2023-04-17T11:11:11,508 Created temporary directory: /tmp/pip-ephem-wheel-cache-bu5fvxhh 2023-04-17T11:11:11,513 Created temporary directory: /tmp/pip-build-tracker-m87xvf90 2023-04-17T11:11:11,514 Initialized build tracking at /tmp/pip-build-tracker-m87xvf90 2023-04-17T11:11:11,514 Created build tracker: /tmp/pip-build-tracker-m87xvf90 2023-04-17T11:11:11,515 Entered build tracker: /tmp/pip-build-tracker-m87xvf90 2023-04-17T11:11:11,516 Created temporary directory: /tmp/pip-wheel-m974y67n 2023-04-17T11:11:11,526 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-04-17T11:11:11,532 Created temporary directory: /tmp/pip-ephem-wheel-cache-5mco5a6k 2023-04-17T11:11:11,585 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-04-17T11:11:11,592 2 location(s) to search for versions of ncbi-db: 2023-04-17T11:11:11,592 * https://pypi.org/simple/ncbi-db/ 2023-04-17T11:11:11,592 * https://www.piwheels.org/simple/ncbi-db/ 2023-04-17T11:11:11,593 Fetching project page and analyzing links: https://pypi.org/simple/ncbi-db/ 2023-04-17T11:11:11,594 Getting page https://pypi.org/simple/ncbi-db/ 2023-04-17T11:11:11,597 Found index url https://pypi.org/simple 2023-04-17T11:11:11,821 Fetched page https://pypi.org/simple/ncbi-db/ as application/vnd.pypi.simple.v1+json 2023-04-17T11:11:11,830 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/be/67/b199d222d8fb21a8cc80b22ff1aa641e1fe1ca4655ebd047ccce5497607a/ncbi_db-0.0.2-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:11:11,832 Found link https://files.pythonhosted.org/packages/92/cb/092cd287f82d0671293d15004b7e6591b91c6976e318372adc6a6c79e783/ncbi_db-0.0.2.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.0.2 2023-04-17T11:11:11,833 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/a9/a4/d4d3d4400a740a91deaae4269fcefdf963aef27240f303b586a5a5ce8962/ncbi_db-0.0.3-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:11:11,834 Found link https://files.pythonhosted.org/packages/58/d5/8618e5b857a197cb1967ad04f2bac7a46b7ed5a6137fd6e2054e68b1251a/ncbi_db-0.0.3.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.0.3 2023-04-17T11:11:11,835 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/b0/b4/e3adce346f7aa89b36c19cdd4fa43d4dc883a34c200df82e6cd0dae64693/ncbi_db-0.0.4-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:11:11,836 Found link https://files.pythonhosted.org/packages/8a/f6/88b2cc68f4340923d6c3f8e5b8e669383824d6969d7682583da07b7685a7/ncbi_db-0.0.4.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.0.4 2023-04-17T11:11:11,837 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/72/4c/2e23a142094bdbd1bf4e28387a32a4b68be3b401dea42974ab6c2cca7364/ncbi_db-0.0.5-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:11:11,838 Found link https://files.pythonhosted.org/packages/71/af/a0b4d1cfdb83b48678a85f76980f88b85fa17bf87a916601dbf5eaed3ecf/ncbi_db-0.0.5.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.0.5 2023-04-17T11:11:11,839 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/16/b4/d602529c17856ac111017db7d3a52334139375778403dda60b7205572acc/ncbi_db-0.0.6-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:11:11,840 Found link https://files.pythonhosted.org/packages/f1/cc/0b8e2c16a80a8e8f976bc265cbcc7b238e46fd310491ac0dd34c54bca32a/ncbi_db-0.0.6.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.0.6 2023-04-17T11:11:11,841 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/e7/82/e55fd8d920e6dd185b6894548b15fc0453b1a22338e69e01bad5b56c9f49/ncbi_db-0.0.7-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:11:11,842 Found link https://files.pythonhosted.org/packages/55/16/0ece58be8afbf8a92751b62b0d7d048142e11e8899fa8ee9a50891f66404/ncbi_db-0.0.7.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.0.7 2023-04-17T11:11:11,843 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/c8/7c/7aad45ac3fa56067363658f456e4c17d68e5ae73698a1d84154036d60c90/ncbi_db-0.0.8-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:11:11,844 Found link https://files.pythonhosted.org/packages/b3/1e/964786b4c7b4f813f68827b648ec65f7586e575da236678085155553c46d/ncbi_db-0.0.8.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.0.8 2023-04-17T11:11:11,845 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/41/ad/ece83c378d7a8598216c0f43312ed60a9c1bf979207e4be1ca96631f4aa8/ncbi_db-0.1.0-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:11:11,846 Found link https://files.pythonhosted.org/packages/dd/1b/904e83a7bc25ecc7d4a4c2704100fb49bd21fb1423781c12a696da067c12/ncbi_db-0.1.0.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.1.0 2023-04-17T11:11:11,847 Fetching project page and analyzing links: https://www.piwheels.org/simple/ncbi-db/ 2023-04-17T11:11:11,847 Getting page https://www.piwheels.org/simple/ncbi-db/ 2023-04-17T11:11:11,850 Found index url https://www.piwheels.org/simple 2023-04-17T11:11:12,097 Fetched page https://www.piwheels.org/simple/ncbi-db/ as text/html 2023-04-17T11:11:12,103 Skipping link: No binaries permitted for ncbi-db: https://www.piwheels.org/simple/ncbi-db/ncbi_db-0.0.7-py3-none-any.whl#sha256=66b931737bd32e716a4ce6424fb7295a4d724d6a977e40320303302cf429866c (from https://www.piwheels.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:11:12,104 Skipping link: No binaries permitted for ncbi-db: https://www.piwheels.org/simple/ncbi-db/ncbi_db-0.0.6-py3-none-any.whl#sha256=929975a29f62c773d5e82ba2320af594ab5cdd40134eac07baf3a545ed277804 (from https://www.piwheels.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:11:12,104 Skipping link: No binaries permitted for ncbi-db: https://www.piwheels.org/simple/ncbi-db/ncbi_db-0.0.5-py3-none-any.whl#sha256=eb5916ad6eca10fa6e55b0bb1ede32bd1efee4969172b723d1b91f5e3e995b57 (from https://www.piwheels.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:11:12,105 Skipping link: No binaries permitted for ncbi-db: https://www.piwheels.org/simple/ncbi-db/ncbi_db-0.0.4-py3-none-any.whl#sha256=97655eac843796ca5a09d6b2a9a849975a6b596ba3955ab52c4fde9aab4df828 (from https://www.piwheels.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:11:12,105 Skipping link: No binaries permitted for ncbi-db: https://www.piwheels.org/simple/ncbi-db/ncbi_db-0.0.3-py3-none-any.whl#sha256=4c0251c18449eb204b23e6e551987aa871a63d0b002446cca46840d55278b2a3 (from https://www.piwheels.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:11:12,106 Skipping link: No binaries permitted for ncbi-db: https://www.piwheels.org/simple/ncbi-db/ncbi_db-0.0.2-py3-none-any.whl#sha256=e6cb31bccda66e79232fef6d571d9e92a1b9c8eedbfcd4975f0ed01c74db813f (from https://www.piwheels.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:11:12,106 Skipping link: not a file: https://www.piwheels.org/simple/ncbi-db/ 2023-04-17T11:11:12,107 Skipping link: not a file: https://pypi.org/simple/ncbi-db/ 2023-04-17T11:11:12,142 Given no hashes to check 1 links for project 'ncbi-db': discarding no candidates 2023-04-17T11:11:12,172 Collecting ncbi-db==0.0.8 2023-04-17T11:11:12,176 Created temporary directory: /tmp/pip-unpack-d9i4jg3n 2023-04-17T11:11:12,357 Downloading ncbi_db-0.0.8.tar.gz (132 kB) 2023-04-17T11:11:12,589 Added ncbi-db==0.0.8 from https://files.pythonhosted.org/packages/b3/1e/964786b4c7b4f813f68827b648ec65f7586e575da236678085155553c46d/ncbi_db-0.0.8.tar.gz to build tracker '/tmp/pip-build-tracker-m87xvf90' 2023-04-17T11:11:12,597 Created temporary directory: /tmp/pip-build-env-pj9fcopj 2023-04-17T11:11:12,622 Installing build dependencies: started 2023-04-17T11:11:12,625 Running command pip subprocess to install build dependencies 2023-04-17T11:11:15,419 Using pip 23.0.1 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7) 2023-04-17T11:11:16,872 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-04-17T11:11:16,929 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-04-17T11:11:20,911 Collecting setuptools>=42 2023-04-17T11:11:21,157 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.6.1-py3-none-any.whl (1.1 MB) 2023-04-17T11:11:22,002 Collecting wheel 2023-04-17T11:11:22,044 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-04-17T11:11:31,016 Installing collected packages: wheel, setuptools 2023-04-17T11:11:31,376 Creating /tmp/pip-build-env-pj9fcopj/overlay/bin 2023-04-17T11:11:31,394 ERROR: Could not install packages due to an OSError. 2023-04-17T11:11:31,395 Traceback (most recent call last): 2023-04-17T11:11:31,395 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/install.py", line 516, in run 2023-04-17T11:11:31,396 pycompile=options.compile, 2023-04-17T11:11:31,396 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/req/__init__.py", line 81, in install_given_reqs 2023-04-17T11:11:31,396 pycompile=pycompile, 2023-04-17T11:11:31,397 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/req/req_install.py", line 804, in install 2023-04-17T11:11:31,397 requested=self.user_supplied, 2023-04-17T11:11:31,397 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/install/wheel.py", line 737, in install_wheel 2023-04-17T11:11:31,397 requested=requested, 2023-04-17T11:11:31,398 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/install/wheel.py", line 646, in _install_wheel 2023-04-17T11:11:31,398 generated_console_scripts = maker.make_multiple(scripts_to_generate) 2023-04-17T11:11:31,399 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/distlib/scripts.py", line 436, in make_multiple 2023-04-17T11:11:31,399 filenames.extend(self.make(specification, options)) 2023-04-17T11:11:31,399 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/install/wheel.py", line 427, in make 2023-04-17T11:11:31,399 return super().make(specification, options) 2023-04-17T11:11:31,400 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/distlib/scripts.py", line 425, in make 2023-04-17T11:11:31,400 self._make_script(entry, filenames, options=options) 2023-04-17T11:11:31,400 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/distlib/scripts.py", line 325, in _make_script 2023-04-17T11:11:31,401 self._write_script(scriptnames, shebang, script, filenames, ext) 2023-04-17T11:11:31,401 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/distlib/scripts.py", line 293, in _write_script 2023-04-17T11:11:31,401 self._fileop.write_binary_file(outname, script_bytes) 2023-04-17T11:11:31,402 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/distlib/util.py", line 552, in write_binary_file 2023-04-17T11:11:31,402 self.ensure_dir(os.path.dirname(path)) 2023-04-17T11:11:31,402 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/distlib/util.py", line 585, in ensure_dir 2023-04-17T11:11:31,403 os.mkdir(path) 2023-04-17T11:11:31,403 OSError: [Errno 28] No space left on device: '/tmp/pip-build-env-pj9fcopj/overlay/bin' 2023-04-17T11:11:32,398 ERROR: [present-rich] pip subprocess to install build dependencies exited with 1 2023-04-17T11:11:32,443 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/__pip-runner__.py install --ignore-installed --no-user --prefix /tmp/pip-build-env-pj9fcopj/overlay --no-warn-script-location -v --no-binary ncbi-db --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'setuptools>=42' wheel[/] 2023-04-17T11:11:32,443 [bold magenta]cwd[/]: \[inherit] 2023-04-17T11:11:32,444 Installing build dependencies: finished with status 'error' 2023-04-17T11:11:32,447 ERROR: [present-rich] pip subprocess to install build dependencies exited with 1 2023-04-17T11:11:32,461 Exception information: 2023-04-17T11:11:32,461 Traceback (most recent call last): 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2023-04-17T11:11:32,461 status = run_func(*args) 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2023-04-17T11:11:32,461 return func(self, options, args) 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 170, in run 2023-04-17T11:11:32,461 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 93, in resolve 2023-04-17T11:11:32,461 collected.requirements, max_rounds=try_to_avoid_resolution_too_deep 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 481, in resolve 2023-04-17T11:11:32,461 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 348, in resolve 2023-04-17T11:11:32,461 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 172, in _add_to_criteria 2023-04-17T11:11:32,461 if not criterion.candidates: 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/structs.py", line 151, in __bool__ 2023-04-17T11:11:32,461 return bool(self._sequence) 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-04-17T11:11:32,461 return any(self) 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-04-17T11:11:32,461 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-04-17T11:11:32,461 candidate = func() 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 211, in _make_candidate_from_link 2023-04-17T11:11:32,461 version=version, 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 303, in __init__ 2023-04-17T11:11:32,461 version=version, 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 162, in __init__ 2023-04-17T11:11:32,461 self.dist = self._prepare() 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 231, in _prepare 2023-04-17T11:11:32,461 dist = self._prepare_distribution() 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 308, in _prepare_distribution 2023-04-17T11:11:32,461 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/prepare.py", line 491, in prepare_linked_requirement 2023-04-17T11:11:32,461 return self._prepare_linked_requirement(req, parallel_builds) 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/prepare.py", line 582, in _prepare_linked_requirement 2023-04-17T11:11:32,461 self.check_build_deps, 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/prepare.py", line 70, in _get_prepared_distribution 2023-04-17T11:11:32,461 finder, build_isolation, check_build_deps 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/distributions/sdist.py", line 38, in prepare_distribution_metadata 2023-04-17T11:11:32,461 self._prepare_build_backend(finder) 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/distributions/sdist.py", line 71, in _prepare_build_backend 2023-04-17T11:11:32,461 finder, pyproject_requires, "overlay", kind="build dependencies" 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/build_env.py", line 222, in install_requirements 2023-04-17T11:11:32,461 kind=kind, 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/build_env.py", line 279, in _install_requirements 2023-04-17T11:11:32,461 extra_environ=extra_environ, 2023-04-17T11:11:32,461 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-04-17T11:11:32,461 raise error 2023-04-17T11:11:32,461 pip._internal.exceptions.InstallationSubprocessError: pip subprocess to install build dependencies exited with 1 2023-04-17T11:11:32,482 Removed ncbi-db==0.0.8 from https://files.pythonhosted.org/packages/b3/1e/964786b4c7b4f813f68827b648ec65f7586e575da236678085155553c46d/ncbi_db-0.0.8.tar.gz from build tracker '/tmp/pip-build-tracker-m87xvf90' 2023-04-17T11:11:32,483 Removed build tracker: '/tmp/pip-build-tracker-m87xvf90'