2023-04-13T22:04:23,824 Created temporary directory: /tmp/pip-ephem-wheel-cache-9ma8679o 2023-04-13T22:04:23,829 Created temporary directory: /tmp/pip-build-tracker-vmhi9c2e 2023-04-13T22:04:23,830 Initialized build tracking at /tmp/pip-build-tracker-vmhi9c2e 2023-04-13T22:04:23,830 Created build tracker: /tmp/pip-build-tracker-vmhi9c2e 2023-04-13T22:04:23,831 Entered build tracker: /tmp/pip-build-tracker-vmhi9c2e 2023-04-13T22:04:23,832 Created temporary directory: /tmp/pip-wheel-tz0o61yu 2023-04-13T22:04:23,842 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://www.piwheels.org/simple/rcsb-exdb/) 2023-04-13T22:04:24,506 Skipping link: No binaries permitted for rcsb-exdb: https://www.piwheels.org/simple/rcsb-exdb/rcsb.exdb-0.14-py2.py3-none-any.whl#sha256=bc785d883d7bd02e5ba7682bc9174f1220c03de11fe29759815ac8c77356be93 (from https://www.piwheels.org/simple/rcsb-exdb/) 2023-04-13T22:04:24,507 Skipping link: not a file: https://www.piwheels.org/simple/rcsb-exdb/ 2023-04-13T22:04:24,507 Skipping link: not a file: https://pypi.org/simple/rcsb-exdb/ 2023-04-13T22:04:24,566 Given no hashes to check 1 links for project 'rcsb-exdb': discarding no candidates 2023-04-13T22:04:24,597 Collecting rcsb-exdb==0.96 2023-04-13T22:04:24,601 Created temporary directory: /tmp/pip-unpack-xudr2edy 2023-04-13T22:04:24,773 Downloading rcsb.exdb-0.96.tar.gz (86 kB) 2023-04-13T22:04:25,272 Added rcsb-exdb==0.96 from https://files.pythonhosted.org/packages/5c/ab/b89462802a848e12b85511e4189d280decffa192112415540aff47ef7795/rcsb.exdb-0.96.tar.gz to build tracker '/tmp/pip-build-tracker-vmhi9c2e' 2023-04-13T22:04:25,275 Running setup.py (path:/tmp/pip-wheel-tz0o61yu/rcsb-exdb_1af34a874fc34149bca475f949ad6062/setup.py) egg_info for package rcsb-exdb 2023-04-13T22:04:25,276 Created temporary directory: /tmp/pip-pip-egg-info-54shtvyx 2023-04-13T22:04:25,277 Preparing metadata (setup.py): started 2023-04-13T22:04:25,279 Running command python setup.py egg_info 2023-04-13T22:04:26,928 running egg_info 2023-04-13T22:04:26,930 creating /tmp/pip-pip-egg-info-54shtvyx/rcsb.exdb.egg-info 2023-04-13T22:04:27,006 writing /tmp/pip-pip-egg-info-54shtvyx/rcsb.exdb.egg-info/PKG-INFO 2023-04-13T22:04:27,012 writing dependency_links to /tmp/pip-pip-egg-info-54shtvyx/rcsb.exdb.egg-info/dependency_links.txt 2023-04-13T22:04:27,016 writing entry points to /tmp/pip-pip-egg-info-54shtvyx/rcsb.exdb.egg-info/entry_points.txt 2023-04-13T22:04:27,019 writing requirements to /tmp/pip-pip-egg-info-54shtvyx/rcsb.exdb.egg-info/requires.txt 2023-04-13T22:04:27,021 writing top-level names to /tmp/pip-pip-egg-info-54shtvyx/rcsb.exdb.egg-info/top_level.txt 2023-04-13T22:04:27,024 writing manifest file '/tmp/pip-pip-egg-info-54shtvyx/rcsb.exdb.egg-info/SOURCES.txt' 2023-04-13T22:04:27,310 reading manifest file '/tmp/pip-pip-egg-info-54shtvyx/rcsb.exdb.egg-info/SOURCES.txt' 2023-04-13T22:04:27,314 reading manifest template 'MANIFEST.in' 2023-04-13T22:04:27,316 adding license file 'LICENSE' 2023-04-13T22:04:27,328 writing manifest file '/tmp/pip-pip-egg-info-54shtvyx/rcsb.exdb.egg-info/SOURCES.txt' 2023-04-13T22:04:27,330 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2023-04-13T22:04:27,331 % (opt, underscore_opt) 2023-04-13T22:04:27,448 Preparing metadata (setup.py): finished with status 'done' 2023-04-13T22:04:27,463 Source in /tmp/pip-wheel-tz0o61yu/rcsb-exdb_1af34a874fc34149bca475f949ad6062 has version 0.96, which satisfies requirement rcsb-exdb==0.96 from https://files.pythonhosted.org/packages/5c/ab/b89462802a848e12b85511e4189d280decffa192112415540aff47ef7795/rcsb.exdb-0.96.tar.gz 2023-04-13T22:04:27,465 Removed rcsb-exdb==0.96 from https://files.pythonhosted.org/packages/5c/ab/b89462802a848e12b85511e4189d280decffa192112415540aff47ef7795/rcsb.exdb-0.96.tar.gz from build tracker '/tmp/pip-build-tracker-vmhi9c2e' 2023-04-13T22:04:27,476 Created temporary directory: /tmp/pip-unpack-voqm8dc7 2023-04-13T22:04:27,477 Building wheels for collected packages: rcsb-exdb 2023-04-13T22:04:27,486 Created temporary directory: /tmp/pip-wheel-gtkou39v 2023-04-13T22:04:27,487 Building wheel for rcsb-exdb (setup.py): started 2023-04-13T22:04:27,489 Destination directory: /tmp/pip-wheel-gtkou39v 2023-04-13T22:04:27,489 Running command python setup.py bdist_wheel 2023-04-13T22:04:28,678 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:791: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2023-04-13T22:04:28,679 % (opt, underscore_opt) 2023-04-13T22:04:29,660 running bdist_wheel 2023-04-13T22:04:29,887 running build 2023-04-13T22:04:29,887 running build_py 2023-04-13T22:04:29,967 creating build 2023-04-13T22:04:29,968 creating build/lib 2023-04-13T22:04:29,969 creating build/lib/rcsb 2023-04-13T22:04:29,971 copying rcsb/__init__.py -> build/lib/rcsb 2023-04-13T22:04:29,976 creating build/lib/rcsb/exdb 2023-04-13T22:04:29,977 copying rcsb/exdb/__init__.py -> build/lib/rcsb/exdb 2023-04-13T22:04:29,983 creating build/lib/rcsb/exdb/utils 2023-04-13T22:04:29,984 copying rcsb/exdb/utils/__init__.py -> build/lib/rcsb/exdb/utils 2023-04-13T22:04:29,987 copying rcsb/exdb/utils/ObjectExtractor.py -> build/lib/rcsb/exdb/utils 2023-04-13T22:04:29,992 copying rcsb/exdb/utils/ObjectValidator.py -> build/lib/rcsb/exdb/utils 2023-04-13T22:04:29,996 copying rcsb/exdb/utils/ObjectAdapterBase.py -> build/lib/rcsb/exdb/utils 2023-04-13T22:04:29,999 copying rcsb/exdb/utils/ObjectUpdater.py -> build/lib/rcsb/exdb/utils 2023-04-13T22:04:30,003 copying rcsb/exdb/utils/ObjectTransformer.py -> build/lib/rcsb/exdb/utils 2023-04-13T22:04:30,008 creating build/lib/rcsb/exdb/cli 2023-04-13T22:04:30,010 copying rcsb/exdb/cli/__init__.py -> build/lib/rcsb/exdb/cli 2023-04-13T22:04:30,013 copying rcsb/exdb/cli/ExDbExec.py -> build/lib/rcsb/exdb/cli 2023-04-13T22:04:30,019 creating build/lib/rcsb/exdb/wf 2023-04-13T22:04:30,021 copying rcsb/exdb/wf/GlycanEtlWorkflow.py -> build/lib/rcsb/exdb/wf 2023-04-13T22:04:30,025 copying rcsb/exdb/wf/__init__.py -> build/lib/rcsb/exdb/wf 2023-04-13T22:04:30,028 copying rcsb/exdb/wf/PubChemEtlWorkflow.py -> build/lib/rcsb/exdb/wf 2023-04-13T22:04:30,032 copying rcsb/exdb/wf/ExDbWorkflow.py -> build/lib/rcsb/exdb/wf 2023-04-13T22:04:30,037 copying rcsb/exdb/wf/EntryInfoEtlWorkflow.py -> build/lib/rcsb/exdb/wf 2023-04-13T22:04:30,045 creating build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,047 copying rcsb/exdb/tests/fixturePdbxLoader.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,052 copying rcsb/exdb/tests/testGlycanProvider.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,055 copying rcsb/exdb/tests/testUniProtCoreEtlWorker.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,059 copying rcsb/exdb/tests/testPubChemIndexCacheProvider.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,063 copying rcsb/exdb/tests/__init__.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,066 copying rcsb/exdb/tests/testEntryInfoProvider.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,069 copying rcsb/exdb/tests/testEntryInfoEtlWorkflow.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,073 copying rcsb/exdb/tests/testCitationAdapter.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,077 copying rcsb/exdb/tests/testReferenceSequenceAnnotationAdapter.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,081 copying rcsb/exdb/tests/testReferenceSequenceAssignmentAdapter.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,085 copying rcsb/exdb/tests/testGlycanUtils.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,088 copying rcsb/exdb/tests/testReferenceSequenceCacheProvider.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,092 copying rcsb/exdb/tests/testPubChemEtlWorkflow.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,096 copying rcsb/exdb/tests/testTaxonomyExtractor.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,100 copying rcsb/exdb/tests/testChemRefLoader.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,103 copying rcsb/exdb/tests/testCitationUtils.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,107 copying rcsb/exdb/tests/testReferenceSequenceAssignmentAdapterValidate.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,111 copying rcsb/exdb/tests/testPubChemDataCacheProvider.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,115 copying rcsb/exdb/tests/fixtureDictMethodResourceProvider.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,119 copying rcsb/exdb/tests/testAnnotationExtractor.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,122 copying rcsb/exdb/tests/testReferenceSequenceAssignmentProvider.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,126 copying rcsb/exdb/tests/testTreeNodeListWorker.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,130 copying rcsb/exdb/tests/testObjectTransformer.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,133 copying rcsb/exdb/tests/testBranchedEntityExtractor.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,137 copying rcsb/exdb/tests/testExDbWorkflow.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,141 copying rcsb/exdb/tests/testUniProtExtractor.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,145 copying rcsb/exdb/tests/testPolymerEntityExtractor.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,148 copying rcsb/exdb/tests/testObjectUpdater.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,153 copying rcsb/exdb/tests/testCitationExtractor.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,156 copying rcsb/exdb/tests/testLigandNeighborMappingProvider.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,160 copying rcsb/exdb/tests/testPubChemEtlWrapper.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,164 copying rcsb/exdb/tests/testGlycanEtlWorkflow.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,168 copying rcsb/exdb/tests/testObjectExtractor.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,172 copying rcsb/exdb/tests/testChemRefMappingProvider.py -> build/lib/rcsb/exdb/tests 2023-04-13T22:04:30,178 creating build/lib/rcsb/exdb/chemref 2023-04-13T22:04:30,180 copying rcsb/exdb/chemref/PubChemDataCacheProvider.py -> build/lib/rcsb/exdb/chemref 2023-04-13T22:04:30,184 copying rcsb/exdb/chemref/__init__.py -> build/lib/rcsb/exdb/chemref 2023-04-13T22:04:30,187 copying rcsb/exdb/chemref/PubChemIndexCacheProvider.py -> build/lib/rcsb/exdb/chemref 2023-04-13T22:04:30,192 copying rcsb/exdb/chemref/PubChemEtlWrapper.py -> build/lib/rcsb/exdb/chemref 2023-04-13T22:04:30,198 copying rcsb/exdb/chemref/ChemRefExtractor.py -> build/lib/rcsb/exdb/chemref 2023-04-13T22:04:30,201 copying rcsb/exdb/chemref/ChemRefEtlWorker.py -> build/lib/rcsb/exdb/chemref 2023-04-13T22:04:30,205 copying rcsb/exdb/chemref/ChemRefMappingProvider.py -> build/lib/rcsb/exdb/chemref 2023-04-13T22:04:30,210 creating build/lib/rcsb/exdb/entry 2023-04-13T22:04:30,211 copying rcsb/exdb/entry/__init__.py -> build/lib/rcsb/exdb/entry 2023-04-13T22:04:30,215 copying rcsb/exdb/entry/EntryInfoProvider.py -> build/lib/rcsb/exdb/entry 2023-04-13T22:04:30,220 creating build/lib/rcsb/exdb/tree 2023-04-13T22:04:30,221 copying rcsb/exdb/tree/__init__.py -> build/lib/rcsb/exdb/tree 2023-04-13T22:04:30,224 copying rcsb/exdb/tree/TreeNodeListWorker.py -> build/lib/rcsb/exdb/tree 2023-04-13T22:04:30,231 creating build/lib/rcsb/exdb/seq 2023-04-13T22:04:30,233 copying rcsb/exdb/seq/UniProtExtractor.py -> build/lib/rcsb/exdb/seq 2023-04-13T22:04:30,237 copying rcsb/exdb/seq/UniProtCoreEtlWorker.py -> build/lib/rcsb/exdb/seq 2023-04-13T22:04:30,241 copying rcsb/exdb/seq/LigandNeighborMappingProvider.py -> build/lib/rcsb/exdb/seq 2023-04-13T22:04:30,244 copying rcsb/exdb/seq/ReferenceSequenceCacheProvider.py -> build/lib/rcsb/exdb/seq 2023-04-13T22:04:30,249 copying rcsb/exdb/seq/__init__.py -> build/lib/rcsb/exdb/seq 2023-04-13T22:04:30,252 copying rcsb/exdb/seq/LigandNeighborMappingExtractor.py -> build/lib/rcsb/exdb/seq 2023-04-13T22:04:30,256 copying rcsb/exdb/seq/ReferenceSequenceAnnotationProvider.py -> build/lib/rcsb/exdb/seq 2023-04-13T22:04:30,260 copying rcsb/exdb/seq/ReferenceSequenceAssignmentAdapter.py -> build/lib/rcsb/exdb/seq 2023-04-13T22:04:30,265 copying rcsb/exdb/seq/ReferenceSequenceAssignmentProvider.py -> build/lib/rcsb/exdb/seq 2023-04-13T22:04:30,271 copying rcsb/exdb/seq/TaxonomyExtractor.py -> build/lib/rcsb/exdb/seq 2023-04-13T22:04:30,275 copying rcsb/exdb/seq/PolymerEntityExtractor.py -> build/lib/rcsb/exdb/seq 2023-04-13T22:04:30,280 copying rcsb/exdb/seq/AnnotationExtractor.py -> build/lib/rcsb/exdb/seq 2023-04-13T22:04:30,284 copying rcsb/exdb/seq/ReferenceSequenceAnnotationAdapter.py -> build/lib/rcsb/exdb/seq 2023-04-13T22:04:30,291 creating build/lib/rcsb/exdb/citation 2023-04-13T22:04:30,292 copying rcsb/exdb/citation/__init__.py -> build/lib/rcsb/exdb/citation 2023-04-13T22:04:30,296 copying rcsb/exdb/citation/CitationAdapter.py -> build/lib/rcsb/exdb/citation 2023-04-13T22:04:30,299 copying rcsb/exdb/citation/CitationExtractor.py -> build/lib/rcsb/exdb/citation 2023-04-13T22:04:30,303 copying rcsb/exdb/citation/CitationUtils.py -> build/lib/rcsb/exdb/citation 2023-04-13T22:04:30,308 creating build/lib/rcsb/exdb/branch 2023-04-13T22:04:30,310 copying rcsb/exdb/branch/__init__.py -> build/lib/rcsb/exdb/branch 2023-04-13T22:04:30,313 copying rcsb/exdb/branch/GlycanUtils.py -> build/lib/rcsb/exdb/branch 2023-04-13T22:04:30,317 copying rcsb/exdb/branch/GlycanProvider.py -> build/lib/rcsb/exdb/branch 2023-04-13T22:04:30,321 copying rcsb/exdb/branch/BranchedEntityExtractor.py -> build/lib/rcsb/exdb/branch 2023-04-13T22:04:30,458 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-04-13T22:04:30,459 setuptools.SetuptoolsDeprecationWarning, 2023-04-13T22:04:30,536 installing to build/bdist.linux-armv7l/wheel 2023-04-13T22:04:30,537 running install 2023-04-13T22:04:30,596 running install_lib 2023-04-13T22:04:30,677 creating build/bdist.linux-armv7l 2023-04-13T22:04:30,678 creating build/bdist.linux-armv7l/wheel 2023-04-13T22:04:30,682 creating build/bdist.linux-armv7l/wheel/rcsb 2023-04-13T22:04:30,685 creating build/bdist.linux-armv7l/wheel/rcsb/exdb 2023-04-13T22:04:30,689 creating build/bdist.linux-armv7l/wheel/rcsb/exdb/utils 2023-04-13T22:04:30,691 copying build/lib/rcsb/exdb/utils/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/utils 2023-04-13T22:04:30,695 copying build/lib/rcsb/exdb/utils/ObjectExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/utils 2023-04-13T22:04:30,700 copying build/lib/rcsb/exdb/utils/ObjectValidator.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/utils 2023-04-13T22:04:30,705 copying build/lib/rcsb/exdb/utils/ObjectAdapterBase.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/utils 2023-04-13T22:04:30,708 copying build/lib/rcsb/exdb/utils/ObjectUpdater.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/utils 2023-04-13T22:04:30,713 copying build/lib/rcsb/exdb/utils/ObjectTransformer.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/utils 2023-04-13T22:04:30,718 creating build/bdist.linux-armv7l/wheel/rcsb/exdb/cli 2023-04-13T22:04:30,720 copying build/lib/rcsb/exdb/cli/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/cli 2023-04-13T22:04:30,724 copying build/lib/rcsb/exdb/cli/ExDbExec.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/cli 2023-04-13T22:04:30,729 copying build/lib/rcsb/exdb/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb 2023-04-13T22:04:30,734 creating build/bdist.linux-armv7l/wheel/rcsb/exdb/wf 2023-04-13T22:04:30,736 copying build/lib/rcsb/exdb/wf/GlycanEtlWorkflow.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/wf 2023-04-13T22:04:30,740 copying build/lib/rcsb/exdb/wf/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/wf 2023-04-13T22:04:30,743 copying build/lib/rcsb/exdb/wf/PubChemEtlWorkflow.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/wf 2023-04-13T22:04:30,748 copying build/lib/rcsb/exdb/wf/ExDbWorkflow.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/wf 2023-04-13T22:04:30,752 copying build/lib/rcsb/exdb/wf/EntryInfoEtlWorkflow.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/wf 2023-04-13T22:04:30,758 creating build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,760 copying build/lib/rcsb/exdb/tests/fixturePdbxLoader.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,765 copying build/lib/rcsb/exdb/tests/testGlycanProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,769 copying build/lib/rcsb/exdb/tests/testUniProtCoreEtlWorker.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,773 copying build/lib/rcsb/exdb/tests/testPubChemIndexCacheProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,779 copying build/lib/rcsb/exdb/tests/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,782 copying build/lib/rcsb/exdb/tests/testEntryInfoProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,786 copying build/lib/rcsb/exdb/tests/testEntryInfoEtlWorkflow.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,789 copying build/lib/rcsb/exdb/tests/testCitationAdapter.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,793 copying build/lib/rcsb/exdb/tests/testReferenceSequenceAnnotationAdapter.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,798 copying build/lib/rcsb/exdb/tests/testReferenceSequenceAssignmentAdapter.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,802 copying build/lib/rcsb/exdb/tests/testGlycanUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,805 copying build/lib/rcsb/exdb/tests/testReferenceSequenceCacheProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,809 copying build/lib/rcsb/exdb/tests/testPubChemEtlWorkflow.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,813 copying build/lib/rcsb/exdb/tests/testTaxonomyExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,817 copying build/lib/rcsb/exdb/tests/testChemRefLoader.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,821 copying build/lib/rcsb/exdb/tests/testCitationUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,825 copying build/lib/rcsb/exdb/tests/testReferenceSequenceAssignmentAdapterValidate.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,829 copying build/lib/rcsb/exdb/tests/testPubChemDataCacheProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,833 copying build/lib/rcsb/exdb/tests/fixtureDictMethodResourceProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,837 copying build/lib/rcsb/exdb/tests/testAnnotationExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,841 copying build/lib/rcsb/exdb/tests/testReferenceSequenceAssignmentProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,845 copying build/lib/rcsb/exdb/tests/testTreeNodeListWorker.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,849 copying build/lib/rcsb/exdb/tests/testObjectTransformer.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,853 copying build/lib/rcsb/exdb/tests/testBranchedEntityExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,865 copying build/lib/rcsb/exdb/tests/testExDbWorkflow.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,869 copying build/lib/rcsb/exdb/tests/testUniProtExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,872 copying build/lib/rcsb/exdb/tests/testPolymerEntityExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,876 copying build/lib/rcsb/exdb/tests/testObjectUpdater.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,886 copying build/lib/rcsb/exdb/tests/testCitationExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,890 copying build/lib/rcsb/exdb/tests/testLigandNeighborMappingProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,893 copying build/lib/rcsb/exdb/tests/testPubChemEtlWrapper.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,897 copying build/lib/rcsb/exdb/tests/testGlycanEtlWorkflow.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,901 copying build/lib/rcsb/exdb/tests/testObjectExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,905 copying build/lib/rcsb/exdb/tests/testChemRefMappingProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tests 2023-04-13T22:04:30,910 creating build/bdist.linux-armv7l/wheel/rcsb/exdb/chemref 2023-04-13T22:04:30,912 copying build/lib/rcsb/exdb/chemref/PubChemDataCacheProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/chemref 2023-04-13T22:04:30,917 copying build/lib/rcsb/exdb/chemref/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/chemref 2023-04-13T22:04:30,920 copying build/lib/rcsb/exdb/chemref/PubChemIndexCacheProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/chemref 2023-04-13T22:04:30,926 copying build/lib/rcsb/exdb/chemref/PubChemEtlWrapper.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/chemref 2023-04-13T22:04:30,930 copying build/lib/rcsb/exdb/chemref/ChemRefExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/chemref 2023-04-13T22:04:30,935 copying build/lib/rcsb/exdb/chemref/ChemRefEtlWorker.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/chemref 2023-04-13T22:04:30,940 copying build/lib/rcsb/exdb/chemref/ChemRefMappingProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/chemref 2023-04-13T22:04:30,946 creating build/bdist.linux-armv7l/wheel/rcsb/exdb/entry 2023-04-13T22:04:30,948 copying build/lib/rcsb/exdb/entry/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/entry 2023-04-13T22:04:30,952 copying build/lib/rcsb/exdb/entry/EntryInfoProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/entry 2023-04-13T22:04:30,958 creating build/bdist.linux-armv7l/wheel/rcsb/exdb/tree 2023-04-13T22:04:30,960 copying build/lib/rcsb/exdb/tree/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tree 2023-04-13T22:04:30,965 copying build/lib/rcsb/exdb/tree/TreeNodeListWorker.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/tree 2023-04-13T22:04:30,971 creating build/bdist.linux-armv7l/wheel/rcsb/exdb/seq 2023-04-13T22:04:30,974 copying build/lib/rcsb/exdb/seq/UniProtExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/seq 2023-04-13T22:04:30,978 copying build/lib/rcsb/exdb/seq/UniProtCoreEtlWorker.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/seq 2023-04-13T22:04:30,983 copying build/lib/rcsb/exdb/seq/LigandNeighborMappingProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/seq 2023-04-13T22:04:30,988 copying build/lib/rcsb/exdb/seq/ReferenceSequenceCacheProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/seq 2023-04-13T22:04:30,993 copying build/lib/rcsb/exdb/seq/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/seq 2023-04-13T22:04:30,997 copying build/lib/rcsb/exdb/seq/LigandNeighborMappingExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/seq 2023-04-13T22:04:31,001 copying build/lib/rcsb/exdb/seq/ReferenceSequenceAnnotationProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/seq 2023-04-13T22:04:31,005 copying build/lib/rcsb/exdb/seq/ReferenceSequenceAssignmentAdapter.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/seq 2023-04-13T22:04:31,011 copying build/lib/rcsb/exdb/seq/ReferenceSequenceAssignmentProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/seq 2023-04-13T22:04:31,016 copying build/lib/rcsb/exdb/seq/TaxonomyExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/seq 2023-04-13T22:04:31,019 copying build/lib/rcsb/exdb/seq/PolymerEntityExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/seq 2023-04-13T22:04:31,024 copying build/lib/rcsb/exdb/seq/AnnotationExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/seq 2023-04-13T22:04:31,027 copying build/lib/rcsb/exdb/seq/ReferenceSequenceAnnotationAdapter.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/seq 2023-04-13T22:04:31,035 creating build/bdist.linux-armv7l/wheel/rcsb/exdb/citation 2023-04-13T22:04:31,036 copying build/lib/rcsb/exdb/citation/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/citation 2023-04-13T22:04:31,040 copying build/lib/rcsb/exdb/citation/CitationAdapter.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/citation 2023-04-13T22:04:31,043 copying build/lib/rcsb/exdb/citation/CitationExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/citation 2023-04-13T22:04:31,048 copying build/lib/rcsb/exdb/citation/CitationUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/citation 2023-04-13T22:04:31,053 creating build/bdist.linux-armv7l/wheel/rcsb/exdb/branch 2023-04-13T22:04:31,054 copying build/lib/rcsb/exdb/branch/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/branch 2023-04-13T22:04:31,058 copying build/lib/rcsb/exdb/branch/GlycanUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/branch 2023-04-13T22:04:31,062 copying build/lib/rcsb/exdb/branch/GlycanProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/branch 2023-04-13T22:04:31,065 copying build/lib/rcsb/exdb/branch/BranchedEntityExtractor.py -> build/bdist.linux-armv7l/wheel/rcsb/exdb/branch 2023-04-13T22:04:31,069 copying build/lib/rcsb/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb 2023-04-13T22:04:31,072 running install_egg_info 2023-04-13T22:04:31,256 running egg_info 2023-04-13T22:04:31,329 writing rcsb.exdb.egg-info/PKG-INFO 2023-04-13T22:04:31,334 writing dependency_links to rcsb.exdb.egg-info/dependency_links.txt 2023-04-13T22:04:31,338 writing entry points to rcsb.exdb.egg-info/entry_points.txt 2023-04-13T22:04:31,341 writing requirements to rcsb.exdb.egg-info/requires.txt 2023-04-13T22:04:31,344 writing top-level names to rcsb.exdb.egg-info/top_level.txt 2023-04-13T22:04:31,473 reading manifest file 'rcsb.exdb.egg-info/SOURCES.txt' 2023-04-13T22:04:31,483 reading manifest template 'MANIFEST.in' 2023-04-13T22:04:31,485 adding license file 'LICENSE' 2023-04-13T22:04:31,500 writing manifest file 'rcsb.exdb.egg-info/SOURCES.txt' 2023-04-13T22:04:31,503 Copying rcsb.exdb.egg-info to build/bdist.linux-armv7l/wheel/rcsb.exdb-0.96-py3.7.egg-info 2023-04-13T22:04:31,531 running install_scripts 2023-04-13T22:04:31,587 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-04-13T22:04:31,597 creating build/bdist.linux-armv7l/wheel/rcsb.exdb-0.96.dist-info/WHEEL 2023-04-13T22:04:31,602 creating '/tmp/pip-wheel-gtkou39v/rcsb.exdb-0.96-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-04-13T22:04:31,607 adding 'rcsb/__init__.py' 2023-04-13T22:04:31,610 adding 'rcsb/exdb/__init__.py' 2023-04-13T22:04:31,615 adding 'rcsb/exdb/branch/BranchedEntityExtractor.py' 2023-04-13T22:04:31,618 adding 'rcsb/exdb/branch/GlycanProvider.py' 2023-04-13T22:04:31,621 adding 'rcsb/exdb/branch/GlycanUtils.py' 2023-04-13T22:04:31,623 adding 'rcsb/exdb/branch/__init__.py' 2023-04-13T22:04:31,628 adding 'rcsb/exdb/chemref/ChemRefEtlWorker.py' 2023-04-13T22:04:31,631 adding 'rcsb/exdb/chemref/ChemRefExtractor.py' 2023-04-13T22:04:31,634 adding 'rcsb/exdb/chemref/ChemRefMappingProvider.py' 2023-04-13T22:04:31,640 adding 'rcsb/exdb/chemref/PubChemDataCacheProvider.py' 2023-04-13T22:04:31,644 adding 'rcsb/exdb/chemref/PubChemEtlWrapper.py' 2023-04-13T22:04:31,652 adding 'rcsb/exdb/chemref/PubChemIndexCacheProvider.py' 2023-04-13T22:04:31,655 adding 'rcsb/exdb/chemref/__init__.py' 2023-04-13T22:04:31,659 adding 'rcsb/exdb/citation/CitationAdapter.py' 2023-04-13T22:04:31,663 adding 'rcsb/exdb/citation/CitationExtractor.py' 2023-04-13T22:04:31,666 adding 'rcsb/exdb/citation/CitationUtils.py' 2023-04-13T22:04:31,668 adding 'rcsb/exdb/citation/__init__.py' 2023-04-13T22:04:31,673 adding 'rcsb/exdb/cli/ExDbExec.py' 2023-04-13T22:04:31,676 adding 'rcsb/exdb/cli/__init__.py' 2023-04-13T22:04:31,680 adding 'rcsb/exdb/entry/EntryInfoProvider.py' 2023-04-13T22:04:31,682 adding 'rcsb/exdb/entry/__init__.py' 2023-04-13T22:04:31,686 adding 'rcsb/exdb/seq/AnnotationExtractor.py' 2023-04-13T22:04:31,689 adding 'rcsb/exdb/seq/LigandNeighborMappingExtractor.py' 2023-04-13T22:04:31,692 adding 'rcsb/exdb/seq/LigandNeighborMappingProvider.py' 2023-04-13T22:04:31,697 adding 'rcsb/exdb/seq/PolymerEntityExtractor.py' 2023-04-13T22:04:31,704 adding 'rcsb/exdb/seq/ReferenceSequenceAnnotationAdapter.py' 2023-04-13T22:04:31,708 adding 'rcsb/exdb/seq/ReferenceSequenceAnnotationProvider.py' 2023-04-13T22:04:31,715 adding 'rcsb/exdb/seq/ReferenceSequenceAssignmentAdapter.py' 2023-04-13T22:04:31,721 adding 'rcsb/exdb/seq/ReferenceSequenceAssignmentProvider.py' 2023-04-13T22:04:31,727 adding 'rcsb/exdb/seq/ReferenceSequenceCacheProvider.py' 2023-04-13T22:04:31,730 adding 'rcsb/exdb/seq/TaxonomyExtractor.py' 2023-04-13T22:04:31,734 adding 'rcsb/exdb/seq/UniProtCoreEtlWorker.py' 2023-04-13T22:04:31,737 adding 'rcsb/exdb/seq/UniProtExtractor.py' 2023-04-13T22:04:31,739 adding 'rcsb/exdb/seq/__init__.py' 2023-04-13T22:04:31,744 adding 'rcsb/exdb/tests/__init__.py' 2023-04-13T22:04:31,747 adding 'rcsb/exdb/tests/fixtureDictMethodResourceProvider.py' 2023-04-13T22:04:31,751 adding 'rcsb/exdb/tests/fixturePdbxLoader.py' 2023-04-13T22:04:31,754 adding 'rcsb/exdb/tests/testAnnotationExtractor.py' 2023-04-13T22:04:31,757 adding 'rcsb/exdb/tests/testBranchedEntityExtractor.py' 2023-04-13T22:04:31,760 adding 'rcsb/exdb/tests/testChemRefLoader.py' 2023-04-13T22:04:31,763 adding 'rcsb/exdb/tests/testChemRefMappingProvider.py' 2023-04-13T22:04:31,766 adding 'rcsb/exdb/tests/testCitationAdapter.py' 2023-04-13T22:04:31,769 adding 'rcsb/exdb/tests/testCitationExtractor.py' 2023-04-13T22:04:31,772 adding 'rcsb/exdb/tests/testCitationUtils.py' 2023-04-13T22:04:31,775 adding 'rcsb/exdb/tests/testEntryInfoEtlWorkflow.py' 2023-04-13T22:04:31,778 adding 'rcsb/exdb/tests/testEntryInfoProvider.py' 2023-04-13T22:04:31,781 adding 'rcsb/exdb/tests/testExDbWorkflow.py' 2023-04-13T22:04:31,784 adding 'rcsb/exdb/tests/testGlycanEtlWorkflow.py' 2023-04-13T22:04:31,787 adding 'rcsb/exdb/tests/testGlycanProvider.py' 2023-04-13T22:04:31,790 adding 'rcsb/exdb/tests/testGlycanUtils.py' 2023-04-13T22:04:31,793 adding 'rcsb/exdb/tests/testLigandNeighborMappingProvider.py' 2023-04-13T22:04:31,797 adding 'rcsb/exdb/tests/testObjectExtractor.py' 2023-04-13T22:04:31,800 adding 'rcsb/exdb/tests/testObjectTransformer.py' 2023-04-13T22:04:31,803 adding 'rcsb/exdb/tests/testObjectUpdater.py' 2023-04-13T22:04:31,806 adding 'rcsb/exdb/tests/testPolymerEntityExtractor.py' 2023-04-13T22:04:31,810 adding 'rcsb/exdb/tests/testPubChemDataCacheProvider.py' 2023-04-13T22:04:31,813 adding 'rcsb/exdb/tests/testPubChemEtlWorkflow.py' 2023-04-13T22:04:31,816 adding 'rcsb/exdb/tests/testPubChemEtlWrapper.py' 2023-04-13T22:04:31,820 adding 'rcsb/exdb/tests/testPubChemIndexCacheProvider.py' 2023-04-13T22:04:31,823 adding 'rcsb/exdb/tests/testReferenceSequenceAnnotationAdapter.py' 2023-04-13T22:04:31,826 adding 'rcsb/exdb/tests/testReferenceSequenceAssignmentAdapter.py' 2023-04-13T22:04:31,830 adding 'rcsb/exdb/tests/testReferenceSequenceAssignmentAdapterValidate.py' 2023-04-13T22:04:31,833 adding 'rcsb/exdb/tests/testReferenceSequenceAssignmentProvider.py' 2023-04-13T22:04:31,836 adding 'rcsb/exdb/tests/testReferenceSequenceCacheProvider.py' 2023-04-13T22:04:31,839 adding 'rcsb/exdb/tests/testTaxonomyExtractor.py' 2023-04-13T22:04:31,842 adding 'rcsb/exdb/tests/testTreeNodeListWorker.py' 2023-04-13T22:04:31,844 adding 'rcsb/exdb/tests/testUniProtCoreEtlWorker.py' 2023-04-13T22:04:31,847 adding 'rcsb/exdb/tests/testUniProtExtractor.py' 2023-04-13T22:04:31,852 adding 'rcsb/exdb/tree/TreeNodeListWorker.py' 2023-04-13T22:04:31,855 adding 'rcsb/exdb/tree/__init__.py' 2023-04-13T22:04:31,858 adding 'rcsb/exdb/utils/ObjectAdapterBase.py' 2023-04-13T22:04:31,863 adding 'rcsb/exdb/utils/ObjectExtractor.py' 2023-04-13T22:04:31,866 adding 'rcsb/exdb/utils/ObjectTransformer.py' 2023-04-13T22:04:31,870 adding 'rcsb/exdb/utils/ObjectUpdater.py' 2023-04-13T22:04:31,873 adding 'rcsb/exdb/utils/ObjectValidator.py' 2023-04-13T22:04:31,876 adding 'rcsb/exdb/utils/__init__.py' 2023-04-13T22:04:31,880 adding 'rcsb/exdb/wf/EntryInfoEtlWorkflow.py' 2023-04-13T22:04:31,883 adding 'rcsb/exdb/wf/ExDbWorkflow.py' 2023-04-13T22:04:31,887 adding 'rcsb/exdb/wf/GlycanEtlWorkflow.py' 2023-04-13T22:04:31,890 adding 'rcsb/exdb/wf/PubChemEtlWorkflow.py' 2023-04-13T22:04:31,893 adding 'rcsb/exdb/wf/__init__.py' 2023-04-13T22:04:31,900 adding 'rcsb.exdb-0.96.dist-info/LICENSE' 2023-04-13T22:04:31,903 adding 'rcsb.exdb-0.96.dist-info/METADATA' 2023-04-13T22:04:31,906 adding 'rcsb.exdb-0.96.dist-info/WHEEL' 2023-04-13T22:04:31,907 adding 'rcsb.exdb-0.96.dist-info/entry_points.txt' 2023-04-13T22:04:31,909 adding 'rcsb.exdb-0.96.dist-info/top_level.txt' 2023-04-13T22:04:31,912 adding 'rcsb.exdb-0.96.dist-info/RECORD' 2023-04-13T22:04:31,923 removing build/bdist.linux-armv7l/wheel 2023-04-13T22:04:32,121 Building wheel for rcsb-exdb (setup.py): finished with status 'done' 2023-04-13T22:04:32,133 Created wheel for rcsb-exdb: filename=rcsb.exdb-0.96-py2.py3-none-any.whl size=148975 sha256=89ac8bf05225fd2a7665886bb5259ad9419e34d86ad8ffc0ef0c543b91633980 2023-04-13T22:04:32,135 Stored in directory: /tmp/pip-ephem-wheel-cache-4kfjn14m/wheels/c1/df/b4/5c2dc4bb70546973637d24dd897115a3bec9d8f3b21fa65092 2023-04-13T22:04:32,169 Successfully built rcsb-exdb 2023-04-13T22:04:32,188 Removed build tracker: '/tmp/pip-build-tracker-vmhi9c2e'