adding 'funannotate-1.8.15.dist-info/entry_points.txt' 2023-04-11T22:27:10,328 adding 'funannotate-1.8.15.dist-info/top_level.txt' 2023-04-11T22:27:10,331 adding 'funannotate-1.8.15.dist-info/RECORD' 2023-04-11T22:27:10,355 removing build/bdist.linux-armv7l/wheel 2023-04-11T22:27:10,569 Building wheel for funannotate (setup.py): finished with status 'done' 2023-04-11T22:27:10,591 Created wheel for funannotate: filename=funannotate-1.8.15-py3-none-any.whl size=507616 sha256=4c16def029502cc442f827338a8821a98e42e01a3e78943c04e3143e6cf9bb17 2023-04-11T22:27:10,593 Stored in directory: /tmp/pip-ephem-wheel-cache-ujwrhrok/wheels/73/e6/45/fc33f7e9fb1b08d1c1babf0cce4967aa9c15de33860a13a55a 2023-04-11T22:27:10,627 Successfully built funannotate 2023-04-11T22:27:10,673 Removed build tracker: '/tmp/pip-build-tracker-b4lz9ak1'