2023-04-19T08:59:38,081 Created temporary directory: /tmp/pip-ephem-wheel-cache-5cdf6znp 2023-04-19T08:59:38,084 Created temporary directory: /tmp/pip-build-tracker-bqcziy5j 2023-04-19T08:59:38,084 Initialized build tracking at /tmp/pip-build-tracker-bqcziy5j 2023-04-19T08:59:38,085 Created build tracker: /tmp/pip-build-tracker-bqcziy5j 2023-04-19T08:59:38,085 Entered build tracker: /tmp/pip-build-tracker-bqcziy5j 2023-04-19T08:59:38,085 Created temporary directory: /tmp/pip-wheel-4t8gyrly 2023-04-19T08:59:38,090 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-04-19T08:59:38,093 Created temporary directory: /tmp/pip-ephem-wheel-cache-uyf6l2_o 2023-04-19T08:59:38,123 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-04-19T08:59:38,126 2 location(s) to search for versions of scipion-em-xmipptomo: 2023-04-19T08:59:38,126 * https://pypi.org/simple/scipion-em-xmipptomo/ 2023-04-19T08:59:38,126 * https://www.piwheels.org/simple/scipion-em-xmipptomo/ 2023-04-19T08:59:38,127 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-xmipptomo/ 2023-04-19T08:59:38,127 Getting page https://pypi.org/simple/scipion-em-xmipptomo/ 2023-04-19T08:59:38,129 Found index url https://pypi.org/simple 2023-04-19T08:59:38,182 Fetched page https://pypi.org/simple/scipion-em-xmipptomo/ as application/vnd.pypi.simple.v1+json 2023-04-19T08:59:38,186 Found link https://files.pythonhosted.org/packages/0a/3b/99c04d2021d8c57dcad19a7972247afbaa319d8f92ebe0ccc5fe1537e0eb/scipion-em-xmipptomo-3.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.0.1 2023-04-19T08:59:38,187 Found link https://files.pythonhosted.org/packages/27/64/d40193fd0a057ee5a2fc89e6f7410dc2b717d43ea52f34d9c23dd08ff6d0/scipion-em-xmipptomo-3.0.6.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.0.6 2023-04-19T08:59:38,187 Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/ae/ed/e3f33b840e6c17858336985ca3c4fee15b950b31c24af8788cca213497fd/scipion_em_xmipptomo-3.0.6-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/) 2023-04-19T08:59:38,187 Found link https://files.pythonhosted.org/packages/3d/88/73be5c7744285de689697037546aa9df14c3050ee233723c4ca781e3409e/scipion-em-xmipptomo-3.0.7.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.0.7 2023-04-19T08:59:38,188 Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/9a/ae/14d91ca0cc0f1f438ff5bfc929df0caab52af28a513f6b7266241173e607/scipion_em_xmipptomo-3.0.7-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/) 2023-04-19T08:59:38,188 Found link https://files.pythonhosted.org/packages/7d/7b/4475d59f7badaf6bbb8c82381a0dd2ccac6fb9d350d64614c0e0bb063e63/scipion-em-xmipptomo-3.0.8.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.0.8 2023-04-19T08:59:38,188 Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/1b/2e/5cb9cc8b8a553eafed15b579905e4a336ecdd3c515ba69dc2779f74d499f/scipion_em_xmipptomo-3.0.8-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/) 2023-04-19T08:59:38,188 Found link https://files.pythonhosted.org/packages/ca/4b/aeffc69065ba65247af63f5089408258beb9bee5ea48bb7c18605ba6f9d0/scipion-em-xmipptomo-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.1.0 2023-04-19T08:59:38,189 Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/fe/7a/4a8c1a69f015e225b986b3f99e50f5a24e3f2d7255397352adac4f9bc695/scipion_em_xmipptomo-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/) 2023-04-19T08:59:38,189 Found link https://files.pythonhosted.org/packages/d9/f8/a220d52a64011d150dfb02ce3d2b21d0719dd9dfb6616106ba215604f5c0/scipion-em-xmipptomo-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.1.1 2023-04-19T08:59:38,189 Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/f5/ee/3850f1a15b9fd937e5d9da8544811248d04fc51cea4801c816af83038844/scipion_em_xmipptomo-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/) 2023-04-19T08:59:38,190 Found link https://files.pythonhosted.org/packages/00/cd/5c2c4bcaf4ae70e04ecf2242cf537085bab878e6db5b8e2ea0001e658392/scipion-em-xmipptomo-3.1.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.1.2 2023-04-19T08:59:38,190 Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/b2/b3/cbdba736af1a7156f21780617909fd5eadf0d2227d9bdffee85d5baa0779/scipion_em_xmipptomo-3.1.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/) 2023-04-19T08:59:38,190 Found link https://files.pythonhosted.org/packages/52/05/422a767a40fac3c1009cf0a22989b7fe690510626685beca23205c14c70d/scipion-em-xmipptomo-3.23.3.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.23.3.0 2023-04-19T08:59:38,190 Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/df/3e/1c40b83fdf23585a779a3928d64c0192a80b01424d9966f9f18f90f54387/scipion_em_xmipptomo-3.23.3.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/) 2023-04-19T08:59:38,191 Found link https://files.pythonhosted.org/packages/ec/65/e28c7319218bbf477a7417c6bf61b53a9080996bdd54d62e9a883f8d6774/scipion-em-xmipptomo-3.23.3.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.23.3.1 2023-04-19T08:59:38,191 Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/d9/70/a9daba52d90862ed58420dd4304057f5a52f59acddd67af72383fd627963/scipion_em_xmipptomo-3.23.3.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/) 2023-04-19T08:59:38,191 Found link https://files.pythonhosted.org/packages/df/e6/bf2b00848378b6f1a576a087ac0c7dddd3bc4ae5939616530cfc90e172f9/scipion-em-xmipptomo-3.23.3.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.23.3.2 2023-04-19T08:59:38,191 Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/48/ad/5296ad0621a3b9129285dbc4a16d0bf57810d817d07abedf7371bb62b2ca/scipion_em_xmipptomo-3.23.3.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/) 2023-04-19T08:59:38,192 Found link https://files.pythonhosted.org/packages/be/03/99f1635c0a4d72062697298a9a2f5557ddd26bd0c74c012b8a86517ae5b5/scipion-em-xmipptomo-3.23.3.3.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.23.3.3 2023-04-19T08:59:38,192 Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/45/b1/cdf6efb76815ff3f57ed30bd82b1f8087f75292001f08f9c7ac5c44eb720/scipion_em_xmipptomo-3.23.3.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/) 2023-04-19T08:59:38,192 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-xmipptomo/ 2023-04-19T08:59:38,192 Getting page https://www.piwheels.org/simple/scipion-em-xmipptomo/ 2023-04-19T08:59:38,193 Found index url https://www.piwheels.org/simple 2023-04-19T08:59:38,352 Fetched page https://www.piwheels.org/simple/scipion-em-xmipptomo/ as text/html 2023-04-19T08:59:38,354 Skipping link: No binaries permitted for scipion-em-xmipptomo: https://www.piwheels.org/simple/scipion-em-xmipptomo/scipion_em_xmipptomo-3.0.8-py3-none-any.whl#sha256=8dc8799c9ed82f2b8469812e162c0d407dcff84fc93d5216818e2bf5884f8e8f (from https://www.piwheels.org/simple/scipion-em-xmipptomo/) 2023-04-19T08:59:38,354 Skipping link: No binaries permitted for scipion-em-xmipptomo: https://www.piwheels.org/simple/scipion-em-xmipptomo/scipion_em_xmipptomo-3.0.7-py3-none-any.whl#sha256=3a9ca36b488c80e4a4ee6d6b71b191deb711a559ff1b47567b528f41ba8b6fbd (from https://www.piwheels.org/simple/scipion-em-xmipptomo/) 2023-04-19T08:59:38,354 Skipping link: No binaries permitted for scipion-em-xmipptomo: https://www.piwheels.org/simple/scipion-em-xmipptomo/scipion_em_xmipptomo-3.0.6-py3-none-any.whl#sha256=85556169e812654e310a5ed6708f1224a81b9874f5a1cffa4a3461be06ade11a (from https://www.piwheels.org/simple/scipion-em-xmipptomo/) 2023-04-19T08:59:38,355 Skipping link: No binaries permitted for scipion-em-xmipptomo: https://www.piwheels.org/simple/scipion-em-xmipptomo/scipion_em_xmipptomo-3.0.1-py3-none-any.whl#sha256=fbc2f497ddefc373167f50ca1b95de2efcc45b499e624671f6552e959ccda926 (from https://www.piwheels.org/simple/scipion-em-xmipptomo/) 2023-04-19T08:59:38,355 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-xmipptomo/ 2023-04-19T08:59:38,355 Skipping link: not a file: https://pypi.org/simple/scipion-em-xmipptomo/ 2023-04-19T08:59:38,375 Given no hashes to check 1 links for project 'scipion-em-xmipptomo': discarding no candidates 2023-04-19T08:59:38,393 Collecting scipion-em-xmipptomo==3.23.3.3 2023-04-19T08:59:38,395 Created temporary directory: /tmp/pip-unpack-sf7wge0b 2023-04-19T08:59:38,440 Downloading scipion-em-xmipptomo-3.23.3.3.tar.gz (146 kB) 2023-04-19T08:59:38,629 Added scipion-em-xmipptomo==3.23.3.3 from https://files.pythonhosted.org/packages/be/03/99f1635c0a4d72062697298a9a2f5557ddd26bd0c74c012b8a86517ae5b5/scipion-em-xmipptomo-3.23.3.3.tar.gz to build tracker '/tmp/pip-build-tracker-bqcziy5j' 2023-04-19T08:59:38,631 Running setup.py (path:/tmp/pip-wheel-4t8gyrly/scipion-em-xmipptomo_a55ade962eb849ad892bbea64e1fb3e3/setup.py) egg_info for package scipion-em-xmipptomo 2023-04-19T08:59:38,631 Created temporary directory: /tmp/pip-pip-egg-info-qip669bu 2023-04-19T08:59:38,632 Preparing metadata (setup.py): started 2023-04-19T08:59:38,633 Running command python setup.py egg_info 2023-04-19T08:59:39,150 Traceback (most recent call last): 2023-04-19T08:59:39,150 File "", line 2, in 2023-04-19T08:59:39,151 File "", line 34, in 2023-04-19T08:59:39,151 File "/tmp/pip-wheel-4t8gyrly/scipion-em-xmipptomo_a55ade962eb849ad892bbea64e1fb3e3/setup.py", line 13, in 2023-04-19T08:59:39,151 from xmipptomo import __version__ 2023-04-19T08:59:39,151 File "/tmp/pip-wheel-4t8gyrly/scipion-em-xmipptomo_a55ade962eb849ad892bbea64e1fb3e3/xmipptomo/__init__.py", line 26, in 2023-04-19T08:59:39,151 import xmipp3 2023-04-19T08:59:39,152 ModuleNotFoundError: No module named 'xmipp3' 2023-04-19T08:59:39,198 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-04-19T08:59:39,216 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-04-19T08:59:39,216 exec(compile('"'"''"'"''"'"' 2023-04-19T08:59:39,216 # This is -- a caller that pip uses to run setup.py 2023-04-19T08:59:39,216 # 2023-04-19T08:59:39,216 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-04-19T08:59:39,216 # import from `distutils.core` to work with newer packaging standards. 2023-04-19T08:59:39,216 # - It provides a clear error message when setuptools is not installed. 2023-04-19T08:59:39,216 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-04-19T08:59:39,216 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-04-19T08:59:39,216 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-04-19T08:59:39,216 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-04-19T08:59:39,216 import os, sys, tokenize 2023-04-19T08:59:39,216 2023-04-19T08:59:39,216 try: 2023-04-19T08:59:39,216 import setuptools 2023-04-19T08:59:39,216 except ImportError as error: 2023-04-19T08:59:39,216 print( 2023-04-19T08:59:39,216 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-04-19T08:59:39,216 "the build environment.", 2023-04-19T08:59:39,216 file=sys.stderr, 2023-04-19T08:59:39,216 ) 2023-04-19T08:59:39,216 sys.exit(1) 2023-04-19T08:59:39,216 2023-04-19T08:59:39,216 __file__ = %r 2023-04-19T08:59:39,216 sys.argv[0] = __file__ 2023-04-19T08:59:39,216 2023-04-19T08:59:39,216 if os.path.exists(__file__): 2023-04-19T08:59:39,216 filename = __file__ 2023-04-19T08:59:39,216 with tokenize.open(__file__) as f: 2023-04-19T08:59:39,216 setup_py_code = f.read() 2023-04-19T08:59:39,216 else: 2023-04-19T08:59:39,216 filename = "" 2023-04-19T08:59:39,216 setup_py_code = "from setuptools import setup; setup()" 2023-04-19T08:59:39,216 2023-04-19T08:59:39,216 exec(compile(setup_py_code, filename, "exec")) 2023-04-19T08:59:39,216 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-4t8gyrly/scipion-em-xmipptomo_a55ade962eb849ad892bbea64e1fb3e3/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-qip669bu[/] 2023-04-19T08:59:39,216 [bold magenta]cwd[/]: /tmp/pip-wheel-4t8gyrly/scipion-em-xmipptomo_a55ade962eb849ad892bbea64e1fb3e3/ 2023-04-19T08:59:39,217 Preparing metadata (setup.py): finished with status 'error' 2023-04-19T08:59:39,218 ERROR: [present-rich] metadata generation failed 2023-04-19T08:59:39,224 Exception information: 2023-04-19T08:59:39,224 Traceback (most recent call last): 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-04-19T08:59:39,224 call_subprocess( 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-04-19T08:59:39,224 raise error 2023-04-19T08:59:39,224 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-04-19T08:59:39,224 2023-04-19T08:59:39,224 The above exception was the direct cause of the following exception: 2023-04-19T08:59:39,224 2023-04-19T08:59:39,224 Traceback (most recent call last): 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2023-04-19T08:59:39,224 status = run_func(*args) 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2023-04-19T08:59:39,224 return func(self, options, args) 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 170, in run 2023-04-19T08:59:39,224 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-04-19T08:59:39,224 result = self._result = resolver.resolve( 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 481, in resolve 2023-04-19T08:59:39,224 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 348, in resolve 2023-04-19T08:59:39,224 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 172, in _add_to_criteria 2023-04-19T08:59:39,224 if not criterion.candidates: 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/structs.py", line 151, in __bool__ 2023-04-19T08:59:39,224 return bool(self._sequence) 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-04-19T08:59:39,224 return any(self) 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-04-19T08:59:39,224 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-04-19T08:59:39,224 candidate = func() 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-04-19T08:59:39,224 self._link_candidate_cache[link] = LinkCandidate( 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 297, in __init__ 2023-04-19T08:59:39,224 super().__init__( 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 162, in __init__ 2023-04-19T08:59:39,224 self.dist = self._prepare() 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 231, in _prepare 2023-04-19T08:59:39,224 dist = self._prepare_distribution() 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 308, in _prepare_distribution 2023-04-19T08:59:39,224 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 491, in prepare_linked_requirement 2023-04-19T08:59:39,224 return self._prepare_linked_requirement(req, parallel_builds) 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 577, in _prepare_linked_requirement 2023-04-19T08:59:39,224 dist = _get_prepared_distribution( 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-04-19T08:59:39,224 abstract_dist.prepare_distribution_metadata( 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-04-19T08:59:39,224 self.req.prepare_metadata() 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/req/req_install.py", line 545, in prepare_metadata 2023-04-19T08:59:39,224 self.metadata_directory = generate_metadata_legacy( 2023-04-19T08:59:39,224 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-04-19T08:59:39,224 raise MetadataGenerationFailed(package_details=details) from error 2023-04-19T08:59:39,224 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-04-19T08:59:39,235 Removed scipion-em-xmipptomo==3.23.3.3 from https://files.pythonhosted.org/packages/be/03/99f1635c0a4d72062697298a9a2f5557ddd26bd0c74c012b8a86517ae5b5/scipion-em-xmipptomo-3.23.3.3.tar.gz from build tracker '/tmp/pip-build-tracker-bqcziy5j' 2023-04-19T08:59:39,235 Removed build tracker: '/tmp/pip-build-tracker-bqcziy5j'