2023-04-17T11:24:32,211 Created temporary directory: /tmp/pip-ephem-wheel-cache-p4_kikdr 2023-04-17T11:24:32,216 Created temporary directory: /tmp/pip-build-tracker-ria9_li_ 2023-04-17T11:24:32,217 Initialized build tracking at /tmp/pip-build-tracker-ria9_li_ 2023-04-17T11:24:32,218 Created build tracker: /tmp/pip-build-tracker-ria9_li_ 2023-04-17T11:24:32,218 Entered build tracker: /tmp/pip-build-tracker-ria9_li_ 2023-04-17T11:24:32,219 Created temporary directory: /tmp/pip-wheel-k34ne5a5 2023-04-17T11:24:32,230 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-04-17T11:24:32,235 Created temporary directory: /tmp/pip-ephem-wheel-cache-xyn1de3g 2023-04-17T11:24:32,289 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-04-17T11:24:32,296 2 location(s) to search for versions of ncbi-db: 2023-04-17T11:24:32,296 * https://pypi.org/simple/ncbi-db/ 2023-04-17T11:24:32,296 * https://www.piwheels.org/simple/ncbi-db/ 2023-04-17T11:24:32,297 Fetching project page and analyzing links: https://pypi.org/simple/ncbi-db/ 2023-04-17T11:24:32,298 Getting page https://pypi.org/simple/ncbi-db/ 2023-04-17T11:24:32,302 Found index url https://pypi.org/simple 2023-04-17T11:24:32,421 Fetched page https://pypi.org/simple/ncbi-db/ as application/vnd.pypi.simple.v1+json 2023-04-17T11:24:32,431 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/be/67/b199d222d8fb21a8cc80b22ff1aa641e1fe1ca4655ebd047ccce5497607a/ncbi_db-0.0.2-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:24:32,432 Found link https://files.pythonhosted.org/packages/92/cb/092cd287f82d0671293d15004b7e6591b91c6976e318372adc6a6c79e783/ncbi_db-0.0.2.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.0.2 2023-04-17T11:24:32,433 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/a9/a4/d4d3d4400a740a91deaae4269fcefdf963aef27240f303b586a5a5ce8962/ncbi_db-0.0.3-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:24:32,434 Found link https://files.pythonhosted.org/packages/58/d5/8618e5b857a197cb1967ad04f2bac7a46b7ed5a6137fd6e2054e68b1251a/ncbi_db-0.0.3.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.0.3 2023-04-17T11:24:32,435 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/b0/b4/e3adce346f7aa89b36c19cdd4fa43d4dc883a34c200df82e6cd0dae64693/ncbi_db-0.0.4-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:24:32,436 Found link https://files.pythonhosted.org/packages/8a/f6/88b2cc68f4340923d6c3f8e5b8e669383824d6969d7682583da07b7685a7/ncbi_db-0.0.4.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.0.4 2023-04-17T11:24:32,437 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/72/4c/2e23a142094bdbd1bf4e28387a32a4b68be3b401dea42974ab6c2cca7364/ncbi_db-0.0.5-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:24:32,438 Found link https://files.pythonhosted.org/packages/71/af/a0b4d1cfdb83b48678a85f76980f88b85fa17bf87a916601dbf5eaed3ecf/ncbi_db-0.0.5.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.0.5 2023-04-17T11:24:32,439 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/16/b4/d602529c17856ac111017db7d3a52334139375778403dda60b7205572acc/ncbi_db-0.0.6-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:24:32,440 Found link https://files.pythonhosted.org/packages/f1/cc/0b8e2c16a80a8e8f976bc265cbcc7b238e46fd310491ac0dd34c54bca32a/ncbi_db-0.0.6.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.0.6 2023-04-17T11:24:32,441 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/e7/82/e55fd8d920e6dd185b6894548b15fc0453b1a22338e69e01bad5b56c9f49/ncbi_db-0.0.7-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:24:32,442 Found link https://files.pythonhosted.org/packages/55/16/0ece58be8afbf8a92751b62b0d7d048142e11e8899fa8ee9a50891f66404/ncbi_db-0.0.7.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.0.7 2023-04-17T11:24:32,443 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/c8/7c/7aad45ac3fa56067363658f456e4c17d68e5ae73698a1d84154036d60c90/ncbi_db-0.0.8-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:24:32,444 Found link https://files.pythonhosted.org/packages/b3/1e/964786b4c7b4f813f68827b648ec65f7586e575da236678085155553c46d/ncbi_db-0.0.8.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.0.8 2023-04-17T11:24:32,445 Skipping link: No binaries permitted for ncbi-db: https://files.pythonhosted.org/packages/41/ad/ece83c378d7a8598216c0f43312ed60a9c1bf979207e4be1ca96631f4aa8/ncbi_db-0.1.0-py3-none-any.whl (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:24:32,446 Found link https://files.pythonhosted.org/packages/dd/1b/904e83a7bc25ecc7d4a4c2704100fb49bd21fb1423781c12a696da067c12/ncbi_db-0.1.0.tar.gz (from https://pypi.org/simple/ncbi-db/) (requires-python:>=3.6), version: 0.1.0 2023-04-17T11:24:32,447 Fetching project page and analyzing links: https://www.piwheels.org/simple/ncbi-db/ 2023-04-17T11:24:32,448 Getting page https://www.piwheels.org/simple/ncbi-db/ 2023-04-17T11:24:32,450 Found index url https://www.piwheels.org/simple 2023-04-17T11:24:32,667 Fetched page https://www.piwheels.org/simple/ncbi-db/ as text/html 2023-04-17T11:24:32,674 Skipping link: No binaries permitted for ncbi-db: https://www.piwheels.org/simple/ncbi-db/ncbi_db-0.0.8-py3-none-any.whl#sha256=85997a6a196cdb318160aae3fc1f61fa3b49e46d107865a7636784ff44f6aa33 (from https://www.piwheels.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:24:32,675 Skipping link: No binaries permitted for ncbi-db: https://www.piwheels.org/simple/ncbi-db/ncbi_db-0.0.7-py3-none-any.whl#sha256=66b931737bd32e716a4ce6424fb7295a4d724d6a977e40320303302cf429866c (from https://www.piwheels.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:24:32,675 Skipping link: No binaries permitted for ncbi-db: https://www.piwheels.org/simple/ncbi-db/ncbi_db-0.0.6-py3-none-any.whl#sha256=929975a29f62c773d5e82ba2320af594ab5cdd40134eac07baf3a545ed277804 (from https://www.piwheels.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:24:32,676 Skipping link: No binaries permitted for ncbi-db: https://www.piwheels.org/simple/ncbi-db/ncbi_db-0.0.5-py3-none-any.whl#sha256=eb5916ad6eca10fa6e55b0bb1ede32bd1efee4969172b723d1b91f5e3e995b57 (from https://www.piwheels.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:24:32,676 Skipping link: No binaries permitted for ncbi-db: https://www.piwheels.org/simple/ncbi-db/ncbi_db-0.0.4-py3-none-any.whl#sha256=97655eac843796ca5a09d6b2a9a849975a6b596ba3955ab52c4fde9aab4df828 (from https://www.piwheels.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:24:32,677 Skipping link: No binaries permitted for ncbi-db: https://www.piwheels.org/simple/ncbi-db/ncbi_db-0.0.3-py3-none-any.whl#sha256=4c0251c18449eb204b23e6e551987aa871a63d0b002446cca46840d55278b2a3 (from https://www.piwheels.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:24:32,677 Skipping link: No binaries permitted for ncbi-db: https://www.piwheels.org/simple/ncbi-db/ncbi_db-0.0.2-py3-none-any.whl#sha256=e6cb31bccda66e79232fef6d571d9e92a1b9c8eedbfcd4975f0ed01c74db813f (from https://www.piwheels.org/simple/ncbi-db/) (requires-python:>=3.6) 2023-04-17T11:24:32,678 Skipping link: not a file: https://www.piwheels.org/simple/ncbi-db/ 2023-04-17T11:24:32,678 Skipping link: not a file: https://pypi.org/simple/ncbi-db/ 2023-04-17T11:24:32,714 Given no hashes to check 1 links for project 'ncbi-db': discarding no candidates 2023-04-17T11:24:32,744 Collecting ncbi-db==0.1.0 2023-04-17T11:24:32,749 Created temporary directory: /tmp/pip-unpack-v_98uuir 2023-04-17T11:24:32,920 Downloading ncbi_db-0.1.0.tar.gz (132 kB) 2023-04-17T11:24:33,150 Added ncbi-db==0.1.0 from https://files.pythonhosted.org/packages/dd/1b/904e83a7bc25ecc7d4a4c2704100fb49bd21fb1423781c12a696da067c12/ncbi_db-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-ria9_li_' 2023-04-17T11:24:33,159 Created temporary directory: /tmp/pip-build-env-jke_7mek 2023-04-17T11:24:33,179 Installing build dependencies: started 2023-04-17T11:24:33,181 Running command pip subprocess to install build dependencies 2023-04-17T11:24:36,000 Using pip 23.0.1 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7) 2023-04-17T11:24:37,470 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-04-17T11:24:37,528 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-04-17T11:24:41,499 Collecting setuptools>=42 2023-04-17T11:24:41,707 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.6.1-py3-none-any.whl (1.1 MB) 2023-04-17T11:24:42,350 Collecting wheel 2023-04-17T11:24:42,387 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-04-17T11:24:51,409 Installing collected packages: wheel, setuptools 2023-04-17T11:24:51,557 ERROR: Could not install packages due to an OSError. 2023-04-17T11:24:51,558 Traceback (most recent call last): 2023-04-17T11:24:51,558 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/install.py", line 516, in run 2023-04-17T11:24:51,559 pycompile=options.compile, 2023-04-17T11:24:51,559 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/req/__init__.py", line 81, in install_given_reqs 2023-04-17T11:24:51,559 pycompile=pycompile, 2023-04-17T11:24:51,560 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/req/req_install.py", line 804, in install 2023-04-17T11:24:51,560 requested=self.user_supplied, 2023-04-17T11:24:51,560 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/install/wheel.py", line 737, in install_wheel 2023-04-17T11:24:51,561 requested=requested, 2023-04-17T11:24:51,561 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/install/wheel.py", line 589, in _install_wheel 2023-04-17T11:24:51,561 file.save() 2023-04-17T11:24:51,561 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/install/wheel.py", line 388, in save 2023-04-17T11:24:51,562 shutil.copyfileobj(f, dest) 2023-04-17T11:24:51,562 OSError: [Errno 28] No space left on device 2023-04-17T11:24:52,562 ERROR: [present-rich] pip subprocess to install build dependencies exited with 1 2023-04-17T11:24:52,606 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.7/dist-packages/pip/__pip-runner__.py install --ignore-installed --no-user --prefix /tmp/pip-build-env-jke_7mek/overlay --no-warn-script-location -v --no-binary ncbi-db --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'setuptools>=42' wheel[/] 2023-04-17T11:24:52,607 [bold magenta]cwd[/]: \[inherit] 2023-04-17T11:24:52,607 Installing build dependencies: finished with status 'error' 2023-04-17T11:24:52,610 ERROR: [present-rich] pip subprocess to install build dependencies exited with 1 2023-04-17T11:24:52,624 Exception information: 2023-04-17T11:24:52,624 Traceback (most recent call last): 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2023-04-17T11:24:52,624 status = run_func(*args) 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2023-04-17T11:24:52,624 return func(self, options, args) 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 170, in run 2023-04-17T11:24:52,624 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 93, in resolve 2023-04-17T11:24:52,624 collected.requirements, max_rounds=try_to_avoid_resolution_too_deep 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 481, in resolve 2023-04-17T11:24:52,624 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 348, in resolve 2023-04-17T11:24:52,624 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 172, in _add_to_criteria 2023-04-17T11:24:52,624 if not criterion.candidates: 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_vendor/resolvelib/structs.py", line 151, in __bool__ 2023-04-17T11:24:52,624 return bool(self._sequence) 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-04-17T11:24:52,624 return any(self) 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-04-17T11:24:52,624 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-04-17T11:24:52,624 candidate = func() 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 211, in _make_candidate_from_link 2023-04-17T11:24:52,624 version=version, 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 303, in __init__ 2023-04-17T11:24:52,624 version=version, 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 162, in __init__ 2023-04-17T11:24:52,624 self.dist = self._prepare() 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 231, in _prepare 2023-04-17T11:24:52,624 dist = self._prepare_distribution() 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 308, in _prepare_distribution 2023-04-17T11:24:52,624 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/prepare.py", line 491, in prepare_linked_requirement 2023-04-17T11:24:52,624 return self._prepare_linked_requirement(req, parallel_builds) 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/prepare.py", line 582, in _prepare_linked_requirement 2023-04-17T11:24:52,624 self.check_build_deps, 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/prepare.py", line 70, in _get_prepared_distribution 2023-04-17T11:24:52,624 finder, build_isolation, check_build_deps 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/distributions/sdist.py", line 38, in prepare_distribution_metadata 2023-04-17T11:24:52,624 self._prepare_build_backend(finder) 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/distributions/sdist.py", line 71, in _prepare_build_backend 2023-04-17T11:24:52,624 finder, pyproject_requires, "overlay", kind="build dependencies" 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/build_env.py", line 222, in install_requirements 2023-04-17T11:24:52,624 kind=kind, 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/build_env.py", line 279, in _install_requirements 2023-04-17T11:24:52,624 extra_environ=extra_environ, 2023-04-17T11:24:52,624 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-04-17T11:24:52,624 raise error 2023-04-17T11:24:52,624 pip._internal.exceptions.InstallationSubprocessError: pip subprocess to install build dependencies exited with 1 2023-04-17T11:24:52,645 Removed ncbi-db==0.1.0 from https://files.pythonhosted.org/packages/dd/1b/904e83a7bc25ecc7d4a4c2704100fb49bd21fb1423781c12a696da067c12/ncbi_db-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-ria9_li_' 2023-04-17T11:24:52,646 Removed build tracker: '/tmp/pip-build-tracker-ria9_li_'